Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 209 of 410
Found at i:63847816 original size:40 final size:40
Alignment explanation
Indices: 63847757--63847964 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
63847747 CAATTGAATG
* * * *
63847757 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
63847797 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
63847837 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
63847877 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
63847917 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
63847957 ATATCCGG
1 ATATCCGG
63847965 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:63847895 original size:80 final size:80
Alignment explanation
Indices: 63847758--63847964 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
63847748 AATTGAATGA
* * ** * * *
63847758 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
63847823 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
63847836 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
63847901 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
63847918 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
63847965 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:63852665 original size:80 final size:80
Alignment explanation
Indices: 63852581--63852729 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
63852571 TATGGTAACC
* * * *
63852581 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
63852645 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
63852661 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
63852726 CCGG
66 CCGG
63852730 TTGTAGCCAC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:63852770 original size:40 final size:40
Alignment explanation
Indices: 63852622--63852771 Score: 189
Period size: 40 Copynumber: 3.8 Consensus size: 40
63852612 ATCACGATTT
* * * * *
63852622 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTC
1 GCACAATTGCCTTCGGGTCTTAACCCGG-TTGTA-GCCACTA
* *
63852662 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAACCCGGTTGTAGCCACTA
63852702 GCACAATTGCCTTCGGGTCTTAACCCGGTTGTAGCCACTA
1 GCACAATTGCCTTCGGGTCTTAACCCGGTTGTAGCCACTA
63852742 GCACAATTGCCTTCGGGTCTTAACCCGGTT
1 GCACAATTGCCTTCGGGTCTTAACCCGGTT
63852772 ATAATTTCCA
Statistics
Matches: 100, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 93 0.93
41 2 0.02
ACGTcount: A:0.21, C:0.29, G:0.25, T:0.25
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAACCCGGTTGTAGCCACTA
Found at i:63852790 original size:40 final size:40
Alignment explanation
Indices: 63852622--63852809 Score: 155
Period size: 40 Copynumber: 4.7 Consensus size: 40
63852612 ATCACGATTT
* * * * **
63852622 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAACCAC-CA
* * * * *
63852662 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAACCCGGTTATAACCACCA
* * *
63852702 GCACAATTGCCTTCGGGTCTTAACCCGGTTGTAGCCACTA
1 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAACCACCA
***
63852742 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAACCACCA
* * * *
63852782 GCATAATTGTCTTCGGGGCTTAGCCCGG
1 GCACAATTGCCTTCGGGTCTTAACCCGG
63852810 ATATCATTCA
Statistics
Matches: 127, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 2 0.02
40 123 0.97
41 2 0.02
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAACCCGGTTATAACCACCA
Found at i:63857995 original size:46 final size:46
Alignment explanation
Indices: 63857928--63858102 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
63857918 TGTAACCTGC
63857928 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
63857974 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCACAT
* * * * *
63858024 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
*
63858067 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
63858103 ATGCTCAACC
Statistics
Matches: 112, Mismatches: 6, Indels: 22
0.80 0.04 0.16
Matches are distributed among these distances:
42 3 0.03
43 5 0.04
44 1 0.01
46 64 0.57
47 27 0.24
48 1 0.01
49 1 0.01
50 6 0.05
51 4 0.04
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
Found at i:63858048 original size:93 final size:93
Alignment explanation
Indices: 63857936--63858106 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
63857926 GCCCATAAGT
* *
63857936 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
63858001 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
63858029 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
63858094 CGAGTTCGGATGC
66 CGAGCTCGGATGC
63858107 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:63858122 original size:46 final size:45
Alignment explanation
Indices: 63857933--63858122 Score: 165
Period size: 46 Copynumber: 4.1 Consensus size: 45
63857923 CCTGCCCATA
** *
63857933 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-ACATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACATCC-T
63857978 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACATC-CT
* * *** *
63858028 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACATCC-T
*
63858071 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAA-CATCCT
63858118 AGTGA
1 AGTGA
63858123 CATGTCACTT
Statistics
Matches: 117, Mismatches: 14, Indels: 26
0.75 0.09 0.17
Matches are distributed among these distances:
42 1 0.01
43 5 0.04
45 1 0.01
46 68 0.58
47 29 0.25
48 6 0.05
50 6 0.05
51 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACATCCT
Found at i:63866426 original size:38 final size:40
Alignment explanation
Indices: 63866329--63866549 Score: 287
Period size: 38 Copynumber: 5.7 Consensus size: 40
63866319 TCGAATGATG
* * *
63866329 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
63866369 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63866409 T-CGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63866447 TCCGGGTTAAGTCCCGAAGGCA-TT-TGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63866485 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
63866526 -CCGGGCTATGT-CCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63866550 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 8, Indels: 15
0.88 0.04 0.08
Matches are distributed among these distances:
38 65 0.39
39 34 0.20
40 57 0.34
41 10 0.06
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63866466 original size:78 final size:79
Alignment explanation
Indices: 63866329--63866549 Score: 301
Period size: 78 Copynumber: 2.8 Consensus size: 79
63866319 TCGAATGATG
* * * * *
63866329 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCGAAGGCATT
63866393 TGTGCGAGTTACTAAA
64 TGTGCGAGTTACTAAA
*
63866409 T-CGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCA-TT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGT-CCGAAGGCATTT
63866471 -TGCGAGTTACTAAA
65 GTGCGAGTTACTAAA
*
63866485 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCGAAGGCATTT
63866549 G
65 G
63866550 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 8, Indels: 15
0.85 0.05 0.10
Matches are distributed among these distances:
76 15 0.12
77 22 0.17
78 70 0.56
79 18 0.14
80 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:63866580 original size:78 final size:75
Alignment explanation
Indices: 63866336--63866582 Score: 275
Period size: 78 Copynumber: 3.2 Consensus size: 75
63866326 ATGTCCGGGC
* * * *
63866336 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGA
1 TAAGT-CCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCGAAGGCA-TT-TGCGA
*
63866400 GTTACTAAATCGGGT
61 GTTACTAAATCCGGT
*
63866415 TAAGTCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTTGCGAGTT
1 TAAGTCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGT-CCGAAGGCATTTGCGAGTT
63866479 ACTAAATCCGGGT
64 ACTAAATCC-GGT
*
63866492 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCGAAGGCATTTGAACGAG-
1 TAAGT-CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCATTTG--CGAGT
*
63866556 TAGCTATATCCGGT
63 TA-CTAAATCCGGT
*
63866570 TAAACTCCGAAGG
1 T-AAGTCCGAAGG
63866583 TACGTGATTC
Statistics
Matches: 148, Mismatches: 10, Indels: 21
0.83 0.06 0.12
Matches are distributed among these distances:
76 16 0.11
77 25 0.17
78 79 0.53
79 28 0.19
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (75 bp):
TAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCATTTGCGAGTTAC
TAAATCCGGT
Found at i:63874733 original size:40 final size:40
Alignment explanation
Indices: 63874493--63874719 Score: 307
Period size: 40 Copynumber: 5.7 Consensus size: 40
63874483 TTCGAATGAT
* * * *
63874493 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
**
63874533 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* *
63874573 ACCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
63874613 ATCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
63874653 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
63874694 A-CCGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGTTAAGTCCCGAAGGCATTTG
63874720 AACGAGTAGC
Statistics
Matches: 169, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 158 0.93
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:63877915 original size:31 final size:30
Alignment explanation
Indices: 63877880--63877953 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 30
63877870 TTAATGGTTC
* *
63877880 AGTGACTAAAATGTTACAACATTT-TAACGTA
1 AGTGACTAAAATGTT--AACATTTCAAACATA
*
63877911 AGTGACTAAAACG-TAACATTTCAAACATA
1 AGTGACTAAAATGTTAACATTTCAAACATA
63877940 AGTGACTAAAATGT
1 AGTGACTAAAATGT
63877954 AATTTAAGGT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 7 0.19
29 17 0.46
30 1 0.03
31 12 0.32
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.28
Consensus pattern (30 bp):
AGTGACTAAAATGTTAACATTTCAAACATA
Found at i:63878743 original size:9 final size:8
Alignment explanation
