Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 214 of 410
Found at i:65473333 original size:93 final size:93
Alignment explanation
Indices: 65473224--65473394 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
65473214 GCCCATAAGT
* * *
65473224 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGGGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGGGAACTCGGACTCAACTCAA
65473289 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
65473317 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGGGAACTCGGACTCAACTCAA
65473382 CGAGTTCGGATGC
66 CGAGTTCGGATGC
65473395 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGGGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:65473846 original size:30 final size:30
Alignment explanation
Indices: 65473812--65473871 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
65473802 ATTTAATACG
65473812 AACTTTAACAAAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
** *
65473842 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
65473872 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAACAAAATTACACTTTTGCCCCTA
Found at i:65478544 original size:93 final size:93
Alignment explanation
Indices: 65478435--65478605 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
65478425 CGCCCATAAG
* * * * *
65478435 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAACTGAACTCGGACTCAACTCA
65478500 ACGAGTTCGGATGACTAGTTACATTTCA
66 ACGAGTTCGGATGACTAGTTACATTTCA
* * *
65478528 TGAACTCGAACTCAACTCAACGAGTTCGGACATTCGTATCCATAACTGAACTTGGACTCAACTCA
1 TGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAACTGAACTCGGACTCAACTCA
65478593 ACGAGTTCGGATG
66 ACGAGTTCGGATG
65478606 CTTAACCATC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (93 bp):
TGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAACTGAACTCGGACTCAACTCA
ACGAGTTCGGATGACTAGTTACATTTCA
Found at i:65478603 original size:46 final size:46
Alignment explanation
Indices: 65478428--65478603 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
65478418 TGTAACCCGC
* * * * * *
65478428 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAACTGAACTCGGACTCAACTCAACGAGTTCGGACATTAGTAT
* * *
65478474 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGACTAGT-T
1 CCATAACTGAACTCGGACTCAACTCAACGAGTTCGGA-CATTAGTAT
* ** * *
65478520 ACATTTCATGAACTCGAACTCAACTCAACGAGTTCGGACATTCGTAT
1 CCATAAC-TGAACTCGGACTCAACTCAACGAGTTCGGACATTAGTAT
*
65478567 CCATAACTGAACTTGGACTCAACTCAACGAGTTCGGA
1 CCATAACTGAACTCGGACTCAACTCAACGAGTTCGGA
65478604 TGCTTAACCA
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 71 0.66
47 36 0.34
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (46 bp):
CCATAACTGAACTCGGACTCAACTCAACGAGTTCGGACATTAGTAT
Found at i:65479058 original size:30 final size:30
Alignment explanation
Indices: 65479024--65479083 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
65479014 ATTTAATACG
65479024 AACTTTAACAAAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
** *
65479054 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
65479084 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAACAAAATTACACTTTTGCCCCTA
Found at i:65479927 original size:15 final size:15
Alignment explanation
Indices: 65479907--65479936 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
65479897 TCAGGGATTT
65479907 TCGTCCCCGAAAATC
1 TCGTCCCCGAAAATC
65479922 TCGTCCCCGAAAATC
1 TCGTCCCCGAAAATC
65479937 CAGAAAAGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.40, G:0.13, T:0.20
Consensus pattern (15 bp):
TCGTCCCCGAAAATC
Found at i:65483760 original size:46 final size:46
Alignment explanation
Indices: 65483693--65483866 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
65483683 TGTAACCCGC
* *
65483693 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* *
65483739 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCAT
* * * * *
65483789 --TTCA-CGAACTC-GACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
65483831 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
65483867 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
42 5 0.05
43 1 0.01
44 2 0.02
45 6 0.06
46 77 0.73
47 6 0.06
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:65483812 original size:92 final size:93
Alignment explanation
Indices: 65483701--65483870 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
65483691 GCCCATAAGT
* * *
65483701 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65483766 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
65483794 GAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65483858 CGAGTTCGGATGC
66 CGAGTTCGGATGC
65483871 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 67 0.92
93 6 0.08
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:65484321 original size:30 final size:30
Alignment explanation
Indices: 65484287--65484346 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
65484277 ATTTAATACG
65484287 AACTTTAACAAAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
** *
65484317 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
65484347 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAACAAAATTACACTTTTGCCCCTA
Found at i:65489062 original size:93 final size:93
Alignment explanation
Indices: 65488955--65489125 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
65488945 GCCCATAAGT
* *
65488955 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
65489020 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
65489048 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
65489113 CGAGTTCGGATGC
66 CGAGTTCGGATGC
65489126 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:65489122 original size:46 final size:46
Alignment explanation
Indices: 65488947--65489122 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
65488937 TGTAACCCGC
* * *
65488947 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
65488993 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * *
65489043 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
65489086 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
65489123 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 6 0.05
44 1 0.01
45 2 0.02
46 64 0.58
47 29 0.26
48 2 0.02
49 1 0.01
50 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:65489577 original size:30 final size:30
Alignment explanation
Indices: 65489543--65489602 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
65489533 ATTTAATACG
65489543 AACTTTAACAAAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
** *
65489573 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
65489603 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAACAAAATTACACTTTTGCCCCTA
Found at i:65494348 original size:46 final size:49
Alignment explanation
Indices: 65494221--65494355 Score: 167
Period size: 46 Copynumber: 2.9 Consensus size: 49
65494211 CGAGCTCGGG
65494221 CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT
1 CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTT
* * * *
65494272 -ACAT--TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A-TT
1 CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT
65494314 CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
65494356 TGCTCAACCA
Statistics
Matches: 72, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 1 0.01
45 2 0.03
46 29 0.40
47 29 0.40
48 2 0.03
50 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (49 bp):
CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT
Found at i:65494374 original size:46 final size:43
Alignment explanation
Indices: 65494200--65494366 Score: 144
Period size: 46 Copynumber: 3.7 Consensus size: 43
65494190 TCAAGTGCTC
* * *
65494200 ACTCAACTCAACGAGCTCGG--GCGCATCCATAAGTGAACTCGG
1 ACTCAACTCAACGAGTTCGGATGC-CAACCATTAGTGAACTCGG
*
65494242 ACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTTCA-CGAACTCGG
1 ACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TT-AGTGAACTCGG
* * *
65494289 ACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGG
1 ACTCAACTCAACGAGTTCGG--ATGC-CAACCATTAGTGAACTCGG
65494335 ACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 ACTCAACTCAACGAGTTCGGATGC-CAACCAT
65494367 CCTAGTGACA
Statistics
Matches: 101, Mismatches: 11, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
42 19 0.19
43 1 0.01
44 12 0.12
45 1 0.01
46 31 0.31
47 31 0.31
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (43 bp):
ACTCAACTCAACGAGTTCGGATGCCAACCATTAGTGAACTCGG
Found at i:65494810 original size:30 final size:30
Alignment explanation
Indices: 65494776--65494835 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
65494766 ATTTAATACG
65494776 AACTTTAACAAAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
** *
65494806 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
65494836 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAACAAAATTACACTTTTGCCCCTA
Found at i:65499509 original size:46 final size:46
Alignment explanation
Indices: 65499442--65499615 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
65499432 TGTAACCCGC
* *
65499442 CCATAAGTGAACTCGGACTCAACTCAACCAGCTCGGGCTTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTTTGCAT
* * *
65499488 CCATAATTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-CT-TTTGCAT
* * * * * *
65499538 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTTTGCAT
*
65499581 CCATAAGTGAACTCGGACTGAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
65499616 AATGCTCAAC
Statistics
Matches: 104, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 2 0.02
46 59 0.57
47 28 0.27
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTTTGCAT
Found at i:65499560 original size:93 final size:93
Alignment explanation
Indices: 65499450--65499620 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
65499440 GCCCATAAGT
* * * *
65499450 GAACTCGGACTCAACTCAACCAGCTCGGGCTTTTGCATCCATAATTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACCAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
65499515 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGAATGCCTAGTTACATTTCAC
* * *
65499543 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTGAACTCAA
1 GAACTCGGACTCAACTCAACCAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65499608 CGAGTTCGAATGC
66 CGAGTTCGAATGC
