Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 210 of 410
Found at i:64130362 original size:20 final size:19
Alignment explanation
Indices: 64130325--64130363 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
64130315 ATCATAAAAG
**
64130325 ATAAAAAATAATTTAATTA
1 ATAAAAAATAATAAAATTA
64130344 ATAAAAATATAATAAAATTA
1 ATAAAAA-ATAATAAAATTA
64130364 TAGAAGGCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAAAAAATAATAAAATTA
Found at i:64130725 original size:18 final size:18
Alignment explanation
Indices: 64130702--64130744 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
64130692 TTTTATAAAT
*
64130702 TATTTTTGAATCTTTATTC
1 TATTTTTGAAT-TTTAATC
*
64130721 T-TTTTAGAATTTTAATC
1 TATTTTTGAATTTTAATC
64130738 TATTTTT
1 TATTTTT
64130745 ATAGTTAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
17 7 0.35
18 12 0.60
19 1 0.05
ACGTcount: A:0.23, C:0.07, G:0.05, T:0.65
Consensus pattern (18 bp):
TATTTTTGAATTTTAATC
Found at i:64144134 original size:39 final size:39
Alignment explanation
Indices: 64144090--64144266 Score: 266
Period size: 39 Copynumber: 4.5 Consensus size: 39
64144080 GTGTGAGATA
* *
64144090 TATATCCAGGCTAATTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
64144129 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
64144168 TATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
64144207 TATATCCGGGCTAAGTCCTGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
64144245 TACATCCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
64144267 CATGCTTTGT
Statistics
Matches: 127, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
38 21 0.17
39 99 0.78
40 7 0.06
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:64155059 original size:29 final size:28
Alignment explanation
Indices: 64154994--64155060 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 28
64154984 GGGTTTTTTA
64154994 TTTGATTTAAATGGTTTTAAGTTTATATT
1 TTTGATTTAAATGGTTTTAAGTTTATA-T
* * *
64155023 TTTTATTTAAATTGTTTTGAGTTTGA-AT
1 TTTGATTTAAATGGTTTTAAGTTT-ATAT
64155051 TTTGAATTTA
1 TTTG-ATTTA
64155061 GGATCGAGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 4 0.12
29 27 0.84
30 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (28 bp):
TTTGATTTAAATGGTTTTAAGTTTATAT
Found at i:64157037 original size:13 final size:13
Alignment explanation
Indices: 64157019--64157043 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64157009 TAGATAGTTA
64157019 AGTATTTATTGTT
1 AGTATTTATTGTT
64157032 AGTATTTATTGT
1 AGTATTTATTGT
64157044 GTGATTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (13 bp):
AGTATTTATTGTT
Found at i:64157461 original size:62 final size:62
Alignment explanation
Indices: 64157391--64157511 Score: 242
Period size: 62 Copynumber: 2.0 Consensus size: 62
64157381 TTTTCAATAG
64157391 GAAAAATTAATTCTCTCTACGTGAAACAAAAAACTTGAGCTCTTAAGAAAATAAAATTTTTT
1 GAAAAATTAATTCTCTCTACGTGAAACAAAAAACTTGAGCTCTTAAGAAAATAAAATTTTTT
64157453 GAAAAATTAATTCTCTCTACGTGAAACAAAAAACTTGAGCTCTTAAGAAAATAAAATTT
1 GAAAAATTAATTCTCTCTACGTGAAACAAAAAACTTGAGCTCTTAAGAAAATAAAATTT
64157512 ACCCTCTAAA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.31
Consensus pattern (62 bp):
GAAAAATTAATTCTCTCTACGTGAAACAAAAAACTTGAGCTCTTAAGAAAATAAAATTTTTT
Found at i:64162803 original size:68 final size:70
Alignment explanation
Indices: 64162731--64162928 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
64162721 ACACCCTGTA
* * * *
64162731 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
64162793 ATAAAT
65 ATAAAT
*
64162799 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
64162864 ATAAAT
65 ATAAAT
*
64162870 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
64162929 ATGTAACACC
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:64162842 original size:41 final size:41
Alignment explanation
Indices: 64162797--64162914 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
64162787 TGAAAGATAA
64162797 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
64162838 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64162868 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64162909 ATGTAG
1 ATGTAG
64162915 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:64162854 original size:71 final size:71
Alignment explanation
Indices: 64162765--64162928 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64162755 GAGATGTATC
64162765 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64162830 AGGACA
66 AGGACA
64162836 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64162901 AGGACA
66 AGGACA
64162907 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
64162929 ATGTAACACC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:64164330 original size:24 final size:24
Alignment explanation
Indices: 64164303--64164509 Score: 342
Period size: 24 Copynumber: 8.6 Consensus size: 24
64164293 CTTATTATGT
* * *
64164303 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
64164327 TCGCACACATAGTGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
64164351 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
64164375 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
64164399 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
64164423 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
64164447 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
64164471 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
64164495 TCGCACACATAGTGC
1 TCGCACACATAGTGC
64164510 ATTTGAGATA
Statistics
Matches: 178, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 178 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:64164966 original size:2 final size:2
Alignment explanation
Indices: 64164959--64164994 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
64164949 TGGGCATACT
64164959 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
64164995 CATACCCGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:64173323 original size:68 final size:70
Alignment explanation
Indices: 64173251--64173448 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
64173241 ACACCCTGTA
* * * *
64173251 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
64173313 ATAAAT
65 ATAAAT
*
64173319 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
64173384 ATAAAT
65 ATAAAT
*
64173390 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
64173449 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:64173362 original size:41 final size:41
Alignment explanation
Indices: 64173317--64173434 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
64173307 TGAAAGATAA
64173317 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
64173358 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64173388 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64173429 ATGTAG
1 ATGTAG
64173435 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:64173374 original size:71 final size:71
Alignment explanation
Indices: 64173285--64173448 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64173275 GAGATGTATC
64173285 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64173350 AGGACA
66 AGGACA
64173356 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64173421 AGGACA
66 AGGACA
64173427 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
64173449 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:64175893 original size:24 final size:24
Alignment explanation
Indices: 64175861--64175909 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
64175851 TTACCTTTGG
64175861 TATTAGATACAATTATATGTGTTA
1 TATTAGATACAATTATATGTGTTA
64175885 TATTAGATACAATTATATGTGTTA
1 TATTAGATACAATTATATGTGTTA
64175909 T
1 T
64175910 CTAGACCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.12, T:0.47
Consensus pattern (24 bp):
TATTAGATACAATTATATGTGTTA
Found at i:64180005 original size:31 final size:30
Alignment explanation
Indices: 64179970--64180129 Score: 206
Period size: 29 Copynumber: 5.5 Consensus size: 30
64179960 GACAAGATTG
* * * * *
64179970 GCACTAAGTGTGCGGGTTTTAAAATTGTACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
*
64180001 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
64180029 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
64180058 GCACTAAGTGTGCGAGCTGAAAATT-TATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
64180087 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
64180116 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
64180130 GATTCACTAT
Statistics
Matches: 119, Mismatches: 5, Indels: 12
0.88 0.04 0.09
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 74 0.62
30 2 0.02
31 18 0.15
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:64180141 original size:29 final size:29
Alignment explanation
Indices: 64180000--64180129 Score: 210
Period size: 29 Copynumber: 4.5 Consensus size: 29
64179990 AAAATTGTAC
* *
64180000 AGCACTAAGTGTGCGAGTTTG--ATTATAT
1 AGCACTAAGTGTGCGAG-CTGAAAATATAT
64180028 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
*
64180057 AGCACTAAGTGTGCGAGCTGAAAATTTAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
64180086 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
64180115 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
64180130 GATTCACTAT
Statistics
Matches: 96, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
27 2 0.02
28 17 0.18
29 77 0.80
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:64181786 original size:40 final size:42
Alignment explanation
Indices: 64181757--64181837 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 42
64181747 GCGAGTTGGA
64181757 ATAGCTTCGGCTTT-A-TG-TGGCACTAAGTGTGCGATACTGAG
1 ATAGCTTCGG-TTTAAGTGATGGCACTAAGTGTGCGATA-TGAG
64181798 ATAGCTTCGGTTTAATGTGATGGCACTAAGTGTGCGATAT
1 ATAGCTTCGGTTTAA-GTGATGGCACTAAGTGTGCGATAT
64181838 TGTTATAGCT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
40 3 0.08
41 11 0.31
43 3 0.08
44 19 0.53
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.33
Consensus pattern (42 bp):
ATAGCTTCGGTTTAAGTGATGGCACTAAGTGTGCGATATGAG
Found at i:64191985 original size:27 final size:27
Alignment explanation
Indices: 64191924--64191986 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
64191914 TTGATCTGAA
*
64191924 GCTACTTTTAAACTATCTCGAATCGTT
1 GCTACTTTTAAACTATCTCAAATCGTT
*
64191951 GCTGCTTTTAAACTATCTCAAATCGTT
1 GCTACTTTTAAACTATCTCAAATCGTT
**
64191978 TTTACTTTT
1 GCTACTTTT
64191987 TCTTCAGTCT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.24, C:0.21, G:0.10, T:0.46
Consensus pattern (27 bp):
GCTACTTTTAAACTATCTCAAATCGTT
Found at i:64199893 original size:43 final size:43