Indices: 63878728--63878752 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
63878718 TGATTTATAT
63878728 TAAAAAAA
1 TAAAAAAA
63878736 TAAAAAAA
1 TAAAAAAA
63878744 TAAAAAAA
1 TAAAAAAA
63878752 T
1 T
63878753 TCCTATTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (8 bp):
TAAAAAAA
Found at i:63881675 original size:3 final size:3
Alignment explanation
Indices: 63881667--63881695 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
63881657 ATACGGATCC
63881667 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
63881696 AAGACAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:63885184 original size:53 final size:53
Alignment explanation
Indices: 63885125--63885230 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
63885115 AAAGGGTTAG
63885125 CACCTTATATTGGATTTCTTGTTGCTTTGCCATTTTTCTTTGACTATTTTATT
1 CACCTTATATTGGATTTCTTGTTGCTTTGCCATTTTTCTTTGACTATTTTATT
63885178 CACCTTATATTGGATTTCTTGTTGCTTTGCCATTTTTCTTTGACTATTTTATT
1 CACCTTATATTGGATTTCTTGTTGCTTTGCCATTTTTCTTTGACTATTTTATT
63885231 ACATATTCAC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.15, C:0.17, G:0.11, T:0.57
Consensus pattern (53 bp):
CACCTTATATTGGATTTCTTGTTGCTTTGCCATTTTTCTTTGACTATTTTATT
Found at i:63888625 original size:22 final size:21
Alignment explanation
Indices: 63888584--63888625 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
63888574 CACTTTTTCA
*
63888584 TTATGTTTTTTATGTTTTCTT
1 TTATGTTTTTTATGTCTTCTT
63888605 TTATAGTTTTTTCAT-TCTTCT
1 TTAT-GTTTTTT-ATGTCTTCT
63888626 GAATTTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 4 0.22
22 12 0.67
23 2 0.11
ACGTcount: A:0.12, C:0.10, G:0.07, T:0.71
Consensus pattern (21 bp):
TTATGTTTTTTATGTCTTCTT
Found at i:63888818 original size:21 final size:20
Alignment explanation
Indices: 63888773--63888825 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
63888763 AACGTACACA
* *
63888773 TTATTATTTTTTAAGATAAT
1 TTATTTTTTTTTAAAATAAT
63888793 TTATTTTTTTTTAAAAT-AT
1 TTATTTTTTTTTAAAATAAT
63888812 TTATATTTATTTTT
1 TTAT-TTT-TTTTT
63888826 TTATGTGACA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 6 0.21
20 18 0.62
21 5 0.17
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (20 bp):
TTATTTTTTTTTAAAATAAT
Found at i:63893074 original size:42 final size:42
Alignment explanation
Indices: 63892993--63893070 Score: 97
Period size: 42 Copynumber: 1.9 Consensus size: 42
63892983 TCGTGTTGCT
* * *
63892993 GACCGTGTGCAATTCAAAATAGGGTCATACTGCCTTGTCATA
1 GACCGTGTGCAATTCAAAATAGGATCACACTGACTTGTCATA
**
63893035 GACCGTGTGCAATTTGAAATAGGATCACA-TGA-TTGT
1 GACCGTGTGCAATTCAAAATAGGATCACACTGACTTGT
63893071 GTCACAAACC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
40 4 0.13
41 2 0.06
42 25 0.81
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (42 bp):
GACCGTGTGCAATTCAAAATAGGATCACACTGACTTGTCATA
Found at i:63895448 original size:68 final size:68
Alignment explanation
Indices: 63895339--63895495 Score: 219
Period size: 68 Copynumber: 2.3 Consensus size: 68
63895329 CGTGAAAGTT
* * *
63895339 CGCCAAGACATTAAACATGGGGATTACAGGTGTAAGACCATAGCTC-AGCTATGGCA-ACCAATT
1 CGCCAAGACATTAAACATGAGGATTACAGGTGTAAGACCATAACTCGA-CTATGG-AGACCAATA
63895402 GAGTC
64 GAGTC
* * *
63895407 CGCCAGGACATTAGACATGAGGATTACAGGTGTAAGACCATAACTCGACTATGGAGACCAGTAGA
1 CGCCAAGACATTAAACATGAGGATTACAGGTGTAAGACCATAACTCGACTATGGAGACCAATAGA
63895472 GTC
66 GTC
*
63895475 TGCCAAGACATTAAACATGAG
1 CGCCAAGACATTAAACATGAG
63895496 ACATGATGAG
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
67 1 0.01
68 76 0.97
69 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (68 bp):
CGCCAAGACATTAAACATGAGGATTACAGGTGTAAGACCATAACTCGACTATGGAGACCAATAGA
GTC
Found at i:63898745 original size:22 final size:23
Alignment explanation
Indices: 63898720--63898771 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
63898710 TATAAAACCT
63898720 AATAAAAATAAG-CTTAAAGAAA
1 AATAAAAATAAGTCTTAAAGAAA
* **
63898742 AATAAAAATTAGTCTTAAATTAA
1 AATAAAAATAAGTCTTAAAGAAA
63898765 AATAAAA
1 AATAAAA
63898772 GGAACAACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 11 0.42
23 15 0.58
ACGTcount: A:0.65, C:0.04, G:0.06, T:0.25
Consensus pattern (23 bp):
AATAAAAATAAGTCTTAAAGAAA
Found at i:63901471 original size:17 final size:17
Alignment explanation
Indices: 63901449--63901481 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
63901439 TGTGTTATTC
*
63901449 GAATTACGGGCTTGAAG
1 GAATTACGAGCTTGAAG
63901466 GAATTACGAGCTTGAA
1 GAATTACGAGCTTGAA
63901482 AGGTGATTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.24
Consensus pattern (17 bp):
GAATTACGAGCTTGAAG
Found at i:63904831 original size:13 final size:13
Alignment explanation
Indices: 63904813--63904837 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63904803 CTTAGCTGGG
63904813 ACACGCCCGTGTT
1 ACACGCCCGTGTT
63904826 ACACGCCCGTGT
1 ACACGCCCGTGT
63904838 GCGATTACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.24, T:0.20
Consensus pattern (13 bp):
ACACGCCCGTGTT
Found at i:63908967 original size:22 final size:22
Alignment explanation
Indices: 63908911--63908978 Score: 57
Period size: 22 Copynumber: 3.0 Consensus size: 22
63908901 AAGTCATGGT
63908911 CAGTAAGCTCCTTTGAGCTAAAAA
1 CAGTAAGCT-CTTTGAGCT-AAAA
* * *
63908935 CAATAAACTCTATTGAGCT-GAA
1 CAGTAAGCTCT-TTGAGCTAAAA
*
63908957 CAGTAAGCTCTTTCGAGATAAA
1 CAGTAAGCTCTTT-GAGCTAAA
63908979 TCGATAAGCT
Statistics
Matches: 34, Mismatches: 7, Indels: 7
0.71 0.15 0.15
Matches are distributed among these distances:
21 2 0.06
22 15 0.44
23 3 0.09
24 14 0.41
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.26
Consensus pattern (22 bp):
CAGTAAGCTCTTTGAGCTAAAA
Found at i:63928128 original size:19 final size:19
Alignment explanation
Indices: 63928106--63928154 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
63928096 TAAATCATGT
*
63928106 ATATGTATATAT-AATATAA
1 ATAT-TATATATAAAGATAA
*
63928125 ATATCAATATATAAAGATAA
1 ATAT-TATATATAAAGATAA
63928145 ATATTATATA
1 ATATTATATA
63928155 AATCTTTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.39
Consensus pattern (19 bp):
ATATTATATATAAAGATAA
Found at i:63932702 original size:23 final size:22
Alignment explanation
Indices: 63932602--63932728 Score: 103
Period size: 23 Copynumber: 5.5 Consensus size: 22
63932592 GTCATGGTCG
*
63932602 GTAAGCTCCTCTGAGCTGATAAACA
1 GTAAGCT-CTTTGAGCTG--AAACA
* *
63932627 GTAAGGTCTATTGAGCTGAAAACG
1 GTAAGCTCT-TTGAGCTG-AAACA
* *
63932651 GTAAGCTCTATTTAGCT-AAATA
1 GTAAGCTCT-TTGAGCTGAAACA
*
63932673 GTAAGCTCTTTCGAGCTGAATCA
1 GTAAGCTCTTT-GAGCTGAAACA
**
63932696 GTAAGCTTCAATGAGCTGAAACA
1 GTAAGC-TCTTTGAGCTGAAACA
63932719 GTAAGCTCTT
1 GTAAGCTCTT
63932729 ACAAGCTGTG
Statistics
Matches: 82, Mismatches: 16, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
21 2 0.02
22 18 0.22
23 25 0.30
24 24 0.29
25 13 0.16
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (22 bp):
GTAAGCTCTTTGAGCTGAAACA
Found at i:63932735 original size:23 final size:23
Alignment explanation
Indices: 63932664--63932736 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
63932654 AGCTCTATTT
* * *
63932664 AGCT-AAATAGTAAGCTCTTTCG
1 AGCTGAAACAGTAAGCTCTTACA
* *
63932686 AGCTGAATCAGTAAGCT-TCA-A
1 AGCTGAAACAGTAAGCTCTTACA
63932707 TGAGCTGAAACAGTAAGCTCTTACA
1 --AGCTGAAACAGTAAGCTCTTACA
63932732 AGCTG
1 AGCTG
63932737 TGGTGAGTCC
Statistics
Matches: 39, Mismatches: 7, Indels: 9
0.71 0.13 0.16
Matches are distributed among these distances:
22 5 0.13
23 31 0.79
24 2 0.05
25 1 0.03
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (23 bp):
AGCTGAAACAGTAAGCTCTTACA
Found at i:63940550 original size:46 final size:46
Alignment explanation
Indices: 63940500--63940628 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
63940490 TGGTTGAGCA
*
63940500 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
63940546 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
63940592 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63940629 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:63948080 original size:46 final size:46
Alignment explanation
Indices: 63948030--63948158 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
63948020 TGGTTGAGCA
*
63948030 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
63948076 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
63948122 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63948159 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:63950002 original size:37 final size:37
Alignment explanation
Indices: 63949896--63950004 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
63949886 AGCTCAGACG
* * *
63949896 AAATCTCCACACGAAGTTATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
63949933 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
63949970 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
63950005 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:63950209 original size:50 final size:50
Alignment explanation
Indices: 63950155--63950251 Score: 151
Period size: 50 Copynumber: 1.9 Consensus size: 50
63950145 ATCGCCTACG
63950155 TATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCATATATA
1 TATTTCACA-TAGACCATTCGGCTTTACCACATATACATATCTCATATATA
* * *
63950205 TATTTCACATTGACCATTCGGCTTTACCACGTATGCATATCTCATAT
1 TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATAT
63950252 TCATCACATT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 2 0.05
50 41 0.95
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.37
Consensus pattern (50 bp):
TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATATATA
Found at i:63950308 original size:47 final size:47
Alignment explanation
Indices: 63950209--63950401 Score: 246
Period size: 47 Copynumber: 4.1 Consensus size: 47
63950199 TATATATATT
* * * * *
63950209 TCACATTGACCATTCGGCTTTA-C-CACGTATGCATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTCACATTCA
63950255 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
63950302 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* * * ** *
63950349 TCACATTGGCCATTCGGCCTTATCTCATATATACATATTCACTTTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
63950396 TCACAT
1 TCACAT
63950402 AAAATCCTAA
Statistics
Matches: 134, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
46 20 0.15
47 104 0.78
48 10 0.07
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
Found at i:63950329 original size:22 final size:22
Alignment explanation
Indices: 63950254--63950372 Score: 59
Period size: 23 Copynumber: 5.1 Consensus size: 22
63950244 TCTCATATTC
63950254 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
63950276 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
63950300 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
63950323 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
63950347 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
63950370 ATC
1 ATC
63950373 TCATATATAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 18 0.25
23 19 0.27
24 19 0.27
25 15 0.21
ACGTcount: A:0.24, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:63953382 original size:96 final size:96
Alignment explanation
Indices: 63953232--63953570 Score: 403
Period size: 96 Copynumber: 3.5 Consensus size: 96
63953222 GACCATGGAG
* * * ***
63953232 ATATGAGAGCCAGTGTAAGACCATGTATGGGACATGGCATCGGCCTCGATATGTGTCAGTGTAAG
1 ATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTTTATGTGTCAGTGTAAG
* *
63953297 ACCATGTCTAGGACATGGCATCGGCACTGGT
66 ACCATGTCTGGGACATGGCATCGGCACTGAT
* * * * * *
63953328 ATATGCGAGCTAGTGTAAGACCATGTTTGGAACATGGTATCGACATTTTTATGTGAGCCAGAGTA
1 ATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTTTATGT--GTCAGTGTA
*
63953393 AGACCATGTCTGGGACATGGCATCGGC-CTCA-
64 AGACCATGTCTGGGACATGGCATCGGCACTGAT
** * * *
63953424 ATATTCGAGCTAGCGTAAGACCATGTTTGGAACATGACATCGGCATTGTTGTATGTGTCAGTGTA
1 ATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT-TT-TATGTGTCAGTGTA
*
63953489 AGACCATGTCTGGGACATGGCATCGACACTGAT
64 AGACCATGTCTGGGACATGGCATCGGCACTGAT
* ** *
63953522 GTATGAGAGCCAGTGTAAGACCATGTCCGGAACATGGCATCAGCATTTT
1 ATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTT
63953571 ACCCTTTTGT
Statistics
Matches: 204, Mismatches: 33, Indels: 11
0.82 0.13 0.04
Matches are distributed among these distances:
96 119 0.58
97 9 0.04
98 76 0.37
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (96 bp):
ATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTTTATGTGTCAGTGTAAG
ACCATGTCTGGGACATGGCATCGGCACTGAT
Found at i:63953411 original size:48 final size:48
Alignment explanation
Indices: 63953232--63953567 Score: 279
Period size: 48 Copynumber: 7.0 Consensus size: 48
63953222 GACCATGGAG
* * * *
63953232 ATATGAGAGCCAGTGTAAGACCATGTATGGGACATGGCATCGGCCTCG
1 ATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCT
* * *
63953280 ATATGT--GTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACTGGT
1 ATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-T-CT
* * * * * * *
63953328 ATATGCGAGCTAGTGTAAGACCATGTTTGGAACATGGTATCGACATTT
1 ATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCT
* * * *
63953376 TTATGTGAGCCAGAGTAAGACCATGTCTGGGACATGGCATCGGCCTCA
1 ATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCT
* * * * *
63953424 ATAT-TCGAGCTAGCGTAAGACCATGTTTGGAACATGACATCGGCAT-T
1 ATATGT-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCT
* * * *
63953471 GT-TGTATGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACA-CT
1 ATATG--TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCT
* * * *
63953519 GATGTATGAGAGCCAGTGTAAGACCATGTCCGGAACATGGCATCAGCAT
1 -A--TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
63953568 TTTACCCTTT
Statistics
Matches: 222, Mismatches: 52, Indels: 25
0.74 0.17 0.08
Matches are distributed among these distances:
46 34 0.15
47 3 0.01
48 117 0.53
49 2 0.01
50 63 0.28
51 1 0.00
52 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (48 bp):
ATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCT
Found at i:63961721 original size:40 final size:39
Alignment explanation
Indices: 63961621--63961732 Score: 161
Period size: 40 Copynumber: 2.8 Consensus size: 39
63961611 TGAAAATTAT
* * *
63961621 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGTTAT
1 ATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTAGTTAA
*
63961661 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAGTTAA
63961701 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 ATCCGGGCTAAGACCCGAAGGCA-TTGTGCAA
63961733 ATCGTGATAT
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
39 3 0.05
40 61 0.92
41 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTAGTTAA
Found at i:63961745 original size:40 final size:39
Alignment explanation
Indices: 63961577--63961762 Score: 160
Period size: 40 Copynumber: 4.7 Consensus size: 39
63961567 AGAAATTGAA
* * * *
63961577 TGATATCTGGGCTAAGCCCCGAAGACAATTATGCTGAAAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * *
63961618 T-ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* * *
63961657 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
63961697 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* * *
63961737 TGATATCCGGGTTAAGTCCCGTAGGC
1 TGATATCCGGGCTAAGACCCGAAGGC
63961763 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 21, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
37 4 0.03
38 2 0.02
39 4 0.03
40 107 0.90
41 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:63961787 original size:80 final size:80
Alignment explanation
Indices: 63961621--63961807 Score: 187
Period size: 80 Copynumber: 2.3 Consensus size: 80
63961611 TGAAAATTAT
* * * * *
63961621 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATAGTGATATCCGGGCTAAGACCCGAAGGCATT
***
63961686 CGTGCAAGTTGTTAA
66 CGTGCAAGTTACCAA
* * * * *
63961701 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGATATCCGGGTTAAGTCCCGTAGGCCTT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATAGTGATATCCGGGCTAAGACCCGAAGGCATT
* **
63961766 GGTGCGGGTTACCATA
66 CGTGCAAGTTACCA-A
* * *
63961782 A-CCGGGCTATGTCCCGAAGGCGTTTG
1 ATCCGGGCTAAGACCCGAAGGCATTTG
63961808 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 19, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
80 85 0.98
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATAGTGATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTACCAA
Found at i:63963790 original size:27 final size:27
Alignment explanation
Indices: 63963759--63963815 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
63963749 AGCTTGCATG
63963759 ATATAAACTTAATGCACTCACATAAAT
1 ATATAAACTTAATGCACTCACATAAAT
63963786 ATATAAACTTAATGCACTCACATAAAT
1 ATATAAACTTAATGCACTCACATAAAT
63963813 ATA
1 ATA
63963816 CTTCAATAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.49, C:0.18, G:0.04, T:0.30
Consensus pattern (27 bp):
ATATAAACTTAATGCACTCACATAAAT
Found at i:63970462 original size:42 final size:42
Alignment explanation
Indices: 63970353--63970473 Score: 125
Period size: 43 Copynumber: 2.9 Consensus size: 42
63970343 CATGCCAATG
* * * * *
63970353 CCATATCCCAAATATAGTCTTACATGTAATCTCATACCGATG
1 CCATATCCCAGATATGGTCTTACACGAAATCTCATACCGATA
** * * *
63970395 CCAATAGACCAGCTATGGTCTTACACGAAATTTCATATCGATA
1 CC-ATATCCCAGATATGGTCTTACACGAAATCTCATACCGATA
* *
63970438 CCATATCCCAGATATGGTTTTACACAAAATCTCATA
1 CCATATCCCAGATATGGTCTTACACGAAATCTCATA
63970474 ATGATGTCAT
Statistics
Matches: 62, Mismatches: 16, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
42 30 0.48
43 32 0.52
ACGTcount: A:0.35, C:0.25, G:0.11, T:0.30
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTACACGAAATCTCATACCGATA
Found at i:63970485 original size:42 final size:42
Alignment explanation
Indices: 63970353--63970505 Score: 119
Period size: 42 Copynumber: 3.6 Consensus size: 42
63970343 CATGCCAATG
* * *** * *
63970353 CCATATCCCAAATATAGTCTTACATGTAATCTCATACCGATG
1 CCATATCCCAGATATGGTCTTACACAAAATCTCATATCGATA
** * * *
63970395 CCAATAGACCAGCTATGGTCTTACACGAAATTTCATATCGATA
1 CC-ATATCCCAGATATGGTCTTACACAAAATCTCATATCGATA
* *
63970438 CCATATCCCAGATATGGTTTTACACAAAATCTCATAAT-GATG
1 CCATATCCCAGATATGGTCTTACACAAAATCTCAT-ATCGATA
* ** *
63970480 TCATATTTCACATATGGTCTTACACA
1 CCATATCCCAGATATGGTCTTACACA
63970506 TAACCTCGGT
Statistics
Matches: 87, Mismatches: 22, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
42 53 0.61
43 34 0.39
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTACACAAAATCTCATATCGATA
Found at i:63970725 original size:19 final size:19
Alignment explanation
Indices: 63970685--63970727 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
63970675 CACTTTTTAC
* * *
63970685 AATTTAGTCCTTTTTGCTA
1 AATTTAGTCATTTTTACAA
63970704 AATTTAGTCATTTTTACAA
1 AATTTAGTCATTTTTACAA
63970723 AATTT
1 AATTT
63970728 TCACAAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.12, G:0.07, T:0.51
Consensus pattern (19 bp):
AATTTAGTCATTTTTACAA
Found at i:63975234 original size:13 final size:13
Alignment explanation
Indices: 63975194--63975235 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
63975184 AACAATTAAA
*
63975194 TCACATTAATATT
1 TCACATTAAAATT
* *
63975207 ACACATTAAATTT
1 TCACATTAAAATT
63975220 TCACATTAAAATT
1 TCACATTAAAATT
63975233 TCA
1 TCA
63975236 ATTTTCACAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (13 bp):
TCACATTAAAATT
Found at i:63977097 original size:40 final size:40
Alignment explanation
Indices: 63977053--63977133 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
63977043 CAACTGGTTC
*
63977053 TTTAGTGGGAGATAAAATAATTGCCAATGGATGGTTTTGA
1 TTTAGTGGGAGATAAAATAATTGCCAATGGATAGTTTTGA
63977093 TTTAGTGGGAGATAAAATAATTGCCAATGGATAGTTTTGA
1 TTTAGTGGGAGATAAAATAATTGCCAATGGATAGTTTTGA
63977133 T
1 T
