Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 213 of 410
Found at i:65113558 original size:40 final size:40
Alignment explanation
Indices: 65113508--65113708 Score: 357
Period size: 40 Copynumber: 5.0 Consensus size: 40
65113498 GATTACACAT
* * *
65113508 CACCAGCACGAATGCCCTTCAGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
65113548 CACCAGCACGAATGCTCTTCGGCACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
65113588 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
65113628 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
65113668 CACCAGCACGAATGCTTTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
65113708 C
1 C
65113709 TCTCAATTCT
Statistics
Matches: 155, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 155 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:65122144 original size:126 final size:126
Alignment explanation
Indices: 65121803--65122320 Score: 672
Period size: 126 Copynumber: 4.1 Consensus size: 126
65121793 GCTAAGCAAA
* * * *
65121803 AACTACTATAGAAAAAGAGTGTCTACGTGGGAACTTTTTTCAGTAATTTTGCTGACAG-CCTATC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAACTTTTTTCAGTAATTTTGCTGACAGTGC-ATC
* * * * *
65121867 CTGCTTGAAGCGTTTTTGACATTATTTTTTTAGAGCTGTCTTTTTAAAATTATTTTTT-TAG
65 CTGCTTGAAGCGTTTTTGACATTATTTTTTCAGAACCGTCTTCTTAAAATTATTTTTTCAAG
* * * *
65121928 AAACTACTGTAGAAAAAGAACGTCCATGT-GGAACTTTTTTCAGCAATTTTG-TAGACAGTGAAT
1 -AACTACTGTAGAAAAAGAGCGTCCACGTGGGAACTTTTTTCAGTAATTTTGCT-GACAGTGCAT
*
65121991 CCTGCTTGAAGCGTTTTTGACTTTATTTTTTCAGAACCGTCTTCTTAAAATTATTTTTTCAAG
64 CCTGCTTGAAGCGTTTTTGACATTATTTTTTCAGAACCGTCTTCTTAAAATTATTTTTTCAAG
* *
65122054 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAACTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * * * * * * *
65122119 TGCTTAAAGCG-TTTTGTACACTATTTTTACAAAATCGTCTTCTCAAATTTATTTTTTCAGG
66 TGCTTGAAGCGTTTTTG-ACATTATTTTTTCAGAACCGTCTTCTTAAAATTATTTTTTCAAG
* *
65122180 AACTACTGTAGAAAAAAAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAACTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * * *
65122245 TACTTGAAGTGTTTTTGACATTATCTTTTT-AGAACCGTCTTC-TCAAATTAATTTTTCAAG
66 TGCTTGAAGCGTTTTTGACATTAT-TTTTTCAGAACCGTCTTCTTAAAATTATTTTTTCAAG
65122305 AACTACTGTAGAAAAA
1 AACTACTGTAGAAAAA
65122321 AAATTCTTCT
Statistics
Matches: 341, Mismatches: 43, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
124 1 0.00
125 142 0.42
126 188 0.55
127 10 0.03
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (126 bp):
AACTACTGTAGAAAAAGAGCGTCCACGTGGGAACTTTTTTCAGTAATTTTGCTGACAGTGCATCC
TGCTTGAAGCGTTTTTGACATTATTTTTTCAGAACCGTCTTCTTAAAATTATTTTTTCAAG
Found at i:65122302 original size:251 final size:251
Alignment explanation
Indices: 65121803--65122320 Score: 690
Period size: 251 Copynumber: 2.1 Consensus size: 251
65121793 GCTAAGCAAA
* * *
65121803 AACTACTATAGAAAAAGAGTGTCTACGTGGGAACTTTTTTCAGTAATTTTGCTGACAGCCTATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAACTTTTTTCAGTAATTTTGCTGACAGCCTATCC
* * ** * * * *
65121868 TGCTTGAAGCGTTTTTGACATTATTTTTTTAGAGCTGTCTTTTTAAAATTATTTTTTTAGAAACT
66 TGCTTAAAGCGTTTTTGACACTATTTTTCAAAAGCTGTCTTCTCAAAATTATTTTTTCAGAAACT
* *
65121933 ACTGTAGAAAAAGAACGTCCATGTGGAACTTTTTTCAGCAATTTTGTAGACAGTGAATCCTGCTT
131 ACTGTAGAAAAAGAACGTCCACGTGGAACTTTTTTCAGCAATTTTGTAGACAGTGAATCCTACTT
* *
65121998 GAAGCGTTTTTGACTTTATTTTTTCAGAACCGTCTTCTTAAAATTATTTTTTCAAG
196 GAAGCGTTTTTGACATTATTTTTTCAGAACCGTCTTCTTAAAATTAATTTTTCAAG
* * *
65122054 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGC-ATC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAACTTTTTTCAGTAATTTTGCTGACAG-CCTATC
* * *
65122118 CTGCTTAAAGCG-TTTTGTACACTATTTTTACAAAATC-GTCTTCTCAAATTTATTTTTTCAGGA
65 CTGCTTAAAGCGTTTTTG-ACACTATTTTT-CAAAAGCTGTCTTCTCAAAATTATTTTTTCAGAA
* * *
65122181 ACTACTGTAGAAAAA-AAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCT-GACAGTGCATC
128 ACTACTGTAGAAAAAGAA-CGTCCACGT-GGAACTTTTTTCAGCAATTTTG-TAGACAGTGAATC
* *
65122244 CTACTTGAAGTGTTTTTGACATTATCTTTTT-AGAACCGTCTTC-TCAAATTAATTTTTCAAG
190 CTACTTGAAGCGTTTTTGACATTAT-TTTTTCAGAACCGTCTTCTTAAAATTAATTTTTCAAG
65122305 AACTACTGTAGAAAAA
1 AACTACTGTAGAAAAA
65122321 AAATTCTTCT
Statistics
Matches: 234, Mismatches: 26, Indels: 14
0.85 0.09 0.05
Matches are distributed among these distances:
250 7 0.03
251 153 0.65
252 68 0.29
253 6 0.03
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (251 bp):
AACTACTGTAGAAAAAGAGCGTCCACGTGGGAACTTTTTTCAGTAATTTTGCTGACAGCCTATCC
TGCTTAAAGCGTTTTTGACACTATTTTTCAAAAGCTGTCTTCTCAAAATTATTTTTTCAGAAACT
ACTGTAGAAAAAGAACGTCCACGTGGAACTTTTTTCAGCAATTTTGTAGACAGTGAATCCTACTT
GAAGCGTTTTTGACATTATTTTTTCAGAACCGTCTTCTTAAAATTAATTTTTCAAG
Found at i:65122537 original size:28 final size:27
Alignment explanation
Indices: 65122487--65122539 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
65122477 ATTAATTAAA
* **
65122487 AAAATTCTAAAGCCTGATTTATTTTTT
1 AAAATTCTAAAGCCTAAACTATTTTTT
65122514 AAAATTCCTAAAGCCTAAACTATTTT
1 AAAATT-CTAAAGCCTAAACTATTTT
65122540 AACAAAACAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 6 0.27
28 16 0.73
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.42
Consensus pattern (27 bp):
AAAATTCTAAAGCCTAAACTATTTTTT
Found at i:65123594 original size:89 final size:89
Alignment explanation
Indices: 65123440--65123618 Score: 308
Period size: 89 Copynumber: 2.0 Consensus size: 89
65123430 GGAAACGACG
65123440 GCTTTTACACCATCCCTCATTAATTTACAATAGTAGAAGAAGAACAGTAAAAAAAATAAAGAAAA
1 GCTTTTACACCATCCCTCATTAATTTACAATAGTAGAAGAAGAACAGTAAAAAAAATAAAGAAAA
*
65123505 AAATGCAACCCGTGTGTTTTCTTT
66 AAATGCAACCCGTGTGTTTGCTTT
* *
65123529 GCTTTTACACCATCCC-CTATTAATTTGCAATAGTAGAAGAAGAACAGT-AACAAAATAAAGAAA
1 GCTTTTACACCATCCCTC-ATTAATTTACAATAGTAGAAGAAGAACAGTAAAAAAAATAAAGAAA
65123592 AAAATGCAACCCGTGTGTTTGCTTT
65 AAAATGCAACCCGTGTGTTTGCTTT
65123617 GC
1 GC
65123619 CAAAACAGAA
Statistics
Matches: 86, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
88 41 0.48
89 45 0.52
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (89 bp):
GCTTTTACACCATCCCTCATTAATTTACAATAGTAGAAGAAGAACAGTAAAAAAAATAAAGAAAA
AAATGCAACCCGTGTGTTTGCTTT
Found at i:65124764 original size:61 final size:55
Alignment explanation
Indices: 65124638--65124743 Score: 212
Period size: 55 Copynumber: 1.9 Consensus size: 55
65124628 TACAAAAGTT
65124638 AATCACATAAATCAGCTACCTAAAAAAACTCATAATCATTTTCAAGTTTAAATTA
1 AATCACATAAATCAGCTACCTAAAAAAACTCATAATCATTTTCAAGTTTAAATTA
65124693 AATCACATAAATCAGCTACCTAAAAAAACTCATAATCATTTTCAAGTTTAA
1 AATCACATAAATCAGCTACCTAAAAAAACTCATAATCATTTTCAAGTTTAA
65124744 GTACTAATTA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.47, C:0.19, G:0.04, T:0.30
Consensus pattern (55 bp):
AATCACATAAATCAGCTACCTAAAAAAACTCATAATCATTTTCAAGTTTAAATTA
Found at i:65126601 original size:17 final size:17
Alignment explanation
Indices: 65126579--65126611 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
65126569 CAAAATTTCG
65126579 ATCAGTTTGGAAGCTCA
1 ATCAGTTTGGAAGCTCA
65126596 ATCAGTTTGGAAGCTC
1 ATCAGTTTGGAAGCTC
65126612 GTCGAAGATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (17 bp):
ATCAGTTTGGAAGCTCA
Found at i:65127910 original size:46 final size:46
Alignment explanation
Indices: 65127852--65128067 Score: 179
Period size: 46 Copynumber: 4.6 Consensus size: 46
65127842 GGGCTATTGT
* * *
65127852 GAGCTAGTGTAAGACATGTCTGGGACATGCAACGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-GATGA
* * * *
65127898 GAGCCAGTGTAAGACCATTTCTAGGATATGGCATCGG-CATCGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGAGATGA
* * * * *
65127946 -ATGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCTAGACGTA
1 GA-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATG-A
* * * *
65127993 -AGCCAGTGTAAAACATGTCTGGGACATGCGTCAGCTACGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGA
* *
65128038 TAGTCAGTGTAAGACCATGTCTGGGACATG
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG
65128068 GCTTCGACTT
Statistics
Matches: 136, Mismatches: 25, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
45 1 0.01
46 71 0.52
47 42 0.31
48 21 0.15
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGA
Found at i:65128082 original size:47 final size:48
Alignment explanation
Indices: 65127857--65128122 Score: 132
Period size: 47 Copynumber: 5.7 Consensus size: 48
65127847 ATTGTGAGCT
* * * *
65127857 AGTGTAAGA-CATGTCTGGGACAT-GCAACGGCCAC-A-TTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATATGA-A-CC
* * * * * *
65127903 AGTGTAAGACCATTTCTAGGATATGGCATCGGC-ATCGAG--ACGAATGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTA-CGAGATATGAA--CC
* * * **
65127951 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCT-CTAGACGT-AAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTACGAGATATGAA-CC
* * **
65127997 AGTGTAA-AACATGTCTGGGACAT-GCGTC-AGCTACGAGATGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CTACGAGAT-ATGAACC
* *
65128043 AGTGTAAGACCATGTCTGGGACATGGCTTCGACT-TGAGATATGAACC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATATGAACC
* *
65128090 AGTGTAAGACCGTGTCTGGGACACGGCATCGAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC
65128123 ACCTTATCCC
Statistics
Matches: 171, Mismatches: 31, Indels: 35
0.72 0.13 0.15
Matches are distributed among these distances:
45 3 0.02
46 57 0.33
47 81 0.47
48 28 0.16
49 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATATGAACC
Found at i:65131325 original size:40 final size:39
Alignment explanation
Indices: 65131204--65131358 Score: 184
Period size: 39 Copynumber: 3.9 Consensus size: 39
65131194 TGTGTATGAA
* *