Alignment explanation
Indices: 64199832--64199916 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
64199822 TTAGTACCGC
*
64199832 ATTTCACCCGCAAACGGATGGTCAATTAGAGGGAGTTATTCAG
1 ATTTCACCCGCAAACGGATGGTCAATTAGAGCGAGTTATTCAG
*
64199875 ATTTCACCTGCAAACGGATGGTCAATTAGAGCGAGTTATTCA
1 ATTTCACCCGCAAACGGATGGTCAATTAGAGCGAGTTATTCA
64199917 AATACTTGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (43 bp):
ATTTCACCCGCAAACGGATGGTCAATTAGAGCGAGTTATTCAG
Found at i:64225263 original size:40 final size:40
Alignment explanation
Indices: 64225162--64225381 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
64225152 TATTCGAATG
* * *
64225162 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
64225203 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
64225243 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
64225283 ATATCCGGGCTAAG-TCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
64225322 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
64225361 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
64225382 ATACTTGGGT
Statistics
Matches: 151, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 50 0.33
40 59 0.39
41 28 0.19
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:64225315 original size:39 final size:39
Alignment explanation
Indices: 64225162--64225381 Score: 228
Period size: 39 Copynumber: 5.5 Consensus size: 39
64225152 TATTCGAATG
*
64225162 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCT-AGTGACT
* * *
64225203 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACT
* ** *
64225243 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGG-CTAAGTCCGAAGGCATTTGTGCTAGTGACT
* *
64225283 ATATCCGGGCTAAGTCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACT
* * * **
64225322 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACT
*
64225361 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGT-CCGAAG
64225382 ATACTTGGGT
Statistics
Matches: 149, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
38 12 0.08
39 53 0.36
40 52 0.35
41 31 0.21
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACT
Found at i:64225340 original size:79 final size:81
Alignment explanation
Indices: 64225162--64225345 Score: 264
Period size: 79 Copynumber: 2.3 Consensus size: 81
64225152 TATTCGAATG
* * *
64225162 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCGAAGGC
* * *
64225227 ATTTGTGCGAGTTACT
66 ATTTATGCGAGTGACC
* * *
64225243 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAG-TCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCGAAGGC
*
64225306 ATTTATGCTAGTGACC
66 ATTTATGCGAGTGACC
64225322 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
64225346 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
79 43 0.47
80 19 0.21
81 29 0.32
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCGAAGGC
ATTTATGCGAGTGACC
Found at i:64231757 original size:29 final size:29
Alignment explanation
Indices: 64231724--64231796 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
64231714 GTGACGAGAT
64231724 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* *
64231753 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
64231782 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
64231797 GAGCTCGAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:64231812 original size:29 final size:29
Alignment explanation
Indices: 64231780--64231856 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 29
64231770 GCTGGAAATA
* *
64231780 TATGGCACTAAGTGTGCGAGCTCGAAGGG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
** * * *
64231809 TATGGCACTGTGTGTGCGGGCTTAAATCG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
*
64231838 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
64231857 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.18, G:0.35, T:0.25
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAGCTCAAAGCG
Found at i:64231813 original size:58 final size:59
Alignment explanation
Indices: 64231724--64231856 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 59
64231714 GTGACGAGAT
* * *
64231724 TGGCACTAAGTGTGC-ATGCTGGAAAAATATGGCACTGAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCT-GAAATCACA
*** * * * *
64231782 TGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCTGAAATCACA
64231840 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
64231857 AATCGAGTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 4 0.06
58 58 0.92
59 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.33, T:0.25
Consensus pattern (59 bp):
TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCTGAAATCACA
Found at i:64233701 original size:40 final size:40
Alignment explanation
Indices: 64233617--64233801 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
64233607 TCGAATGATG
* *
64233617 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
64233656 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
64233697 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
64233736 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
64233775 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
64233802 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:64233753 original size:79 final size:81
Alignment explanation
Indices: 64233617--64233799 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
64233607 TCGAATGATG
* * *
64233617 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
64233681 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
64233696 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACCAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
64233758 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
64233776 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
64233800 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:64233823 original size:79 final size:79
Alignment explanation
Indices: 64233618--64233824 Score: 228
Period size: 79 Copynumber: 2.6 Consensus size: 79
64233608 CGAATGATGT
* *
64233618 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAGATCCGAAGGCATT
*
64233681 TGTGCGAGTTACTAATT
63 TGTGCGAGTTACTAATA
* * *
64233698 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CCAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGAT-CCGAAGGCATT
64233760 TGTGCGAGTTACT-ATAA
63 TGTGCGAGTTACTAAT-A
* **
64233777 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAA
64233825 ATTCTAAAGG
Statistics
Matches: 107, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
78 3 0.03
79 62 0.58
80 42 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:64241654 original size:40 final size:40
Alignment explanation
Indices: 64241595--64241699 Score: 149
Period size: 40 Copynumber: 2.6 Consensus size: 40
64241585 CATTTGAATG
* * *
64241595 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG-TT
* *
64241635 ATGTCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTT
64241675 ATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
64241700 ATGTGCAAGT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
40 56 0.97
41 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTT
Found at i:64241731 original size:39 final size:39
Alignment explanation
Indices: 64241638--64241745 Score: 135
Period size: 39 Copynumber: 2.7 Consensus size: 39
64241628 AGTGATTATG
* * *** *
64241638 TCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATA
1 TCCGGGCTAAGACCCGAAGGCAAT-GTGCAAGTTACCAAA
64241678 TCCGGGCTAAGACCCGAAGGCAATGTGCAAGTTACCAAA
1 TCCGGGCTAAGACCCGAAGGCAATGTGCAAGTTACCAAA
*
64241717 TCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TCCGGGCTAAGACCCGAAGGCAA-TGTGC
64241746 TTGTGGTTGT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 32 0.53
40 28 0.47
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (39 bp):
TCCGGGCTAAGACCCGAAGGCAATGTGCAAGTTACCAAA
Found at i:64248951 original size:40 final size:40
Alignment explanation
Indices: 64248885--64249035 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
64248875 AAATTGAATG
* * *
64248885 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
64248924 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
64248964 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
64249004 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
64249036 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:64249049 original size:40 final size:40
Alignment explanation
Indices: 64248922--64249051 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
64248912 ATGCTGGAAA
* * *
64248922 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
64248962 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
64249002 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
64249042 TTATATCCGG
1 TTATATCCGG
64249052 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:64256641 original size:40 final size:40
Alignment explanation
Indices: 64256514--64256643 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
64256504 ATGCTGGAAA
* * *
64256514 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
64256554 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
64256594 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
64256634 TTATATCCGG
1 TTATATCCGG
64256644 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:64258119 original size:12 final size:12
Alignment explanation
Indices: 64258104--64258130 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
64258094 GTATCATGAC
64258104 ATGTATATATAT
1 ATGTATATATAT
64258116 ATGTATATATAT
1 ATGTATATATAT
64258128 ATG
1 ATG
64258131 ACTAGTCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (12 bp):
ATGTATATATAT
Found at i:64264107 original size:27 final size:26
Alignment explanation
Indices: 64264072--64264182 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
64264062 AGCATGGCTG
* *
64264072 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
64264098 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
64264126 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
64264153 CCAGATCAGATAATTGTGGCATA-CCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
64264179 CCAG
1 CCAG
64264183 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 13 0.17
27 46 0.61
28 16 0.21
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:64264136 original size:54 final size:53
Alignment explanation
Indices: 64264072--64264182 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 53
64264062 AGCATGGCTG
*
64264072 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCA-AACCA
* * *