65499621 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACCAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATTTCAC
Found at i:65500072 original size:30 final size:30
Alignment explanation
Indices: 65500038--65500097 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
65500028 ATTTAATACG
65500038 AACTTTAACAAAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
** *
65500068 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
65500098 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAACAAAATTACACTTTTGCCCCTA
Found at i:65503031 original size:22 final size:21
Alignment explanation
Indices: 65502991--65503031 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
65502981 CACTTGACAC
*
65502991 AGGGGCACACGCTCATGTGGG
1 AGGGGCACACGCCCATGTGGG
*
65503012 AGGGGCAACACGCCCGTGTG
1 AGGGGC-ACACGCCCATGTG
65503032 AGCATTCCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.20, C:0.27, G:0.41, T:0.12
Consensus pattern (21 bp):
AGGGGCACACGCCCATGTGGG
Found at i:65508225 original size:24 final size:23
Alignment explanation
Indices: 65508192--65508244 Score: 79
Period size: 24 Copynumber: 2.3 Consensus size: 23
65508182 ATGTATTGGC
* *
65508192 AAAAGCCGAAATGCCGAAAAGCT
1 AAAAGTCGAAATGCCAAAAAGCT
65508215 GAAAAGTCGAAATGCCAAAAAGCT
1 -AAAAGTCGAAATGCCAAAAAGCT
65508239 AAAAGT
1 AAAAGT
65508245 TTGGCTACAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.51, C:0.17, G:0.21, T:0.11
Consensus pattern (23 bp):
AAAAGTCGAAATGCCAAAAAGCT
Found at i:65508455 original size:29 final size:29
Alignment explanation
Indices: 65508398--65508536 Score: 139
Period size: 29 Copynumber: 5.0 Consensus size: 29
65508388 TGGGCCCATA
* *
65508398 ATATGAATGTGA--TGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
65508425 ATATAAATGTGATTTGGGCCTAATGGACC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
65508454 ATATACA---G-TTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
65508479 ATATATAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * * *
65508508 ATATGAATATGA-TTGGGCTTAATCGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
65508536 A
1 A
65508537 GATATAGGTA
Statistics
Matches: 94, Mismatches: 12, Indels: 11
0.80 0.10 0.09
Matches are distributed among these distances:
25 22 0.23
26 1 0.01
27 11 0.12
28 16 0.17
29 44 0.47
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:65510530 original size:3 final size:3
Alignment explanation
Indices: 65510522--65510560 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
65510512 TCAAAAAACA
65510522 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
65510561 CCGTTGTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:65513082 original size:40 final size:39
Alignment explanation
Indices: 65513038--65513146 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 39
65513028 TTCACAATTT
* *
65513038 GCACAAATGCCTTCAGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTC-GGTCTTAGCCCGGATGTAATCACCA
* * *
65513078 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTC-GGTCTTAGCCCGGATGTAATCACCA
* * *
65513118 GCATAAATGTCTTCGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGTCTTAGCCCGGAT
65513147 ATCATTCAAT
Statistics
Matches: 58, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
39 13 0.22
40 45 0.78
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (39 bp):
GCACAAATGCCTTCGGTCTTAGCCCGGATGTAATCACCA
Found at i:65520138 original size:48 final size:47
Alignment explanation
Indices: 65520077--65520300 Score: 145
Period size: 48 Copynumber: 4.8 Consensus size: 47
65520067 ATATGCGATC
*
65520077 CCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCAATATGTAATT
1 CCATGTAAGACCATGTCTGGGACATGGC-TTGGCATCAATATGTAATA
* * * *
65520125 TCGTGTAAGACCATAGT-TGGG-CTAT--C--GGCATCGATATGTGATA
1 CCATGTAAGACCAT-GTCTGGGAC-ATGGCTTGGCATCAATATGTAATA
* * * *** *
65520168 CCAAGTAAGACCATGTCTGGGACATGGCATTGGCATCGATCTACGATC
1 CCATGTAAGACCATGTCTGGGACATGGC-TTGGCATCAATATGTAATA
* * * * * *
65520216 CCATGTAAGACTATGTCTGGGACATGGCATTGGAATCGATAGGTGATC
1 CCATGTAAGACCATGTCTGGGACATGGC-TTGGCATCAATATGTAATA
* * * * *
65520264 CCATGTAAGAACATATCCGGGATATGGCATTAGCATC
1 CCATGTAAGACCATGTCTGGGACATGGC-TTGGCATC
65520301 CTACCATGTG
Statistics
Matches: 141, Mismatches: 26, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
42 2 0.01
43 31 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 102 0.72
49 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (47 bp):
CCATGTAAGACCATGTCTGGGACATGGCTTGGCATCAATATGTAATA
Found at i:65523911 original size:44 final size:43
Alignment explanation
Indices: 65523849--65523933 Score: 143
Period size: 44 Copynumber: 2.0 Consensus size: 43
65523839 CCTTGTAGTC
65523849 AAAGCTACATTCTTCACAAAATGGCCTTCACATAGTACCACCA
1 AAAGCTACATTCTTCACAAAATGGCCTTCACATAGTACCACCA
* *
65523892 AAAGCTATCTTTCTTCACAAAGTGGCCTTCACATAGTACCAC
1 AAAGCTA-CATTCTTCACAAAATGGCCTTCACATAGTACCAC
65523934 ACTTGAGTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 7 0.18
44 32 0.82
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.26
Consensus pattern (43 bp):
AAAGCTACATTCTTCACAAAATGGCCTTCACATAGTACCACCA
Found at i:65527178 original size:29 final size:29
Alignment explanation
Indices: 65527145--65527246 Score: 177
Period size: 29 Copynumber: 3.5 Consensus size: 29
65527135 GTGACGAGAT
*
65527145 TGGCATTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
65527174 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
65527203 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
65527232 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
65527247 GAGCTCGAAG
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 68 1.00
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:65527263 original size:58 final size:59
Alignment explanation
Indices: 65527153--65527306 Score: 188
Period size: 58 Copynumber: 2.6 Consensus size: 59
65527143 ATTGGCATTA
*
65527153 AGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC-ATGCTGGAAAAATATGGCACTG
1 AGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTG
***
65527211 AGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCACTG
1 AGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTG
* ** * **
65527269 TGTGTGCGGGCT-TAAATCGCATGGCACTAAGTGTGCGA
1 AGTGTGCATGCTGGAAAT-ATATGGCACTAAGTGTGCGA
65527307 AATCGAGTAT
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
57 4 0.05
58 79 0.94
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (59 bp):
AGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTG
Found at i:65536586 original size:51 final size:49
Alignment explanation
Indices: 65536504--65536678 Score: 201
Period size: 52 Copynumber: 3.5 Consensus size: 49
65536494 ATACCTGCTA
* * *
65536504 GCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAAGT
1 GCCTTCACATAGTACCACACTTGTA-CCAAAGCTACCTTCTTCACAAAGT
* *
65536554 GACGTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAAGTT
1 G-CCTTCACATAGTACCACACTTGT-ACCAAAGCTA-CCTTCTTCACAAAG-T
* * *
65536607 GCCTTCATATAGTACCACACTTGTAACC-AAGCTATC-TCTTCTCAAAGT
1 GCCTTCACATAGTACCACACTTGT-ACCAAAGCTACCTTCTTCACAAAGT
65536655 GGCCTTCACATAGTACCACACTTG
1 -GCCTTCACATAGTACCACACTTG
65536679 AGTCACTAGT
Statistics
Matches: 108, Mismatches: 12, Indels: 11
0.82 0.09 0.08
Matches are distributed among these distances:
48 1 0.01
49 32 0.30
50 1 0.01
51 34 0.31
52 38 0.35
53 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.13, T:0.29
Consensus pattern (49 bp):
GCCTTCACATAGTACCACACTTGTACCAAAGCTACCTTCTTCACAAAGT
Found at i:65536619 original size:52 final size:50
Alignment explanation
Indices: 65536504--65536678 Score: 212
Period size: 51 Copynumber: 3.5 Consensus size: 50
65536494 ATACCTGCTA
* * * *
65536504 GCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAAG-T
1 GCCTTCACATAGTACCACACTTGTA-CCAAAGCTATCTTCTTCACAAAGTT
*
65536554 GACGTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAAGTT
1 G-CCTTCACATAGTACCACACTTGT-ACCAAAGCTATC-TTCTTCACAAAGTT
* * *
65536607 GCCTTCATATAGTACCACACTTGTAACC-AAGCTATC-TCTTCTCAAAGTG
1 GCCTTCACATAGTACCACACTTGT-ACCAAAGCTATCTTCTTCACAAAGTT
65536656 GCCTTCACATAGTACCACACTTG
1 GCCTTCACATAGTACCACACTTG
65536679 AGTCACTAGT
Statistics
Matches: 110, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
49 33 0.30
50 1 0.01
51 37 0.34
52 37 0.34
53 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.13, T:0.29
Consensus pattern (50 bp):
GCCTTCACATAGTACCACACTTGTACCAAAGCTATCTTCTTCACAAAGTT
Found at i:65539312 original size:15 final size:15
Alignment explanation
Indices: 65539289--65539318 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
65539279 TCAAAAATTC
65539289 TAATACAAAACATAT
1 TAATACAAAACATAT
*
65539304 TAATTCAAAACATAT
1 TAATACAAAACATAT
65539319 CTTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:65543831 original size:40 final size:39
Alignment explanation
Indices: 65543786--65543914 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
65543776 CGGAATATAA
65543786 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
65543826 CCGGATAGAATCTC-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
** * * *
65543864 CCGGATATAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
65543904 CCGGATATAAT
1 CCGGATATAAT
65543915 TTCCAGCATA
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
38 33 0.45
40 41 0.55
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:65543928 original size:40 final size:40
Alignment explanation
Indices: 65543786--65543951 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
65543776 CGGAATATAA
* ** *
65543786 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
*
65543826 CCGGATAGAATCT-C-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCTCCAGCAC-AATTGCCTTCGGGTCTTAGC
** * * * *
65543864 CCGGATATAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
* * *
65543904 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGG-TCTTAGC
65543944 CCGGATAT
1 CCGGATAT
65543952 CATTCAATTT
Statistics
Matches: 102, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
38 30 0.29
39 4 0.04
40 67 0.66
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:65553266 original size:15 final size:16
Alignment explanation
Indices: 65553239--65553271 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
65553229 ACTCCAAAAG
65553239 GATGTTAAGTTCGAAT
1 GATGTTAAGTTCGAAT
65553255 GATGTT-AGTTCGAAT