63977134 ATGGTTGAAG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (40 bp):
TTTAGTGGGAGATAAAATAATTGCCAATGGATAGTTTTGA
Found at i:63977983 original size:19 final size:19
Alignment explanation
Indices: 63977959--63977997 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
63977949 GAGTTAACAT
63977959 AACCTTTTCATGTATTTGG
1 AACCTTTTCATGTATTTGG
*
63977978 AACCTTTTCATGTTTTTGG
1 AACCTTTTCATGTATTTGG
63977997 A
1 A
63977998 GGGTCATATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.15, G:0.15, T:0.49
Consensus pattern (19 bp):
AACCTTTTCATGTATTTGG
Found at i:63985307 original size:13 final size:12
Alignment explanation
Indices: 63985284--63985346 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
63985274 AATAATTTTA
63985284 TATTAAAATTAT
1 TATTAAAATTAT
63985296 TATT-AAA-TAT
1 TATTAAAATTAT
63985306 TATTAATAATTA-
1 TATTAA-AATTAT
*
63985318 TATTAAGAA-TGT
1 TATTAA-AATTAT
63985330 TATT-AAATTAT
1 TATTAAAATTAT
63985341 ATATTA
1 -TATTA
63985347 TTTTATAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
10 9 0.22
11 8 0.20
12 22 0.54
13 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (12 bp):
TATTAAAATTAT
Found at i:63985311 original size:22 final size:23
Alignment explanation
Indices: 63985284--63985346 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 23
63985274 AATAATTTTA
63985284 TATTAAAATTATTATTA-AATAT
1 TATTAAAATTATTATTAGAATAT
*
63985306 TATTAATAATTA-TATTAAGAATGT
1 TATTAA-AATTATTATT-AGAATAT
63985330 TATT-AAATTATATATTA
1 TATTAAAATTAT-TATTA
63985347 TTTTATAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
22 15 0.43
23 8 0.23
24 12 0.34
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (23 bp):
TATTAAAATTATTATTAGAATAT
Found at i:63985339 original size:29 final size:27
Alignment explanation
Indices: 63985307--63985396 Score: 67
Period size: 30 Copynumber: 3.1 Consensus size: 27
63985297 ATTAAATATT
63985307 ATTAATAATTATATTAAGAATGTTATTAA
1 ATTAATAATTATATTAA-AAT-TTATTAA
* *
63985336 ATT-ATATATTATTTTATAAAATTATATTTA
1 ATTAATA-ATTA-TAT-TAAAATT-TATTAA
* *
63985366 A-TAATAATTATGTTAAAATATGATTAA
1 ATTAATAATTATATTAAAAT-TTATTAA
63985393 ATTA
1 ATTA
63985397 TTTATTTTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 15
0.71 0.07 0.22
Matches are distributed among these distances:
27 11 0.22
28 8 0.16
29 13 0.27
30 14 0.29
31 3 0.06
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (27 bp):
ATTAATAATTATATTAAAATTTATTAA
Found at i:63985353 original size:34 final size:33
Alignment explanation
Indices: 63985276--63985353 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 33
63985266 TTCTTAATAA
63985276 TAATTTTATATTAAAATTATTATTAAATATTAT
1 TAATTTTATATTAAAATTATTATTAAATATTAT
* *
63985309 TAATAATTATATTAAGAA-TGTTATTAAATTATATAT
1 TAAT-TTTATATTAA-AATTATTATTAAA-TAT-TAT
63985345 T-ATTTTATA
1 TAATTTTATA
63985354 AAATTATATT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
33 4 0.11
34 23 0.61
35 7 0.18
36 4 0.11
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (33 bp):
TAATTTTATATTAAAATTATTATTAAATATTAT
Found at i:63985425 original size:61 final size:58
Alignment explanation
Indices: 63985309--63985442 Score: 148
Period size: 61 Copynumber: 2.3 Consensus size: 58
63985299 TAAATATTAT
* *
63985309 TAATAATTATATTAAGAATGTTATTAAATTATATATTATTTTATAAAATTATATTTAA
1 TAATAATTATATTAAGAATATGATTAAATTATATATTATTTTATAAAATTATATTTAA
* *
63985367 TAATAATTATGTTAA-AATATGATTAAATTATTTATTTTTATTTTTATTAAAA-TATATTTAA
1 TAATAATTATATTAAGAATATGATTAAATTA--TA-TATTA-TTTTA-TAAAATTATATTTAA
*
63985428 CAATAATCT-TATTAA
1 TAATAAT-TATATTAA
63985443 AATTTAATAA
Statistics
Matches: 64, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
57 13 0.20
58 14 0.22
59 2 0.03
60 4 0.06
61 25 0.39
62 6 0.09
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (58 bp):
TAATAATTATATTAAGAATATGATTAAATTATATATTATTTTATAAAATTATATTTAA
Found at i:63985459 original size:25 final size:26
Alignment explanation
Indices: 63985410--63985460 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
63985400 ATTTTTATTT
*
63985410 TTATTAAAATATATTTAACAATAATC
1 TTATTAAAATATATATAACAATAATC
*
63985436 TTATTAAAATTTA-ATAACAATAATC
1 TTATTAAAATATATATAACAATAATC
63985461 ATCTACCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (26 bp):
TTATTAAAATATATATAACAATAATC
Found at i:63985628 original size:16 final size:16
Alignment explanation
Indices: 63985607--63985677 Score: 88
Period size: 16 Copynumber: 4.4 Consensus size: 16
63985597 TGAATTACTG
* *
63985607 ATTACAGCACTATTCC
1 ATTACAGCTCTATTCT
63985623 ATTACAGCTCTATTCT
1 ATTACAGCTCTATTCT
* *
63985639 ATTACATCTCTATTCA
1 ATTACAGCTCTATTCT
* *
63985655 ATTACAACCCTATTCT
1 ATTACAGCTCTATTCT
63985671 ATTACAG
1 ATTACAG
63985678 TGAACCAAAC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCT
Found at i:63985652 original size:32 final size:32
Alignment explanation
Indices: 63985607--63985677 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 32
63985597 TGAATTACTG
* * *
63985607 ATTACAGCACTATTCCATTACAGCTCTATTCT
1 ATTACAGCACTATTCAATTACAACCCTATTCT
* *
63985639 ATTACATCTCTATTCAATTACAACCCTATTCT
1 ATTACAGCACTATTCAATTACAACCCTATTCT
63985671 ATTACAG
1 ATTACAG
63985678 TGAACCAAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.38
Consensus pattern (32 bp):
ATTACAGCACTATTCAATTACAACCCTATTCT
Found at i:63985733 original size:21 final size:21
Alignment explanation
Indices: 63985707--63985774 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
63985697 TGTCTAAGTA
63985707 TATTTATTTTTAAAATAATAC
1 TATTTATTTTTAAAATAATAC
* * *
63985728 TATTTACTATATCAAAT-ATA-
1 TATTTA-TTTTTAAAATAATAC
*
63985748 TAGTTATTTTTAAAATAATAC
1 TATTTATTTTTAAAATAATAC
63985769 TATTTA
1 TATTTA
63985775 CTATATTAAA
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
19 7 0.19
20 8 0.22
21 14 0.39
22 7 0.19
ACGTcount: A:0.43, C:0.06, G:0.01, T:0.50
Consensus pattern (21 bp):
TATTTATTTTTAAAATAATAC
Found at i:63985760 original size:41 final size:41
Alignment explanation
Indices: 63985705--63985790 Score: 154
Period size: 41 Copynumber: 2.1 Consensus size: 41
63985695 AATGTCTAAG
*
63985705 TATATTTATTTTTAAAATAATACTATTTACTATATCAAATA
1 TATAGTTATTTTTAAAATAATACTATTTACTATATCAAATA
*
63985746 TATAGTTATTTTTAAAATAATACTATTTACTATATTAAATA
1 TATAGTTATTTTTAAAATAATACTATTTACTATATCAAATA
63985787 TATA
1 TATA
63985791 AAGAGTTAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.44, C:0.06, G:0.01, T:0.49
Consensus pattern (41 bp):
TATAGTTATTTTTAAAATAATACTATTTACTATATCAAATA
Found at i:63985800 original size:39 final size:40
Alignment explanation
Indices: 63985716--63985801 Score: 111
Period size: 41 Copynumber: 2.1 Consensus size: 40
63985706 ATATTTATTT
* ***
63985716 TTAAAATAATACTATTTACTATATCAAATATATAGTTATTT
1 TTAAAATAATACTATTTACTATATCAAATATATAG-AAGAG
*
63985757 TTAAAATAATACTATTTACTATATTAAATATATA-AAGAG
1 TTAAAATAATACTATTTACTATATCAAATATATAGAAGAG
63985796 TTAAAA
1 TTAAAA
63985802 AAGATAATCA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 7 0.17
41 33 0.82
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.42
Consensus pattern (40 bp):
TTAAAATAATACTATTTACTATATCAAATATATAGAAGAG
Found at i:63985918 original size:52 final size:52
Alignment explanation
Indices: 63985851--63985958 Score: 198
Period size: 52 Copynumber: 2.1 Consensus size: 52
63985841 AGTGACTAGC
* *
63985851 AAAAAAAAAATTCAAAATTTGAAACGATTTGTAGGCATTTCAGATTAATAAG
1 AAAAAAAAAACTCAAAATGTGAAACGATTTGTAGGCATTTCAGATTAATAAG
63985903 AAAAAAAAAACTCAAAATGTGAAACGATTTGTAGGCATTTCAGATTAATAAG
1 AAAAAAAAAACTCAAAATGTGAAACGATTTGTAGGCATTTCAGATTAATAAG
63985955 AAAA
1 AAAA
63985959 GGAGCTTCAA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.52, C:0.08, G:0.14, T:0.26
Consensus pattern (52 bp):
AAAAAAAAAACTCAAAATGTGAAACGATTTGTAGGCATTTCAGATTAATAAG
Found at i:63986799 original size:22 final size:22
Alignment explanation
Indices: 63986773--63986821 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
63986763 ATATCCAAAC
63986773 AATAACAACAAAATAGTAGCAA
1 AATAACAACAAAATAGTAGCAA
* * **
63986795 CATAATAGTAAAATAGTAGCAA
1 AATAACAACAAAATAGTAGCAA
63986817 AATAA
1 AATAA
63986822 GGAGAAAATA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.61, C:0.10, G:0.10, T:0.18
Consensus pattern (22 bp):
AATAACAACAAAATAGTAGCAA
Found at i:63986820 original size:11 final size:11
Alignment explanation
Indices: 63986781--63986820 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
63986771 ACAATAACAA
63986781 CAAAATAGTAG
1 CAAAATAGTAG
* *
63986792 CAACATAATAG
1 CAAAATAGTAG
*
63986803 TAAAATAGTAG
1 CAAAATAGTAG
63986814 CAAAATA
1 CAAAATA
63986821 AGGAGAAAAT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.57, C:0.10, G:0.12, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:63986829 original size:22 final size:22
Alignment explanation
Indices: 63986782--63986831 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
63986772 CAATAACAAC
* *
63986782 AAAATAGTAGCAACATAATAGT
1 AAAATAGTAGCAAAATAAGAGT
63986804 AAAATAGTAGCAAAATAAGGAG-
1 AAAATAGTAGCAAAATAA-GAGT
63986826 AAAATA
1 AAAATA
63986832 ATAAGAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 23 0.92
23 2 0.08
ACGTcount: A:0.60, C:0.06, G:0.16, T:0.18
Consensus pattern (22 bp):
AAAATAGTAGCAAAATAAGAGT
Found at i:63987851 original size:12 final size:12
Alignment explanation
Indices: 63987816--63987853 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
63987806 GTTTATATAT
*
63987816 ATATTAAAATT-
1 ATATAAAAATTA
63987827 ATATAAAAA-TA
1 ATATAAAAATTA
63987838 ATATAAAAATTA
1 ATATAAAAATTA
63987850 ATAT
1 ATAT
63987854 GGGCAGGCCG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
10 1 0.04
11 17 0.71
12 6 0.25
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
ATATAAAAATTA
Found at i:63989551 original size:19 final size:19
Alignment explanation
Indices: 63989527--63989563 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