64264126 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATACCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAAACCA
64264179 CCAG
1 CCAG
64264183 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
53 8 0.15
54 26 0.50
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (53 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAAACCA
Found at i:64270168 original size:27 final size:26
Alignment explanation
Indices: 64270131--64270242 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
64270121 AGCATGGCTG
* *
64270131 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
64270157 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
64270185 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
64270212 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
64270239 CCAG
1 CCAG
64270243 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.71
28 16 0.21
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:64270222 original size:54 final size:54
Alignment explanation
Indices: 64270131--64270242 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
64270121 AGCATGGCTG
*
64270131 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAACCA
* * * *
64270185 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAACCA
64270239 CCAG
1 CCAG
64270243 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAACCA
Found at i:64271682 original size:24 final size:23
Alignment explanation
Indices: 64271655--64271731 Score: 84
Period size: 23 Copynumber: 3.3 Consensus size: 23
64271645 CTAGATTTCC
**
64271655 TCCCTTATCTGCGCCTAAATCCTA
1 TCCCTTATCAACGCCTAAATCC-A
*
64271679 TCCCTTATCAACTCCTAAATCCA
1 TCCCTTATCAACGCCTAAATCCA
* *
64271702 TCCCTTATCAACTCCTTAATCC-
1 TCCCTTATCAACGCCTAAATCCA
64271724 TCTCCTTA
1 TC-CCTTA
64271732 CAGACTTTCA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
22 2 0.04
23 27 0.56
24 19 0.40
ACGTcount: A:0.23, C:0.39, G:0.03, T:0.35
Consensus pattern (23 bp):
TCCCTTATCAACGCCTAAATCCA
Found at i:64271708 original size:23 final size:23
Alignment explanation
Indices: 64271668--64271731 Score: 94
Period size: 23 Copynumber: 2.7 Consensus size: 23
64271658 CTTATCTGCG
64271668 CCTAAATCCTATCCCTTATCAACT
1 CCTAAATCC-ATCCCTTATCAACT
64271692 CCTAAATCCATCCCTTATCAACT
1 CCTAAATCCATCCCTTATCAACT
*
64271715 CCTTAATCC-TCTCCTTA
1 CCTAAATCCATC-CCTTA
64271732 CAGACTTTCA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
22 2 0.05
23 27 0.71
24 9 0.24
ACGTcount: A:0.27, C:0.39, G:0.00, T:0.34
Consensus pattern (23 bp):
CCTAAATCCATCCCTTATCAACT
Found at i:64277276 original size:30 final size:30
Alignment explanation
Indices: 64277240--64277301 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
64277230 AATCGAAAGT
*
64277240 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCAATTTAAACTAGC
64277270 TTTGGCACTAAGTGTGCAATTTAAACTAGC
1 TTTGGCACTAAGTGTGCAATTTAAACTAGC
64277300 TT
1 TT
64277302 CGGCTACTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.35
Consensus pattern (30 bp):
TTTGGCACTAAGTGTGCAATTTAAACTAGC
Found at i:64281601 original size:42 final size:42
Alignment explanation
Indices: 64281542--64281703 Score: 173
Period size: 42 Copynumber: 3.8 Consensus size: 42
64281532 GGGATTACAA
* * *
64281542 AGACTATGTACAAGACCATATCTGGGATATGGCATCTATATG
1 AGACTACGTATAAGACCATATCTGGGATATGGCATCGATATG
*
64281584 AGACTACGTATAAGACCATATCTGGGATATGGCATCGAGATG
1 AGACTACGTATAAGACCATATCTGGGATATGGCATCGATATG
* * * * * * *
64281626 AAACTTCGTGTAAGACCATAGCTGGGCTATTGGCATGGATACG
1 AGACTACGTATAAGACCATATCTGGGATA-TGGCATCGATATG
* * *
64281669 AGA-TCCCTTGTAAGACCATATCTGGGATATGGCAT
1 AGACT-ACGTATAAGACCATATCTGGGATATGGCAT
64281704 TGGTATGGTA
Statistics
Matches: 101, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
42 69 0.68
43 32 0.32
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.27
Consensus pattern (42 bp):
AGACTACGTATAAGACCATATCTGGGATATGGCATCGATATG
Found at i:64283875 original size:48 final size:47
Alignment explanation
Indices: 64283811--64284183 Score: 271
Period size: 48 Copynumber: 7.8 Consensus size: 47
64283801 TGATATGTGC
* *
64283811 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACATTATGAGA
* * *
64283859 GCTAGGGTAAGACCATGTTTGGGACATGGCGTCGGCCACGA-TATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CAC-ATTATGAGA
* * * * * *
64283907 GCCAGTTTAAGACAATGTATAGGACATGGCATCGGCA-ATGATATGTA-C
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAT--TATG-AGA
* * *
64283955 GCTAGTGTAAGACCATGTCTGGGACATGGCGTTGGCCACATTACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACATTATGAGA
* *** * * *
64284003 GCCAAAATAAGACCATGTCTGGGACATCGTATCGG--CATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT---ATGAGA
* *
64284051 GCTAGTGTAGGACCATGTCTGGGACATGGCATCGG--CATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT---ATGAGA
*
64284099 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC-C-TTGACAT-ATGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT---ATGA-GA
* * * *
64284147 GCCAGTGTAAGACCATGTTTGGAACATGGGATCGGCA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
64284184 ATTCACCCTC
Statistics
Matches: 265, Mismatches: 46, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
45 5 0.02
47 4 0.02
48 249 0.94
49 5 0.02
50 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACATTATGAGA
Found at i:64283952 original size:96 final size:96
Alignment explanation
Indices: 64283818--64284175 Score: 357
Period size: 96 Copynumber: 3.7 Consensus size: 96
64283808 TGCGCTAGTG
* * *
64283818 TAAGACCATGTCTGGGACATGGCATCGGCCACAT--TATGTGTGCTAGGGTAAGACCATGTTTGG
1 TAAGACCATGTCTGGGACATGGCATCGG-CA-ATGATATGTGAGCTAGTGTAAGACCATGTCTGG
* *
64283881 GACATGGCGTCGGCCACGATATGAGAGCCAGTT
64 GACATGGCGTCGGCCACGATACGAGAGCCAGTA
* * *
64283914 TAAGACAATGTATAGGACATGGCATCGGCAATGATATGT-ACGCTAGTGTAAGACCATGTCTGGG
1 TAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGA-GCTAGTGTAAGACCATGTCTGGG
* **
64283978 ACATGGCGTTGGCCAC-ATTACGAGAGCCAAAA
65 ACATGGCGTCGGCCACGA-TACGAGAGCCAGTA
* * * * * * *
64284010 TAAGACCATGTCTGGGACATCGTATCGGCATTGAGACGAGAGCTAGTGTAGGACCATGTCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGAGCTAGTGTAAGACCATGTCTGGGA
* * * * *
64284075 CATGGCATCGG-CATTGAGACGAGAGCTAGTG
66 CATGGCGTCGGCCA-CGATACGAGAGCCAGTA
* ** * * * * *
64284106 TAAGACCATGTCTGGGACATGGCATCAGCCTTGACATATGAGCCAGTGTAAGACCATGTTTGGAA
1 TAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGAGCTAGTGTAAGACCATGTCTGGGA
64284171 CATGG
66 CATGG
64284176 GATCGGCAAT
Statistics
Matches: 214, Mismatches: 41, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
94 2 0.01
95 5 0.02
96 205 0.96
97 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (96 bp):
TAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGAGCTAGTGTAAGACCATGTCTGGGA
CATGGCGTCGGCCACGATACGAGAGCCAGTA
Found at i:64284076 original size:144 final size:144
Alignment explanation
Indices: 64283801--64284131 Score: 387
Period size: 144 Copynumber: 2.3 Consensus size: 144
64283791 TGACTTTGGG
* * * * * ***
64283801 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGTGTGCTAGGG
1 TGATATGTACGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTACGAGAGCCAAAA
* * * * * *
64283866 TAAGACCATGTTTGGGACATGGCGTCGGCCACGATATGAGAGCCAGTTTAAGACAATGTATAGGA
66 TAAGACCATGTCTGGGACATCGCATCGGCCACGAGACGAGAGCCAGTGTAAGACAATGTATAGGA
64283931 CATGGCATCGGCAA
131 CATGGCATCGGCAA
* *
64283945 TGATATGTACGCTAGTGTAAGACCATGTCTGGGACATGGCGTTGGCCACATTACGAGAGCCAAAA
1 TGATATGTACGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTACGAGAGCCAAAA
* * * * * * *
64284010 TAAGACCATGTCTGGGACATCGTATCGG-CATTGAGACGAGAGCTAGTGTAGGACCATGTCTGGG
66 TAAGACCATGTCTGGGACATCGCATCGGCCA-CGAGACGAGAGCCAGTGTAAGACAATGTATAGG
*
64284074 ACATGGCATCGGCAT
130 ACATGGCATCGGCAA
* * *
64284089 TGAGACG-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 TGATATGTA-CGCTAGTGTAAGACCATGTCTGGGACATGGCATC
64284132 AGCCTTGACA
Statistics
Matches: 156, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
143 3 0.02
144 153 0.98
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (144 bp):
TGATATGTACGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTACGAGAGCCAAAA
TAAGACCATGTCTGGGACATCGCATCGGCCACGAGACGAGAGCCAGTGTAAGACAATGTATAGGA
CATGGCATCGGCAA
Found at i:64287826 original size:33 final size:33
Alignment explanation
Indices: 64287785--64287854 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
64287775 ACGGTGTTTT
*
64287785 CTAA-GATAGACTTGAGATCTGGTTATTACAAG
1 CTAAGGATAGACTTGAGATCCGGTTATTACAAG
*
64287817 CTAAGGATAGACTTGAGATCCGGTTATTACCAG
1 CTAAGGATAGACTTGAGATCCGGTTATTACAAG
64287850 CTAAG
1 CTAAG
64287855 AGTTAAGGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 4 0.11
33 31 0.89
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.29
Consensus pattern (33 bp):
CTAAGGATAGACTTGAGATCCGGTTATTACAAG
Found at i:64297280 original size:3 final size:3
Alignment explanation
Indices: 64297274--64297339 Score: 80
Period size: 3 Copynumber: 21.0 Consensus size: 3
64297264 AATAGGGGCG
*
64297274 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA CA-A ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
64297319 ATA CATA TATA TATA ATA ATA
1 ATA -ATA -ATA -ATA ATA ATA
64297340 GTAGTCAGAA
Statistics
Matches: 58, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
2 1 0.02
3 46 0.79
4 11 0.19
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:64297427 original size:3 final size:3
Alignment explanation
Indices: 64297414--64297493 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
64297404 GAGGGCATAT
64297414 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
64297458 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA A
64297494 AAAAAATAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
2 9 0.15
3 42 0.68
4 9 0.15
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:64297438 original size:12 final size:12
Alignment explanation
Indices: 64297414--64297494 Score: 78
Period size: 12 Copynumber: 6.8 Consensus size: 12
64297404 GAGGGCATAT
64297414 ATAATAT-AATA
1 ATAATATAAATA
64297425 ATAATATAAATA
1 ATAATATAAATA
*
64297437 ATAATATATACATG
1 ATAATATA-A-ATA
*
64297451 AGAA-AT-AATA
1 ATAATATAAATA
64297461 ATAATATAAATA
1 ATAATATAAATA
* *
64297473 ATAGTAAAAATA
1 ATAATATAAATA
*
64297485 ATAAAATAAA
1 ATAATATAAA
64297495 AAAAATAAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
10 5 0.09
11 10 0.18
12 33 0.59
13 3 0.05
14 5 0.09
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:64297440 original size:18 final size:18
Alignment explanation
Indices: 64297410--64297489 Score: 67
Period size: 18 Copynumber: 4.4 Consensus size: 18