1 GATGTTAAGTTCGAAT
65553270 GA
1 GA
65553272 CGGAAAATGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.36
Consensus pattern (16 bp):
GATGTTAAGTTCGAAT
Found at i:65556960 original size:40 final size:40
Alignment explanation
Indices: 65556894--65557060 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
65556884 AAATTGAATG
* * *
65556894 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
65556933 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
65556973 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
65557013 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
65557053 ATATCCGG
1 ATATCCGG
65557061 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:65562865 original size:34 final size:34
Alignment explanation
Indices: 65562822--65562891 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
65562812 GTCGTTGCCT
65562822 AAGAACTTTCACTAAAGCTATGTTTTTATTTCTC
1 AAGAACTTTCACTAAAGCTATGTTTTTATTTCTC
65562856 AAGAACTTTCACTAAAGCTATGTTTTTATTTCTC
1 AAGAACTTTCACTAAAGCTATGTTTTTATTTCTC
65562890 AA
1 AA
65562892 TTCTTTGACC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.31, C:0.17, G:0.09, T:0.43
Consensus pattern (34 bp):
AAGAACTTTCACTAAAGCTATGTTTTTATTTCTC
Found at i:65564160 original size:28 final size:27
Alignment explanation
Indices: 65564129--65564212 Score: 72
Period size: 28 Copynumber: 3.2 Consensus size: 27
65564119 AACTTTGATC
65564129 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGT-CAGGCTACT
* * *
65564157 ACGTGTATCAG-A-T-GGTTAGG-T-C-
1 ACGTGTGT-AGTACTAAGTCAGGCTACT
65564179 ACGTGTGTAGTACTAAGTCCAGGCTACT
1 ACGTGTGTAGTACTAAGT-CAGGCTACT
65564207 ACGTGT
1 ACGTGT
65564213 ACTGGAGAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.30
Consensus pattern (27 bp):
ACGTGTGTAGTACTAAGTCAGGCTACT
Found at i:65564202 original size:50 final size:51
Alignment explanation
Indices: 65564073--65564256 Score: 214
Period size: 50 Copynumber: 3.7 Consensus size: 51
65564063 ATCTATTGTG
* * *
65564073 AGGTCAAGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTCGATAACTT
* * **
65564124 TGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGAT-GGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTC-GATAACTT
* * *
65564174 AGGTCACGTGTGTAGTACTAAGTCCAGGCTACTACGTGTACTGGAGAA-TT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTCGATAACTT
* * *
65564224 -GGTCGCATGTGTAGTACTAAGTGAAGGCTACTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
65564257 TGCGTACCAG
Statistics
Matches: 113, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
49 29 0.26
50 45 0.40
51 39 0.35
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (51 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTCGATAACTT
Found at i:65567717 original size:38 final size:38
Alignment explanation
Indices: 65567656--65567768 Score: 127
Period size: 38 Copynumber: 2.9 Consensus size: 38
65567646 ACCTGATGTG
* *
65567656 TATCCGGGCTTAAAGACCCGCAGGGTTCGTGCTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
**
65567696 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
* * * * *
65567734 TATCTGGGATAAATCCTGCAGGCCTAGTGCTGGTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
65567769 TTATATTTGG
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 51 0.80
39 5 0.08
40 8 0.12
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
Found at i:65567769 original size:38 final size:38
Alignment explanation
Indices: 65567684--65567779 Score: 120
Period size: 38 Copynumber: 2.5 Consensus size: 38
65567674 CGCAGGGTTC
** * * * *
65567684 GTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGCTTC
1 GTGCTGGTATTATATCTGGGATAAATCCCGCAGGCCTA
*
65567722 GTGCTGGTATTATATCTGGGATAAATCCTGCAGGCCTA
1 GTGCTGGTATTATATCTGGGATAAATCCCGCAGGCCTA
*
65567760 GTGCTGGTATTATATTTGGG
1 GTGCTGGTATTATATCTGGG
65567780 CCTTCATGCC
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (38 bp):
GTGCTGGTATTATATCTGGGATAAATCCCGCAGGCCTA
Found at i:65567825 original size:43 final size:43
Alignment explanation
Indices: 65567772--65567883 Score: 188
Period size: 43 Copynumber: 2.6 Consensus size: 43
65567762 GCTGGTATTA
* *
65567772 TATTTGGGCCTTCATGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
65567815 TATTCGGGCCTTTGTGCCGAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
65567858 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
65567884 GTAATGCCAG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.11, C:0.25, G:0.34, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:65569506 original size:48 final size:48
Alignment explanation
Indices: 65569412--65569515 Score: 122
Period size: 48 Copynumber: 2.2 Consensus size: 48
65569402 TATGCTAAGC
* * *
65569412 GTAAGACCTATCTGGGATAGGCATCGGCACAGCCCAGTGAGTGCTAGT
1 GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
**
65569460 GTAAGACCTATC-GGGAATAGGCATCAGCAC-GGGCAGAGCAGAGCTAGT
1 GTAAGACCTATCTGGG-ATAGGCATCAGCACAGCCCAGAG-AGAGCTAGT
*
65569508 ATAAGACC
1 GTAAGACC
65569516 ATAGTTGGAC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
47 8 0.17
48 40 0.83
ACGTcount: A:0.30, C:0.22, G:0.31, T:0.17
Consensus pattern (48 bp):
GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
Found at i:65571281 original size:93 final size:93
Alignment explanation
Indices: 65571169--65571341 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
65571159 CGCCCATAAG
* * *
65571169 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACCCGGACTCAACTCA
65571234 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
65571262 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACCCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACCCGGACTCAACTCA
65571327 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
65571342 CAAATATCCC
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACCCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:65571337 original size:46 final size:46
Alignment explanation
Indices: 65571162--65571337 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
65571152 TGTAACCCGC
* * *
65571162 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* * *
65571208 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
*
65571258 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
65571301 CCATAAGTGAACCCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
65571338 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 66 0.60
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.31, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:65571356 original size:46 final size:45
Alignment explanation
Indices: 65571213--65571356 Score: 139
Period size: 46 Copynumber: 3.1 Consensus size: 45
65571203 CGCATCCATA
* *
65571213 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
65571261 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
* *
65571306 AGTGAACCCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
65571352 AGTGA
1 AGTGA
65571357 CATGTCACTT
Statistics
Matches: 77, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 36 0.47
47 31 0.40
48 5 0.06
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:65573716 original size:79 final size:80
Alignment explanation
Indices: 65573597--65573780 Score: 176
Period size: 79 Copynumber: 2.3 Consensus size: 80
65573587 GCTACTCGTT
* * * * *
65573597 CAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCACCAAGGCCTACGGGACTTAACCCGG
1 CAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCACCAAGGCCTACGGGACTTAACCCAG
* *
65573662 ATATCA-CGA-TTGCA
66 ATAT-AGCCACTAGCA
* * * * * * *
65573676 CAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCGCACGAATGCCTTCGGGTCTTAGCCCA
1 CAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCGCACCAAGGCCTACGGGACTTAACCCA
65573740 GATATAGCCACTAGCA
65 GATATAGCCACTAGCA
* * *
65573756 CCATTGCCTTCGGGTCTTAACCCGG
1 CAAATGCCTTCGGGTCTTAGCCCGG
65573781 TTATAATTTC
Statistics
Matches: 85, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
78 2 0.02
79 57 0.67
80 26 0.31
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.21
Consensus pattern (80 bp):
CAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCACCAAGGCCTACGGGACTTAACCCAG
ATATAGCCACTAGCA
Found at i:65573725 original size:40 final size:40
Alignment explanation
Indices: 65573673--65573780 Score: 126
Period size: 40 Copynumber: 2.7 Consensus size: 40
65573663 TATCACGATT
** *
65573673 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * * *
65573713 GCACGAATGCCTTCGGGTCTTAGCCCAGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
65573753 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
65573781 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.22, C:0.31, G:0.24, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:65577636 original size:39 final size:39
Alignment explanation
Indices: 65577609--65577767 Score: 246
Period size: 39 Copynumber: 4.1 Consensus size: 39
65577599 TGTCCAGCAC
*
65577609 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
65577648 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
* *
65577687 ATAGCCTGCGGACATGAAGTCCGGATATAATTCTCGCGT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
** * * *
65577726 ATAGCCTAAGGACCTGAAGTCTGGATATAATTCTCGCAT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
65577765 ATA
1 ATA
65577768 TATATTCACA
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (39 bp):
ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
Found at i:65580533 original size:39 final size:39
Alignment explanation
Indices: 65580479--65580674 Score: 277
Period size: 39 Copynumber: 5.0 Consensus size: 39
65580469 GATGTGTATG
* *
65580479 AATGTGCAAATTGTGATGTCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
*
65580518 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGTA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
65580557 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
* * * *
65580596 ATTGTGCTAGA-TATGATATCCGGGCTAAGCCCGAAGGCG
1 AATGTGCGA-ATTGTGATATCCGGGCTAAGCCCGAAGGCA
* * *
65580635 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCA
65580675 TTTGTGCGGG
Statistics
Matches: 141, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 131 0.93
40 10 0.07
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (39 bp):
AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