63989517 CTTAAAATTC
63989527 AAAATTTT-AATTTTGATTA
1 AAAATTTTGAA-TTTGATTA
63989546 AAAATTTTGAATTTGATT
1 AAAATTTTGAATTTGATT
63989564 GAGGCATCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (19 bp):
AAAATTTTGAATTTGATTA
Found at i:63990149 original size:19 final size:18
Alignment explanation
Indices: 63990125--63990160 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
63990115 CCTAACTTTT
63990125 GTGATTCGATTTCGATTTG
1 GTGATTCGATTTC-ATTTG
*
63990144 GTGATTGGATTTCATTT
1 GTGATTCGATTTCATTT
63990161 TTTGTTTGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.17, C:0.08, G:0.25, T:0.50
Consensus pattern (18 bp):
GTGATTCGATTTCATTTG
Found at i:63993177 original size:68 final size:68
Alignment explanation
Indices: 63993082--63993239 Score: 194
Period size: 68 Copynumber: 2.3 Consensus size: 68
63993072 AAAACGGGGA
* * * * * *
63993082 AGTCCGTTAGGACATTAAA-ATTTGGGATTATAGGTATAAGACCATAGCTCAACTATGACATCCA
1 AGTCCGCTAGGACATTAAACA-TAGGGATTACAAGTATAAGACCATAACTCAACTATGACAACCA
63993146 ATAG
65 ATAG
* * * *
63993150 AGTCTGCTAGGACATTAAACATAGGGATTACAAGTGTAAGACCATAACTCCACTATGGCAACCAA
1 AGTCCGCTAGGACATTAAACATAGGGATTACAAGTATAAGACCATAACTCAACTATGACAACCAA
63993215 TAG
66 TAG
63993218 AGTCCGCTA-GAGCATTAAACAT
1 AGTCCGCTAGGA-CATTAAACAT
63993240 GGGGTATGAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
67 2 0.03
68 74 0.96
69 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (68 bp):
AGTCCGCTAGGACATTAAACATAGGGATTACAAGTATAAGACCATAACTCAACTATGACAACCAA
TAG
Found at i:63999559 original size:46 final size:46
Alignment explanation
Indices: 63999507--63999734 Score: 359
Period size: 46 Copynumber: 5.0 Consensus size: 46
63999497 AGTGTGCTCT
63999507 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
63999553 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
63999599 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
63999645 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
63999691 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
63999735 TCATGTCAAA
Statistics
Matches: 169, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 1 0.01
46 168 0.99
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:64004334 original size:67 final size:67
Alignment explanation
Indices: 64004149--64004376 Score: 237
Period size: 67 Copynumber: 3.4 Consensus size: 67
64004139 CCGCTGGGAT
* * * ** * * *
64004149 AGTAAACACAAGGTATGTTGTGTAAGATCATGGCTTGGCTATGGTGACATAAACAGTTTGTCAGG
1 AGTAAACACAGGGTATGTTGTGTAAGACCATAGCTTGGCTATGGAAACATAGAGAGTCTGTCAGG
64004214 AC
66 AC
* * * * *
64004216 AATAAACACAGGGTATGTTGTCTAAGACCATAGCTCGACTAT-AACAACATAGAGAGTCTGTCAG
1 AGTAAACACAGGGTATGTTGTGTAAGACCATAGCTTGGCTATGGA-AACATAGAGAGTCTGTCAG
64004280 GAC
65 GAC
* * ** *
64004283 AGTAAACATAGGGTATGATGTGTAAGACCATAGCTTGGCTATGGAAACATAGAGAGTCCATCAAG
1 AGTAAACACAGGGTATGTTGTGTAAGACCATAGCTTGGCTATGGAAACATAGAGAGTCTGTCAGG
64004348 AC
66 AC
* *
64004350 AG-AAA-ACATGTGTATGTTCTGTAAGAC
1 AGTAAACACA-GGGTATGTTGTGTAAGAC
64004377 TATAACTCGT
Statistics
Matches: 131, Mismatches: 27, Indels: 7
0.79 0.16 0.04
Matches are distributed among these distances:
65 2 0.02
66 18 0.14
67 110 0.84
68 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (67 bp):
AGTAAACACAGGGTATGTTGTGTAAGACCATAGCTTGGCTATGGAAACATAGAGAGTCTGTCAGG
AC
Found at i:64006317 original size:46 final size:46
Alignment explanation
Indices: 64006264--64006438 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
64006254 TATTTGGGCA
64006264 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
64006310 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
64006355 CATCCGAACTC-TTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
64006402 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64006439 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 11 0.10
46 72 0.67
47 13 0.12
49 5 0.05
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:64006418 original size:92 final size:93
Alignment explanation
Indices: 64006260--64006431 Score: 301
Period size: 92 Copynumber: 1.9 Consensus size: 93
64006250 GGGATATTTG
*
64006260 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAG
64006325 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
64006353 GGCATCCGAACTC-TTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAG
64006417 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
64006432 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 62 0.83
93 13 0.17
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:64006780 original size:138 final size:138
Alignment explanation
Indices: 64006532--64006790 Score: 473
Period size: 138 Copynumber: 1.9 Consensus size: 138
64006522 ACGGGTAAAG
* *
64006532 TTCTATTCAAATGGGGGAATACTCGAGATGAAAAGAATGTATTGGTAAGTGTTGTGAAATGGATA
1 TTCTACTCAAATGGAGGAATACTCGAGATGAAAAGAATGTATTGGTAAGTGTTGTGAAATGGATA
*
64006597 CTTTGAACAAGTATGTACTTAACCCTCAGGTTGAAAACTCAATATAACAATAATATAACACATCG
66 CTTTGAACAAGTATGTACTTAACCCTCAGGTTGAAAACTCAATATAACAACAATATAACACATCG
64006662 GAATATAA
131 GAATATAA
*
64006670 TTCTACTCAAATGGAGGAATACTCGAGATGAAAGGAATGTATTGGTAAGTGTTGTGAAATGGATA
1 TTCTACTCAAATGGAGGAATACTCGAGATGAAAAGAATGTATTGGTAAGTGTTGTGAAATGGATA
*
64006735 CTTTGAACAAGTATGTACTTAACCCTCGGGTTGAAAACTCAATATAACAACAATAT
66 CTTTGAACAAGTATGTACTTAACCCTCAGGTTGAAAACTCAATATAACAACAATAT
64006791 GGTAAGATGA
Statistics
Matches: 116, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
138 116 1.00
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.29
Consensus pattern (138 bp):
TTCTACTCAAATGGAGGAATACTCGAGATGAAAAGAATGTATTGGTAAGTGTTGTGAAATGGATA
CTTTGAACAAGTATGTACTTAACCCTCAGGTTGAAAACTCAATATAACAACAATATAACACATCG
GAATATAA
Found at i:64009784 original size:41 final size:41
Alignment explanation
Indices: 64009738--64009818 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
64009728 TTGTTGCAAC
*
64009738 ATTGAGAAATGAAGTTTTCAATTTTTAGTTTGTTTTCTTCG
1 ATTGAGAAATGAAGTTTTCAATTTTTAGTTTGTTTGCTTCG
64009779 ATTGAGAAATGAAGTTTTCAATTTTTAGTTTGTTTGCTTC
1 ATTGAGAAATGAAGTTTTCAATTTTTAGTTTGTTTGCTTC
64009819 TGCTGCTGCT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.25, C:0.07, G:0.17, T:0.51
Consensus pattern (41 bp):
ATTGAGAAATGAAGTTTTCAATTTTTAGTTTGTTTGCTTCG
Found at i:64009929 original size:21 final size:21
Alignment explanation
Indices: 64009905--64009969 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
64009895 TGGATTTCAT
64009905 TTACTTTGATGCATTAGGTCC
1 TTACTTTGATGCATTAGGTCC
* *
64009926 TTACTTGGTTAGC-TTA--T--
1 TTACTTTGAT-GCATTAGGTCC
64009943 TTACTTTGATGCATTAGGTCC
1 TTACTTTGATGCATTAGGTCC
64009964 TTACTT
1 TTACTT
64009970 GGTTAGCTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
16 2 0.06
17 11 0.32
19 2 0.06
21 17 0.50
22 2 0.06
ACGTcount: A:0.18, C:0.17, G:0.17, T:0.48
Consensus pattern (21 bp):
TTACTTTGATGCATTAGGTCC
Found at i:64009954 original size:38 final size:38
Alignment explanation
Indices: 64009903--64009979 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
64009893 TATGGATTTC
64009903 ATTTACTTTGATGCATTAGGTCCTTACTTGGTTAGCTT
1 ATTTACTTTGATGCATTAGGTCCTTACTTGGTTAGCTT
64009941 ATTTACTTTGATGCATTAGGTCCTTACTTGGTTAGCTT
1 ATTTACTTTGATGCATTAGGTCCTTACTTGGTTAGCTT
64009979 A
1 A
64009980 CTTAGTTATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.19, C:0.16, G:0.18, T:0.47
Consensus pattern (38 bp):
ATTTACTTTGATGCATTAGGTCCTTACTTGGTTAGCTT
Found at i:64011866 original size:20 final size:19
Alignment explanation
Indices: 64011841--64011888 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
64011831 CTTTTTTAGA
**
64011841 TTTTAATTTAATCCCTTTAT
1 TTTTAATTTAAT-AATTTAT
64011861 TTTTAAATTTAATAATTTAT
1 TTTT-AATTTAATAATTTAT
64011881 TTTTAATT
1 TTTTAATT
64011889 GGTCAACTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 4 0.16
20 13 0.52
21 8 0.32
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTAATTTAATAATTTAT
Found at i:64015605 original size:25 final size:25
Alignment explanation
Indices: 64015577--64015628 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
64015567 TTAATTATTT
64015577 TTTCATATTTTATAAAATTGTTTAG
1 TTTCATATTTTATAAAATTGTTTAG
64015602 TTTCATATTTTATAAAATTGTTTAG
1 TTTCATATTTTATAAAATTGTTTAG
64015627 TT
1 TT
64015629 AAAAAGAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.31, C:0.04, G:0.08, T:0.58
Consensus pattern (25 bp):
TTTCATATTTTATAAAATTGTTTAG
Found at i:64015655 original size:20 final size:20
Alignment explanation
Indices: 64015630--64015675 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
64015620 TGTTTAGTTA
*
64015630 AAAAGAAGATAAAGTAAAGG
1 AAAAGAAGAGAAAGTAAAGG
64015650 AAAAGAAGAGAAAGTAAAGG
1 AAAAGAAGAGAAAGTAAAGG
64015670 AAAAGA
1 AAAAGA
64015676 GAAGTGCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.67, C:0.00, G:0.26, T:0.07
Consensus pattern (20 bp):
AAAAGAAGAGAAAGTAAAGG
Found at i:64016323 original size:16 final size:15
Alignment explanation
Indices: 64016263--64016323 Score: 54
Period size: 16 Copynumber: 4.0 Consensus size: 15
64016253 AATAATAAAA
*
64016263 ATATTATTACATTTT
1 ATATTATTAAATTTT
*
64016278 TTATT-TT-AATTATT
1 ATATTATTAAATT-TT
*
64016292 ATAATTATTAATTTTT
1 AT-ATTATTAAATTTT
64016308 AATATTATTAAATTTT
1 -ATATTATTAAATTTT
64016324 TTATGTTTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 9
0.72 0.10 0.18
Matches are distributed among these distances:
13 3 0.08
14 5 0.14
15 7 0.19
16 16 0.44
17 5 0.14
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (15 bp):
ATATTATTAAATTTT
Found at i:64017685 original size:20 final size:20
Alignment explanation
Indices: 64017648--64017686 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
64017638 TTCCCTAATA
*
64017648 CAGAGCCACACGAGCGTGTC
1 CAGAGCCACACGACCGTGTC
*
64017668 CAGAGCCACACGTCCGTGT
1 CAGAGCCACACGACCGTGT
64017687 AAGACAGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.36, G:0.28, T:0.13