64297400 TGAAGAGGGC
64297410 ATATATAAT-ATAATAATA
1 ATATA-AATAATAATAATA
64297428 ATATAAATAATAATATATA
1 ATATAAATAATAATA-ATA
* *
64297447 CAT-GAGA-AATAATAATA
1 -ATATAAATAATAATAATA
* *
64297464 ATATAAATAATAGTAAAA
1 ATATAAATAATAATAATA
64297482 ATAATAAA
1 AT-ATAAA
64297490 ATAAAAAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
16 2 0.04
17 8 0.16
18 28 0.56
19 10 0.20
20 2 0.04
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (18 bp):
ATATAAATAATAATAATA
Found at i:64297490 original size:9 final size:9
Alignment explanation
Indices: 64297414--64297502 Score: 56
Period size: 9 Copynumber: 9.4 Consensus size: 9
64297404 GAGGGCATAT
64297414 ATAATATAATA
1 ATAATA-AA-A
*
64297425 ATAATATAA
1 ATAATAAAA
*
64297434 ATAATAATAT
1 ATAATAA-AA
*
64297444 ATACATGAGAA
1 ATA-AT-AAAA
*
64297455 ATAATAATA
1 ATAATAAAA
64297464 AT-ATAAATA
1 ATAATAAA-A
*
64297473 ATAGTAAAA
1 ATAATAAAA
64297482 ATAAT-AAA
1 ATAATAAAA
*
64297490 ATAAAAAAA
1 ATAATAAAA
64297499 ATAA
1 ATAA
64297503 AACAAAGCTC
Statistics
Matches: 61, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
8 11 0.18
9 26 0.43
10 11 0.18
11 12 0.20
12 1 0.02
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.28
Consensus pattern (9 bp):
ATAATAAAA
Found at i:64297923 original size:13 final size:13
Alignment explanation
Indices: 64297905--64297998 Score: 97
Period size: 13 Copynumber: 7.2 Consensus size: 13
64297895 AGTGGTTGGG
64297905 GTGGTTTAGTGGA
1 GTGGTTTAGTGGA
*
64297918 GTGGTTTAGTGTA
1 GTGGTTTAGTGGA
64297931 GTGGTTTAGTGGA
1 GTGGTTTAGTGGA
*
64297944 GTGGTTAGAGTGGTTGGA
1 GTGGTT----TAG-TGGA
64297962 GTGGTTTAGTGGA
1 GTGGTTTAGTGGA
64297975 GTGG--T--TGGA
1 GTGGTTTAGTGGA
64297984 GTGGTTTAGTGGA
1 GTGGTTTAGTGGA
64297997 GT
1 GT
64297999 AAAGATATTT
Statistics
Matches: 68, Mismatches: 4, Indels: 18
0.76 0.04 0.20
Matches are distributed among these distances:
9 8 0.12
11 2 0.03
13 44 0.65
14 2 0.03
17 2 0.03
18 10 0.15
ACGTcount: A:0.15, C:0.00, G:0.47, T:0.38
Consensus pattern (13 bp):
GTGGTTTAGTGGA
Found at i:64297965 original size:31 final size:31
Alignment explanation
Indices: 64297930--64297989 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
64297920 GGTTTAGTGT
64297930 AGTGGTTTAGTGGAGTGGTTAGAGTGGTTGG
1 AGTGGTTTAGTGGAGTGGTTAGAGTGGTTGG
*
64297961 AGTGGTTTAGTGGAGTGGTTGGAGTGGTT
1 AGTGGTTTAGTGGAGTGGTTAGAGTGGTT
64297990 TAGTGGAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.15, C:0.00, G:0.48, T:0.37
Consensus pattern (31 bp):
AGTGGTTTAGTGGAGTGGTTAGAGTGGTTGG
Found at i:64297976 original size:22 final size:22
Alignment explanation
Indices: 64297914--64297998 Score: 100
Period size: 22 Copynumber: 3.9 Consensus size: 22
64297904 GGTGGTTTAG
*
64297914 TGGAGTGGTTTAGTGTAGTGGT
1 TGGAGTGGTTTAGTGGAGTGGT
* ** * *
64297936 T-TAGTGGAGTGGTTAGAGTGGT
1 TGGAGTGGTTTAG-TGGAGTGGT
64297958 TGGAGTGGTTTAGTGGAGTGGT
1 TGGAGTGGTTTAGTGGAGTGGT
64297980 TGGAGTGGTTTAGTGGAGT
1 TGGAGTGGTTTAGTGGAGT
64297999 AAAGATATTT
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
21 7 0.14
22 36 0.72
23 7 0.14
ACGTcount: A:0.15, C:0.00, G:0.47, T:0.38
Consensus pattern (22 bp):
TGGAGTGGTTTAGTGGAGTGGT
Found at i:64297983 original size:9 final size:9
Alignment explanation
Indices: 64297940--64297989 Score: 55
Period size: 9 Copynumber: 5.1 Consensus size: 9
64297930 AGTGGTTTAG
64297940 TGGAGTGGT
1 TGGAGTGGT
*
64297949 TAGAGTGGT
1 TGGAGTGGT
64297958 TGGAGTGGTTT
1 TGGAGTGG--T
64297969 AGTGGAGTGGT
1 --TGGAGTGGT
64297980 TGGAGTGGT
1 TGGAGTGGT
64297989 T
1 T
64297990 TAGTGGAGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
9 25 0.71
11 2 0.06
13 8 0.23
ACGTcount: A:0.14, C:0.00, G:0.50, T:0.36
Consensus pattern (9 bp):
TGGAGTGGT
Found at i:64298504 original size:132 final size:131
Alignment explanation
Indices: 64298262--64298840 Score: 711
Period size: 132 Copynumber: 4.4 Consensus size: 131
64298252 TTGATCTGCT
* * *
64298262 TCTTCGATCTATTCCCTATAAACCCAGGGATGCCAAATCTGCTGTCTTCAACTTGTTCCCTATAA
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTCTTCAACTTGTTCCCTATAA
* ** * * * * *
64298327 ACACAGGGATGCCAAAT-CTGCTATCTTC-AACTTG-TTCCCTATAAGCACAGGGATGCCATG-C
66 GCACAGGGATGCC--ATGCTGAAATCTTCGATC-TGCTTCACTGTAAGCACAGGAATGTCA-GAC
*
64298388 TGAAA
127 TGCAA
* * * * * * *
64298393 TCTTCGATCTGCTTCACC-GTAAGCATAGGAATGTCAGATCTGCTATCTTCGA-TATGTTCCCTA
1 TCTTCGATCTG-TTC-CCTATAAGCACAGGGATGCCAAATCTGCTGTCTTCAACT-TGTTCCCTA
64298456 TAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATC
63 TAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGA-C
*
64298521 TGCGA
127 TGCAA
* * *
64298526 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATATGCTGTTTTCAACTTGTTCCCTATAG
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTCTTCAACTTGTTCCCTATAA
* *
64298591 GCACAGGGATGCCATGTTGAAATCTTCGATCTGCTTCATTGTAAGCACAGGAATGTCAGATCTGC
66 GCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGA-CTGC
*
64298656 TA
130 AA
* * * *
64298658 TCTTCGATCTATTCCCTATAAGCACGGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAG
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTCTTCAACTTGTTCCCTATAA
*
64298723 GCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTAC
66 GCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGA-CTGC
*
64298788 TA
130 AA
* **
64298790 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCAATCTTCAA
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTCTTCAA
64298841 TCTGCTCTCC
Statistics
Matches: 393, Mismatches: 45, Indels: 19
0.86 0.10 0.04
Matches are distributed among these distances:
130 2 0.01
131 25 0.06
132 348 0.89
133 18 0.05
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (131 bp):
TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTCTTCAACTTGTTCCCTATAA
GCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGACTGCA
A
Found at i:64298729 original size:220 final size:219
Alignment explanation
Indices: 64298315--64298846 Score: 626
Period size: 220 Copynumber: 2.4 Consensus size: 219
64298305 GTCTTCAACT
* *
64298315 TGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGA
1 TGTTCCCTATAAGCACAGGGATGCCAAATATGCTATCTTCAACTTGTTCCCTATAAGCACAGGGA
*
64298380 TGCCATGCTGAAATCTTCGATCTGCTTCACCGTAAGCATAGGAATGTCAGATCTGCTATCTTCGA
66 TGCCATGCTGAAATCTTCGATCTGCTTCACCGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
* * *
64298445 TATGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGG
131 TATATTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCAATCTGCTTCACTATAAGCACAGG
* **
64298510 AATGTCA-GATCTGCGATCTTCGATC
196 AATGCCATG--CTGAAATCTTCGATC
* * *
64298535 TGTTCCCTATAAGCACAGGGATGCCAAATATGCTGTTTTCAACTTGTTCCCTATAGGCACAGGGA
1 TGTTCCCTATAAGCACAGGGATGCCAAATATGCTATCTTCAACTTGTTCCCTATAAGCACAGGGA
* **
64298600 TGCCATGTTGAAATCTTCGATCTGCTTCATTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
66 TGCCATGCTGAAATCTTCGATCTGCTTCACCGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
* * *** * * *
64298665 TCTATTCCCTATAAGCACGGGGATGCCAAAT-CTGCTGTTTTCAA-CTTG-TTCCCTATAGGCAC
131 TATATTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTCAATC-TGCTTCACTATAAGCAC
*
64298727 AGGGATGCCATGCTGAAATCTTCGATC
193 AGGAATGCCATGCTGAAATCTTCGATC
* * * * * * * * *
64298754 TGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGA-TCTGTTCCCTATAAACACAGG
1 TG-TTCCCTATAAGCACAGGGATGCCAAATATGCTATCTTCAACT-TGTTCCCTATAAGCACAGG
* *
64298818 GATGCCAAAT-CTGCAATCTTCAATCTGCT
64 GATGCC--ATGCTGAAATCTTCGATCTGCT
64298847 CTCCGCCGCT
Statistics
Matches: 265, Mismatches: 39, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
219 16 0.06
220 218 0.82
221 27 0.10
222 4 0.02
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (219 bp):
TGTTCCCTATAAGCACAGGGATGCCAAATATGCTATCTTCAACTTGTTCCCTATAAGCACAGGGA
TGCCATGCTGAAATCTTCGATCTGCTTCACCGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
TATATTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCAATCTGCTTCACTATAAGCACAGG
AATGCCATGCTGAAATCTTCGATC
Found at i:64298844 original size:44 final size:44
Alignment explanation
Indices: 64298255--64298844 Score: 486
Period size: 44 Copynumber: 13.4 Consensus size: 44
64298245 TGAGTTCTTG
* * *
64298255 ATCTGCT-TCTTCGATCTATTCCCTATAAACCCAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
64298298 ATCTGCTGTCTTC-AACTTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
*
64298342 ATCTGCTATCTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
64298384 ATGCTGAAATCTTCGATCTGCTTCACC-GTAAGCATAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTC-CCTATAAGCACAGGGATGCCAA
*
64298430 ATCTGCTATCTTCGATATGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
64298472 ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
*
64298518 ATCTGCGATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * * * *
64298562 ATATGCTGTTTTC-AACTTGTTCCCTATAGGCACAGGGATGCCAT
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
* ** ** * * * *
64298606 GT-TGAAATCTTCGATCTGCTTCATTGTAAGCACAGGAATGTCAG
1 ATCTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
* *
64298650 ATCTGCTATCTTCGATCTATTCCCTATAAGCACGGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * *
64298694 ATCTGCTGTTTTC-AACTTGTTCCCTATAGGCACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
64298736 ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
* *
64298782 ATCTACTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* *
64298826 ATCTGCAATCTTCAATCTG
1 ATCTGCTATCTTCGATCTG
64298845 CTCTCCGCCG
Statistics
Matches: 432, Mismatches: 92, Indels: 45
0.76 0.16 0.08
Matches are distributed among these distances:
42 6 0.01
43 57 0.13
44 305 0.71
45 58 0.13
46 6 0.01
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
Found at i:64299239 original size:204 final size:205
Alignment explanation
Indices: 64298856--64299333 Score: 751
Period size: 204 Copynumber: 2.3 Consensus size: 205
64298846 TCTCCGCCGC
* * *
64298856 TACAGAGACGCCAAATTATCTTGGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
1 TACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
* * * *
64298921 TCTTCGATTTGCTCCTTATAAGCACAAGGATGGCAAACCATCTTGGATCTGCTTCAGTATAAACA
66 TCTTCAATTTGCTCCTTATAAGCACAAGGATGCCAAACCATCTTCGATCTACTTCAGTATAAACA
* * *
64298986 TTTGAAGGTTGGATCTGCTATGTGTCTACCCTCCATCGAAGTGGAGATGCCAGACTTCAATTTGT
131 TCTGAAGGTTGGATCTGCTATGTGTCTACCCTCCATCAAAGTAGAGATGCCAGACTTCAATTTGT
64299051 TCTCTGACAA
196 TCTCTGACAA
* * *
64299061 TACATAGATGCCAAATCATCTTAGA-TTGCTTTAACGTAAGCACGTGAAAGCCAAATCAGCTATG
1 TACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
*
64299125 TCTTCAATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTCGATCTACTTCAGTATAAACA
66 TCTTCAATTTGCTCCTTATAAGCACAAGGATGCCAAACCATCTTCGATCTACTTCAGTATAAACA
* * * *
64299190 TCTGAAGGTTGGATCTGCTATGTGTCTGCCTTCCGTCAAAGTAGAGATGCTAGACTTCAATTTGT
131 TCTGAAGGTTGGATCTGCTATGTGTCTACCCTCCATCAAAGTAGAGATGCCAGACTTCAATTTGT
*
64299255 TCTCTGATAA
196 TCTCTGACAA
* * *
64299265 TACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACATGTGAAAGCTAAATCAACTATG
1 TACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
64299330 TCTT
66 TCTT
64299334 TGATCTGCTC
Statistics
Matches: 247, Mismatches: 25, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
204 188 0.76
205 59 0.24
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (205 bp):
TACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
TCTTCAATTTGCTCCTTATAAGCACAAGGATGCCAAACCATCTTCGATCTACTTCAGTATAAACA
TCTGAAGGTTGGATCTGCTATGTGTCTACCCTCCATCAAAGTAGAGATGCCAGACTTCAATTTGT
TCTCTGACAA
Found at i:64302323 original size:28 final size:27
Alignment explanation
Indices: 64302260--64302329 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
64302250 ATAGTGAGTC
64302260 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
64302287 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
64302315 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64302330 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:64306137 original size:40 final size:40
Alignment explanation
Indices: 64306092--64306259 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
64306082 CGGAATATAA
64306092 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
64306132 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
64306172 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
64306212 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
64306252 CCGGATAT
1 CCGGATAT
64306260 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:64313545 original size:28 final size:27
Alignment explanation
Indices: 64313482--64313551 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
64313472 ATAGTGAGTC
64313482 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
64313509 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
64313537 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64313552 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:64317051 original size:47 final size:47
Alignment explanation
Indices: 64316994--64317669 Score: 333
Period size: 48 Copynumber: 14.1 Consensus size: 47
64316984 TTAGGATTTT
* * *
64316994 ATGTGATGAATGTGAATGTGCGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAATGTGCGTATATGTGATAAAGCCGAATGGCTA
* ** * *
64317041 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATATGAATGTGCGTATATGTGATAAAGCCGAATGGCTA
64317088 ATGTGAAAT-ATATATGAGATGT--GTATATGTGATAAAGCCGAATGGCTA
1 ATGTG--ATGA-ATATGA-ATGTGCGTATATGTGATAAAGCCGAATGGCTA
* * *
64317136 ATGTGAAAT-ATATGTGAGATAT--GTATATGTGGTAAAGCCGAATGGCTA
1 ATGTG--ATGA-ATATGA-ATGTGCGTATATGTGATAAAGCCGAATGGCTA
** ** ** * *
64317184 ATGT-AAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATAGCTA
1 ATGTGATGA-ATATGAATG-TGCGTATATGTGATAAAGCCGAATGGCTA
64317232 ATGTGAAAT-ATATATGAGATGT--GTATATGTGATAAAGCCGAATGGCTA
1 ATGTG--ATGA-ATATGA-ATGTGCGTATATGTGATAAAGCCGAATGGCTA
* ** ** * *
64317280 ATGTGA-AATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCCA
1 ATGTGATGA-ATATGAATG-TGCGTATATGTGATAAAGCCGAATGGCTA
64317328 ATGTGAAAT-ATATATGAGATGT--GTATATGTGATAAAGCCGAATGGCTA
1 ATGTG--ATGA-ATATGA-ATGTGCGTATATGTGATAAAGCCGAATGGCTA
* *
64317376 ATGTGAAAT-ATATATGAGATAT--GTATATGTGGTAAAGCCGAATGGCTA
1 ATGTG--ATGA-ATATGA-ATGTGCGTATATGTGATAAAGCCGAATGGCTA
** ** ** * *
64317424 ATGT-AAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCCA
1 ATGTGATGA-ATATGAATG-TGCGTATATGTGATAAAGCCGAATGGCTA
*
64317472 ATATGAAAT-ATATATGAGATGT--GTATATGTGATAAAGCCGAATGGCTA
1 ATGTG--ATGA-ATATGA-ATGTGCGTATATGTGATAAAGCCGAATGGCTA
** ** ** * *
64317520 ATGT-AAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCCA
1 ATGTGATGA-ATATGAATG-TGCGTATATGTGATAAAGCCGAATGGCTA
* ** ** *
64317568 ATGTGA-AATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGA-ATATGAATG-TGCGTATATGTGATAAAGCCGAATGGCTA
* * * *
64317616 ATGTGAAAT-ATATATGAGATAT--GTATATGTGGTAAAGCTGAAAGGCTA
1 ATGTG--ATGA-ATATGA-ATGTGCGTATATGTGATAAAGCCGAATGGCTA
64317664 ATGTGA
1 ATGTGA
64317670 ATGTTGTAAC
Statistics
Matches: 532, Mismatches: 60, Indels: 75
0.80 0.09 0.11
Matches are distributed among these distances:
45 9 0.02
46 33 0.06
47 44 0.08
48 393 0.74
49 8 0.02
50 36 0.07
51 9 0.02
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (47 bp):
ATGTGATGAATATGAATGTGCGTATATGTGATAAAGCCGAATGGCTA
Found at i:64317127 original size:48 final size:48
Alignment explanation
Indices: 64317063--64317670 Score: 955
Period size: 48 Copynumber: 12.7 Consensus size: 48
64317053 TGAACATGCA
*
64317063 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* *
64317111 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATGTGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* * *
64317159 TATATGTGGTAAAGCCGAATGGCTAATGTAAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* *
64317207 TATATGTGGTAAAGCCGAATAGCTAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* * *
64317255 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* *
64317303 TATATGTGGTAAAGCCGAATGGCCAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
*
64317351 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* * *
64317399 TATATGTGGTAAAGCCGAATGGCTAATGTAAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* * *
64317447 TATATGTGGTAAAGCCGAATGGCCAATATGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* * * *
64317495 TATATGTGATAAAGCCGAATGGCTAATGTAAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* * *
64317543 TATATGTGGTAAAGCCGAATGGCCAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
64317591 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* *
64317639 TATATGTGGTAAAGCTGAAAGGCTAATGTGAA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
64317671 TGTTGTAACA
Statistics
Matches: 511, Mismatches: 49, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 511 1.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
Found at i:64317773 original size:37 final size:37
Alignment explanation
Indices: 64317718--64317859 Score: 239
Period size: 37 Copynumber: 3.8 Consensus size: 37
64317708 AATATATTCT
*
64317718 GGGTGAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
64317755 GGGTAAGACCCAATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
64317792 GGGTAAGACCCGATGACTACGTGTGGAGAGTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* *
64317829 GGGTAAGACCCGATAACTTCGTGTGGAGATT
1 GGGTAAGACCCGATGACTACGTGTGGAGATT
64317860 TCATCTGAGC
Statistics
Matches: 98, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.24
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:64322704 original size:19 final size:20
Alignment explanation
Indices: 64322680--64322726 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
64322670 AGTGAAAGTT
64322680 TAATGCAAATGT-TGCAATG
1 TAATGCAAATGTATGCAATG
*
64322699 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGCAATG
64322719 -AATGCAAA
1 TAATGCAAA
64322727 AGAAAGGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGTATGCAATG
Found at i:64325328 original size:12 final size:12
Alignment explanation
Indices: 64325311--64325355 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
64325301 GTAATAAAAA
*
64325311 ATAAATTTATAT
1 ATAAATATATAT
64325323 ATAAATATATAT
1 ATAAATATATAT
* *
64325335 ATATATATACAT
1 ATAAATATATAT
*
64325347 AAAAATATA
1 ATAAATATA
64325356 CACTAATATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (12 bp):
ATAAATATATAT
Found at i:64325465 original size:3 final size:3
Alignment explanation
Indices: 64325457--64325659 Score: 66
Period size: 3 Copynumber: 65.3 Consensus size: 3
64325447 AATAGGGGTG
64325457 ATA ATA ATA ATA ATA ATA ATA CA-A ATA ATA ATA CATA CATA TATA TATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA -ATA -ATA -ATA
* * * * *
64325506 ATA ATA GTA GTCA AAA ATA A-A A-A ATA ATA GA-A ATA ACA ATA ATG
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* * * ***
64325550 ATA GTA ATA AT- ATAA ATA A-A TATGG AGA GGGC ATA TATA AT- ATA
1 ATA ATA ATA ATA AT-A ATA ATA -AT-A ATA -ATA ATA -ATA ATA ATA
64325594 ATA ATA ATA A-A ATA ATA ATA TATA CATGA GA-A ATA ATA ATA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA -ATA -AT-A -ATA ATA ATA ATA ATA ATA
* *
64325640 ATAA ATA ATA GTA AAA ATA A
1 AT-A ATA ATA ATA ATA ATA A
64325660 AAAAATAAAA
Statistics
Matches: 154, Mismatches: 25, Indels: 42
0.70 0.11 0.19
Matches are distributed among these distances:
2 16 0.10
3 105 0.68
4 31 0.20
5 2 0.01
ACGTcount: A:0.61, C:0.03, G:0.07, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:64325629 original size:21 final size:18
Alignment explanation
Indices: 64325591--64325667 Score: 77
Period size: 18 Copynumber: 4.2 Consensus size: 18
64325581 CATATATAAT
64325591 ATAATAATAATA-AAATA
1 ATAATAATAATAGAAATA
64325608 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
64325629 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
* * *
64325647 ATAGTAAAAATA-AAAAA
1 ATAATAATAATAGAAATA
64325664 ATAA
1 ATAA
64325668 AAAAATAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
17 13 0.25
18 19 0.37
19 4 0.08
20 4 0.08
21 11 0.22
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.27
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:64325667 original size:35 final size:38
Alignment explanation
Indices: 64325591--64325677 Score: 94
Period size: 38 Copynumber: 2.4 Consensus size: 38
64325581 CATATATAAT
* *
64325591 ATAATAATAATAAAATAATAATATATACATGAGAAATA
1 ATAATAATAATAAAATAATAATATATAAATGAGAAAAA
*
64325629 ATAATAATAATATAAATAATAGTA-A-AAAT-A-AAAAA
1 ATAATAATAATA-AAATAATAATATATAAATGAGAAAAA
*
64325664 ATAA-AAAAATAAAA
1 ATAATAATAATAAAA
64325678 CAAAGCTCTC
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
33 3 0.07
34 6 0.14
35 8 0.18
36 1 0.02
37 3 0.07
38 13 0.30
39 10 0.23
ACGTcount: A:0.70, C:0.01, G:0.03, T:0.25
Consensus pattern (38 bp):
ATAATAATAATAAAATAATAATATATAAATGAGAAAAA
Found at i:64325669 original size:7 final size:8
Alignment explanation
Indices: 64325652--64325677 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
64325642 AAATAATAGT
64325652 AAAAATAA
1 AAAAATAA
64325660 AAAAATAA
1 AAAAATAA
64325668 AAAAATAA
1 AAAAATAA
64325676 AA
1 AA
64325678 CAAAGCTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAATAA
Found at i:64326091 original size:13 final size:13
Alignment explanation
Indices: 64326073--64326148 Score: 98