Found at i:65580613 original size:78 final size:78
Alignment explanation
Indices: 65580479--65580713 Score: 292
Period size: 78 Copynumber: 3.0 Consensus size: 78
65580469 GATGTGTATG
* * * *
65580479 AATGTGCAAATTGTGATGTCCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATATCCGGGCT
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTATGATATCCGGGCT
*
65580544 AAGCCCGAAGGTA
66 AAGCCCGAAGGCA
*
65580557 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCTAGA-TATGATATCCGGGC
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGA-ATTATGATATCCGGGC
*
65580621 TAAGCCCGAAGGCG
65 TAAGCCCGAAGGCA
* * * * ** * *
65580635 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTATCATAACCGGGC
1 AATGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAATTATGATATCCGGGC
*
65580700 TATGTCCCGAAGGC
65 TAAG-CCCGAAGGC
65580714 GTTTGAACGA
Statistics
Matches: 136, Mismatches: 17, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
78 95 0.70
79 32 0.24
80 9 0.07
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (78 bp):
AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTATGATATCCGGGCT
AAGCCCGAAGGCA
Found at i:65580740 original size:79 final size:78
Alignment explanation
Indices: 65580491--65580751 Score: 222
Period size: 78 Copynumber: 3.3 Consensus size: 78
65580481 TGTGCAAATT
* * * * * *
65580491 GTGATGTCCGGGCTAAGCCCGAAGGCAAATGTGCGA-ATTGTGATATCCGGGCTAAGCCCGAAGG
1 GTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGA-TATCATAACCGGGCTAAGCCCGAAGG
** * ** * *
65580555 TAAATGTGCGAATT
65 CGATTGAACGAGTA
* * * *
65580569 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCTAGATATGATATCCGGGCTAAGCCCGAAGGC
1 GTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGATATCATAACCGGGCTAAGCCCGAAGGC
** *
65580634 GATTGTGCGAGTT
66 GATTGAACGAGTA
* * * *
65580647 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTATCATAACCGGGCTATGTCCCGAAG
1 GTGATATCCGGGTTAAG-CCCGAAGGCAATTGTGCGAGATATCATAACCGGGCTAAG-CCCGAAG
*
65580712 GCGTTTGAACGAGTA
64 GCGATTGAACGAGTA
*
65580727 GCT-ATATCC-GGTTAAACTCCGAAGG
1 G-TGATATCCGGGTTAAGC-CCGAAGG
65580752 TATGTAATTT
Statistics
Matches: 157, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
78 85 0.54
79 46 0.29
80 25 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (78 bp):
GTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGATATCATAACCGGGCTAAGCCCGAAGGC
GATTGAACGAGTA
Found at i:65585391 original size:38 final size:38
Alignment explanation
Indices: 65585344--65585447 Score: 120
Period size: 38 Copynumber: 2.7 Consensus size: 38
65585334 TAAAGACCCG
*
65585344 CAGGCTTCGTGCTGGTA-AACTATCCGGGTTAAATCCCA
1 CAGGCTTCGTGCTGGTATAA-TATCCGGGATAAATCCCA
* * *
65585382 CCGGCTTCGTGCTGGTATTATATCCGGGATAAATCCCG
1 CAGGCTTCGTGCTGGTATAATATCCGGGATAAATCCCA
* * * *
65585420 CAGGCCTAGTGCTGGTATTATATTCGGG
1 CAGGCTTCGTGCTGGTATAATATCCGGG
65585448 CCTTCGTGCC
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 56 0.98
39 1 0.02
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (38 bp):
CAGGCTTCGTGCTGGTATAATATCCGGGATAAATCCCA
Found at i:65585470 original size:16 final size:16
Alignment explanation
Indices: 65585449--65585489 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
65585439 ATATTCGGGC
65585449 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
65585465 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
65585481 CTTCGTGCC
1 CTTCGTGCC
65585490 GGTGATGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.10, C:0.34, G:0.29, T:0.27
Consensus pattern (16 bp):
CTTCGTGCCTAGCAGG
Found at i:65585526 original size:43 final size:43
Alignment explanation
Indices: 65585465--65585566 Score: 186
Period size: 43 Copynumber: 2.4 Consensus size: 43
65585455 GCCTAGCAGG
65585465 CTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGC
1 CTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGC
*
65585508 CTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTTTTCGGGC
1 CTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGC
*
65585551 CATCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
65585567 AGTAATGCCG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.10, C:0.26, G:0.34, T:0.29
Consensus pattern (43 bp):
CTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGC
Found at i:65590963 original size:8 final size:8
Alignment explanation
Indices: 65590950--65590993 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
65590940 GGCGAAAGCT
65590950 GAAATGCC
1 GAAATGCC
*
65590958 GAAATGCT
1 GAAATGCC
*
65590966 GAAAAGCC
1 GAAATGCC
*
65590974 AAAATGCC
1 GAAATGCC
*
65590982 GAAAAGCC
1 GAAATGCC
65590990 GAAA
1 GAAA
65590994 GTTGGCTATG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.48, C:0.20, G:0.23, T:0.09
Consensus pattern (8 bp):
GAAATGCC
Found at i:65590968 original size:16 final size:16
Alignment explanation
Indices: 65590942--65590993 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
65590932 TATGAATCGG
*
65590942 CGAAA-GCTGAAATGC
1 CGAAATGCTGAAAAGC
65590957 CGAAATGCTGAAAAGC
1 CGAAATGCTGAAAAGC
* *
65590973 CAAAATGCCGAAAAGC
1 CGAAATGCTGAAAAGC
65590989 CGAAA
1 CGAAA
65590994 GTTGGCTATG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
15 5 0.16
16 27 0.84
ACGTcount: A:0.46, C:0.21, G:0.23, T:0.10
Consensus pattern (16 bp):
CGAAATGCTGAAAAGC
Found at i:65591258 original size:29 final size:28
Alignment explanation
Indices: 65591203--65591326 Score: 106
Period size: 29 Copynumber: 4.4 Consensus size: 28
65591193 GTGAGCATGA
* * *
65591203 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
*
65591231 ATATAAATGTGATTTGGGTCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
65591260 ATATACAA-GTGGTTTGGGCCTAATTGGCC
1 ATATA-AATGT-GATTGGGCCTAATGGGCC
* * * *
65591289 ATATGAGTATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
* *
65591317 AGATACATGT
1 ATATAAATGT
65591327 ATGTGAATTT
Statistics
Matches: 74, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
28 32 0.43
29 39 0.53
30 3 0.04
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:65598708 original size:16 final size:16
Alignment explanation
Indices: 65598682--65598728 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
65598672 TATGAATCGG
*
65598682 CGAAA-GCTGAAATGC
1 CGAAATGCTGAAAAGC
65598697 CGAAATGCTGAAAAGC
1 CGAAATGCTGAAAAGC
*
65598713 CGAAATG-TCAAAAGC
1 CGAAATGCTGAAAAGC
65598728 C
1 C
65598729 AAAAGTTGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 13 0.45
16 16 0.55
ACGTcount: A:0.43, C:0.21, G:0.23, T:0.13
Consensus pattern (16 bp):
CGAAATGCTGAAAAGC
Found at i:65599049 original size:28 final size:29
Alignment explanation
Indices: 65598962--65599052 Score: 132
Period size: 29 Copynumber: 3.2 Consensus size: 29
65598952 TAGGCCTAGC
* *
65598962 GGGCCATATAAATGTGATTTGGGCCTAAT
1 GGGCCATATAAGTATGATTTGGGCCTAAT
65598991 GGGCCATATACAG-ATGATTTGGGCCTAAT
1 GGGCCATATA-AGTATGATTTGGGCCTAAT
*
65599020 GGGCCATATAAGTATGA-TTGGGCTTAAT
1 GGGCCATATAAGTATGATTTGGGCCTAAT
65599048 GGGCC
1 GGGCC
65599053 GGATACAGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
28 17 0.30
29 39 0.68
30 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (29 bp):
GGGCCATATAAGTATGATTTGGGCCTAAT
Found at i:65603003 original size:25 final size:25
Alignment explanation
Indices: 65602938--65603007 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
65602928 AGTTATAAAC
*
65602938 GGTAAGCTCCTCCAAGCTGAATAAT
1 GGTAAGCTCCTCCGAGCTGAATAAT
* *
65602963 GGTAAACTCCTCCGAGCTGAATAGT
1 GGTAAGCTCCTCCGAGCTGAATAAT
* *
65602988 GGTAAGCTCATACGAGCTGA
1 GGTAAGCTCCTCCGAGCTGA
65603008 GCATCGGTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (25 bp):
GGTAAGCTCCTCCGAGCTGAATAAT
Found at i:65609335 original size:30 final size:30
Alignment explanation
Indices: 65609277--65609335 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
65609267 TTTTCGAGCC
* * *
65609277 TAGGGGCCAAAGTGTAAATATGTGAAAGTT
1 TAGGGGCCAAAATGCAAATATGTAAAAGTT
* *
65609307 TAGGGGTCAAAATGCAAATTTGTAAAAGT
1 TAGGGGCCAAAATGCAAATATGTAAAAGT
65609336 ATGCTTTTTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.39, C:0.07, G:0.27, T:0.27
Consensus pattern (30 bp):
TAGGGGCCAAAATGCAAATATGTAAAAGTT
Found at i:65609592 original size:18 final size:20
Alignment explanation
Indices: 65609556--65609602 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
65609546 AGTTGTAAGT
65609556 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
65609576 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
65609595 ATGATATA
1 AT-ATATA
65609603 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:65610073 original size:50 final size:50
Alignment explanation
Indices: 65610000--65610382 Score: 287
Period size: 50 Copynumber: 7.7 Consensus size: 50
65609990 TAAGACAATT
* * *
65610000 TTAGGTCACGTGTGTAGTGCTAAGTGCAGGCTACTACATGTACCGGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
* * *** * *
65610050 TTAGGTCGCTTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
* * * * * *
65610100 TTTCGATCACATGTATAGTACTAAGTGTAGGCTACT-TAT-T---AGATGG
1 -TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
* * *
65610146 TTAGGTCACATGTGTAATACTAAGTGCAGGCTACTACGTGTACCGGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
* * * * *
65610196 ATAGGTCACATGTGTAGTACCAAGTGCAGGGTAC-A-ATGCGTACCTG-TTAAC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACAT--GTACCAGATT--G
* * * * * *
65610247 TTCGATCACGTGTGTAGTACTAAGTGCAGGCTATTACATGTATCAGATGG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
* * * * * * * * *
65610297 ATAAGTCACGTGTGTAGTACAAAGTGCAGGCTATTGCGTATACTAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
* * *
65610347 ATAGGTCACATGTATAGTACTAAGTGCAAGCTACTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
65610383 TGCGTACCAG
Statistics
Matches: 257, Mismatches: 63, Indels: 26
0.74 0.18 0.08
Matches are distributed among these distances:
45 30 0.12
46 5 0.02
47 1 0.00
48 1 0.00
49 4 0.02
50 151 0.59
51 61 0.24
52 2 0.01
53 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
Found at i:65610225 original size:146 final size:149
Alignment explanation
Indices: 65610000--65610390 Score: 491
Period size: 146 Copynumber: 2.6 Consensus size: 149
65609990 TAAGACAATT
* * * * *
65610000 TTAGGTCACGTGTGTAGTGCTAAGTGCAGGCTACTACATGTACCGGATTGTTAGGTCGCTTGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGATAGGTCACATGTGT
