Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 216 of 410
Found at i:66087903 original size:43 final size:43
Alignment explanation
Indices: 66087813--66087906 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
66087803 TGTGGTTACG
* * *
66087813 TGTAAGACCATGCCTGGGACATTGGCATCGATAATCGACTATG
1 TGTAAGACCATGCCTGGGACAGTGGCATCGATAATCGAATATA
* *
66087856 TGTAAGACCCTGTCTGGGACAGTGGCATCGAT-AT-GTAATAATA
1 TGTAAGACCATGCCTGGGACAGTGGCATCGATAATCG-AAT-ATA
66087899 TGTAAGAC
1 TGTAAGAC
66087907 TATATCTGGG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
41 1 0.02
42 4 0.09
43 39 0.89
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (43 bp):
TGTAAGACCATGCCTGGGACAGTGGCATCGATAATCGAATATA
Found at i:66089866 original size:27 final size:25
Alignment explanation
Indices: 66089807--66089866 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 25
66089797 AGTTTTCTCC
*
66089807 TAAATTTTAATTTGTTTTAATTATT
1 TAAATTTTAATTTGTTTTAATTAGT
*
66089832 TAACTTTTCAATTTGTTTTGAATT-GT
1 TAAATTTT-AATTTGTTTT-AATTAGT
66089858 TAATATTTT
1 TAA-ATTTT
66089867 GGACTAATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 7 0.24
26 14 0.48
27 8 0.28
ACGTcount: A:0.28, C:0.03, G:0.07, T:0.62
Consensus pattern (25 bp):
TAAATTTTAATTTGTTTTAATTAGT
Found at i:66097235 original size:22 final size:23
Alignment explanation
Indices: 66097209--66097254 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
66097199 CAACCAAACC
66097209 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
66097231 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
66097254 A
1 A
66097255 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:66097260 original size:23 final size:23
Alignment explanation
Indices: 66097216--66097260 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
66097206 ACCAATTCAA
*
66097216 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
66097239 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
66097261 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:66104309 original size:27 final size:27
Alignment explanation
Indices: 66104276--66104777 Score: 627
Period size: 27 Copynumber: 18.6 Consensus size: 27
66104266 AAAGTACTCC
66104276 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
66104303 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
66104330 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
66104357 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
66104384 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
66104411 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
66104438 CAATTTACAGAATTATTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
66104465 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
66104492 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
66104519 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
66104546 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
66104573 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
66104600 CGATTTATAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
66104626 CTAATTTACATAATTATCGTTTTACCC-
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
66104653 CTGATTTACATAATTATCGTTTTACCCT
1 C-GATTTACAGAATTACCGTTTTACCCT
*
66104681 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
66104708 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
66104735 TGATTTACAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
66104762 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
66104778 TAAAATACCC
Statistics
Matches: 421, Mismatches: 46, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
26 4 0.01
27 413 0.98
28 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:66106043 original size:25 final size:25
Alignment explanation
Indices: 66106015--66106062 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
66106005 TTATACCATG
* * *
66106015 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
66106040 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
66106063 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:66106165 original size:20 final size:20
Alignment explanation
Indices: 66106105--66106165 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
66106095 ATAAATATGG
*
66106105 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
66106125 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
66106145 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
66106165 T
1 T
66106166 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:66106271 original size:24 final size:24
Alignment explanation
Indices: 66106215--66106404 Score: 287
Period size: 24 Copynumber: 8.0 Consensus size: 24
66106205 GAGGAAGTGA
66106215 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
66106239 -AAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
66106262 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
66106286 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
66106310 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
66106333 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
66106357 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
66106381 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
66106405 ATGATAAAGC
Statistics
Matches: 155, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
23 45 0.29
24 99 0.64
25 11 0.07
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:66106284 original size:47 final size:47
Alignment explanation
Indices: 66106215--66106379 Score: 276
Period size: 47 Copynumber: 3.5 Consensus size: 47
66106205 GAGGAAGTGA
*
66106215 AAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATC
66106262 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC-AAAGGGCTTATGCCCCAGTTATC
* *
66106310 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATC
* *
66106357 GAAAGGGCTTTTGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
66106380 TAAAAGAGGC
Statistics
Matches: 112, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
47 67 0.60
48 45 0.40
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATC
Found at i:66106337 original size:71 final size:71
Alignment explanation
Indices: 66106215--66106405 Score: 287
Period size: 71 Copynumber: 2.7 Consensus size: 71
66106205 GAGGAAGTGA
*
66106215 AAAAGGGCTTATGCCCCAGTTATC-AAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCC
66106279 AGTTATC
65 AGTTATC
66106286 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCA
*
66106351 GTTATT
66 GTTATC
* * * *
66106357 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-CCAGTTATA
66106406 TGATAAAGCA
Statistics
Matches: 111, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
71 78 0.70
72 33 0.30