Period size: 13 Copynumber: 5.5 Consensus size: 13
64326063 AGTGGTTGGG
64326073 GTGGTTTAGTGGA
1 GTGGTTTAGTGGA
*
64326086 GTGGTTTAGTGTA
1 GTGGTTTAGTGGA
64326099 GTGGTTTAGTGGA
1 GTGGTTTAGTGGA
64326112 GTGGTTAGAGTAGTTGGA
1 GTGGTT----TAG-TGGA
64326130 GTGGTTTAGTGGA
1 GTGGTTTAGTGGA
64326143 GTGGTT
1 GTGGTT
64326149 GAAGTGGTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
13 40 0.71
14 3 0.05
17 3 0.05
18 10 0.18
ACGTcount: A:0.16, C:0.00, G:0.45, T:0.39
Consensus pattern (13 bp):
GTGGTTTAGTGGA
Found at i:64326133 original size:31 final size:30
Alignment explanation
Indices: 64326062--64326150 Score: 114
Period size: 31 Copynumber: 3.1 Consensus size: 30
64326052 TAGGCAAATG
* *
64326062 GAGTGGTTGGGGTGGTTTAGTGGAGTGGTT
1 GAGTAGTTGGAGTGGTTTAGTGGAGTGGTT
*
64326092 ---TAG-TGTAGTGGTTTAGTGGAGTGGTT
1 GAGTAGTTGGAGTGGTTTAGTGGAGTGGTT
64326118 AGAGTAGTTGGAGTGGTTTAGTGGAGTGGTT
1 -GAGTAGTTGGAGTGGTTTAGTGGAGTGGTT
64326149 GA
1 GA
64326151 AGTGGTTTAG
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
26 21 0.42
27 2 0.04
30 5 0.10
31 22 0.44
ACGTcount: A:0.16, C:0.00, G:0.47, T:0.37
Consensus pattern (30 bp):
GAGTAGTTGGAGTGGTTTAGTGGAGTGGTT
Found at i:64327209 original size:33 final size:33
Alignment explanation
Indices: 64327162--64327230 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
64327152 ATTCGGCTGC
*
64327162 GGGGCTAATTCAACCTCTTTATTAGCTTGCTCT
1 GGGGATAATTCAACCTCTTTATTAGCTTGCTCT
*
64327195 GGGGATAATTCAACCTCTTTATTAGCTTGGTCT
1 GGGGATAATTCAACCTCTTTATTAGCTTGCTCT
64327228 GGG
1 GGG
64327231 CAGTCTCTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.38
Consensus pattern (33 bp):
GGGGATAATTCAACCTCTTTATTAGCTTGCTCT
Found at i:64332557 original size:43 final size:43
Alignment explanation
Indices: 64332496--64332581 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
64332486 TGAGTAAGTT
*
64332496 CTAGCTATGAAAATGATTTTGGGATGATATTGTAATTGTTGAC
1 CTAGCTATGAAAATGATTTTGGGATGATATTGTAATCGTTGAC
64332539 CTAGCTATGAAAATGATTTTGGGATGATATTGTAATCGTTGAC
1 CTAGCTATGAAAATGATTTTGGGATGATATTGTAATCGTTGAC
64332582 TTATATTTGT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.38
Consensus pattern (43 bp):
CTAGCTATGAAAATGATTTTGGGATGATATTGTAATCGTTGAC
Found at i:64346758 original size:40 final size:40
Alignment explanation
Indices: 64346703--64346911 Score: 296
Period size: 40 Copynumber: 5.2 Consensus size: 40
64346693 AACATTGGAA
64346703 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
64346743 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
64346783 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
64346823 ATATATCCGGGCTAAGACCCGAAGGCCTTTG-GCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
64346861 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
64346902 CTATATCCGG
1 ATATATCCGG
64346912 TTAAATCCCG
Statistics
Matches: 149, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 2 0.01
39 27 0.18
40 120 0.81
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:64350157 original size:40 final size:39
Alignment explanation
Indices: 64350105--64350211 Score: 133
Period size: 40 Copynumber: 2.7 Consensus size: 39
64350095 TATCACGATT
** *
64350105 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* *
64350145 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* *
64350185 GCACATTGCCTTCGGGTCTTAACCCGG
1 GCACAATGCCTTCGGGTCTTAGCCCGG
64350212 TTATAATTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 21 0.36
40 38 0.64
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:64350172 original size:79 final size:79
Alignment explanation
Indices: 64350065--64350211 Score: 181
Period size: 79 Copynumber: 1.9 Consensus size: 79
64350055 TATGGTAACC
* * *
64350065 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCAC-AATGCCTTCGGGTCTTAA
64350128 CCCGGATAGAATGACT
64 CCCGGATAGAATGACT
* * * * * *
64350144 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACATTGCCTTCGGGTCTTAACC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAATGCCTTCGGGTCTTAACC
64350209 CGG
66 CGG
64350212 TTATAATTTC
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
78 1 0.02
79 51 0.89
80 5 0.09
ACGTcount: A:0.23, C:0.31, G:0.24, T:0.22
Consensus pattern (79 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAATGCCTTCGGGTCTTAACC
CGGATAGAATGACT
Found at i:64350211 original size:39 final size:40
Alignment explanation
Indices: 64350074--64350217 Score: 139
Period size: 39 Copynumber: 3.6 Consensus size: 40
64350064 CCGCACCAAG
* * * * * * *
64350074 GCCTACGGGACTTAACCCGGATATCACGA-TTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* ** *
64350113 GCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* *
64350153 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCAC-ATT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* *
64350192 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
64350218 TTTCCAGCAT
Statistics
Matches: 87, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 48 0.55
40 39 0.45
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
Found at i:64353879 original size:80 final size:80
Alignment explanation
Indices: 64353795--64353943 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
64353785 TATGGTAACC
* * * *
64353795 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
64353859 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
64353875 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
64353940 CCGG
66 CCGG
64353944 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:64353885 original size:40 final size:38
Alignment explanation
Indices: 64353836--64353943 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
64353826 ATCACGATTT
*
64353836 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
64353876 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
64353916 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
64353944 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:64356074 original size:24 final size:24
Alignment explanation
Indices: 64355991--64356082 Score: 87
Period size: 24 Copynumber: 3.7 Consensus size: 24
64355981 TGACATTGTG
* * * *
64355991 CTAAGTGAAA-AAGACCACGTCAT
1 CTAAGTGAAATAAGTCCATGGCAA
* *
64356014 CTAAGTGAAATAAGTGCATGGCTATGTG
1 CTAAGTGAAATAAGTCCATGGC-A---A
64356042 CTAAGTGAAATAAGTCCATGGCAA
1 CTAAGTGAAATAAGTCCATGGCAA
64356066 CTAAGTGAAATAAGTCC
1 CTAAGTGAAATAAGTCC
64356083 GTGGAATTGT
Statistics
Matches: 57, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
23 10 0.18
24 24 0.42
25 1 0.02
27 1 0.02
28 21 0.37
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (24 bp):
CTAAGTGAAATAAGTCCATGGCAA
Found at i:64356094 original size:52 final size:50
Alignment explanation
Indices: 64355985--64356097 Score: 136
Period size: 52 Copynumber: 2.2 Consensus size: 50
64355975 AGGATATGAC
* * *
64355985 ATTGTGCTAAGTGAAAAAGACCACGTCATCTAAGTGAAATAAGTGCATGG
1 ATTGTGCTAAGTGAAAAAGACCACGGCAACTAAGTGAAATAAGTCCATGG
* * * *
64356035 CTATGTGCTAAGTGAAATAAGTCCATGGCAACTAAGTGAAATAAGTCCGTGG
1 AT-TGTGCTAAGTGAAA-AAGACCACGGCAACTAAGTGAAATAAGTCCATGG
64356087 AATTGTGCTAA
1 -ATTGTGCTAA
64356098 CTGATAAATT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
50 1 0.02
51 14 0.27
52 36 0.69
53 1 0.02
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (50 bp):
ATTGTGCTAAGTGAAAAAGACCACGGCAACTAAGTGAAATAAGTCCATGG
Found at i:64356186 original size:51 final size:50
Alignment explanation
Indices: 64356125--64356272 Score: 208
Period size: 51 Copynumber: 2.9 Consensus size: 50
64356115 TGAATCTTAG
* *
64356125 GAATAAAATAGCTTTGGACACAAGTGTGATACTATGTGAAGGCTACTTTGT
1 GAATAAAATAGCTTTGGACACAA-TGTGGTACTATGTGAAGGCCACTTTGT
* * *
64356176 GAATATAATAGCTTTGGACACAACTATGGTACTATGTGAAGGCCATTTTGT
1 GAATAAAATAGCTTTGGACACAA-TGTGGTACTATGTGAAGGCCACTTTGT
64356227 GAATAAAATAGCTTTGG-CTACAATGGTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAT-GTGGTACTATGTGAAGGCCAC
64356273 CGTGTATCCG
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
50 2 0.02
51 84 0.98
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (50 bp):
GAATAAAATAGCTTTGGACACAATGTGGTACTATGTGAAGGCCACTTTGT
Found at i:64359084 original size:17 final size:18
Alignment explanation
Indices: 64359056--64359095 Score: 73
Period size: 17 Copynumber: 2.3 Consensus size: 18
64359046 TTTCTTTCGG
64359056 ATTGATTTACATTAGTGA
1 ATTGATTTACATTAGTGA
64359074 ATTGA-TTACATTAGTGA
1 ATTGATTTACATTAGTGA
64359091 ATTGA
1 ATTGA
64359096 ATAATACGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.35, C:0.05, G:0.17, T:0.42
Consensus pattern (18 bp):
ATTGATTTACATTAGTGA
Found at i:64362458 original size:48 final size:48
Alignment explanation
Indices: 64362370--64362588 Score: 196
Period size: 48 Copynumber: 4.6 Consensus size: 48
64362360 TGCGCTAATT
* * ** ** *
64362370 TAAGAACATGTCTGGGACATGGCGTCGGCCACATTATGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGAAATGTTGTGAGAGCCAGTG
* *
64362418 TAAGACCATGTTTGGAACATGGCATCGGAAATGTTGTGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGAAATGTTGTGAGAGCCAGTG
* * * *
64362466 TAAGACGATGTCTAGGACATGGCATC--AACATTGATATGTG-TA-CTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGAA-A-TG-T-TGTGAGAGCCAGTG
* * * **
64362514 TAAGACCATGTCTGGGACATGGCATCGGTATTG-AGATGAGAGTTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGAAATGTTG-TGAGAGCCAGTG
64362562 TAAGACCATGTCTGGGACATGGCATCG
1 TAAGACCATGTCTGGGACATGGCATCG
64362589 TCCTCGACAT
Statistics
Matches: 140, Mismatches: 22, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
45 1 0.01
46 4 0.03
47 2 0.01
48 126 0.90
49 2 0.01
50 5 0.04
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.25
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGAAATGTTGTGAGAGCCAGTG
Found at i:64362534 original size:96 final size:96
Alignment explanation
Indices: 64362409--64362642 Score: 274
Period size: 96 Copynumber: 2.4 Consensus size: 96
64362399 CACATTATGA
* * * * *
64362409 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGAAATGTTG-TGAGAGCCAGTGTAAGACG
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGAAATG-AGATGAGAGCCAGTGTAAGACC
* *
64362473 ATGTCTAGGACATGGCATCAACATTGATATGT
65 ATGTCTAGGACATGGCATCAACATCGACATGT
* * **
64362505 GTA-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGATGAGAGTTAGTGTAAGACC
1 G-AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGAAATGAGATGAGAGCCAGTGTAAGACC
* ** *
64362569 ATGTCTGGGACATGGCATCGTCCTCGACATGT
65 ATGTCTAGGACATGGCATCAACATCGACATGT
* *
64362601 GAGTTAGTGTAAGACCATGTCTTGGACATGGCATCGGCAAAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-AAAT
64362643 TAGCCTCTTG
Statistics