** *
65610065 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGATCACATGTATAGTACTAAGTGTAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACATGTATAGTACTAAGTGCAG
*
65610130 GC-TAC-T-TATTAGATGG
131 GCTTACATGTATCAGATGG
* *
65610146 TTAGGTCACATGTGTAATACTAAGTGCAGGCTACTACGTGTACCGGATTGATAGGTCACATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGATAGGTCACATGTGT
* * * * * * *
65610211 AGTACCAAGTGCAGGGTACAATGCGTACCTGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACATGTATAGTACTAAGTGCAG
65610276 GCTATTACATGTATCAGATGG
131 GC--TTACATGTATCAGATGG
* * * * * * ** *
65610297 ATAAGTCACGTGTGTAGTACAAAGTGCAGGCTATTGCGTATACTAGATTGATAGGTCACATGTAT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGATAGGTCACATGTGT
*
65610362 AGTACTAAGTGCAAGCTACTATGCGTACC
66 AGTACTAAGTGCAGGCTACTATGCGTACC
65610391 AGAGAGCTTC
Statistics
Matches: 207, Mismatches: 33, Indels: 5
0.84 0.13 0.02
Matches are distributed among these distances:
146 115 0.56
149 3 0.01
150 1 0.00
151 88 0.43
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (149 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGATAGGTCACATGTGT
AGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACATGTATAGTACTAAGTGCAG
GCTTACATGTATCAGATGG
Found at i:65610614 original size:16 final size:16
Alignment explanation
Indices: 65610593--65610624 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
65610583 AGAATGGAGT
65610593 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
65610609 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
65610625 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:65611283 original size:171 final size:171
Alignment explanation
Indices: 65610954--65611270 Score: 476
Period size: 171 Copynumber: 1.9 Consensus size: 171
65610944 TTCGAGAGCT
* * * *
65610954 GTACCATGAGATATATAATTTTTAGTGAAGAGAGGTTGGAACTGTCGGATAGTGAAACATGGGTA
1 GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTTGGAACTGTCAGACAGTGAAACATGGGTA
* ** * *
65611019 TCTTTAACGAATAAACTATACTAATTGGCTAGGCTAAAAATTCTGAAAATTTTATGGTAAACATA
66 TATTTAACGAATAAACTATACTAATTGGCTAAACCAAAAATTATGAAAATTTTATGGTAAACATA
*
65611084 TACGTAAGTCTAGTTTCTGGTAAAATTAAATTTGGAGTCCC
131 TACATAAGTCTAGTTTCTGGTAAAATTAAATTTGGAGTCCC
*
65611125 GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTTGGAACTGTCAGACAGTGAAATA-GGCGT
1 GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTTGGAACTGTCAGACAGTGAAACATGG-GT
*
65611189 ATATTTAATGAATAAACTATACTAATTGGCTAAACCAAAAATTATGAAAATTTTATGGTAAGA-A
65 ATATTTAACGAATAAACTATACTAATTGGCTAAACCAAAAATTATGAAAATTTTATGGTAA-ACA
* *
65611253 TATATATGAGTCTAGTTT
129 TATACATAAGTCTAGTTT
65611271 TAGAGAAAAT
Statistics
Matches: 130, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
170 2 0.02
171 127 0.98
172 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.32
Consensus pattern (171 bp):
GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTTGGAACTGTCAGACAGTGAAACATGGGTA
TATTTAACGAATAAACTATACTAATTGGCTAAACCAAAAATTATGAAAATTTTATGGTAAACATA
TACATAAGTCTAGTTTCTGGTAAAATTAAATTTGGAGTCCC
Found at i:65615415 original size:47 final size:47
Alignment explanation
Indices: 65615364--65615699 Score: 417
Period size: 47 Copynumber: 7.1 Consensus size: 47
65615354 TTAGGATTTT
65615364 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
* * * * *
65615411 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
*
65615458 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
65615505 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
*
65615552 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
* * * * * * *
65615599 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
65615646 ATGTGA-AATATGTATGAGATATGCATATGTG-G-TAAAGCCGAATGGTCA
1 ATGTGATGA-ATG--TGAG-CATGCATATGTGTGATAAGGCCGAATGGCCA
65615694 ATGTGA
1 ATGTGA
65615700 AATATATATA
Statistics
Matches: 250, Mismatches: 35, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
46 1 0.00
47 215 0.86
48 20 0.08
49 4 0.02
50 10 0.04
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:65615461 original size:22 final size:22
Alignment explanation
Indices: 65615436--65615509 Score: 64
Period size: 22 Copynumber: 3.2 Consensus size: 22
65615426 ACATGCATAT
65615436 ATGTGATAAGGCTGAATGGCCA
1 ATGTGATAAGGCTGAATGGCCA
*
65615458 ATGTGATGAATG-TGAGCAT-G-CA
1 ATGTGAT-AAGGCTGA--ATGGCCA
65615480 TATGTGTGATAAGGCTGAATGGCCA
1 -A--TGTGATAAGGCTGAATGGCCA
65615505 ATGTG
1 ATGTG
65615510 GTGAATATGA
Statistics
Matches: 41, Mismatches: 2, Indels: 18
0.67 0.03 0.30
Matches are distributed among these distances:
22 16 0.39
23 7 0.17
24 7 0.17
25 11 0.27
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCTGAATGGCCA
Found at i:65615462 original size:94 final size:94
Alignment explanation
Indices: 65615364--65615698 Score: 523
Period size: 94 Copynumber: 3.6 Consensus size: 94
65615354 TTAGGATTTT
65615364 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
1 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
*
65615429 TGCATATATGTGATAAGGCTGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
*
65615458 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGCCAATGTGGTGAATATGAACA
1 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
65615523 TGCATATATGTGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
*
65615552 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGACCGAATGGCCAATGTGGTGAATATGAACA
1 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
* * *
65615617 TGCATATATGTGGTAAAGCCGAATGGCTA
66 TGCATATATGTGATAAGGCCGAATGGCCA
* * * *
65615646 ATGTGA-AATATGTATGAGATATGCATATGTG-G-TAAAGCCGAATGGTCAATGTG
1 ATGTGATGA-ATG--TGAG-CATGCATATGTGTGATAAGGCCGAATGGCCAATGTG
65615699 AAATATATAT
Statistics
Matches: 225, Mismatches: 12, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
93 1 0.00
94 190 0.84
95 18 0.08
96 5 0.02
97 11 0.05
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
TGCATATATGTGATAAGGCCGAATGGCCA
Found at i:65615513 original size:25 final size:25
Alignment explanation
Indices: 65615438--65615513 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
65615428 ATGCATATAT
65615438 GTGATAAGGCTGAATGGCCAATGTG
1 GTGATAAGGCTGAATGGCCAATGTG
* *
65615463 ATG--AATG-TGAGCAT-G-CATATGT-
1 GTGATAAGGCTGA--ATGGCCA-ATGTG
65615485 GTGATAAGGCTGAATGGCCAATGTG
1 GTGATAAGGCTGAATGGCCAATGTG
65615510 GTGA
1 GTGA
65615514 ATATGAACAT
Statistics
Matches: 38, Mismatches: 4, Indels: 18
0.63 0.07 0.30
Matches are distributed among these distances:
22 7 0.18
23 10 0.26
24 10 0.26
25 11 0.29
ACGTcount: A:0.29, C:0.11, G:0.34, T:0.26
Consensus pattern (25 bp):
GTGATAAGGCTGAATGGCCAATGTG
Found at i:65615684 original size:48 final size:48
Alignment explanation
Indices: 65615622--65615757 Score: 211
Period size: 50 Copynumber: 2.8 Consensus size: 48
65615612 GAACATGCAT
65615622 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
* *
65615670 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGC
*
65615720 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
65615758 GGCGATGTGC
Statistics
Matches: 80, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
47 1 0.01
48 33 0.41
49 4 0.05
50 41 0.51
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.30
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:65615772 original size:50 final size:50
Alignment explanation
Indices: 65615616--65615773 Score: 200
Period size: 50 Copynumber: 3.2 Consensus size: 50
65615606 GAATATGAAC
*
65615616 ATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
65615666 ATGC--ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGAT
* * *
65615716 AT--GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGCGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
65615764 GTGCGTATAT
1 ATGCGTATAT
65615774 TGTGACCGAA
Statistics
Matches: 94, Mismatches: 6, Indels: 16
0.81 0.05 0.14
Matches are distributed among these distances:
47 1 0.01
48 38 0.40
49 4 0.04
50 50 0.53
51 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.30
Consensus pattern (50 bp):
ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
Found at i:65616011 original size:37 final size:37
Alignment explanation
Indices: 65615903--65616011 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
65615893 GGAAATATAT
*
65615903 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
65615940 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
65615977 TCCAGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTT
65616012 CGTTTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
TCCAGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:65619905 original size:54 final size:54
Alignment explanation
Indices: 65619846--65619959 Score: 183
Period size: 54 Copynumber: 2.1 Consensus size: 54
65619836 TTAGATTGAT
*
65619846 AAATGACTGTTTTACCCTTATATGGTAAAATGCTTATTTTCCCCTCATAAGGTA
1 AAATGACTGTTTTACCCTTATATGGTAAAATGATTATTTTCCCCTCATAAGGTA
* * * *
65619900 AAATGACTGTTTTGCCCTTATATGGTAAAATGATTGTTTTGCCCTCATGAGGTA
1 AAATGACTGTTTTACCCTTATATGGTAAAATGATTATTTTCCCCTCATAAGGTA
65619954 AAATGA
1 AAATGA
65619960 TATGGTAATA
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.38
Consensus pattern (54 bp):
AAATGACTGTTTTACCCTTATATGGTAAAATGATTATTTTCCCCTCATAAGGTA
Found at i:65619960 original size:27 final size:27
Alignment explanation
Indices: 65619846--65619960 Score: 133
Period size: 27 Copynumber: 4.3 Consensus size: 27
65619836 TTAGATTGAT
* * *
65619846 AAATGACTGTTTTACCCTTATATGGTA
1 AAATGATTGTTTTGCCCTCATATGGTA
* * * *
65619873 AAATGCTTATTTTCCCCTCATAAGGTA
1 AAATGATTGTTTTGCCCTCATATGGTA
* *
65619900 AAATGACTGTTTTGCCCTTATATGGTA
1 AAATGATTGTTTTGCCCTCATATGGTA
65619927 AAATGATTGTTTTGCCCTCATGA-GGTA
1 AAATGATTGTTTTGCCCTCAT-ATGGTA
65619954 AAATGAT
1 AAATGAT
65619961 ATGGTAATAT
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
27 72 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.38
Consensus pattern (27 bp):
AAATGATTGTTTTGCCCTCATATGGTA
Found at i:65620328 original size:18 final size:18
Alignment explanation
Indices: 65620305--65620351 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
65620295 GACTTATATT
65620305 CTGTTACTGTACTGATTA
1 CTGTTACTGTACTGATTA
* *
65620323 CTGTTACTGCACTGTTTA
1 CTGTTACTGTACTGATTA
*
65620341 TTGTTACTGTA
1 CTGTTACTGTA
65620352 TTGGGCCAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (18 bp):