65131204 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
65131243 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
65131282 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
65131322 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
65131359 GTTTGAACGA
Statistics
Matches: 99, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 58 0.59
40 41 0.41
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:65131344 original size:79 final size:79
Alignment explanation
Indices: 65131204--65131358 Score: 204
Period size: 79 Copynumber: 2.0 Consensus size: 79
65131194 TGTGTATGAA
** *
65131204 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAGCTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAGCTACCATAACCGGGCTAA
65131269 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * * * *
65131282 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATGGTGCGAGCTACCATAACCGGGCTA
*
65131347 TGTCCCGAAGGC
65 AGTCCCGAAGGC
65131359 GTTTGAACGA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
78 25 0.38
79 31 0.48
80 9 0.14
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAGCTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:65137079 original size:15 final size:15
Alignment explanation
Indices: 65137059--65137094 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
65137049 GGCTTGTAGG
*
65137059 TTTTTTTTTT-CTTT
1 TTTTTTTTTTAATTT
65137073 TTTTTTTTTTAATTT
1 TTTTTTTTTTAATTT
65137088 TTTTTTT
1 TTTTTTT
65137095 ATTGATAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.06, C:0.03, G:0.00, T:0.92
Consensus pattern (15 bp):
TTTTTTTTTTAATTT
Found at i:65140156 original size:30 final size:30
Alignment explanation
Indices: 65140120--65140184 Score: 130
Period size: 30 Copynumber: 2.2 Consensus size: 30
65140110 GGAAAAGAAA
65140120 AGGATGTACATCTCCCCTTGGATGATGAAG
1 AGGATGTACATCTCCCCTTGGATGATGAAG
65140150 AGGATGTACATCTCCCCTTGGATGATGAAG
1 AGGATGTACATCTCCCCTTGGATGATGAAG
65140180 AGGAT
1 AGGAT
65140185 ATTACATTCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (30 bp):
AGGATGTACATCTCCCCTTGGATGATGAAG
Found at i:65140583 original size:11 final size:11
Alignment explanation
Indices: 65140563--65140602 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
65140553 TATTCAATAA
65140563 CATAAACCAAT
1 CATAAACCAAT
*
65140574 CATAACCCAAT
1 CATAAACCAAT
*
65140585 CCTAAACCAAT
1 CATAAACCAAT
65140596 CATAAAC
1 CATAAAC
65140603 ATACATACCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (11 bp):
CATAAACCAAT
Found at i:65144554 original size:6 final size:6
Alignment explanation
Indices: 65144543--65144682 Score: 262
Period size: 6 Copynumber: 23.3 Consensus size: 6
65144533 ACACCGTAGG
*
65144543 GTAACA GTAACA GTAACA GTAACA TTAACA GTAACA GTAACA GTAACA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA
*
65144591 GTAACA GTAACA GTAACA GTAACA TTAACA GTAACA GTAACA GTAACA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA
65144639 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GT
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GT
65144683 CATAATCAGG
Statistics
Matches: 130, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 130 1.00
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:65145536 original size:11 final size:11
Alignment explanation
Indices: 65145520--65145555 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
65145510 TAAAACCTTA
65145520 TTTTTCCTTTC
1 TTTTTCCTTTC
*
65145531 TTTTTCTTTTC
1 TTTTTCCTTTC
*
65145542 TTTTTTCTTTC
1 TTTTTCCTTTC
65145553 TTT
1 TTT
65145556 CTTTCCCTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTTCCTTTC
Found at i:65146580 original size:46 final size:46
Alignment explanation
Indices: 65146513--65146606 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
65146503 TATCGAAAGC
*
65146513 TGCTTTCAATCATTCTCGAATCTTTCTAATAGTGTTTTCCGTTTCT
1 TGCTTTCAATCATTCTCGAATCTTTCTAACAGTGTTTTCCGTTTCT
*
65146559 TGCTTTCAATCGTTCTCGAATCTTTCTAACAGTGTTTTCCGTTTCT
1 TGCTTTCAATCATTCTCGAATCTTTCTAACAGTGTTTTCCGTTTCT
65146605 TG
1 TG
65146607 AATTAACTCT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.16, C:0.22, G:0.13, T:0.49
Consensus pattern (46 bp):
TGCTTTCAATCATTCTCGAATCTTTCTAACAGTGTTTTCCGTTTCT
Found at i:65152118 original size:6 final size:6
Alignment explanation
Indices: 65152107--65152144 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
65152097 ACACCGTAGG
* *
65152107 GTAACA GTAACA GTAATA GTAACA GTAACA TTAACA GT
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GT
65152145 CATAATCAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.47, C:0.13, G:0.16, T:0.24
Consensus pattern (6 bp):
GTAACA
Found at i:65152998 original size:11 final size:11
Alignment explanation
Indices: 65152982--65153016 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
65152972 TAAAACCCTA
65152982 TTTTTCCTTTC
1 TTTTTCCTTTC
*
65152993 TTTTTCTTTTC
1 TTTTTCCTTTC
65153004 TTTTT-CTTTC
1 TTTTTCCTTTC
65153014 TTT
1 TTT
65153017 CTTTCCCTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 7 0.32
11 15 0.68
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTTCCTTTC
Found at i:65153013 original size:15 final size:15
Alignment explanation
Indices: 65152995--65153064 Score: 52
Period size: 15 Copynumber: 4.5 Consensus size: 15
65152985 TTCCTTTCTT
65152995 TTTCTTTTCTTTTTC
1 TTTCTTTTCTTTTTC
**
65153010 TTTC-TTTCTTTCCC
1 TTTCTTTTCTTTTTC
**
65153024 TGTTCTATTTCATCCTTC
1 T-TTCT-TTTC-TTTTTC
*
65153042 TTTCTTTCCTTTTTC
1 TTTCTTTTCTTTTTC
*
65153057 TTTATTTT
1 TTTCTTTT
65153065 ATTTCTTTAT
Statistics
Matches: 40, Mismatches: 11, Indels: 8
0.68 0.19 0.14
Matches are distributed among these distances:
14 9 0.22
15 17 0.43
16 3 0.08
17 8 0.20
18 3 0.08
ACGTcount: A:0.04, C:0.24, G:0.01, T:0.70
Consensus pattern (15 bp):
TTTCTTTTCTTTTTC
Found at i:65153102 original size:20 final size:19
Alignment explanation
Indices: 65153063--65153104 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
65153053 TTTCTTTATT
**
65153063 TTATTTCTTTATTATTTTA
1 TTATTTCTTTATTAGATTA
65153082 TTATTTCTTTTATTAGATTA
1 TTATTTC-TTTATTAGATTA
65153102 TTA
1 TTA
65153105 ACTATTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (19 bp):
TTATTTCTTTATTAGATTA
Found at i:65158400 original size:30 final size:30
Alignment explanation
Indices: 65158345--65158504 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
65158335 TATGTGAATC
65158345 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
65158374 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
65158404 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
65158433 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
65158461 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
65158491 CGCACACTTAGTGC
1 CGCACACTTAGTGC
65158505 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:65158437 original size:59 final size:57
Alignment explanation
Indices: 65158345--65158504 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
65158335 TATGTGAATC
*
65158345 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
65158404 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
65158461 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
65158505 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:65166190 original size:30 final size:30
Alignment explanation
Indices: 65166135--65166294 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
65166125 ATAGTGAATC
65166135 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
65166164 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
65166194 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
65166223 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
65166251 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
65166281 CGCACACTTAGTGC
1 CGCACACTTAGTGC
65166295 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:65166227 original size:59 final size:57
Alignment explanation
Indices: 65166135--65166294 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
65166125 ATAGTGAATC
*
65166135 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
65166194 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
65166251 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
65166295 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:65173890 original size:28 final size:29
Alignment explanation
Indices: 65173857--65173930 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 29
65173847 ATATTTTCAG
*
65173857 CTCGCACACTTAGTGCTATATAA-TCAAA
1 CTCGCACACTTAGTGCTATACAATTCAAA
* *
65173885 CTCGCACACTTAGTGCTGTACAATTTTAAA
1 CTCGCACACTTAGTGCTATACAA-TTCAAA
*
65173915 CCCGCACACTTAGTGC
1 CTCGCACACTTAGTGC
65173931 CAATCTTGTC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 21 0.52
30 19 0.47
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (29 bp):
CTCGCACACTTAGTGCTATACAATTCAAA
Found at i:65176376 original size:46 final size:46
Alignment explanation
Indices: 65176326--65176497 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
65176316 TGGTTGAGCA
*
65176326 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
65176372 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
65176419 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
65176465 CCCGAGCT-GTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
65176498 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
45 27 0.25
46 37 0.35
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:65183803 original size:46 final size:46
Alignment explanation
Indices: 65183753--65183925 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