Consensus pattern (20 bp):
CAGAGCCACACGACCGTGTC
Found at i:64019226 original size:40 final size:40
Alignment explanation
Indices: 64019117--64019324 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
64019107 TCTTCGAAAT
* * * *
64019117 TTAG-CCGAATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
64019156 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * * *
64019196 TTAGCCCAGATATAA-CAACTCGCACGAATGCCTTTGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
** *
64019236 TTAGCCCGGATATAATCACTAGCTTAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
64019276 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
64019316 TTAGCCCGG
1 TTAGCCCGG
64019325 GTATCATTCA
Statistics
Matches: 139, Mismatches: 27, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
39 3 0.02
40 135 0.97
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:64021346 original size:15 final size:16
Alignment explanation
Indices: 64021326--64021358 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
64021316 ATATATTTTT
64021326 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
64021341 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
64021358 T
1 T
64021359 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:64021444 original size:22 final size:22
Alignment explanation
Indices: 64021405--64021463 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
64021395 GTTTTAAAAA
*
64021405 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
64021426 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
64021448 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
64021464 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:64021480 original size:26 final size:24
Alignment explanation
Indices: 64021434--64021493 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
64021424 ATTTGTTTTA
*
64021434 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
64021458 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
64021484 TTTTTTATTT
1 ATATTTATTT
64021494 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:64024150 original size:40 final size:40
Alignment explanation
Indices: 64024090--64024253 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
64024080 CGGGATTCAA
* ** *
64024090 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
64024130 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
64024170 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * * *
64024210 CCGGATATAATC-ACTAGCATAAATGCCTTCGAGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
64024250 CCGG
1 CCGG
64024254 GTATCATTCA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 99 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:64024237 original size:80 final size:80
Alignment explanation
Indices: 64024090--64024253 Score: 195
Period size: 80 Copynumber: 2.0 Consensus size: 80
64024080 CGGGATTCAA
* * ** * *
64024090 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
* *
64024155 CCTTCGGGTCTTAGC
66 CCTTCGAGACTTAGC
** * * *
64024170 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
64024234 GCCTTCGAGACTTAGC
65 GCCTTCGAGACTTAGC
64024250 CCGG
1 CCGG
64024254 GTATCATTCA
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
80 68 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGAGACTTAGC
Found at i:64032268 original size:40 final size:40
Alignment explanation
Indices: 64032208--64032371 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
64032198 CGGGATTCAA
* ** *
64032208 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
64032248 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
64032288 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * * *
64032328 CCGGATATAATC-ACTAGCATAAATGCCTTCGAGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
64032368 CCGG
1 CCGG
64032372 GTATCATTCA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 99 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:64032355 original size:80 final size:80
Alignment explanation
Indices: 64032208--64032371 Score: 195
Period size: 80 Copynumber: 2.0 Consensus size: 80
64032198 CGGGATTCAA
* * ** * *
64032208 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
* *
64032273 CCTTCGGGTCTTAGC
66 CCTTCGAGACTTAGC
** * * *
64032288 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
64032352 GCCTTCGAGACTTAGC
65 GCCTTCGAGACTTAGC
64032368 CCGG
1 CCGG
64032372 GTATCATTCA
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
80 68 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGAGACTTAGC
Found at i:64034616 original size:44 final size:44
Alignment explanation
Indices: 64034551--64034634 Score: 141
Period size: 44 Copynumber: 1.9 Consensus size: 44
64034541 CATGTATCGA
*
64034551 ATCCATAATGAACTCAAACCAACTCAACGAGCTCGGATGCTCGC
1 ATCCATAATGAACTCAAACCAACTCAACAAGCTCGGATGCTCGC
* *
64034595 ATCCATAATGAACTCAGACCAACTCAACAAGCTTGGATGC
1 ATCCATAATGAACTCAAACCAACTCAACAAGCTCGGATGC
64034635 CTTATACATA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.36, C:0.30, G:0.15, T:0.19
Consensus pattern (44 bp):
ATCCATAATGAACTCAAACCAACTCAACAAGCTCGGATGCTCGC
Found at i:64043021 original size:44 final size:44
Alignment explanation
Indices: 64042954--64043084 Score: 151
Period size: 44 Copynumber: 3.0 Consensus size: 44
64042944 AGTACATGTA
*
64042954 TCGCATCCATAATGAACTGGGACCAACTCAACGAGCTT-GGATGC
1 TCGCATCCATAATGAACTCGGACCAACTCAACGAG-TTCGGATGC
64042998 TCGCATCCATAATGAACTCGGACCAACTCAACGAGTTCGGATGC
1 TCGCATCCATAATGAACTCGGACCAACTCAACGAGTTCGGATGC
* * * * *
64043042 -CTCATACATATCACGAAC-CTGGACCAACTAAACGAGTTAGGAT
1 TCGCATCCATA--ATGAACTC-GGACCAACTCAACGAGTTCGGAT
64043085 TTCTAAATTC
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
43 10 0.13
44 41 0.53
45 26 0.34
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (44 bp):
TCGCATCCATAATGAACTCGGACCAACTCAACGAGTTCGGATGC
Found at i:64053791 original size:48 final size:48
Alignment explanation
Indices: 64053728--64053825 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
64053718 TATCACGTAC
*
64053728 TTAAACCATTAGGCTTTCATATGGCATTTCACACCAATTTCATATCTA
1 TTAAACCATTAGGCTTTCATATGGCATTCCACACCAATTTCATATCTA
64053776 TTAAACCATTAGGCTTTCATATGGCATTCCACACCAATTTCATATCTA
1 TTAAACCATTAGGCTTTCATATGGCATTCCACACCAATTTCATATCTA
64053824 TT
1 TT
64053826 CATCGTTATA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (48 bp):
TTAAACCATTAGGCTTTCATATGGCATTCCACACCAATTTCATATCTA
Found at i:64056892 original size:76 final size:75
Alignment explanation
Indices: 64056785--64057097 Score: 225
Period size: 76 Copynumber: 4.1 Consensus size: 75
64056775 TGCCCTGCAC
* ** * * *
64056785 TAGTCGGATAAACTGATAATGTTTTGCGCCCAATGCTAGTTGGATAAATCGACGATATCAAATAT
1 TAGTTGGATAAAC-GATAATGAGTTGTGCCCAACGCTAGTTGGGTAAATCGACGATATCAAATAT
64056850 ACG-GCC-AGCAA
65 --GTGCCAAGCAA
* * * * *
64056861 TAGTTGGATAAATCGATAATGAGTTGTGCCCAGCGCTAGTTGGGTAAACCAATGATATCAAATGT
1 TAGTTGGATAAA-CGATAATGAGTTGTGCCCAACGCTAGTTGGGTAAATCGACGATATCAAATAT
*
64056926 GTGCCAAGCAT
65 GTGCCAAGCAA
* * * * * * * *
64056937 TAGTTGGATGTACCAACAATGAGTTATGCCCAACACTAGTTGGGTCAATCGACGATATCAAATGT
1 TAGTTGGAT-AAACGATAATGAGTTGTGCCCAACGCTAGTTGGGTAAATCGACGATATCAAATAT
* *
64057002 GTGCCCAGCAC
65 GTGCCAAGCAA
* * * * * ** ** * * *
64057013 TAGTTGGATGTATCAACATTGAGTTACGCCCAACGCTAGACGTGTAAACCGACGATATCAAATGT
1 TAGTTGGAT-AAACGATAATGAGTTGTGCCCAACGCTAGTTGGGTAAATCGACGATATCAAATAT
* * *
64057078 ATGCCTAGCAC
65 GTGCCAAGCAA
64057089 TAGTTGGAT
1 TAGTTGGAT
64057098 GTACCAACAA
Statistics
Matches: 197, Mismatches: 36, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
74 1 0.01
75 3 0.02
76 191 0.97
77 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (75 bp):
TAGTTGGATAAACGATAATGAGTTGTGCCCAACGCTAGTTGGGTAAATCGACGATATCAAATATG
TGCCAAGCAA
Found at i:64057098 original size:76 final size:76
Alignment explanation
Indices: 64056902--64057113 Score: 289
Period size: 76 Copynumber: 2.8 Consensus size: 76
64056892 AGCGCTAGTT
* * * *
64056902 GGGTAAACCAATGATATCAAATGTGTGCCAAGCATTAGTTGGATGTACCAACAATGAGTTATGCC
1 GGGTAAACCGACGATATCAAATGTGTGCCAAGCACTAGTTGGATGTACCAACAATGAGTTACGCC
**
64056967 CAACACTAGTT
66 CAACACTAGAC
* * * * *
64056978 GGGTCAATCGACGATATCAAATGTGTGCCCAGCACTAGTTGGATGTATCAACATTGAGTTACGCC
1 GGGTAAACCGACGATATCAAATGTGTGCCAAGCACTAGTTGGATGTACCAACAATGAGTTACGCC
*
64057043 CAACGCTAGAC
66 CAACACTAGAC
* * *
64057054 GTGTAAACCGACGATATCAAATGTATGCCTAGCACTAGTTGGATGTACCAACAATGAGTT
1 GGGTAAACCGACGATATCAAATGTGTGCCAAGCACTAGTTGGATGTACCAACAATGAGTT
64057114 GCACCTAGCA
Statistics
Matches: 117, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
76 117 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.25
Consensus pattern (76 bp):
GGGTAAACCGACGATATCAAATGTGTGCCAAGCACTAGTTGGATGTACCAACAATGAGTTACGCC
CAACACTAGAC
Found at i:64057128 original size:152 final size:152
Alignment explanation
Indices: 64056820--64057113 Score: 381
Period size: 152 Copynumber: 1.9 Consensus size: 152
64056810 GCGCCCAATG
* * *
64056820 CTAGTTGGATAAATCGACGATATCAAATATACGGCCAGCAATAGTTGGATAAATCGATAATGAGT
1 CTAGTTGGATAAATCGACGATATCAAATATACGCCCAGCAATAGTTGGATAAATCAACAATGAGT
** * ** * * *
64056885 TGTGCCCAGCGCTAGTTGGGTAAACCAATGATATCAAATGTGTGCCAAGCATTAGTTGGATGTAC
66 TACGCCCAACGCTAGACGGGTAAACCAACGATATCAAATGTATGCCAAGCACTAGTTGGATGTAC
64056950 CAACAATGAGTTATGCCCAACA
131 CAACAATGAGTTATGCCCAACA
* * * ** * ** *
64056972 CTAGTTGGGTCAATCGACGATATCAAATGTGTGCCCAGCACTAGTTGGATGTATCAACATTGAGT
1 CTAGTTGGATAAATCGACGATATCAAATATACGCCCAGCAATAGTTGGATAAATCAACAATGAGT
* * *
64057037 TACGCCCAACGCTAGACGTGTAAACCGACGATATCAAATGTATGCCTAGCACTAGTTGGATGTAC
66 TACGCCCAACGCTAGACGGGTAAACCAACGATATCAAATGTATGCCAAGCACTAGTTGGATGTAC
64057102 CAACAATGAGTT
131 CAACAATGAGTT
64057114 GCACCTAGCA
Statistics
Matches: 119, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
152 119 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (152 bp):