CTGTTACTGTACTGATTA
Found at i:65623892 original size:27 final size:27
Alignment explanation
Indices: 65623827--65623939 Score: 104
Period size: 27 Copynumber: 4.2 Consensus size: 27
65623817 CCAGATTGAT
* *
65623827 AAATGACTATTTTGCCCTCATGA-GGT-
1 AAATGACTGTTTTGCCCTTAT-ATGGTA
* * * *
65623853 AAATAATTATTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
* * *
65623880 AAATGTCTGTTTTGCCCTCATAAGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
*
65623907 AAATGACTGTTTTTCCCTTATATGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
*
65623934 ATATGA
1 AAATGA
65623940 TTATTTTTCC
Statistics
Matches: 69, Mismatches: 16, Indels: 3
0.78 0.18 0.03
Matches are distributed among these distances:
26 21 0.30
27 48 0.70
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATATGGTA
Found at i:65624300 original size:18 final size:18
Alignment explanation
Indices: 65624273--65624317 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
65624263 GACTTGTATT
*
65624273 CTGTTGCTGCACTGATTA
1 CTGTTACTGCACTGATTA
*
65624291 CTGTTACTGCACTGTTTA
1 CTGTTACTGCACTGATTA
*
65624309 TTGTTACTG
1 CTGTTACTG
65624318 TATTGGGTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.16, C:0.20, G:0.20, T:0.44
Consensus pattern (18 bp):
CTGTTACTGCACTGATTA
Found at i:65631556 original size:40 final size:40
Alignment explanation
Indices: 65631480--65631659 Score: 248
Period size: 40 Copynumber: 4.6 Consensus size: 40
65631470 TCGAATGATG
*
65631480 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
65631519 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
65631558 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
65631596 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
65631637 -CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
65631660 CGAACGAGTA
Statistics
Matches: 127, Mismatches: 6, Indels: 15
0.86 0.04 0.10
Matches are distributed among these distances:
37 14 0.11
38 21 0.17
39 42 0.33
40 48 0.38
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:65631613 original size:77 final size:79
Alignment explanation
Indices: 65631480--65631659 Score: 260
Period size: 77 Copynumber: 2.3 Consensus size: 79
65631470 TCGAATGATG
*
65631480 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTACTAAATCCGGACTAAGATCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTACTAAATCCGGACTAAGATCCGAAGGCATTTG
65631545 TGCGAGTTACTA-A
66 TGCGAGTTACTATA
* **
65631558 TCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAG-TACTAAATCCGGACTAAGAT-CCGAAGGCATT
65631620 TGTGCGAGTTACTATA
64 TGTGCGAGTTACTATA
* *
65631636 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
65631660 CGAACGAGTA
Statistics
Matches: 92, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
76 3 0.03
77 56 0.61
78 21 0.23
79 12 0.13
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTATA
Found at i:65631694 original size:79 final size:77
Alignment explanation
Indices: 65631481--65631694 Score: 220
Period size: 77 Copynumber: 2.7 Consensus size: 77
65631471 CGAATGATGT
* ** * **
65631481 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAG-TACTAAATCCGGACTAAGA-TCCGAAGGCATTT
1 CCGGGCTAAG-CCCGAAGGCATTGAAC-GAGTTACTAAATCCGGGTTAA-ATTCCGAAGGCATTT
*
65631544 GTGCGAGTTACTAAT
63 GTGCGAGTTACTAAA
** * *
65631559 CCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTG
1 CCGGGCTAAGCCCGAAGGCATTGAACGAGTTACTAAATCCGGGTTAAATTCCGAAGGCATTTGTG
65631624 CGAGTTACTATAA
66 CGAGTTACTA-AA
* *
65631637 CCGGGCTATGTCCCGAAGGCATTCGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATT-GAACGAGTTA-CTAAATCCGGGTTAAATTCCGAAGG
65631695 TACGTGATTC
Statistics
Matches: 117, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
76 2 0.02
77 55 0.47
78 20 0.17
79 28 0.24
80 12 0.10
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (77 bp):
CCGGGCTAAGCCCGAAGGCATTGAACGAGTTACTAAATCCGGGTTAAATTCCGAAGGCATTTGTG
CGAGTTACTAAA
Found at i:65639508 original size:40 final size:40
Alignment explanation
Indices: 65639435--65639616 Score: 248
Period size: 40 Copynumber: 4.6 Consensus size: 40
65639425 CGAATGATGA
*
65639435 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAT
*
65639475 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
65639514 CCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAAT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
65639554 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAT
*
65639594 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
65639617 CGAACGAGTA
Statistics
Matches: 127, Mismatches: 8, Indels: 14
0.85 0.05 0.09
Matches are distributed among these distances:
39 35 0.28
40 82 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:65639570 original size:79 final size:81
Alignment explanation
Indices: 65639434--65639616 Score: 259
Period size: 79 Copynumber: 2.3 Consensus size: 81
65639424 TCGAATGATG
*
65639434 ACCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
1 ACCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
65639498 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
65639513 TCCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -ACCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTTACTAAATCCGGACTAAGAT-CCGAAGGCA
65639575 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
*
65639593 ACCGGGCTATGTCCCGAAGGCATT
1 ACCGGGCTAAGTCCCGAAGGCATT
65639617 CGAACGAGTA
Statistics
Matches: 92, Mismatches: 7, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 62 0.67
80 29 0.32
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
ACCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:65639640 original size:79 final size:79
Alignment explanation
Indices: 65639464--65639651 Score: 222
Period size: 79 Copynumber: 2.4 Consensus size: 79
65639454 CTTTGTGCTA
** *
65639464 AGTTACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATCCCGGGCTAAGCCC
1 AGTTACTAAATCCGGGTTAA-ATCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCC
* **
65639528 GAAGGCATTGGTGCG
65 GAAGGCATTCGAACG
* *
65639543 AGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCC
1 AGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CC
65639607 CGAAGGCATTCGAACG
64 CGAAGGCATTCGAACG
* *
65639623 AG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 AGTTA-CTAAATCCGGGTTAAATCCCGAAGG
65639652 TACGTGATTC
Statistics
Matches: 94, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 67 0.71
80 24 0.26
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
AGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCG
AAGGCATTCGAACG
Found at i:65657214 original size:68 final size:68
Alignment explanation
Indices: 65657100--65657226 Score: 166
Period size: 68 Copynumber: 1.9 Consensus size: 68
65657090 CAGATGGTAT
* * ** *
65657100 GTAGCTAGGTCACATGTGTAATACGGGATGTATACCATGTGTACAAGAGAACTACGAGACATTAT
1 GTAGCTAGGTCACATGGGTAACACGACATGTACACCATGTGTACAAGAGAACTACGAGACATTAT
65657165 GAG
66 GAG
* * *
65657168 GTAGCTAGGTCACATGGGTGACACTACATGTACACCATGTAG-ACAAGAGAGCTACGAGA
1 GTAGCTAGGTCACATGGGTAACACGACATGTACACCATGT-GTACAAGAGAACTACGAGA
65657227 TAGATGTAGC
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
68 49 0.98
69 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22
Consensus pattern (68 bp):
GTAGCTAGGTCACATGGGTAACACGACATGTACACCATGTGTACAAGAGAACTACGAGACATTAT
GAG
Found at i:65667182 original size:40 final size:39
Alignment explanation
Indices: 65667055--65667184 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
65667045 ATGCTGGAAA
*
65667055 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGCGG
* * * *
65667095 CTACATCCGGGCGAAGACCCGAAGGCATTCGTGCAAGCCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGCGG
* *
65667135 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GCGG
65667175 TTATATCCGG
1 TTATATCCGG
65667185 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.05
40 71 0.95
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGCGG
Found at i:65670980 original size:46 final size:48
Alignment explanation
Indices: 65670861--65671081 Score: 174
Period size: 47 Copynumber: 4.7 Consensus size: 48
65670851 TTATGAGAGC
** * *
65670861 CAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGATG-AGGG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGTAAGT
* * * *
65670908 CTAGTTTAAGA-CATGGT-AGGGTCAT-GCATCGGCCTTGAGACGTAAGT
1 C-AGTGTAAGACCAT-GTCTGGGACATGGCATCGGCCTTGAGATGTAAGT
* *
65670955 CAGTGTAAGA-CATGTCTGGGACAT-GCAACGG-CTACTG-CATG-ATAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT--TGAGATGTA-AGT
* ** * * *
65671001 CAGTGTAAGACCATGTCTAGGACATGGCATC-AACTTGAGATATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGTAAGT
*
65671048 CAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC
65671082 ACCTTACCCA
Statistics
Matches: 138, Mismatches: 23, Indels: 25
0.74 0.12 0.13
Matches are distributed among these distances:
45 5 0.04
46 54 0.39
47 63 0.46
48 16 0.12
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGTAAGT
Found at i:65673713 original size:45 final size:45
Alignment explanation
Indices: 65673606--65673732 Score: 129
Period size: 45 Copynumber: 2.9 Consensus size: 45
65673596 GTTTTTCAAA
* * * *
65673606 TCACCGGCATT-TCGCCTGCTAGGCTCG-AGGCCCG-ATATCATT
1 TCACCGGCATTATAGTCTGCTAGGCTCGAAAGCCCGAATATCATC
*
65673648 TCACCGGTATTATAGTCTGCTAGGCTCGAAAGCCCGAATAGT-ATC
1 TCACCGGCATTATAGTCTGCTAGGCTCGAAAGCCCGAATA-TCATC
* * *
65673693 TCACTGGCATTATAGTCTGCTAAGCTC-AAAGGCTCGAATA
1 TCACCGGCATTATAGTCTGCTAGGCTCGAAA-GCCCGAATA
65673733 ATCAAATCAA
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
42 10 0.14
43 14 0.20
44 9 0.13
45 37 0.52
46 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (45 bp):
TCACCGGCATTATAGTCTGCTAGGCTCGAAAGCCCGAATATCATC
Found at i:65679680 original size:30 final size:31
Alignment explanation
Indices: 65679646--65679705 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
65679636 TTTTCGAGCA
* *
65679646 TAGGGGTAAAATGGTCATTTTGCC-AAAATC
1 TAGGGGCAAAATGGTCATTTTACCGAAAATC
*
65679676 TAGGGGCAAAATGGTTATTTTACCGAAAAT
1 TAGGGGCAAAATGGTCATTTTACCGAAAAT
65679706 GTGAATTTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (31 bp):
TAGGGGCAAAATGGTCATTTTACCGAAAATC
Found at i:65680187 original size:46 final size:46
Alignment explanation
Indices: 65680044--65680253 Score: 171
Period size: 46 Copynumber: 4.5 Consensus size: 46