65183743 TGGTTGAGCA
*
65183753 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
65183799 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
65183846 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
65183892 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
65183926 GGGCGGGTTA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:65183909 original size:93 final size:93
Alignment explanation
Indices: 65183750--65183920 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
65183740 GGATGGTTGA
* *
65183750 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
65183815 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
65183843 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
65183908 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
65183921 ACTTAGGGCG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:65190870 original size:40 final size:39
Alignment explanation
Indices: 65190815--65191018 Score: 223
Period size: 40 Copynumber: 5.1 Consensus size: 39
65190805 TGAATGAAAC
* ** *
65190815 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTG-TTATAT
*
65190855 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAG-TGTTATAT
65190895 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAG-TGTTATAT
* * * *
65190935 CCGGGCTAAGACCCGAAGGCATTGGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGT--TATAT
* **
65190975 CCGGGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT-GTTATAT
65191015 CCGG
1 CCGG
65191019 TTAGATTCCG
Statistics
Matches: 143, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 135 0.94
41 5 0.03
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGTTATAT
Found at i:65190948 original size:80 final size:79
Alignment explanation
Indices: 65190815--65191018 Score: 266
Period size: 80 Copynumber: 2.5 Consensus size: 79
65190805 TGAATGAAAC
* *
65190815 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTC
* ***
65190879 GTGCGAGTTGTTAAAT
64 GTGCAAGTTACCAAAT
* *
65190895 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTGG
1 CCGGGCTAAGACCCGAAGGCATT-GTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCG
65190960 TGCAAGTTACCAAAT
65 TGCAAGTTACCAAAT
* * *
65190975 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCTAGTTGTTATATCCGG
65191019 TTAGATTCCG
Statistics
Matches: 109, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
79 2 0.02
80 102 0.94
81 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCGT
GCAAGTTACCAAAT
Found at i:65199324 original size:40 final size:38
Alignment explanation
Indices: 65199272--65199388 Score: 121
Period size: 39 Copynumber: 3.0 Consensus size: 38
65199262 TCCAATTTCT
* *
65199272 AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTACC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATA--TAATACC
* * *
65199312 AGCACTAGGCCTGC-GGACTATAAGTCCGGATATAATACC
1 AGCACTAAGCCTGCGGGA-TTTAA-CCCGGATATAATACC
* *
65199351 AGCATTAAGCC-GCGGGATTTAACCCGGTTATAATACC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATATAATACC
65199388 A
1 A
65199389 CATAAATTTT
Statistics
Matches: 64, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
37 14 0.22
38 6 0.09
39 21 0.33
40 16 0.25
41 7 0.11
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (38 bp):
AGCACTAAGCCTGCGGGATTTAACCCGGATATAATACC
Found at i:65203159 original size:40 final size:40
Alignment explanation
Indices: 65203100--65203307 Score: 195
Period size: 40 Copynumber: 5.2 Consensus size: 40
65203090 CGGAATACAA
* * *
65203100 CCGGATATAACCACATGCACGAATGCCTTCAGGTCTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
65203140 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
*
65203180 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
65203220 CCGGATGTGGTC-ACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATAT-AACAACTTGCACGAAT-GCCTTCGGGTCTTAGC
* ** * ** * *
65203260 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
65203300 CCGGATAT
1 CCGGATAT
65203308 CATTCAATTG
Statistics
Matches: 138, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.02
40 131 0.95
41 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:65203240 original size:80 final size:80
Alignment explanation
Indices: 65203100--65203306 Score: 220
Period size: 80 Copynumber: 2.6 Consensus size: 80
65203090 CGGAATACAA
* * * *
65203100 CCGGATATAACCACATGCACGAATGCCTTCAGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
65203164 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
65203180 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
65203244 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
* ** * ** * *
65203260 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
65203307 TCATTCAATT
Statistics
Matches: 105, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
79 3 0.03
80 100 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:65218923 original size:29 final size:29
Alignment explanation
Indices: 65218890--65218992 Score: 152
Period size: 29 Copynumber: 3.6 Consensus size: 29
65218880 GTGACGAGAT
65218890 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
65218919 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
65218948 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
65218977 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
65218993 AGCTCGGAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:65226877 original size:29 final size:29
Alignment explanation
Indices: 65226844--65226946 Score: 152
Period size: 29 Copynumber: 3.6 Consensus size: 29
65226834 GTGACGAGAT
65226844 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
65226873 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
65226902 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
65226931 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
65226947 AGCTCGGAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:65230045 original size:42 final size:42
Alignment explanation
Indices: 65229988--65230105 Score: 141
Period size: 42 Copynumber: 2.8 Consensus size: 42
65229978 GACATATGAT
* *
65229988 TCGATATGTGTTTTCGTGTAAGACCACGTCTGGGACATTGGCA
1 TCGATATTTG-TTTCGTGTAAGACCACGTCTGGGACAGTGGCA
*
65230031 TC-ATATTTGATTTCGTGTAAGACC-CTGTCTGGGATAGTGGCA
1 TCGATATTTG-TTTCGTGTAAGACCAC-GTCTGGGACAGTGGCA
* *
65230073 TCGGTATTTGTTTACATGTAAGACCACGTCTGG
1 TCGATATTTGTTT-CGTGTAAGACCACGTCTGG
65230106 TTTGTTGGCA
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
41 1 0.02
42 39 0.60
43 24 0.37
44 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (42 bp):
TCGATATTTGTTTCGTGTAAGACCACGTCTGGGACAGTGGCA
Found at i:65232394 original size:40 final size:41
Alignment explanation
Indices: 65232310--65232403 Score: 113
Period size: 40 Copynumber: 2.3 Consensus size: 41
65232300 GTCGGTATCG
* * *
65232310 CACACCTAGTGCC-TTATATAGCCGAAGCTATGCCAACTCG
1 CACACTTAGTGCCATTATATAGCCGAAGCTATGCAAACTCA
**
65232350 CACACTTAGTGCCATT-TATAGCCGAAGCTATATTAAACT-A
1 CACACTTAGTGCCATTATATAGCCGAAGCTAT-GCAAACTCA
65232390 CACACTTAGTGCCA
1 CACACTTAGTGCCA
65232404 ATCATAGTCG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 41 0.87
41 6 0.13
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (41 bp):
CACACTTAGTGCCATTATATAGCCGAAGCTATGCAAACTCA
Found at i:65241230 original size:40 final size:40
Alignment explanation
Indices: 65241102--65241253 Score: 157
Period size: 40 Copynumber: 3.8 Consensus size: 40
65241092 ATAAGCATGT
* * *
65241102 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** *
65241142 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
65241182 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* *
65241222 GCATAATTGTCTTCGGCG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGG-GTCTTAGCCCGGATAT
65241254 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 2 0.02
40 89 0.95
41 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:65241236 original size:80 final size:80
Alignment explanation
Indices: 65241102--65241253 Score: 193
Period size: 80 Copynumber: 1.9 Consensus size: 80
65241092 ATAAGCATGT
*
65241102 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGG-GTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGCG-CTTAGC
65241166 CCGGATATAGCCACTA
65 CCGGATATAGCCACTA
* * ** * *
65241182 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGCGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGCGCTTAG
65241245 CCCGGATAT
64 CCCGGATAT
65241254 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
79 3 0.05
80 58 0.94
81 1 0.02
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGCGCTTAGCC
CGGATATAGCCACTA
Found at i:65242982 original size:40 final size:41
Alignment explanation
Indices: 65242927--65243014 Score: 117
Period size: 40 Copynumber: 2.2 Consensus size: 41
65242917 GGCTGTCACA
* * *
65242927 TAGTGCC-TTATATAGCCGAAGCTATGCCAACTTGCACACT
1 TAGTGCCATTATATAGCCGAAGCTATACCAAATCGCACACT
**
65242967 TAGTGCCATT-TATAGCCGAAGCTATATTAAATCGCACACT
1 TAGTGCCATTATATAGCCGAAGCTATACCAAATCGCACACT
65243007 TAGTGCCA
1 TAGTGCCA
65243015 ATCATAGTCG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
40 40 0.95
41 2 0.05
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (41 bp):
TAGTGCCATTATATAGCCGAAGCTATACCAAATCGCACACT
Found at i:65256789 original size:43 final size:43
Alignment explanation
Indices: 65256699--65256839 Score: 142
Period size: 43 Copynumber: 3.3 Consensus size: 43
65256689 TCTTCCATGT
* * * * *
65256699 AATCAAATATCGATGCCACTGTCCCAGACAAGGTCTTATACCGA
1 AATCATATATCGATGCCAATGTCCCAGATATGGTCTTACA-CGA
*
65256743 AATCATATA-CGATGCCAATGTCCCAGATATGGTCTTACATGTA