Matches: 115, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
95 2 0.02
96 110 0.96
97 3 0.03
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (96 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGAAATGAGATGAGAGCCAGTGTAAGACCA
TGTCTAGGACATGGCATCAACATCGACATGT
Found at i:64362605 original size:48 final size:48
Alignment explanation
Indices: 64362462--64362636 Score: 219
Period size: 48 Copynumber: 3.6 Consensus size: 48
64362452 TGTGAGAGCC
* * ** * *
64362462 AGTGTAAGACGATGTCTAGGACATGGCATCAACATTGATATGTGTA-CT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGTCATTGACATGTG-AGTT
* *
64362510 AGTGTAAGACCATGTCTGGGACATGGCATCGGT-ATTGAGATGAGAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GTCATTGACATGTGAGTT
* *
64362558 AGTGTAAGACCATGTCTGGGACATGGCATCGTCCTCGACATGTGAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGTCATTGACATGTGAGTT
*
64362606 AGTGTAAGACCATGTCTTGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
64362637 GCAAATTAGC
Statistics
Matches: 112, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
47 3 0.03
48 109 0.97
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGTCATTGACATGTGAGTT
Found at i:64373064 original size:40 final size:40
Alignment explanation
Indices: 64372979--64373129 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
64372969 AATTGAATGA
* * * *
64372979 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
64373019 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
64373060 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
64373099 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
64373130 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:64373143 original size:40 final size:40
Alignment explanation
Indices: 64373016--64373145 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
64373006 ATGCTGGAAA
* * *
64373016 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
64373056 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
64373096 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
64373136 TTATATCCGG
1 TTATATCCGG
64373146 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:64373144 original size:80 final size:80
Alignment explanation
Indices: 64372978--64373145 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
64372968 AAATTGAATG
* *
64372978 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
64373043 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
64373058 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
64373121 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
64373138 ATATCCGG
1 ATATCCGG
64373146 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:64381056 original size:40 final size:40
Alignment explanation
Indices: 64380997--64381148 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
64380987 AAATTGAATG
* * *
64380997 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTAGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAAATT
* ***
64381037 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAAATT
* * *
64381077 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGAAATT
* *
64381117 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
64381149 ACGTGGTTAT
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.03
40 89 0.95
41 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAAATT
Found at i:64381132 original size:80 final size:80
Alignment explanation
Indices: 64380999--64381163 Score: 217
Period size: 80 Copynumber: 2.1 Consensus size: 80
64380989 ATTGAATGAT
* * *
64380999 ATCCGGGCTAAGCCCCGAAGACAATTATGCTAGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGACAATTATGCGAGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
64381064 TGTGCTA-GTGGTTAC
66 TGTGC-ACGTGGTTAC
* * * * *
64381079 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTCTATCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGACAATT-ATGCGAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
64381143 TTGTGCACGTGGTTAT
65 TTGTGCACGTGGTTAC
64381159 ATCCG
1 ATCCG
64381164 ATTATATTCC
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
79 4 0.05
80 70 0.95
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGACAATTATGCGAGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCACGTGGTTAC
Found at i:64385207 original size:15 final size:15
Alignment explanation
Indices: 64385187--64385215 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
64385177 ATTCCAAATG
64385187 GCTTGTTCCACCGCA
1 GCTTGTTCCACCGCA
64385202 GCTTGTTCCACCGC
1 GCTTGTTCCACCGC
64385216 TACTTTCTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.41, G:0.21, T:0.28
Consensus pattern (15 bp):
GCTTGTTCCACCGCA
Found at i:64387809 original size:24 final size:25
Alignment explanation
Indices: 64387782--64387842 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 25
64387772 TCAAAAAAAA
*
64387782 CCATGGCAT-CTAAGTGAAATAAGT
1 CCATGGCATGCTAAATGAAATAAGT
64387806 CCATGGCAATGTGCTAAATGAAATAAGT
1 CCATGGC-A--TGCTAAATGAAATAAGT
64387834 CCATGGCAT
1 CCATGGCAT
64387843 TGTGCTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
24 7 0.22
25 2 0.06
27 2 0.06
28 21 0.66
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (25 bp):
CCATGGCATGCTAAATGAAATAAGT
Found at i:64387831 original size:28 final size:28
Alignment explanation
Indices: 64387791--64387850 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
64387781 ACCATGGCAT
*
64387791 CTAAGTGAAATAAGTCCATGGCAATGTG
1 CTAAATGAAATAAGTCCATGGCAATGTG
*
64387819 CTAAATGAAATAAGTCCATGGCATTGTG
1 CTAAATGAAATAAGTCCATGGCAATGTG
64387847 CTAA
1 CTAA
64387851 GTGAGAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.27
Consensus pattern (28 bp):
CTAAATGAAATAAGTCCATGGCAATGTG
Found at i:64387933 original size:51 final size:51
Alignment explanation
Indices: 64387878--64388128 Score: 441
Period size: 51 Copynumber: 4.9 Consensus size: 51
64387868 TGAACCTTAG
64387878 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
64387929 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGCCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
64387980 GAATATAATAGCTTTGGACACAAGTGTGGTACTATATGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
64388031 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
64388082 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCACT
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCACT
64388129 ATTTATGTGT
Statistics
Matches: 192, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
50 1 0.01
51 191 0.99
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:64388849 original size:15 final size:17
Alignment explanation
Indices: 64388815--64388851 Score: 60
Period size: 15 Copynumber: 2.3 Consensus size: 17
64388805 ATACGTATAC
64388815 ACATTCATAATCAGAAT
1 ACATTCATAATCAGAAT
64388832 ACATTCAT-ATCA-AAT
1 ACATTCATAATCAGAAT
64388847 ACATT
1 ACATT
64388852 GTCCCTTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 8 0.40
16 4 0.20
17 8 0.40
ACGTcount: A:0.46, C:0.19, G:0.03, T:0.32
Consensus pattern (17 bp):
ACATTCATAATCAGAAT
Found at i:64390353 original size:43 final size:42
Alignment explanation
Indices: 64390304--64390453 Score: 151
Period size: 43 Copynumber: 3.5 Consensus size: 42
64390294 TATCCCATAT
* * *
64390304 ATGGTCTTACATGTTATCACATATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGTAATCACA-ATCGATGCCAATGTCCCAGAC
* * *
64390347 AGGGTCTTACACG-AACTTGATTAAT-GATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAA--TCA-CAATCGATGCCAATGTCCCAGAC
* * *
64390390 ATGGTCTTATACGTAATCTCAATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACAAT-CGATGCCAATGTCCCAGAC
*
64390433 ATGGTCTTACATGTAATCACA
1 ATGGTCTTACACGTAATCACA
64390454 TCTCGAATAC
Statistics
Matches: 86, Mismatches: 15, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
41 3 0.03
42 2 0.02
43 74 0.86
44 6 0.07
45 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (42 bp):
ATGGTCTTACACGTAATCACAATCGATGCCAATGTCCCAGAC
Found at i:64400769 original size:29 final size:29
Alignment explanation
Indices: 64400656--64400757 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
64400646 AAAATTGTAC
*
64400656 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
64400685 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
*
64400714 AACACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
64400743 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
64400758 GATTCACTAT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:64402936 original size:40 final size:40
Alignment explanation
Indices: 64402851--64403001 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
64402841 AATTGAATGA
* * *
64402851 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
64402891 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
64402932 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
64402971 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
64403002 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:64403015 original size:40 final size:40
Alignment explanation
Indices: 64402888--64403017 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
64402878 ATGCTGGAAA
* * * *
64402888 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
64402928 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
64402968 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
64403008 TTATATCCGG
1 TTATATCCGG
64403018 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:64410930 original size:38 final size:38
Alignment explanation
Indices: 64410799--64410946 Score: 149
Period size: 40 Copynumber: 3.8 Consensus size: 38
64410789 AATTGAATGA
* * * *
64410799 TATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATTC
* * *
64410838 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-TC
64410876 TACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATTC
1 T--ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATTC
*
64410916 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
64410947 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
37 1 0.01
38 28 0.31
39 17 0.19
40 44 0.48
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATTC
Found at i:64410961 original size:78 final size:78
Alignment explanation
Indices: 64410798--64410962 Score: 201
Period size: 78 Copynumber: 2.1 Consensus size: 78
64410788 AAATTGAATG
*
64410798 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCAA
64410863 TTGTGCTAGTGGCT
65 TTGTGCTAGTGGCT
* * * * *
64410877 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
* *
64410940 TTTGTGC-ACGTGGTT
64 ATTGTGCTA-GTGGCT
64410955 ATATCCGG
1 ATATCCGG
64410963 TTATATTCCG