65680034 TGTGTGAGCT
* * * * *
65680044 AGTGTAAGA-CATGTTTGGG-CATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GACGA-AGTC
* * * * * *
65680089 AGTGTAAGAGCATGTCTGGGACATGGCATCAGCATTGAGACGAGGGC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGACGAAGTC
* *
65680136 TAGTGTAAGA-CATGTCTGGGTCATTCATCGGCCTCGAGACGTAAGTC
1 -AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACG-AAGTC
* * *
65680183 AGTGTAAGA-CATGTCTGGGACATGCATCGG-CTACGGGATGATAGTT
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGACGA-AGTC
65680229 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
65680254 GAATCGACAC
Statistics
Matches: 135, Mismatches: 21, Indels: 16
0.78 0.12 0.09
Matches are distributed among these distances:
45 12 0.09
46 67 0.50
47 36 0.27
48 19 0.14
49 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACGAAGTC
Found at i:65680200 original size:93 final size:92
Alignment explanation
Indices: 65680041--65680210 Score: 229
Period size: 93 Copynumber: 1.8 Consensus size: 92
65680031 CTTTGTGTGA
* * *
65680041 GCTAGTGTAAGACATGTTTGGGCATGCATCGGCCACATTATGAGAGCCAGTGTAAGAGCATGTCT
1 GCTAGTGTAAGACATGTCTGGGCATGCATCGGCCACATGACGAGAGCCAGTGTAAGAGCATGTCT
65680106 GGGACATGGCATCAGCATTGAGACGAGG
66 GGGACAT-GCATCAGCATTGAGACGAGG
* * *
65680134 GCTAGTGTAAGACATGTCTGGGTCATTCATCGGCCTCGA-GACGTA-AGTCAGTGTAAGA-CATG
1 GCTAGTGTAAGACATGTCTGGG-CATGCATCGGCCAC-ATGACG-AGAGCCAGTGTAAGAGCATG
65680196 TCTGGGACATGCATC
63 TCTGGGACATGCATC
65680211 GGCTACGGGA
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
92 5 0.07
93 35 0.51
94 26 0.38
95 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTGGGCATGCATCGGCCACATGACGAGAGCCAGTGTAAGAGCATGTCT
GGGACATGCATCAGCATTGAGACGAGG
Found at i:65684693 original size:23 final size:23
Alignment explanation
Indices: 65684651--65684729 Score: 90
Period size: 23 Copynumber: 3.5 Consensus size: 23
65684641 AGAGCTGATG
* *
65684651 AACAGTAAGCTCTATTAAGCTGA
1 AACAGTAAGCTTTATCAAGCTGA
*
65684674 AACGGTAAGCTTTATCAAGCT-A
1 AACAGTAAGCTTTATCAAGCTGA
* *
65684696 TACAGTAAGC-TTATACGAGCTGA
1 AACAGTAAGCTTTAT-CAAGCTGA
65684719 AACAGTAAGCT
1 AACAGTAAGCT
65684730 CCAATGAGCT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
21 4 0.09
22 14 0.30
23 28 0.61
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (23 bp):
AACAGTAAGCTTTATCAAGCTGA
Found at i:65684762 original size:24 final size:23
Alignment explanation
Indices: 65684697--65684763 Score: 71
Period size: 24 Copynumber: 2.9 Consensus size: 23
65684687 ATCAAGCTAT
** *
65684697 ACAGTAAGCTTATACGAGCTGAA
1 ACAGTAAGCTCCTACGAGCTAAA
* *
65684720 ACAGTAAGCTCCAATGAGCTAAAA
1 ACAGTAAGCTCCTACGAGCT-AAA
*
65684744 ATAGTAAGCTCCTACGAGCT
1 ACAGTAAGCTCCTACGAGCT
65684764 GATATCTCGG
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
23 16 0.46
24 19 0.54
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (23 bp):
ACAGTAAGCTCCTACGAGCTAAA
Found at i:65685911 original size:12 final size:13
Alignment explanation
Indices: 65685883--65685915 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
65685873 TTATTTCTTT
65685883 TTCTCCATCTACC
1 TTCTCCATCTACC
*
65685896 TTCTCC-TCTTCC
1 TTCTCCATCTACC
65685908 TTCTCCAT
1 TTCTCCAT
65685916 AGCTGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:65687015 original size:28 final size:28
Alignment explanation
Indices: 65686975--65687042 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
65686965 TAGATGTACT
*
65686975 ATTATACCCCTATGTATGCAAAATTACC
1 ATTATACCCCTATGTATGCAAAATGACC
65687003 ATTATACCCCTATGTATGCAAAATGACC
1 ATTATACCCCTATGTATGCAAAATGACC
*
65687031 TTTATACCCCTA
1 ATTATACCCCTA
65687043 GGGTTAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.34, C:0.26, G:0.07, T:0.32
Consensus pattern (28 bp):
ATTATACCCCTATGTATGCAAAATGACC
Found at i:65687180 original size:28 final size:26
Alignment explanation
Indices: 65687148--65687237 Score: 90
Period size: 28 Copynumber: 3.2 Consensus size: 26
65687138 AGCAAGCGTC
* *
65687148 CTGGTGGCTATACGACAAATTATCTGTT
1 CTGGTGGC-ATGCCACAAA-TATCTGTT
* *
65687176 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGG-CATGCCACAAATATCTGTT
65687203 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCA-TGCCAC-AAATATCTGT-T
65687232 CTGGTG
1 CTGGTG
65687238 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
26 1 0.02
27 21 0.40
28 22 0.42
29 8 0.15
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.32
Consensus pattern (26 bp):
CTGGTGGCATGCCACAAATATCTGTT
Found at i:65687248 original size:29 final size:28
Alignment explanation
Indices: 65687162--65687237 Score: 109
Period size: 27 Copynumber: 2.7 Consensus size: 28
65687152 TGGCTATACG
* *
65687162 ACAAATTATCTGTTCTGGTGGCCCTGCC
1 ACAAAATATCTGTTCTGGTGGCACTGCC
*
65687190 AC-ATATATCTGTTCTGGTGGCACTGCC
1 ACAAAATATCTGTTCTGGTGGCACTGCC
65687217 ACAAAATATCTGTATCTGGTG
1 ACAAAATATCTGT-TCTGGTG
65687238 ACTCTGTCAC
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 24 0.57
28 11 0.26
29 7 0.17
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (28 bp):
ACAAAATATCTGTTCTGGTGGCACTGCC
Found at i:65694829 original size:28 final size:28
Alignment explanation
Indices: 65694796--65694861 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
65694786 TTAGATTTAC
*
65694796 TATACCCCTATGTATGCAAAATTACCAT
1 TATACCCCTATGTATGCAAAATGACCAT
*
65694824 TATACCCCTATGTATGCAAAATGACCTT
1 TATACCCCTATGTATGCAAAATGACCAT
65694852 TATACCCCTA
1 TATACCCCTA
65694862 GGGTTAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.33, C:0.27, G:0.08, T:0.32
Consensus pattern (28 bp):
TATACCCCTATGTATGCAAAATGACCAT
Found at i:65695025 original size:27 final size:27
Alignment explanation
Indices: 65694967--65695056 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
65694957 AGGAAGCGTC
65694967 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
65694995 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
65695022 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
65695051 CTGGTG
1 CTGGTG
65695057 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:65695075 original size:55 final size:56
Alignment explanation
Indices: 65694967--65695081 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
65694957 AGGAAGCGTC
* *
65694967 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
65695022 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
65695078 CTGG
1 CTGG
65695082 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:65700632 original size:29 final size:29
Alignment explanation
Indices: 65700542--65700701 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
65700532 ACTCGATTTC
* * **
65700542 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
65700571 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
65700599 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
65700629 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
65700658 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
65700687 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
65700702 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:65708682 original size:29 final size:29
Alignment explanation
Indices: 65708592--65708751 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
65708582 ACTCGATTTC
* * **
65708592 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
65708621 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
65708649 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
65708679 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
65708708 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
65708737 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
65708752 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:65714199 original size:39 final size:39
Alignment explanation
Indices: 65714155--65714350 Score: 295
Period size: 39 Copynumber: 5.0 Consensus size: 39
65714145 GATGTGTATG
65714155 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
*
65714194 AATGTGTGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
*
65714233 AATGTGCGAATTGTGATATCCGGTCTAAGCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
* * *
65714272 ATTGTGCGAGA-TATGATATCCGGGCTAAGCCCGAAGGCG
1 AATGTGCGA-ATTGTGATATCCGGGCTAAGCCCGAAGGCA
* * *
65714311 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCA
65714351 TTTGTGCGGG
Statistics
Matches: 143, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 133 0.93
40 10 0.07
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (39 bp):
AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
Found at i:65714248 original size:78 final size:78
Alignment explanation
Indices: 65714155--65714389 Score: 301
Period size: 78 Copynumber: 3.0 Consensus size: 78
65714145 GATGTGTATG
* *
65714155 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTGTGA-ATTGTGATATCCGGGC
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAGA-TATGATATCCGGGC
65714219 TAAGCCCGAAGGCA
65 TAAGCCCGAAGGCA
* *
65714233 AATGTGCGAATTGTGATATCCGGTCTAAGCCCGAAGGCAATTGTGCGAGATATGATATCCGGGCT
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAGATATGATATCCGGGCT
*
65714298 AAGCCCGAAGGCG
66 AAGCCCGAAGGCA
* * * ** * * * *
65714311 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTATCATAACCGGGC
1 AATGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAATGTGCGAGATATGATATCCGGGC
*
65714376 TATGTCCCGAAGGC
65 TAAG-CCCGAAGGC
65714390 GTTTGAACGA
Statistics
Matches: 139, Mismatches: 15, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
78 96 0.69
79 34 0.24
80 9 0.06
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (78 bp):
AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAGATATGATATCCGGGCT
AAGCCCGAAGGCA
Found at i:65714417 original size:79 final size:77
Alignment explanation
Indices: 65714167--65714427 Score: 220
Period size: 78 Copynumber: 3.3 Consensus size: 77
65714157 TGTGCGAATT
* * * * * *
65714167 GTGATATCCGGGCTAAGCCCGAAGGCAAATGTGTGA-ATTGTGATATCCGGGCTAAGCCCGAAGG
1 GTGATATCC-GGTTAAGCCCGAAGGCAATTGTGCGAGA-TATCATAACCGGGCTAAGCCCGAAGG
* * ** * *
65714231 CAAATGTGCGAATT
64 CGATTGAACGAGTA
* *
65714245 GTGATATCCGGTCTAAGCCCGAAGGCAATTGTGCGAGATATGATATCCGGGCTAAGCCCGAAGGC
1 GTGATATCCGGT-TAAGCCCGAAGGCAATTGTGCGAGATATCATAACCGGGCTAAGCCCGAAGGC
** *
65714310 GATTGTGCGAGTT
65 GATTGAACGAGTA
* * * *
65714323 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTATCATAACCGGGCTATGTCCCGAAG