1 AATCATATATCGATGCCAATGTCCCAGATATGGTCTTACACG-A
* * * *
65256786 AATC-TCAAATCGATGCCAACGTCCTAGATGTGGTCTTACACGA
1 AATCAT-ATATCGATGCCAATGTCCCAGATATGGTCTTACACGA
*
65256829 AATCACATATC
1 AATCATATATC
65256840 AAAATCCTGT
Statistics
Matches: 80, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
42 2 0.03
43 42 0.52
44 36 0.45
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
AATCATATATCGATGCCAATGTCCCAGATATGGTCTTACACGA
Found at i:65263449 original size:27 final size:27
Alignment explanation
Indices: 65263411--65263467 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
65263401 TTTTATTTGT
*
65263411 TACCCAATCTTAGCCGAACCTAACACA
1 TACCCAAGCTTAGCCGAACCTAACACA
65263438 TACCCAAGCTTAGCCGAACCTAACACA
1 TACCCAAGCTTAGCCGAACCTAACACA
65263465 TAC
1 TAC
65263468 TCATATTAGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.37, C:0.37, G:0.09, T:0.18
Consensus pattern (27 bp):
TACCCAAGCTTAGCCGAACCTAACACA
Found at i:65267385 original size:29 final size:29
Alignment explanation
Indices: 65267284--65267377 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
65267274 GTGACGAGAT
65267284 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
65267313 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
65267342 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
65267371 CGGCACT
1 TGGCACT
65267378 GGGTGTGCGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:65267402 original size:58 final size:58
Alignment explanation
Indices: 65267280--65267414 Score: 175
Period size: 58 Copynumber: 2.3 Consensus size: 58
65267270 TACGGTGACG
* *
65267280 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
65267337 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
65267395 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
65267415 GGGCTTAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 3 0.04
58 63 0.94
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:65267483 original size:2 final size:2
Alignment explanation
Indices: 65267478--65267504 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
65267468 GTGCGTACTC
65267478 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
65267505 CTCCGATCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:65275254 original size:29 final size:29
Alignment explanation
Indices: 65275124--65275246 Score: 237
Period size: 29 Copynumber: 4.2 Consensus size: 29
65275114 GTGACGAGAT
65275124 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
65275153 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
65275182 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
65275211 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
65275240 CGGCACT
1 TGGCACT
65275247 GGGTGTGCGA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 93 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:65275271 original size:58 final size:58
Alignment explanation
Indices: 65275125--65275283 Score: 212
Period size: 58 Copynumber: 2.7 Consensus size: 58
65275115 TGACGAGATT
* * *
65275125 GGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTCGAAAGATATGGCACTAAGTGTGCATGCTGGAAATATAC
* *
65275183 GGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATAC
1 GGCACTAAGTGTGCATGCTCGAAAGATATGGCACTAAGTGTGCATGCTGGAAATATAC
** * * *
65275241 GGCACTGGGTGTGCGA-GCTCGAAGGGTATGGCACTATGTGTGC
1 GGCACTAAGTGTGC-ATGCTCGAAAGATATGGCACTAAGTGTGC
65275284 GGGCTTAAAT
Statistics
Matches: 92, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
58 91 0.99
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (58 bp):
GGCACTAAGTGTGCATGCTCGAAAGATATGGCACTAAGTGTGCATGCTGGAAATATAC
Found at i:65275271 original size:87 final size:87
Alignment explanation
Indices: 65275124--65275283 Score: 232
Period size: 87 Copynumber: 1.8 Consensus size: 87
65275114 GTGACGAGAT
* * *
65275124 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
65275189 AAGTGTGCATGCTGGAAATATA
66 AAGTGTGCATGCTGGAAATATA
** * *
65275211 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAAAGATATGGCAC
*
65275275 TATGTGTGC
65 TAAGTGTGC
65275284 GGGCTTAAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
87 63 0.98
88 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
AAGTGTGCATGCTGGAAATATA
Found at i:65275301 original size:87 final size:87
Alignment explanation
Indices: 65275124--65275312 Score: 229
Period size: 87 Copynumber: 2.2 Consensus size: 87
65275114 GTGACGAGAT
* * *
65275124 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
* *
65275189 AAGTGTGCATGCTGGAAATATA
66 AAGTGTGCAGGCTGGAAATACA
** * *
65275211 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAAAGATATGGCAC
* * * *
65275275 TATGTGTGCGGGCT-TAAATCGCA
65 TAAGTGTGCAGGCTGGAAAT-ACA
65275298 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
65275313 GAAATCGAGT
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
86 4 0.05
87 82 0.94
88 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
AAGTGTGCAGGCTGGAAATACA
Found at i:65275352 original size:2 final size:2
Alignment explanation
Indices: 65275347--65275373 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
65275337 GTGCGTACTC
65275347 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
65275374 CTCCGATCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:65277282 original size:30 final size:30
Alignment explanation
Indices: 65277241--65277305 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
65277231 ATCCCTTTTA
* *
65277241 ACATAAGGGGTGCTTTTTGCGGTGAGAGGT
1 ACATGAGGGGTGCTTTTCGCGGTGAGAGGT
65277271 ACATGAGGGGTGCTTTTCGCGGTGAGAGGT
1 ACATGAGGGGTGCTTTTCGCGGTGAGAGGT
65277301 ACATG
1 ACATG
65277306 TTGTTCTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.20, C:0.12, G:0.40, T:0.28
Consensus pattern (30 bp):
ACATGAGGGGTGCTTTTCGCGGTGAGAGGT
Found at i:65278649 original size:2 final size:2
Alignment explanation
Indices: 65278612--65278638 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
65278602 ATCTTTAACT
65278612 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
65278639 TAACCATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:65278866 original size:26 final size:30
Alignment explanation
Indices: 65278837--65278890 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
65278827 TAAACAGAGA
65278837 TTCAAAT-AA-ATA-CTT-GAAATAAAAAT
1 TTCAAATCAATATATCTTAGAAATAAAAAT
*
65278863 TTCAAGTCAATATATCTTAGAAATAAAA
1 TTCAAATCAATATATCTTAGAAATAAAA
65278891 TCATCATAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 6 0.26
27 2 0.09
28 3 0.13
29 3 0.13
30 9 0.39
ACGTcount: A:0.54, C:0.09, G:0.06, T:0.31
Consensus pattern (30 bp):
TTCAAATCAATATATCTTAGAAATAAAAAT
Found at i:65280202 original size:39 final size:39
Alignment explanation
Indices: 65280152--65280238 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
65280142 GACTTAATCT
*
65280152 CTAGCAGGCCTCATACCGGTGATAAGTTTAGGTTTATAC
1 CTAGCAGGCCTCATACCGGTGATAAGTTCAGGTTTATAC
* *
65280191 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCATACCGGTGATAAGTTCAGGTTTATAC
65280230 CTAGCAGGC
1 CTAGCAGGC
65280239 TAATTGCCGG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (39 bp):
CTAGCAGGCCTCATACCGGTGATAAGTTCAGGTTTATAC
Found at i:65280247 original size:39 final size:39
Alignment explanation
Indices: 65280152--65280251 Score: 132
Period size: 39 Copynumber: 2.6 Consensus size: 39
65280142 GACTTAATCT
* *
65280152 CTAGCAGGCCTCA-TACCGGTGATAAGTTTAGGTTTATAC
1 CTAGCAGGCCT-AGTGCCGGTGATAAGTTCAGGTTTATAC
*
65280191 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTAGTGCCGGTGATAAGTTCAGGTTTATAC
*
65280230 CTAGCAGG-CTAATTGCCGGTGA
1 CTAGCAGGCCT-AGTGCCGGTGA
65280252 AATAATAAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.04
39 52 0.96
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (39 bp):
CTAGCAGGCCTAGTGCCGGTGATAAGTTCAGGTTTATAC
Found at i:65287035 original size:39 final size:39
Alignment explanation
Indices: 65286975--65287139 Score: 276
Period size: 39 Copynumber: 4.2 Consensus size: 39
65286965 AACTTAATAT
* *
65286975 CTAGTAGGCCTCGTGCTGATGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGATGATAAGTTCAGGTTTATAC
65287014 CTAGCAGGCCTCGTGCCGATGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGATGATAAGTTCAGGTTTATAC
* *
65287053 CTAGCAGGCCTCGTACCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGATGATAAGTTCAGGTTTATAC
* *
65287092 CTAGCAGGCCTTGTGCCAATGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGATGATAAGTTCAGGTTTATAC
65287131 CTAGCAGGC
1 CTAGCAGGC
65287140 TAATTGCCGG
Statistics
Matches: 118, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 118 1.00
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (39 bp):
CTAGCAGGCCTCGTGCCGATGATAAGTTCAGGTTTATAC
Found at i:65287640 original size:38 final size:38
Alignment explanation
Indices: 65287590--65287666 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
65287580 ATAAGTTTTG
65287590 TTGTTTAAAATACTTAAGACTTACTAAGCTTAATTGCT
1 TTGTTTAAAATACTTAAGACTTACTAAGCTTAATTGCT
65287628 TTGTTTAAAATACTTAAGACTTACTAAGCTTAATTGCT
1 TTGTTTAAAATACTTAAGACTTACTAAGCTTAATTGCT
65287666 T
1 T
65287667 ACTGTGAATG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (38 bp):
TTGTTTAAAATACTTAAGACTTACTAAGCTTAATTGCT
Found at i:65290132 original size:40 final size:40
Alignment explanation
Indices: 65290088--65290275 Score: 290
Period size: 40 Copynumber: 4.7 Consensus size: 40
65290078 GCTACTTGCT
*
65290088 CAAATGCCTTCGGGACTTAGCCCAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
65290128 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
65290168 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