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
77 1 0.01
78 46 0.62
79 16 0.22
80 11 0.15
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGGCT
Found at i:64419925 original size:40 final size:40
Alignment explanation
Indices: 64419851--64420028 Score: 157
Period size: 40 Copynumber: 4.5 Consensus size: 40
64419841 GAATCACGTA
* **
64419851 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAACAACTCGCACAATTG
* *** *
64419890 CCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACAATTG
*
64419930 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAACAACTCGCAC-AATTG
* * * * *
64419970 CCTTCGGGTCTTAGCCCAGATATAATC-ACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAA-CAACTCGCACAATTG
* *
64420010 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
64420029 GTATCATTCA
Statistics
Matches: 116, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 98 0.84
41 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAACAACTCGCACAATTG
Found at i:64420012 original size:80 final size:80
Alignment explanation
Indices: 64419851--64420028 Score: 198
Period size: 80 Copynumber: 2.2 Consensus size: 80
64419841 GAATCACGTA
* * * * * **
64419851 CCTTCGGGATTTA-ACCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCAGATATAA
* *
64419915 TAACTTGCACAATTG
66 TAACTAGCACAAATG
* ** *
64419930 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCAGATATA
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCAGATATA
* *
64419994 ATCACTAGCATAAATG
65 ATAACTAGCACAAATG
64420010 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
64420029 GTATCATTCA
Statistics
Matches: 81, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
79 11 0.14
80 68 0.84
81 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCAGATATAA
TAACTAGCACAAATG
Found at i:64422780 original size:27 final size:27
Alignment explanation
Indices: 64422750--64422835 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
64422740 GTAAATCTAC
64422750 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
64422777 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
64422803 AGAAAGTCAAGGGTATTTCTGTAGTTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
64422833 AAA
1 AAA
64422836 TTAGGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
26 1 0.02
27 22 0.46
28 7 0.15
29 17 0.35
30 1 0.02
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:64422857 original size:27 final size:27
Alignment explanation
Indices: 64422837--64422936 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
64422827 TTTTGTAAAT
64422837 TAGGGGTATTTTGGTAATTTTACAAA-
1 TAGGGGTATTTTGGTAATTTTACAAAC
* * *
64422863 TTGAGGGTATTTCGGTAATTTCACAAAC
1 TAG-GGGTATTTTGGTAATTTTACAAAC
* ** *
64422891 CAATGGTATTTTGCTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
64422918 TAGGGGTATTTTGGTAATT
1 TAGGGGTATTTTGGTAATT
64422937 CTACCCTATA
Statistics
Matches: 58, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
26 2 0.03
27 56 0.97
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
TAGGGGTATTTTGGTAATTTTACAAAC
Found at i:64422987 original size:26 final size:25
Alignment explanation
Indices: 64422956--64423059 Score: 93
Period size: 27 Copynumber: 3.9 Consensus size: 25
64422946 AGGGGTGTTT
64422956 CAGTAATTTCACAATCGAGGGTAAAA
1 CAGTAATTTCA-AATCGAGGGTAAAA
* *
64422982 CGGTAATTTAGTAAATCGAGGGTAAAA
1 CAGTAATTT--CAAATCGAGGGTAAAA
*
64423009 CAGT-ATTTCTGTAAATCAAGGGTAAAA
1 CAGTAATTTC---AAATCGAGGGTAAAA
*
64423036 CAGTAATTCTATAAATCGAGGGTA
1 CAGTAATT-T-CAAATCGAGGGTA
64423060 CTTTGGTAAT
Statistics
Matches: 63, Mismatches: 7, Indels: 15
0.74 0.08 0.18
Matches are distributed among these distances:
26 12 0.19
27 46 0.73
28 4 0.06
29 1 0.02
ACGTcount: A:0.40, C:0.12, G:0.21, T:0.27
Consensus pattern (25 bp):
CAGTAATTTCAAATCGAGGGTAAAA
Found at i:64422998 original size:27 final size:27
Alignment explanation
Indices: 64422968--64423059 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
64422958 GTAATTTCAC
*
64422968 AATCGAGGGTAAAACGGTAATTTAGTA
1 AATCGAGGGTAAAACAGTAATTTAGTA
*
64422995 AATCGAGGGTAAAACAGT-ATTTCTGTA
1 AATCGAGGGTAAAACAGTAATTT-AGTA
*
64423022 AATCAAGGGTAAAACAGTAATTCTA-TA
1 AATCGAGGGTAAAACAGTAATT-TAGTA
64423049 AATCGAGGGTA
1 AATCGAGGGTA
64423060 CTTTGGTAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
26 4 0.07
27 49 0.86
28 3 0.05
29 1 0.02
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTTAGTA
Found at i:64424998 original size:68 final size:67
Alignment explanation
Indices: 64424926--64425075 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
64424916 CATCATGTGT
* * * *
64424926 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
64424988 ATGTAG
62 ATGTAG
** * *
64424994 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
64425059 AG
66 AG
64425061 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
64425076 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:64425031 original size:64 final size:64
Alignment explanation
Indices: 64424950--64425133 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
64424940 AGACATTATG
* *
64424950 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
64425014 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
64425079 AA
63 AA
* * * *
64425081 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
64425134 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:64426226 original size:2 final size:2
Alignment explanation
Indices: 64426219--64426243 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
64426209 TCATGACATG
64426219 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
64426244 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:64428230 original size:27 final size:27
Alignment explanation
Indices: 64428190--64428414 Score: 272
Period size: 27 Copynumber: 8.3 Consensus size: 27
64428180 ACAGCAGACC
* * *
64428190 CCCTTATGTGATAAAATGAATATTTTC
1 CCCTTATGTAATAAAATGACTATTTTG
*
64428217 CCCTTATGTAATAAAATGATTATTTTG
1 CCCTTATGTAATAAAATGACTATTTTG
*
64428244 CCCTTATGTGATAAAATGACTATTTTG
1 CCCTTATGTAATAAAATGACTATTTTG
*
64428271 CCCTTATGTAATAAAATGACTATTTTA
1 CCCTTATGTAATAAAATGACTATTTTG
64428298 CCCTTATGTAATAAAATGACTATTTTG
1 CCCTTATGTAATAAAATGACTATTTTG
* *
64428325 CCCTTATGTGATAAAATGACCT-TTTTT
1 CCCTTATGTAATAAAATGA-CTATTTTG
* ** * *
64428352 CCCTCATGTGGTAAAATGATTGTTTTG
1 CCCTTATGTAATAAAATGACTATTTTG
* ** *
64428379 CCCTTATATGGTAAAATGACTGTTTTG
1 CCCTTATGTAATAAAATGACTATTTTG
*
64428406 CCCCTATGT
1 CCCTTATGT
64428415 GATATATGTT
Statistics
Matches: 177, Mismatches: 19, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
26 1 0.01
27 174 0.98
28 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.41
Consensus pattern (27 bp):
CCCTTATGTAATAAAATGACTATTTTG
Found at i:64428325 original size:81 final size:81
Alignment explanation
Indices: 64428190--64428418 Score: 307
Period size: 81 Copynumber: 2.8 Consensus size: 81
64428180 ACAGCAGACC
* *
64428190 CCCTTATGTGATAAAATGAATATTTTCCCCTTATGTAATAAAATGATTATTTTGCCCTTATGTGA
1 CCCTTATGTGATAAAATGAATATTTTACCCTTATGTAATAAAATGACTATTTTGCCCTTATGTGA
64428255 TAAAATGA-CTATTTTG
66 TAAAATGACCT-TTTTG
* *
64428271 CCCTTATGTAATAAAATGACTATTTTACCCTTATGTAATAAAATGACTATTTTGCCCTTATGTGA
1 CCCTTATGTGATAAAATGAATATTTTACCCTTATGTAATAAAATGACTATTTTGCCCTTATGTGA
*
64428336 TAAAATGACCTTTTTT
66 TAAAATGACCTTTTTG
* * * * * * ** * *
64428352 CCCTCATGTGGTAAAATGATTGTTTTGCCCTTATATGGTAAAATGACTGTTTTGCCCCTATGTGA
1 CCCTTATGTGATAAAATGAATATTTTACCCTTATGTAATAAAATGACTATTTTGCCCTTATGTGA
64428417 TA
66 TA
64428419 TATGTTTATA
Statistics
Matches: 131, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
81 129 0.98
82 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.41
Consensus pattern (81 bp):
CCCTTATGTGATAAAATGAATATTTTACCCTTATGTAATAAAATGACTATTTTGCCCTTATGTGA
TAAAATGACCTTTTTG
Found at i:64429914 original size:18 final size:17
Alignment explanation
Indices: 64429882--64429915 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
64429872 GTGTGACCTT
64429882 TTTAATTTAGAAAAATG
1 TTTAATTTAGAAAAATG
*
64429899 TTTAAGTTTTGAAAAAT
1 TTTAA-TTTAGAAAAAT
64429916 TTTGTATCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (17 bp):
TTTAATTTAGAAAAATG
Found at i:64434794 original size:40 final size:40
Alignment explanation
Indices: 64434692--64434906 Score: 314
Period size: 40 Copynumber: 5.5 Consensus size: 40
64434682 CGGATGATAA
* * *
64434692 CCGGGCTAAGTCCAGAAGGCATTTGTGCTAGTGACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
64434731 TCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
64434770 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
64434810 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
64434850 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
64434890 CC-GGCTAAATCCC-AAGG
1 CCGGGCTAAGTCCCGAAGG
64434907 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
38 27 0.17
39 32 0.20
40 103 0.64
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:64442788 original size:40 final size:40
Alignment explanation
Indices: 64442733--64442949 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
64442723 CGGATGATAA
* *
64442733 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
64442773 CCGGGCTAAGCCCCGAAGGCATTTGT-CGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
64442812 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
64442852 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
64442892 CCGGGCTAAGTCCTGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
64442932 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
64442950 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 12, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
39 50 0.31
40 112 0.69
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:64442871 original size:79 final size:80
Alignment explanation
Indices: 64442729--64442949 Score: 324
Period size: 79 Copynumber: 2.8 Consensus size: 80
64442719 TATTCGGATG
* * *
64442729 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGCCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGC
64442793 ATTTGT-CGAGTTACT
65 ATTTGTGCGAGTTACT
* *
64442808 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCAAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
64442873 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* * *
64442888 ATAACCGGGCTAAGTCCTGAAGGCATTTGAGCGAG-TAGCTATATCC-GGCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
64442950 TACTTGGTTT
Statistics
Matches: 129, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
79 79 0.61
80 50 0.39
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Done.