CTAGTTGGATAAATCGACGATATCAAATATACGCCCAGCAATAGTTGGATAAATCAACAATGAGT
TACGCCCAACGCTAGACGGGTAAACCAACGATATCAAATGTATGCCAAGCACTAGTTGGATGTAC
CAACAATGAGTTATGCCCAACA
Found at i:64058442 original size:21 final size:22
Alignment explanation
Indices: 64058413--64058453 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
64058403 AACTCACTTA
*
64058413 AACTTAAATAATC-ATTCAATT
1 AACTAAAATAATCAATTCAATT
*
64058434 AACTAAAATTATCAATTCAA
1 AACTAAAATAATCAATTCAA
64058454 ATTTTACTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (22 bp):
AACTAAAATAATCAATTCAATT
Found at i:64063524 original size:18 final size:18
Alignment explanation
Indices: 64063494--64063546 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
64063484 TTCTAGCATG
64063494 GAAGAACAAGATGAAGAT
1 GAAGAACAAGATGAAGAT
*
64063512 GAAG-ACAATGATGGAGAT
1 GAAGAACAA-GATGAAGAT
*
64063530 GAA-AACCAAGATCAAGA
1 GAAGAA-CAAGATGAAGA
64063547 GCATGATAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 4 0.14
18 22 0.76
19 3 0.10
ACGTcount: A:0.53, C:0.09, G:0.26, T:0.11
Consensus pattern (18 bp):
GAAGAACAAGATGAAGAT
Found at i:64063848 original size:75 final size:75
Alignment explanation
Indices: 64063765--64064014 Score: 314
Period size: 76 Copynumber: 3.4 Consensus size: 75
64063755 AAACTGTTTT
64063765 ATGAAAAAGTTGTTTGTATTGTATTTTTTGTTCATTTTACATCAATAAGATACTTATTTACAATT
1 ATGAAAAAGTTGTTTGTATTGTATTTTTTGTTCATTTTACATCAATAAGATACTTATTTACAATT
64063830 TATGAAAAAA
66 TATGAAAAAA
*
64063840 ATGAAAAAGTTGTTTGCATTGTACTTTTTTGTTCATTTTACATCAATAAGATACTTATTTACAAT
1 ATGAAAAAGTTGTTTGTATTGTA-TTTTTTGTTCATTTTACATCAATAAGATACTTATTTACAAT
64063905 TTATGAAAAAA
65 TTATGAAAAAA
* * * * ** * *
64063916 ATGAAAAATTTGTTGGTA---TATTGTATTG-T-ATTTTTACATCAACAATTTACTTATTTATAG
1 ATGAAAAAGTTGTTTGTATTGTATT-TTTTGTTCA-TTTTACATCAATAAGATACTTATTTACAA
64063976 TTTATG-AAAAA
64 TTTATGAAAAAA
* * * *
64063987 ATGAAAAAATCGTTTATATTATATTTTT
1 ATGAAAAAGTTGTTTGTATTGTATTTTT
64064015 ACATTAATAA
Statistics
Matches: 154, Mismatches: 15, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
71 20 0.13
72 33 0.21
73 8 0.05
74 4 0.03
75 22 0.14
76 67 0.44
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.46
Consensus pattern (75 bp):
ATGAAAAAGTTGTTTGTATTGTATTTTTTGTTCATTTTACATCAATAAGATACTTATTTACAATT
TATGAAAAAA
Found at i:64063995 original size:72 final size:65
Alignment explanation
Indices: 64063875--64064062 Score: 191
Period size: 64 Copynumber: 2.8 Consensus size: 65
64063865 TTTTTGTTCA
* * * *
64063875 TTTTACATCAATAAGATACTTATTTACAATTTATGAAAAAAATG-AAAAATTTGTTGGTATATTG
1 TTTTACATCAATAATATACTTATTTATAGTTTATG-AAAAAATGAAAAAATTCGTT--TATA-T-
64063939 TATTGTAT
61 TA---TAT
* *
64063947 TTTTACATCAACAATTTACTTATTTATAGTTTATGAAAAAATGAAAAAA-TCGTTTATATTATAT
1 TTTTACATCAATAATATACTTATTTATAGTTTATGAAAAAATGAAAAAATTCGTTTATATTATAT
* ***
64064011 TTTTACATTAATAATATACTTATTTATAGTTTACCCAAAAATGGAAAAAATT
1 TTTTACATCAATAATATACTTATTTATAGTTTATGAAAAAAT-GAAAAAATT
64064063 AATAATTTTT
Statistics
Matches: 101, Mismatches: 12, Indels: 12
0.81 0.10 0.10
Matches are distributed among these distances:
64 39 0.39
65 7 0.07
66 1 0.01
67 2 0.02
68 1 0.01
69 4 0.04
71 12 0.12
72 35 0.35
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.43
Consensus pattern (65 bp):
TTTTACATCAATAATATACTTATTTATAGTTTATGAAAAAATGAAAAAATTCGTTTATATTATAT
Found at i:64065969 original size:39 final size:39
Alignment explanation
Indices: 64065900--64066156 Score: 372
Period size: 39 Copynumber: 6.5 Consensus size: 39
64065890 ACAAAGCATG
* * * *
64065900 CGGGACTTTAAGCCTGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
64065940 CGGGTCTTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
64065980 CGGGACTTAGCCCGGATATGACAGCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
64066019 CGGGACTTAGCCTGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
64066058 CGGGACTCAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* **
64066097 TGGGACTTAGCTTGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
64066136 CGGGACTTAGCCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
64066157 TTCTCCATTA
Statistics
Matches: 196, Mismatches: 20, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
39 177 0.90
40 19 0.10
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:64066182 original size:2 final size:2
Alignment explanation
Indices: 64066175--64066204 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
64066165 TATCATGCAC
64066175 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64066205 CATAACACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64072503 original size:39 final size:39
Alignment explanation
Indices: 64072417--64072573 Score: 183
Period size: 39 Copynumber: 4.0 Consensus size: 39
64072407 CAAATCCAAT
* * *
64072417 CACCACCAC-AAAGCATGCGGGACTTTAAGCCTGGATATAA
1 CACCAGCACGAAAGCCTGCGGGAC-TT-AGCCCGGATATAA
* *
64072457 TACCAGCAC-AAAGCCTGCGAGACTTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTGCGGGAC-TTAGCCCGGATATAA
* *
64072496 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTGCGGGACTTAGCCCGGATATAA
* * *
64072535 CACCAGAACGAATGCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTGCGGGACTTAGCCCGGATATAA
64072574 TTCTCCATTA
Statistics
Matches: 106, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 73 0.69
40 33 0.31
ACGTcount: A:0.32, C:0.29, G:0.22, T:0.18
Consensus pattern (39 bp):
CACCAGCACGAAAGCCTGCGGGACTTAGCCCGGATATAA
Found at i:64072599 original size:2 final size:2
Alignment explanation
Indices: 64072592--64072649 Score: 107
Period size: 2 Copynumber: 29.0 Consensus size: 2
64072582 TATCATGCAC
*
64072592 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64072634 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
64072650 CATAACACAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:64076336 original size:39 final size:39
Alignment explanation
Indices: 64076231--64076542 Score: 518
Period size: 39 Copynumber: 8.0 Consensus size: 39
64076221 ATTATATTAT
* *
64076231 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
64076270 TAGCACGAAG-CTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
64076308 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
64076347 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
64076386 CAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
64076425 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
64076464 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
64076503 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
64076542 C
1 C
64076543 GGTGTCTTGC
Statistics
Matches: 256, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
38 35 0.14
39 221 0.86
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:64078642 original size:59 final size:59
Alignment explanation
Indices: 64078550--64078667 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
64078540 AAGCTCTATA
64078550 ATACTTTACAAGTTTATAAGTATAAAAAGTGGGATAGCCTATTGCTTTACAAAGGATTT
1 ATACTTTACAAGTTTATAAGTATAAAAAGTGGGATAGCCTATTGCTTTACAAAGGATTT
64078609 ATACTTTACAAGTTTATAAGTATAAAAAGTGGGATAGCCTATTGCTTTACAAAGGATTT
1 ATACTTTACAAGTTTATAAGTATAAAAAGTGGGATAGCCTATTGCTTTACAAAGGATTT
64078668 GCCTTTTCAA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (59 bp):
ATACTTTACAAGTTTATAAGTATAAAAAGTGGGATAGCCTATTGCTTTACAAAGGATTT
Found at i:64080342 original size:48 final size:48
Alignment explanation
Indices: 64080196--64080381 Score: 195
Period size: 48 Copynumber: 4.0 Consensus size: 48
64080186 CATTAGGGTT
* * * *
64080196 ATATGCGATCCCATGCAAGACCATGTCTGGGACATGGCTTTGGTATCG
1 ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
* ** * *
64080244 ATATGTAATTACGTGTAAGACCATAG-CTGGG-C-T---ATTGGCATCA
1 ATATGTGATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCG
64080287 ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
1 ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
* * * * *
64080335 TTATGTGATCCCATGTAAGACCATATATGGGATATGGCATTTGCATC
1 ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
64080382 CTAACATATG
Statistics
Matches: 112, Mismatches: 19, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
42 1 0.01
43 32 0.29
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 74 0.66
49 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (48 bp):
ATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG
Found at i:64085594 original size:158 final size:158
Alignment explanation
Indices: 64085306--64085621 Score: 605
Period size: 158 Copynumber: 2.0 Consensus size: 158
64085296 AACAAAAATT
64085306 TTGAATAATTTTCATTAACTATAATTAAACCTTGCATGCTTCATTTTCGAAAACAAAAATTTTAA
1 TTGAATAATTTTCATTAACTATAATTAAACCTTGCATGCTTCATTTTCGAAAACAAAAATTTTAA
* *
64085371 AATGTGGGTGCATTTCCAAGCCCTATGTGCATTCGCCCAAACTTAAAGTTTGCATTGTCCCCAAT
66 AATGTGGGTGCATTTCCAAGCCCCATGTGCATTCCCCCAAACTTAAAGTTTGCATTGTCCCCAAT
64085436 GCACTAACATGAAAATATAATAACAATA
131 GCACTAACATGAAAATATAATAACAATA
64085464 TTGAATAATTTTCATTAACTATAATTAAACCTTGCATGCTTCATTTTCGAAAACAAAAATTTTAA
1 TTGAATAATTTTCATTAACTATAATTAAACCTTGCATGCTTCATTTTCGAAAACAAAAATTTTAA
64085529 AATGTGGGTGCATTTCCAAGCCCCATGTGCATTCCCCCAAACTTAAAGTTTGCATTGTCCCCAAT
66 AATGTGGGTGCATTTCCAAGCCCCATGTGCATTCCCCCAAACTTAAAGTTTGCATTGTCCCCAAT
*
64085594 GCACTAACATGAAAATATAATGACAATA
131 GCACTAACATGAAAATATAATAACAATA
64085622 AAAATGAAAT
Statistics
Matches: 155, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
158 155 1.00
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (158 bp):
TTGAATAATTTTCATTAACTATAATTAAACCTTGCATGCTTCATTTTCGAAAACAAAAATTTTAA
AATGTGGGTGCATTTCCAAGCCCCATGTGCATTCCCCCAAACTTAAAGTTTGCATTGTCCCCAAT
GCACTAACATGAAAATATAATAACAATA
Found at i:64086099 original size:21 final size:21
Alignment explanation
Indices: 64086073--64086123 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
64086063 ACATTTTTAG
*
64086073 CAACTTCTTCTTCTTCAGCAA
1 CAACTTCTTCTTCTACAGCAA