** * *
65290208 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
65290247 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
65290276 CATCCGAATA
Statistics
Matches: 136, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
38 3 0.02
39 32 0.24
40 99 0.73
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:65300301 original size:13 final size:13
Alignment explanation
Indices: 65300283--65300314 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
65300273 CGCACGCGGG
65300283 CGTGTCACACGGA
1 CGTGTCACACGGA
*
65300296 CGTGTCACACGGG
1 CGTGTCACACGGA
65300309 CGTGTC
1 CGTGTC
65300315 CCTGTCGAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (13 bp):
CGTGTCACACGGA
Found at i:65303522 original size:59 final size:58
Alignment explanation
Indices: 65303421--65303552 Score: 237
Period size: 59 Copynumber: 2.3 Consensus size: 58
65303411 AAAATTGTAC
*
65303421 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAAAGCACTAAGTGTGCGAGCTGAAAATATAT
*
65303479 AGCACTAAGTGTGCGAGCTGAAAATTATAAAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATAAAGCACTAAGTGTGCGAGCTGAAAATATAT
65303538 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
65303553 GATTCACTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 23 0.32
59 48 0.68
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.23
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATAAAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:65303541 original size:88 final size:89
Alignment explanation
Indices: 65303391--65303552 Score: 263
Period size: 88 Copynumber: 1.8 Consensus size: 89
65303381 GACAAGATTG
* * * *
65303391 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATAAAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
65303456 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
* *
65303480 GCACTAAGTGTGCGAG-CTGAAAATTATAAAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATAAAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
65303544 AAGTGTGCG
66 AAGTGTGCG
65303553 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 52 0.78
89 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATAAAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAGCTGAAAATATATA
Found at i:65303564 original size:29 final size:29
Alignment explanation
Indices: 65303421--65303552 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
65303411 AAAATTGTAC
*
65303421 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
65303450 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
*
65303479 AGCACTAAGTGTGCGAGCTGAAAATTATAA
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
65303509 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
65303538 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
65303553 GATTCACTAT
Statistics
Matches: 99, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
29 71 0.72
30 28 0.28
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.23
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:65315623 original size:40 final size:40
Alignment explanation
Indices: 65315549--65315694 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
65315539 CCGCACCAAG
* * * * * *
65315549 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
65315589 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
65315629 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
65315669 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
65315695 TTTCCAGCAT
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:65315709 original size:40 final size:40
Alignment explanation
Indices: 65315581--65315732 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
65315571 ATCACGATTT
* * * **
65315581 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
65315621 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * * *
65315661 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * *
65315701 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
65315733 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.02
40 91 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
Found at i:65318018 original size:2 final size:2
Alignment explanation
Indices: 65318011--65318035 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
65318001 TCGATCGGAG
65318011 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
65318036 GAGTACGCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:65318160 original size:29 final size:29
Alignment explanation
Indices: 65318128--65318191 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
65318118 CTTCGAGCTC
*
65318128 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
65318157 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
65318186 GCACAC
1 GCACAC
65318192 TTAGTGCTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.27, C:0.33, G:0.16, T:0.25
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:65318192 original size:29 final size:29
Alignment explanation
Indices: 65318136--65318198 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
65318126 TCGCACACCC
*
65318136 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
65318165 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
65318194 AGTGC
1 AGTGC
65318199 TAATCTCGTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:65325218 original size:29 final size:29
Alignment explanation
Indices: 65325186--65325258 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
65325176 CTTCGAGCTC
*
65325186 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
65325215 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
65325244 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
65325259 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:65328340 original size:29 final size:29
Alignment explanation
Indices: 65328306--65328408 Score: 82
Period size: 29 Copynumber: 3.6 Consensus size: 29
65328296 TACTCGATTT
* * *
65328306 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
65328335 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* *
65328364 CGCACACTTAGTGCCATA-CATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* *
65328393 TGCACACTTAATGCCA
1 CGCACACTTAGTGCCA
65328409 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
28 1 0.02
29 57 0.98
ACGTcount: A:0.26, C:0.35, G:0.17, T:0.22
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:65335267 original size:29 final size:29
Alignment explanation
Indices: 65335235--65335307 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
65335225 CTTCGAGCTC
*
65335235 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
65335264 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
65335293 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
65335308 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:65344965 original size:22 final size:23
Alignment explanation
Indices: 65344923--65344965 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
65344913 GAATGGCTTT
* *
65344923 TTGACTTAAAATTTATTGAATAC
1 TTGAATTAAAATTGATTGAATAC
65344946 TTGAATTAAAA-TGATTGAAT
1 TTGAATTAAAATTGATTGAAT
65344966 TATACATTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.42, C:0.05, G:0.12, T:0.42
Consensus pattern (23 bp):
TTGAATTAAAATTGATTGAATAC
Found at i:65346180 original size:39 final size:39
Alignment explanation
Indices: 65346127--65346250 Score: 167
Period size: 39 Copynumber: 3.2 Consensus size: 39
65346117 GGACTTTAGC
* * ** *
65346127 CCGGACATATTTCCAGCATGTAGCCTGCGGAGCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
* *
65346166 CCGGTTATAATTCCATCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
* *
65346205 CCAGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
65346244 CCGGATA
1 CCGGATA
65346251 AACATCACTG
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
Found at i:65352332 original size:53 final size:53
Alignment explanation
Indices: 65352248--65352456 Score: 222
Period size: 53 Copynumber: 3.9 Consensus size: 53
65352238 TTTTCTTTTT
* * * * *
65352248 TGAACTTACCATTGCCATGTCTTGTCTTGGTCTTACATGGTATCCTTGCCTTA
1 TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA
* **
65352301 TGAACTCACCAATGCCATGTCTTGCCATGGTCTTACATGGGA-CCTTTGCCTTA
1 TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGATATCC-TTGCCTTA
* * * * *
65352354 TAGTAACTCATCAATGCCATTTTTTGACATGGTCTTACATGATTTCCTTGCCTTGT
1 T-G-AACTCACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTT-A
* * * *
65352410 TGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTT
65352457 ATCTTACCAA
Statistics
Matches: 132, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
52 2 0.02
53 46 0.35
54 40 0.30
55 41 0.31
56 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (53 bp):
TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA
Found at i:65352490 original size:47 final size:47
Alignment explanation
Indices: 65352435--65352556 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
65352425 CATGCCTTGG
* * *
65352435 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCAAGTTCCAAA
*
65352482 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGTCAAGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCAAGTTCCAAA
*
65352529 CATTGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
65352557 GTGCCAATTC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCAAGTTCCAAA
Found at i:65352634 original size:47 final size:47
Alignment explanation
Indices: 65352571--65352692 Score: 151
Period size: 45 Copynumber: 2.6 Consensus size: 47
65352561 CAATTCCACA
* * *