1 GTGATATCC-GGTTAAG-CCCGAAGGCAATTGTGCGAGATATCATAACCGGGCTAAG-CCCGAAG
*
65714388 GCGTTTGAACGAGTA
63 GCGATTGAACGAGTA
* *
65714403 GCT-ATATCCTGTTAAACTCCGAAGG
1 G-TGATATCCGGTTAAGC-CCGAAGG
65714428 TATGTGATTT
Statistics
Matches: 157, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
77 2 0.01
78 80 0.51
79 49 0.31
80 25 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.24
Consensus pattern (77 bp):
GTGATATCCGGTTAAGCCCGAAGGCAATTGTGCGAGATATCATAACCGGGCTAAGCCCGAAGGCG
ATTGAACGAGTA
Found at i:65721915 original size:39 final size:39
Alignment explanation
Indices: 65721871--65722066 Score: 313
Period size: 39 Copynumber: 5.0 Consensus size: 39
65721861 GATGTGTATG
65721871 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
65721910 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
*
65721949 AATGTGCGAATTGTGATATTCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
* *
65721988 ATTGTGCGAGA-TATGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGA-ATTGTGATATCCGGGCTAAGCCCGAAGGCA
* * *
65722027 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCA
65722067 TTTGTGCGGG
Statistics
Matches: 147, Mismatches: 7, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
39 136 0.93
40 11 0.07
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.22
Consensus pattern (39 bp):
AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
Found at i:65721964 original size:78 final size:78
Alignment explanation
Indices: 65721871--65722093 Score: 313
Period size: 78 Copynumber: 2.8 Consensus size: 78
65721861 GATGTGTATG
*
65721871 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGA-ATTGTGATATCCGGGC
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAGA-TATGATATCCGGGC
65721935 TAAGCCCGAAGGCA
65 TAAGCCCGAAGGCA
* *
65721949 AATGTGCGAATTGTGATATTCGGGCTAAGCCCGAAGGCAATTGTGCGAGATATGATATCCGGGCT
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAGATATGATATCCGGGCT
65722014 AAGCCCGAAGGCA
66 AAGCCCGAAGGCA
* * * ** * * * *
65722027 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTATCATAACCGGGC
1 AATGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAATGTGCGAGATATGATATCCGGGC
65722092 TA
65 TA
65722094 TGTCTCGAAG
Statistics
Matches: 131, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
78 98 0.75
79 33 0.25
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (78 bp):
AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTGCGAGATATGATATCCGGGCT
AAGCCCGAAGGCA
Found at i:65723879 original size:27 final size:28
Alignment explanation
Indices: 65723849--65723948 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
65723839 ATAGTGAGTC
65723849 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
65723876 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
65723904 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
65723935 CGCACACTTAGTGC
1 CGCACACTTAGTGC
65723949 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:65724799 original size:7 final size:7
Alignment explanation
Indices: 65724789--65724813 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
65724779 TCATCACCAC
65724789 AACATCA
1 AACATCA
65724796 AACATCA
1 AACATCA
65724803 AACATCA
1 AACATCA
65724810 AACA
1 AACA
65724814 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:65731730 original size:27 final size:28
Alignment explanation
Indices: 65731700--65731799 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
65731690 ATAGTGAGTC
65731700 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
65731727 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
65731755 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
65731786 CGCACACTTAGTGC
1 CGCACACTTAGTGC
65731800 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:65732649 original size:7 final size:7
Alignment explanation
Indices: 65732639--65732663 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
65732629 TCATCACCAC
65732639 AACATCA
1 AACATCA
65732646 AACATCA
1 AACATCA
65732653 AACATCA
1 AACATCA
65732660 AACA
1 AACA
65732664 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:65740889 original size:16 final size:16
Alignment explanation
Indices: 65740868--65740903 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
65740858 TATTGAATTG
65740868 TAATGATTTGATAGTT
1 TAATGATTTGATAGTT
65740884 TAATGATTTGATAGTT
1 TAATGATTTGATAGTT
65740900 TAAT
1 TAAT
65740904 TATCGAAGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (16 bp):
TAATGATTTGATAGTT
Found at i:65741929 original size:39 final size:40
Alignment explanation
Indices: 65741811--65741980 Score: 193
Period size: 39 Copynumber: 4.3 Consensus size: 40
65741801 AATTATTGTA
* * *
65741811 TGAAAGCACATACGTGCCCCTGTTTATACTTCGGTACACC
1 TGAATGCACATACGTGCCCCTGTTTATACTTTGGTACCCC
* * * * *
65741851 T-AATGTAGATATGTGTCTCTGTTTATACTTT-GTACCCC
1 TGAATGCACATACGTGCCCCTGTTTATACTTTGGTACCCC
* *
65741889 TGAATGCATATACGTGCCCCT-TTTGTACTTTGGTACCCC
1 TGAATGCACATACGTGCCCCTGTTTATACTTTGGTACCCC
** * *
65741928 TGAATGCACATACGTGCTGCTGTTCACACTTTGGTACCCC
1 TGAATGCACATACGTGCCCCTGTTTATACTTTGGTACCCC
65741968 TGAATGCACATAC
1 TGAATGCACATAC
65741981 ATACCTTTTT
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
38 16 0.15
39 62 0.58
40 29 0.27
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTGTTTATACTTTGGTACCCC
Found at i:65741951 original size:78 final size:77
Alignment explanation
Indices: 65741811--65742025 Score: 216
Period size: 78 Copynumber: 2.7 Consensus size: 77
65741801 AATTATTGTA
* * * * * * *
65741811 TGAAAGCACATACGTGCCCCTGTTTATACTTCGGTACACCTAATGTAGATATGTGTCTCTGTTTA
1 TGAATGCACATACGTGCCCCT-TTTGTACTTCGGTACCCCTAATGCACATACGTG-CTCTGTTCA
*
65741876 TACTTT-GTACCCC
64 CACTTTGGTACCCC
* *
65741889 TGAATGCATATACGTGCCCCTTTTGTACTTTGGTACCCCTGAATGCACATACGTGCTGCTGTTCA
1 TGAATGCACATACGTGCCCCTTTTGTACTTCGGTACCCCT-AATGCACATACGTGCT-CTGTTCA
65741954 CACTTTGGTACCCC
64 CACTTTGGTACCCC
* * ** * * *
65741968 TGAATGCACATACATACCTTTTTTTGTACTTCGGTACCCGTAAATGCATATACATGCT
1 TGAATGCACATACGTGCC-CCTTTTGTACTTCGGTACCCCT-AATGCACATACGTGCT
65742026 TTTGAAATTA
Statistics
Matches: 113, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
77 18 0.16
78 41 0.36
79 22 0.19
80 32 0.28
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.35
Consensus pattern (77 bp):
TGAATGCACATACGTGCCCCTTTTGTACTTCGGTACCCCTAATGCACATACGTGCTCTGTTCACA
CTTTGGTACCCC
Found at i:65742004 original size:40 final size:39
Alignment explanation
Indices: 65741867--65742022 Score: 127
Period size: 40 Copynumber: 4.0 Consensus size: 39
65741857 AGATATGTGT
* * * *
65741867 CTCTGTTTATACTTT-GTACCCCTGAATGCATATACGTGC
1 CTCTTTTTGTACTTTGGTACCCCTGAATGCACATACAT-C
* * *
65741906 C-CCTTTTGTACTTTGGTACCCCTGAATGCACATACGTG
1 CTCTTTTTGTACTTTGGTACCCCTGAATGCACATACATC
* ***
65741944 CTGCTGTTCACACTTTGGTACCCCTGAATGCACATACATAC
1 CT-CTTTTTGTACTTTGGTACCCCTGAATGCACATACAT-C
* * * * *
65741985 CTTTTTTTGTACTTCGGTACCCGTAAATGCATATACAT
1 CTCTTTTTGTACTTTGGTACCCCTGAATGCACATACAT
65742023 GCTTTTGAAA
Statistics
Matches: 92, Mismatches: 21, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
38 11 0.12
39 22 0.24
40 57 0.62
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (39 bp):
CTCTTTTTGTACTTTGGTACCCCTGAATGCACATACATC
Found at i:65742779 original size:28 final size:29
Alignment explanation
Indices: 65742735--65742812 Score: 106
Period size: 30 Copynumber: 2.7 Consensus size: 29
65742725 CATGACTGTC
65742735 ACACGACTGTGTGACACACA-GCCTAGCG
1 ACACGACTGTGTGACACACAGGCCTAGCG
*
65742763 ACATGACTGTGTGACACACATGGCCTAGCG
1 ACACGACTGTGTGACACACA-GGCCTAGCG
*
65742793 ACACG-GTCGTGTGACACACA
1 ACACGACT-GTGTGACACACA
65742813 AGGACTGGTA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
28 19 0.43
29 1 0.02
30 24 0.55
ACGTcount: A:0.28, C:0.29, G:0.26, T:0.17
Consensus pattern (29 bp):
ACACGACTGTGTGACACACAGGCCTAGCG
Found at i:65747583 original size:27 final size:26
Alignment explanation
Indices: 65747535--65747594 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
65747525 GCGAAACTAC
*
65747535 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
65747562 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
65747588 CAGATAT
1 CAGATAT
65747595 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:65747685 original size:27 final size:26
Alignment explanation
Indices: 65747637--65747688 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
65747627 GCGAGGCTGC
*
65747637 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
65747663 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
65747689 TTGCATCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:65748311 original size:26 final size:27
Alignment explanation
Indices: 65748282--65748335 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
65748272 TTACACAAGT
*
65748282 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
65748308 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
65748335 T
1 T
65748336 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:65748368 original size:27 final size:27
Alignment explanation
Indices: 65748338--65748507 Score: 189
Period size: 27 Copynumber: 6.3 Consensus size: 27
65748328 GGCAAAATGG
* * * *
65748338 TAATTTTACCCCATAAGGGTATCTCGA
1 TAATTCTACCCTATAGGGGTATTTCGA
* *
65748365 TAATTCTACCCTACAGGGGTATTTTGA
1 TAATTCTACCCTATAGGGGTATTTCGA
* * *
65748392 TAATTCTACCCTACAAGGGTATTTCAA
1 TAATTCTACCCTATAGGGGTATTTCGA
* *
65748419 TAATTCTATCCTATAGGGGT-TTTCGG
1 TAATTCTACCCTATAGGGGTATTTCGA
*
65748445 TAATTCTACCCTATAGGGGTATTTCGG
1 TAATTCTACCCTATAGGGGTATTTCGA
* * *
65748472 TAATTCTACCTTACAGGGGTATTTTGA
1 TAATTCTACCCTATAGGGGTATTTCGA
*
65748499 TAGTTCTAC
1 TAATTCTAC
65748508 AACTTATCCA
Statistics
Matches: 122, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 23 0.19
27 99 0.81
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.38
Consensus pattern (27 bp):
TAATTCTACCCTATAGGGGTATTTCGA
Found at i:65752854 original size:20 final size:19
Alignment explanation
Indices: 65752829--65752872 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
65752819 ATTGGGCCTT
65752829 GCCCATATT-AACACAGTTGG
1 GCCCAT-TTCAACACAGTT-G
*
65752849 GCCCATTTCAATACAGTTG
1 GCCCATTTCAACACAGTTG
65752868 GCCCA
1 GCCCA
65752873 CAACAAAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (19 bp):
GCCCATTTCAACACAGTTG
Done.