* *
64086094 CAACTTCCTCTTCTACAGCAG
1 CAACTTCTTCTTCTACAGCAA
64086115 CAACTTCTT
1 CAACTTCTT
64086124 TCTCAACAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.24, C:0.35, G:0.06, T:0.35
Consensus pattern (21 bp):
CAACTTCTTCTTCTACAGCAA
Found at i:64092052 original size:33 final size:33
Alignment explanation
Indices: 64092014--64092081 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
64092004 ACCTTAAATT
* *
64092014 CTCGAATGGAATATGAATTCCCTTGTACGAGAG
1 CTCGAATGAAAGATGAATTCCCTTGTACGAGAG
*
64092047 CTCGAATGAAAGATGAATTCCCTTGTACGATAG
1 CTCGAATGAAAGATGAATTCCCTTGTACGAGAG
64092080 CT
1 CT
64092082 TCTGTGTGAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (33 bp):
CTCGAATGAAAGATGAATTCCCTTGTACGAGAG
Found at i:64096069 original size:12 final size:12
Alignment explanation
Indices: 64096052--64096076 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64096042 AGGCCTCTTG
64096052 AAAGTAATTCTA
1 AAAGTAATTCTA
64096064 AAAGTAATTCTA
1 AAAGTAATTCTA
64096076 A
1 A
64096077 GTTATGCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.32
Consensus pattern (12 bp):
AAAGTAATTCTA
Found at i:64099517 original size:29 final size:29
Alignment explanation
Indices: 64099485--64099557 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
64099475 CTTCGAGCTC
*
64099485 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
64099514 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
64099543 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
64099558 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:64099686 original size:2 final size:2
Alignment explanation
Indices: 64099679--64099707 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
64099669 CATTTTCATT
64099679 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
64099708 CATCTCATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:64104766 original size:26 final size:26
Alignment explanation
Indices: 64104749--64104798 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
64104739 TAAAATCATT
64104749 AAAATTTTACTAGGGGTAAAATAGTC
1 AAAATTTTACTAGGGGTAAAATAGTC
* *
64104775 AAAATTTTATTGGGGGTAAAATAG
1 AAAATTTTACTAGGGGTAAAATAG
64104799 GGATAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.42, C:0.04, G:0.22, T:0.32
Consensus pattern (26 bp):
AAAATTTTACTAGGGGTAAAATAGTC
Found at i:64109760 original size:47 final size:47
Alignment explanation
Indices: 64109608--64109781 Score: 178
Period size: 47 Copynumber: 3.7 Consensus size: 47
64109598 TGTAACCCGC
* *** *
64109608 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGGGGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACAGTTCACAT
*
64109654 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCTGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GAC-AGTTCACAT
* * *
64109704 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACAGTTCACAT
* *
64109748 CCATAAGTGAACTCAGACTCAACTCAATGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
64109782 GGATGCTCAA
Statistics
Matches: 106, Mismatches: 13, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
43 3 0.03
44 6 0.06
45 2 0.02
46 35 0.33
47 50 0.47
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.23
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACAGTTCACAT
Found at i:64109780 original size:94 final size:93
Alignment explanation
Indices: 64109616--64109787 Score: 254
Period size: 94 Copynumber: 1.8 Consensus size: 93
64109606 GCCCATAAGT
*** * *
64109616 GAACTCGGACTCAACTCAACGAGCTCGGGGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGACAGTTCACATCCATAAGTGAACTCAGACTCAACTCAA
*
64109681 CGAGTTCTGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
64109709 GAACTCGGACTCAACTCAACGAGTTCAGACATTTCACATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GACAGTTCACATCCATAAGTGAACTCAGACTCAACTCA
*
64109774 ATGAGTTCGGATGC
65 ACGAGTTCGGATGC
64109788 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
93 25 0.36
94 44 0.64
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGACAGTTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64111566 original size:46 final size:44
Alignment explanation
Indices: 64111389--64111566 Score: 173
Period size: 46 Copynumber: 3.9 Consensus size: 44
64111379 ATAGGTTATT
* * *
64111389 ATGAGCTAGTGTAAGACCATGTCTTGGACATGGCATCGTCATTGA-GACG
1 ATGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC--T-ACGA-G
* * *
64111438 A-GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCT-CAAG
1 ATGAGCCAGTGTAAGACATGTCTGGGACATGCATC-GGCTACGAG
64111481 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAG
1 ATG--AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAG
*
64111527 ATGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 ATGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
64111567 ATCCTACCCC
Statistics
Matches: 114, Mismatches: 7, Indels: 19
0.81 0.05 0.14
Matches are distributed among these distances:
43 2 0.02
44 15 0.13
45 17 0.15
46 50 0.44
47 15 0.13
48 14 0.12
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (44 bp):
ATGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAG
Found at i:64112737 original size:21 final size:22
Alignment explanation
Indices: 64112698--64112738 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
64112688 TCGAATCTGT
64112698 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCGTGTTGCCCCTCC
*
64112720 CACATGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
64112739 GTGTCTAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTCC
Found at i:64116964 original size:29 final size:29
Alignment explanation
Indices: 64116874--64117033 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
64116864 ACTCGATTTC
* * **
64116874 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
64116903 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
64116931 CGCACACCTAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
64116961 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
*
64116990 GCACACTTAGTGCCATATATTTCCAGTAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
64117019 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
64117034 ATCTCGTCAC
Statistics
Matches: 112, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
28 2 0.02
29 109 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:64120358 original size:93 final size:93
Alignment explanation
Indices: 64120227--64120397 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
64120217 GCCCATAAGT
* * *
64120227 GAACTCGGACTCAACTCAATGAGCTCGAGCATTCGCATCTATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64120292 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
64120320 GAACTCGAACTCAACTCAACGAGTTCG-GACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAGCTCGAG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
64120384 ACGAGTTTGGATGC
65 ACGAGCTCGGATGC
64120398 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:64120390 original size:46 final size:47
Alignment explanation
Indices: 64120219--64120388 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 47
64120209 TGTAACCCGC
* *
64120219 CCATAAGTGAACTCGGACTCAACTCAATGAGCTC-GAGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTTGCAT
* * *
64120265 CTATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-G-C-ATTTGCAT
* * *
64120315 CTC-T---CGAACTCGAACTCAACTCAACGAGTTCGGA-CATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTTGCAT
64120358 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
64120389 TTTGGATGCT
Statistics
Matches: 102, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
46 54 0.53
47 29 0.28
48 1 0.01
49 1 0.01
50 7 0.07
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTTGCAT
Found at i:64125079 original size:46 final size:44
Alignment explanation
Indices: 64124974--64125146 Score: 161
Period size: 46 Copynumber: 3.8 Consensus size: 44
64124964 GGGTTATTGC
* * * *
64124974 GAGCTAGTGTAAGACCATGTCTGGGATATGCCATCGG-TATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCTA-CGAGA--T
* *
64125022 GAGCTAGTGTAAGATATGTCTGGGACATGCATCGGCCT-CGAGAT
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGAT
** *
64125066 GTAAGCCAGTGTAAGACATGTCTGGTTCATCCATCGGCTACGAGAT
1 G--AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGAT
64125112 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
64125147 AGCATTCTAC
Statistics
Matches: 106, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
44 14 0.13
45 14 0.13
46 50 0.47
47 13 0.12
48 15 0.14
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGAT
Found at i:64125320 original size:2 final size:2
Alignment explanation
Indices: 64125275--64125301 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
64125265 TACCTATTCG
64125275 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
64125302 AGATGAGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:64126301 original size:21 final size:22
Alignment explanation
Indices: 64126262--64126302 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
64126252 TTGAATCGGT
64126262 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCGTGTTGCCCCTCC
64126284 CACACGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
64126303 GTGTCTAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.10, C:0.44, G:0.29, T:0.17
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTCC
Found at i:64130347 original size:26 final size:27
Alignment explanation
Indices: 64130299--64130349 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
64130289 TTAAACATTC
*
64130299 TAAAAAATAAATAAATATCATAAAAGA
1 TAAAAAATAAATAAATATAATAAAAGA
* *
64130326 TAAAAAATAATTTAAT-TAATAAAA
1 TAAAAAATAAATAAATATAATAAAA
64130350 ATATAATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 7 0.33
27 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (27 bp):
TAAAAAATAAATAAATATAATAAAAGA
Done.