65352571 TCTTGATATGGTCTTACATGGAGTCCTTAATCAATGCCGATGCCATG
1 TCTTGACATGGTCTTACATGGAGTCCTTAAGCAATGCCAATGCCATG
** *
65352618 TCTTGACATGGTCTTACACTGGA-TCCTT--GCCTTTCCAATGCCATG
1 TCTTGACATGGTCTTACA-TGGAGTCCTTAAGCAATGCCAATGCCATG
*
65352663 TCTTGACATGGTCTTACATGGTGTCCTTAA
1 TCTTGACATGGTCTTACATGGAGTCCTTAA
65352693 CCATCAATTC
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
44 3 0.05
45 35 0.55
47 22 0.34
48 4 0.06
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (47 bp):
TCTTGACATGGTCTTACATGGAGTCCTTAAGCAATGCCAATGCCATG
Found at i:65355694 original size:38 final size:38
Alignment explanation
Indices: 65355652--65355744 Score: 114
Period size: 38 Copynumber: 2.4 Consensus size: 38
65355642 TAAAGACCCA
* * * *
65355652 CAGGCTTCGTGTTGGTAAAATATTCGGGTTAAATCCCG
1 CAGGCTTCGTGCTGGTAAAATATCCAGGATAAATCCCG
**
65355690 CAGGCTTCGTGCTGGTATTATATCCAGGATAAATCCCG
1 CAGGCTTCGTGCTGGTAAAATATCCAGGATAAATCCCG
* *
65355728 CAGGCCTCGTGCCGGTA
1 CAGGCTTCGTGCTGGTA
65355745 TTAGTTTCGG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.28
Consensus pattern (38 bp):
CAGGCTTCGTGCTGGTAAAATATCCAGGATAAATCCCG
Found at i:65355802 original size:43 final size:43
Alignment explanation
Indices: 65355727--65355859 Score: 175
Period size: 43 Copynumber: 3.1 Consensus size: 43
65355717 GATAAATCCC
* *
65355727 GCAGGCCTCGTGCCGGT-AT-TAGT-TTCGGGCCTTCCTGCCTA
1 GCAGGCTTCGTGCCGGTGATGT-GTATTCGGGCCTTCATGCCTA
65355768 -CTAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCATGCCTA
1 GC-AGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCATGCCTA
* * *
65355811 GCAGGCTTCGTGCCGGTGATGTGTATTCTGGCCTTCGTACCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCATGCCTA
65355854 GCAGGC
1 GCAGGC
65355860 GTAATGCCGG
Statistics
Matches: 82, Mismatches: 5, Indels: 8
0.86 0.05 0.08
Matches are distributed among these distances:
40 1 0.01
41 14 0.17
42 4 0.05
43 62 0.76
44 1 0.01
ACGTcount: A:0.11, C:0.28, G:0.31, T:0.30
Consensus pattern (43 bp):
GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCATGCCTA
Found at i:65355868 original size:43 final size:43
Alignment explanation
Indices: 65355778--65355872 Score: 136
Period size: 43 Copynumber: 2.2 Consensus size: 43
65355768 CTAGGCTTCG
* * **
65355778 TGCCGGTGATGTGTATTCGGGCCTTCATGCCTAGCAGGCTTCG
1 TGCCGGTGATGTGTATTCGGGCCTTCATACCTAGCAGGCGTAA
* *
65355821 TGCCGGTGATGTGTATTCTGGCCTTCGTACCTAGCAGGCGTAA
1 TGCCGGTGATGTGTATTCGGGCCTTCATACCTAGCAGGCGTAA
65355864 TGCCGGTGA
1 TGCCGGTGA
65355873 AATGATATGT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.14, C:0.24, G:0.33, T:0.29
Consensus pattern (43 bp):
TGCCGGTGATGTGTATTCGGGCCTTCATACCTAGCAGGCGTAA
Found at i:65357483 original size:48 final size:48
Alignment explanation
Indices: 65357389--65357492 Score: 122
Period size: 48 Copynumber: 2.2 Consensus size: 48
65357379 TGTGCTAAGC
* * *
65357389 GTAAGACCTATCTGGGATAGGCATCGGCACAGCCCAGTGAGTGCTAGT
1 GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
**
65357437 GTAAGACCTATC-GGGAATAGGCATCAGCAC-GGGCAGAGCAGAGCTAGT
1 GTAAGACCTATCTGGG-ATAGGCATCAGCACAGCCCAGAG-AGAGCTAGT
*
65357485 ATAAGACC
1 GTAAGACC
65357493 ATAGTTGGAC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
47 8 0.17
48 40 0.83
ACGTcount: A:0.30, C:0.22, G:0.31, T:0.17
Consensus pattern (48 bp):
GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
Found at i:65361126 original size:38 final size:38
Alignment explanation
Indices: 65361051--65361146 Score: 102
Period size: 38 Copynumber: 2.5 Consensus size: 38
65361041 GGCTTAAAGA
** *
65361051 CCTGCAGGCTTCGTGCTGGTAAAATATATGGGTTAAAT
1 CCTGCAGGCTTCGTGCTGGTAAAATATACAGGATAAAT
* ** *
65361089 TCTGCAGGCTTCGTGCTGGTATTATATCCAGGATAAAT
1 CCTGCAGGCTTCGTGCTGGTAAAATATACAGGATAAAT
* * *
65361127 CCCGCAGGCCTAGTGCTGGT
1 CCTGCAGGCTTCGTGCTGGT
65361147 GTTTTATTCG
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (38 bp):
CCTGCAGGCTTCGTGCTGGTAAAATATACAGGATAAAT
Found at i:65362613 original size:40 final size:40
Alignment explanation
Indices: 65362568--65362698 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
65362558 CGGAATATAA
*
65362568 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * * *
65362608 CCGGATAGATTAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
65362648 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
65362688 CCGGATATAAT
1 CCGGATATAAT
65362699 TTCCAGCATA
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:65363581 original size:17 final size:19
Alignment explanation
Indices: 65363558--65363603 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
65363548 AAGAAGCATG
65363558 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
65363576 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
65363594 AATCATGCTC
1 AATCATGCTC
65363604 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:65364534 original size:43 final size:43
Alignment explanation
Indices: 65364420--65364519 Score: 182
Period size: 43 Copynumber: 2.3 Consensus size: 43
65364410 GGGTGTCACA
*
65364420 TTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTTAGGCC
1 TTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCAGGCC
*
65364463 TTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCC
1 TTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCAGGCC
65364506 TTCGTGCCTAGCAG
1 TTCGTGCCTAGCAG
65364520 CCGTAATGCC
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.11, C:0.25, G:0.33, T:0.31
Consensus pattern (43 bp):
TTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCAGGCC
Found at i:65371660 original size:55 final size:53
Alignment explanation
Indices: 65371534--65371719 Score: 230
Period size: 55 Copynumber: 3.5 Consensus size: 53
65371524 GTACCATTGT
* * * * *
65371534 CATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAATGT
1 CATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTTATCAATGC
* *
65371587 CATGCCTTGCCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTTATCAATGC
1 CATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTTATCAATGC
* * *
65371642 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGC
1 CATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTTATCAATGC
*
65371696 CATGCCTTGGCATGGTCTTACATG
1 CATGCCTTGACATGGTCTTACATG
65371720 ATATCCTTAT
Statistics
Matches: 115, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
52 2 0.02
53 32 0.28
54 36 0.31
55 43 0.37
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (53 bp):
CATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTTATCAATGC
Found at i:65371711 original size:54 final size:54
Alignment explanation
Indices: 65371534--65371727 Score: 248
Period size: 54 Copynumber: 3.6 Consensus size: 54
65371524 GTACCATTGT
* * * * * *
65371534 CATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAATGT
1 CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTTATCAATGC
* **
65371587 CATGCCTTGCCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATGC
1 CATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTTATCAATGC
* *
65371642 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGC
1 CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTTATCAATGC
*
65371696 CATGCCTTGGCATGGTCTTACATGATATCCTT
1 CATGCCTTGACATGGTCTTACATGATATCCTT
65371728 ATCTTACCAA
Statistics
Matches: 122, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
52 2 0.02
53 32 0.26
54 43 0.35
55 43 0.35
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.37
Consensus pattern (54 bp):
CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTTATCAATGC
Found at i:65371761 original size:47 final size:47
Alignment explanation
Indices: 65371706--65371827 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
65371696 CATGCCTTGG
*
65371706 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
65371753 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
*
65371800 AATGGTCTTACATGGTATCCTTATCTTA
1 CATGGTCTTACATGGTATCCTTATCTTA
65371828 GTGCCAATGC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:65371903 original size:47 final size:48
Alignment explanation
Indices: 65371801--65371918 Score: 132
Period size: 47 Copynumber: 2.5 Consensus size: 48
65371791 TGTTCCAAAA
* *
65371801 ATGGTCTTACATGGTATCCTT-ATCTTAGTGCCAATGCCACATCTTGAT
1 ATGGTCTTACATGGTATCCTTAATC-TAATGCCAATGCCACATCTTGAC
* * ** **
65371849 GTGGTCTTACATGGAATCCTTAATC-AATGCTGATGCCATGTCTTGAC
1 ATGGTCTTACATGGTATCCTTAATCTAATGCCAATGCCACATCTTGAC
*
65371896 ATGGTCTTACATGGTGTCCTTAA
1 ATGGTCTTACATGGTATCCTTAA
65371919 CCGTCAATTC
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
47 36 0.62
48 19 0.33
49 3 0.05
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.36
Consensus pattern (48 bp):
ATGGTCTTACATGGTATCCTTAATCTAATGCCAATGCCACATCTTGAC
Found at i:65374182 original size:40 final size:40
Alignment explanation
Indices: 65374122--65374365 Score: 296
Period size: 40 Copynumber: 6.1 Consensus size: 40
65374112 TGAATGATAC
* ** *
65374122 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
*
65374162 CCGGACTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
*
65374202 CTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
*
65374242 CCGGACTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
* *** *
65374282 CCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
* ** *
65374322 CCGGGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
65374362 CCGG
1 CCGG
65374366 TTAAATCCCG
Statistics
Matches: 179, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
40 174 0.97
41 5 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
Found at i:65374944 original size:16 final size:16
Alignment explanation
Indices: 65374923--65374957 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
65374913 GGCATTAGAC
65374923 TATTTGTGTTTATGTA
1 TATTTGTGTTTATGTA
65374939 TATTTGTGTTTATGTA
1 TATTTGTGTTTATGTA
65374955 TAT
1 TAT
65374958 ATGTATGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.17, T:0.63
Consensus pattern (16 bp):
TATTTGTGTTTATGTA
Found at i:65382416 original size:40 final size:40
Alignment explanation
Indices: 65382356--65382599 Score: 287
Period size: 40 Copynumber: 6.1 Consensus size: 40
65382346 TGAATGATAC
* ** *
65382356 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
* *
65382396 CCGGACTAAGACCTGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
*
65382436 CCAGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
*
65382476 CCGGACTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
* *** *
65382516 CCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
* ** *
65382556 CCGGGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
65382596 CCGG
1 CCGG
65382600 TTAAATCCCG
Statistics
Matches: 177, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
40 172 0.97
41 5 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
Found at i:65386404 original size:6 final size:6
Alignment explanation
Indices: 65386393--65386426 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
65386383 AGGATTGCAA
* *
65386393 ATTTCC ATTTCC ATTTCC ATTTAC ATTACC ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
65386427 TTAGAAACCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.00, T:0.50
Consensus pattern (6 bp):
ATTTCC
Found at i:65386837 original size:20 final size:21
Alignment explanation
Indices: 65386812--65386854 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
65386802 ATAATATTCG
65386812 TTCT-CCAATATGATTCTATT
1 TTCTCCCAATATGATTCTATT
65386832 TTCTCCCAATATGATTCTATT
1 TTCTCCCAATATGATTCTATT
65386853 TT
1 TT
65386855 ATCTTATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.23, C:0.21, G:0.05, T:0.51
Consensus pattern (21 bp):
TTCTCCCAATATGATTCTATT
Found at i:65396120 original size:40 final size:40
Alignment explanation
Indices: 65396076--65396229 Score: 156
Period size: 40 Copynumber: 3.9 Consensus size: 40
65396066 CGGTTATAAT
*
65396076 AACTCTCACAAATGCCTTCGGGA-CTTAACCCGGATTTGGG
1 AACTCTCACAAATGCCTTC-GGATCTTAGCCCGGATTTGGG
* *
65396116 AACTCGT-ACAAATGCCTTCGGATCTTAGTCCGAATTTGGG
1 AACTC-TCACAAATGCCTTCGGATCTTAGCCCGGATTTGGG
* * * *
65396156 AACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGT
1 AACTCTCACAAATGCCTTCGGATCTTAGCCCGGATTTGGG
*
65396196 CACT-TAGCACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 AACTCT--CACAAATGCCTTC-GGATCTTAGCCCGGA
65396230 CATCATTTGA
Statistics
Matches: 98, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
39 3 0.03
40 85 0.87
41 10 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
AACTCTCACAAATGCCTTCGGATCTTAGCCCGGATTTGGG
Found at i:65398668 original size:20 final size:20
Alignment explanation
Indices: 65398639--65398684 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
65398629 GTTGGGCCTT
*
65398639 AATGGGCTGGAATTGGGCCC
1 AATGGCCTGGAATTGGGCCC
65398659 AATGGCCTGGAATTGGGCCC
1 AATGGCCTGGAATTGGGCCC
65398679 AATGGC
1 AATGGC
65398685 TTTCGGGCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.22, C:0.22, G:0.37, T:0.20
Consensus pattern (20 bp):
AATGGCCTGGAATTGGGCCC
Found at i:65399068 original size:11 final size:11
Alignment explanation
Indices: 65399045--65399094 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
65399035 TTGTTGTACG
65399045 TGATATG-ACA
1 TGATATGCACA
65399055 TGATATGCACA
1 TGATATGCACA
**
65399066 TGATATG-TTA
1 TGATATGCACA
*
65399076 TGAGATGCACA
1 TGATATGCACA
*
65399087 CGATATGC
1 TGATATGC
65399095 TATGATATAC
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
10 14 0.45
11 17 0.55
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (11 bp):
TGATATGCACA
Found at i:65399069 original size:21 final size:20
Alignment explanation
Indices: 65399045--65399102 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
65399035 TTGTTGTACG
65399045 TGATATGACATGATATGCACA
1 TGATATG-CATGATATGCACA
* *
65399066 TGATATGTTATGAGATGCACA
1 TGATATG-CATGATATGCACA
*
65399087 CGATATGCTATGATAT
1 TGATATGC-ATGATAT
65399103 ACTCATTGTA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
TGATATGCATGATATGCACA
Found at i:65411116 original size:40 final size:39
Alignment explanation
Indices: 65411072--65411224 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 39
65411062 AAGTGACTAT
* *
65411072 ATCCGGACTAAGATCCGAAGGCGTTCGTGCGAGTTAATAA
1 ATCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAA
* * * *
65411112 ATCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAA
1 ATCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAA
* * *
65411151 ACCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA
1 ATCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-A
** * *
65411192 A-CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 ATCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
65411225 CGTTATATCC
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.34
40 61 0.64
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAA
Found at i:65411172 original size:79 final size:82
Alignment explanation
Indices: 65411033--65411217 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
65411023 TTGAATGATG
* * * *
65411033 TCCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTCAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
65411097 CGTGCGAGTTAATA-AA
66 CGTGCGAGTTAATATAA
* **
65411113 TCCGGGCTAAG-CCCGAAGGCATTTGTG-CAAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTCAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
65411175 TCGTGCGAGTTACTATAA
65 TCGTGCGAGTTAATATAA
**
65411193 -CCGGGCTTTGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
65411218 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGTCAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTAATATAA
Found at i:65411239 original size:79 final size:78
Alignment explanation
Indices: 65411033--65411240 Score: 197
Period size: 79 Copynumber: 2.6 Consensus size: 78
65411023 TTGAATGATG
* * * * *
65411033 TCCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAG-CAAGTCACTATATCCGG-TTAAGATCCGAAGGCATT
65411097 CGTGCGAGTTAATAAA
63 CGTGCGAGTTAATAAA
* * * *
65411113 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTATATCC-GGTTAAGAT-CCGAAGGCATTC
*
65411177 GTGCGAGTTACTATAA
64 GTGCGAGTTAATA-AA
** * **
65411193 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGTCGTTATATCCGGTTAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTATATCCGGTTAA
65411241 ATTACGAAGG
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
78 1 0.01
79 61 0.57
80 45 0.42
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTATATCCGGTTAAGATCCGAAGGCATTCGT
GCGAGTTAATAAA
Found at i:65420934 original size:93 final size:93
Alignment explanation
Indices: 65420775--65420945 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
65420765 GTCCCTAAGT
* * *
65420775 GAACTCGGACTCAACTTAACGAGTTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
65420840 CGAGTTCGGATGCGTAGTTACATCTCAC
66 CGAGTTCGGATGCGTAGTTACATCTCAC
* *
65420868 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
65420933 CGAGTTCGGATGC
66 CGAGTTCGGATGC
65420946 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCGTAGTTACATCTCAC
Found at i:65420942 original size:46 final size:46
Alignment explanation
Indices: 65420770--65420942 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
65420760 AACCCGTCCC
* * * *
65420770 TAAGTGAACTCGGACTCAACTTAACGAGTTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
65420816 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCGTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--C--ATTTGCATCCA
* *
65420864 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
65420909 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
65420943 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 3 0.03
46 60 0.56
47 29 0.27
48 3 0.03
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:65428325 original size:93 final size:93
Alignment explanation
Indices: 65428215--65428385 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
65428205 GCCCCTAAGT
***
65428215 GAACTCGGACTCAACTCAACAAGCTCGGGTGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
65428280 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
65428308 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
65428373 CGAGTTCGGATGC
66 CGAGTTCGGATGC
65428386 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:65428375 original size:46 final size:46
Alignment explanation
Indices: 65428210--65428382 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
65428200 AACCCGCCCC
* * *** *
65428210 TAAGTGAACTCGGACTCAACTCAACAAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
65428256 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
65428304 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
65428349 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
65428383 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.56
47 29 0.28
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:65438488 original size:40 final size:40
Alignment explanation
Indices: 65438375--65438659 Score: 448
Period size: 40 Copynumber: 7.2 Consensus size: 40
65438365 AACCCAAGTA
* **
65438375 CCTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
65438414 CCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
65438453 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
65438493 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
65438533 CCTTCGGGACTTAACCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
65438573 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
65438613 CCTTCGAGACTTAACCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
65438653 CCTTCGG
1 CCTTCGG
65438660 ATCTTAGTCC
Statistics
Matches: 230, Mismatches: 14, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 50 0.22
40 180 0.78
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:65442946 original size:2 final size:2
Alignment explanation
Indices: 65442939--65442963 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
65442929 GAGACTAGTC
65442939 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
65442964 CATGTCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:65448519 original size:38 final size:38
Alignment explanation
Indices: 65448468--65448669 Score: 278
Period size: 38 Copynumber: 5.3 Consensus size: 38
65448458 ATATTCGATG
65448468 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
65448506 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
65448544 TATATTCGGGCTTAAAGACCCACAGGCTTCGTGCTGGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
* *
65448584 AATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
65448622 TATAACCGGGATAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
65448660 TATATTCGGG
1 TATATCCGGG
65448670 CCTTCGTGCC
Statistics
Matches: 144, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
38 105 0.73
39 10 0.07
40 29 0.20
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:65448577 original size:78 final size:76
Alignment explanation
Indices: 65448468--65448669 Score: 242
Period size: 78 Copynumber: 2.6 Consensus size: 76
65448458 ATATTCGATG
* * * * *
65448468 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCACAGGCTT
1 TATAACCGGGATAAAACCCACAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCACAAGCTT
65448533 CGTGCTGGTAT
66 CGTGCTGGTAT
** * ** *
65448544 TATATTCGGGCTTAAAGACCCACAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAAGC
1 TATAACCGGG-ATAAA-ACCCACAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCACAAGC
65448609 TTCGTGCTGGTAT
64 TTCGTGCTGGTAT
* * * * *
65448622 TATAACCGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 TATAACCGGGATAAAACCCACAGGCTTCGTGCTGGTATTATATCCGGG
65448670 CCTTCGTGCC
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
76 35 0.33
77 9 0.08
78 63 0.59
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (76 bp):
TATAACCGGGATAAAACCCACAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCACAAGCTT
CGTGCTGGTAT
Found at i:65448786 original size:43 final size:43
Alignment explanation
Indices: 65448662--65448773 Score: 206
Period size: 43 Copynumber: 2.6 Consensus size: 43
65448652 GCTGGTATTA
65448662 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
65448705 TATTTGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
65448748 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
65448774 GTAATGCCGG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.11, C:0.26, G:0.33, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:65449170 original size:45 final size:42
Alignment explanation
Indices: 65449103--65449210 Score: 128
Period size: 45 Copynumber: 2.5 Consensus size: 42
65449093 TTGACTTGAT
* *
65449103 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
**
65449148 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
65449190 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
65449211 ACAAGTGAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 34 0.60
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:65457515 original size:39 final size:39
Alignment explanation
Indices: 65457461--65457537 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
65457451 GTTAGAATTA
*
65457461 GTGTACCGGTGAATATAAATGGTTTTGTTTTAAAACTAT
1 GTGTACCAGTGAATATAAATGGTTTTGTTTTAAAACTAT
65457500 GTGTACCAGTGAATATAAATGGTTTTGTTTTAAAACTA
1 GTGTACCAGTGAATATAAATGGTTTTGTTTTAAAACTA
65457538 GTACTAAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (39 bp):
GTGTACCAGTGAATATAAATGGTTTTGTTTTAAAACTAT
Found at i:65457890 original size:8 final size:8
Alignment explanation
Indices: 65457877--65457990 Score: 75
Period size: 9 Copynumber: 13.1 Consensus size: 8
65457867 ATTAGTTATT
65457877 TTTAAAAA
1 TTTAAAAA
65457885 TTTAAAAA
1 TTTAAAAA
65457893 TTTTAAAAA
1 -TTTAAAAA
65457902 TTTAAAAA
1 TTTAAAAA
65457910 TTTCATAAAA
1 TTT-A-AAAA
*
65457920 TTGATAAAA
1 TTTA-AAAA
****
65457929 TTTATTTT
1 TTTAAAAA
65457937 TTTAAAAA
1 TTTAAAAA
*
65457945 TTAAAAAAA
1 TT-TAAAAA
65457954 TATTAAAATTA
1 T-TTAAAA--A
65457965 TTTAAAAA
1 TTTAAAAA
* *
65457973 GTAAAAAA
1 TTTAAAAA
65457981 TTATAAAAA
1 TT-TAAAAA
65457990 T
1 T
65457991 ATATATGTTT
Statistics
Matches: 82, Mismatches: 16, Indels: 15
0.73 0.14 0.13
Matches are distributed among these distances:
8 33 0.40
9 34 0.41
10 13 0.16
11 2 0.02
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.39
Consensus pattern (8 bp):
TTTAAAAA
Found at i:65457897 original size:9 final size:9
Alignment explanation
Indices: 65457876--65457912 Score: 60
Period size: 8 Copynumber: 4.3 Consensus size: 9
65457866 AATTAGTTAT
65457876 TTTTAAAAA
1 TTTTAAAAA
65457885 -TTTAAAAA
1 TTTTAAAAA
65457893 TTTTAAAAA
1 TTTTAAAAA
65457902 -TTTAAAAA
1 TTTTAAAAA
65457910 TTT
1 TTT
65457913 CATAAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 16 0.62
9 10 0.38
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:65457971 original size:28 final size:28
Alignment explanation
Indices: 65457937--65457990 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
65457927 AATTTATTTT
* *
65457937 TTTAAAAATTAAAAAAATATTAAAATTA
1 TTTAAAAAGTAAAAAAATATAAAAATTA
*
65457965 TTTAAAAAGTAAAAAATTATAAAAAT
1 TTTAAAAAGTAAAAAAATATAAAAAT
65457991 ATATATGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (28 bp):
TTTAAAAAGTAAAAAAATATAAAAATTA
Found at i:65460852 original size:3 final size:3
Alignment explanation
Indices: 65460832--65460897 Score: 116
Period size: 3 Copynumber: 22.3 Consensus size: 3
65460822 GCCGCTTACA
*
65460832 AAG AA- AAG AAG AAT AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
65460879 AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG A
65460898 GTTTAATCTA
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
2 2 0.03
3 58 0.97
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (3 bp):
AAG
Found at i:65463028 original size:40 final size:40
Alignment explanation
Indices: 65462980--65463111 Score: 180
Period size: 40 Copynumber: 3.3 Consensus size: 40
65462970 ACGACTAGCT
*
65462980 CAAATGCCTTCGGGAC-AAACCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCCGGTT-TAGTAACTCGCA
* *
65463020 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCCGGTTTAGTAACTCGCA
* *
65463060 CAAATGCCTTCGGG-CTTAA-CCCGGATTTATTAACCCGCA
1 CAAATGCCTTCGGGACTTAACCCCGG-TTTAGTAACTCGCA
65463099 CAAATGCCTTCGG
1 CAAATGCCTTCGG
65463112 ATCTTAGTCC
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
38 4 0.05
39 30 0.36
40 40 0.48
41 9 0.11
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCCGGTTTAGTAACTCGCA
Found at i:65466508 original size:12 final size:12
Alignment explanation
Indices: 65466488--65466520 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
65466478 CTAGACACAC
*
65466488 ACCCGTGTGCCT
1 ACCCATGTGCCT
65466500 ACCCATGTGCCT
1 ACCCATGTGCCT
65466512 ACCCATGTG
1 ACCCATGTG
65466521 GACAATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.39, G:0.21, T:0.24
Consensus pattern (12 bp):
ACCCATGTGCCT
Found at i:65467297 original size:46 final size:47
Alignment explanation
Indices: 65467206--65467334 Score: 156
Period size: 46 Copynumber: 2.7 Consensus size: 47
65467196 AGGGTAAGGT
*
65467206 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTA-
1 GCCGATGCC-TGTCCCAGACAT-GTCTTACACTGGCTTATCATCTCG-AG
* * * *
65467254 GCTGATGCCTGTCCTAGACATGTCTTACATTGGCTTA-CGTCTCGAG
1 GCCGATGCCTGTCCCAGACATGTCTTACACTGGCTTATCATCTCGAG
*
65467300 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT
1 GCCGATGCCTGTCCCAGACATGTCTTACACTGGCT
65467335 CACACACGAA
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
45 1 0.01
46 48 0.69
47 13 0.19
48 8 0.11
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (47 bp):
GCCGATGCCTGTCCCAGACATGTCTTACACTGGCTTATCATCTCGAG
Found at i:65470451 original size:36 final size:36
Alignment explanation
Indices: 65470404--65470473 Score: 140
Period size: 36 Copynumber: 1.9 Consensus size: 36
65470394 ATAAGAACGC
65470404 ACCCCAAAATCAAGGTGGCGTCGCTATATATCACGT
1 ACCCCAAAATCAAGGTGGCGTCGCTATATATCACGT
65470440 ACCCCAAAATCAAGGTGGCGTCGCTATATATCAC
1 ACCCCAAAATCAAGGTGGCGTCGCTATATATCAC
65470474 AAACTCCTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (36 bp):
ACCCCAAAATCAAGGTGGCGTCGCTATATATCACGT
Found at i:65473283 original size:46 final size:46
Alignment explanation
Indices: 65473216--65473390 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
65473206 TGTAACCCGC
* *
65473216 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* * *
65473262 CCATAAGGGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCAT
* * * * *
65473312 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
65473355 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
65473391 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 2 0.02
46 62 0.58
47 28 0.26
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Done.