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCA
GTTATC
Found at i:66109473 original size:27 final size:27
Alignment explanation
Indices: 66109440--66109858 Score: 526
Period size: 27 Copynumber: 15.6 Consensus size: 27
66109430 AAAGTACTCC
66109440 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
66109467 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* ** *
66109494 TGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
66109521 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
66109548 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
66109575 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
66109602 C-AGTTTACAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
66109629 TGATTTACAGAATTACTG-TTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
66109655 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
66109682 CGATTTATAGAATTACCATTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* *
66109708 CTAATTTACATAATTACCGTTTTACCC-
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
66109735 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
66109762 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
66109789 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
66109816 TGATTTACAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
66109843 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
66109859 TAAAATACCC
Statistics
Matches: 347, Mismatches: 36, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
26 51 0.15
27 293 0.84
28 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:66111123 original size:25 final size:25
Alignment explanation
Indices: 66111095--66111142 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
66111085 TTATACCATG
* * *
66111095 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
66111120 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
66111143 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:66111245 original size:20 final size:20
Alignment explanation
Indices: 66111185--66111245 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
66111175 ATAAATATGG
*
66111185 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
66111205 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
66111225 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
66111245 T
1 T
66111246 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:66111319 original size:24 final size:24
Alignment explanation
Indices: 66111293--66111457 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
66111283 TGGAGAATGA
66111293 AAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
66111316 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
66111340 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
66111364 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
66111387 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
66111410 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
66111434 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
66111458 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 4, Indels: 8
0.92 0.03 0.06
Matches are distributed among these distances:
22 22 0.17
23 13 0.10
24 87 0.65
25 11 0.08
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:66111407 original size:70 final size:70
Alignment explanation
Indices: 66111293--66111458 Score: 237
Period size: 70 Copynumber: 2.3 Consensus size: 70
66111283 TGGAGAATGA
66111293 AAAAGGGCTTATG-CCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTAT--AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
66111357 AGTTATC
64 AGTTATC
** *
66111364 AAAAGGGCTTATGCCCCAGTTATAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAG
1 AAAAGGGCTTATGCCCCAGTTATAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG
*
66111429 TTATT
66 TTATC
*
66111434 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
66111459 TGATAAAGCA
Statistics
Matches: 87, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
70 53 0.61
71 25 0.29
72 9 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (70 bp):
AAAAGGGCTTATGCCCCAGTTATAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG
TTATC
Found at i:66111408 original size:46 final size:47
Alignment explanation
Indices: 66111293--66111457 Score: 237
Period size: 46 Copynumber: 3.5 Consensus size: 47
66111283 TGGAGAATGA
66111293 AAAAGGGCTTATG-CCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
66111339 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
** *
66111387 -AAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
*
66111434 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
66111458 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
46 42 0.39
47 14 0.13
48 42 0.39
49 11 0.10
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
Found at i:66111703 original size:31 final size:31
Alignment explanation
Indices: 66111649--66111712 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
66111639 CGTTTACAGT
*
66111649 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
66111680 AAAGGCTTCGGCCCAGTGTTATGAGATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
66111711 AA
1 AA
66111713 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:66114701 original size:23 final size:23
Alignment explanation
Indices: 66114654--66114707 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
66114644 GTAGTAGGGG
* ***
66114654 ACAGTGGTTTTGGTAAAATTGGA
1 ACAGTGGTTTTGATAAAACCAGA
66114677 ACAGTGGTTTTGATAAAACCAGA
1 ACAGTGGTTTTGATAAAACCAGA
66114700 ACAGTGGT
1 ACAGTGGT
66114708 CTCGGGACCA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (23 bp):
ACAGTGGTTTTGATAAAACCAGA
Found at i:66115012 original size:29 final size:30
Alignment explanation
Indices: 66114979--66115038 Score: 72
Period size: 29 Copynumber: 2.0 Consensus size: 30
66114969 GATTCATCCA
66114979 TGGAAAAT-AAAATAAA-AAAATGATGA-AAT
1 TGGAAAATGAAAA-AAATAAAA-GATGATAAT
*
66115008 TGGAAAGTGAAAAAAATAAAAGATGATAAT
1 TGGAAAATGAAAAAAATAAAAGATGATAAT
66115038 T
1 T
66115039 AATTAAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.62, C:0.00, G:0.17, T:0.22
Consensus pattern (30 bp):
TGGAAAATGAAAAAAATAAAAGATGATAAT
Found at i:66115674 original size:26 final size:26
Alignment explanation
Indices: 66115520--66115699 Score: 85
Period size: 26 Copynumber: 7.2 Consensus size: 26
66115510 CTCCTATTTC
66115520 ATGGCTCTTTGTGAGCATTCCTGA-T-
1 ATGGCTCTTTGTGAGC-TTCCTGATTA
** *
66115545 A-GGCTCTTCATGAGCTTCCTAATTA
1 ATGGCTCTTTGTGAGCTTCCTGATTA
**** *
66115570 AAATTTCTTTGTGAACTTCCTGATT-
1 ATGGCTCTTTGTGAGCTTCCTGATTA
* *
66115595 ATGGCTC-TTATGAGCTTCTTG-TTA
1 ATGGCTCTTTGTGAGCTTCCTGATTA
* *** * * *
66115619 TATAGC-CCGGGTAAGCTTTCT-AAT-
1 -ATGGCTCTTTGTGAGCTTCCTGATTA
66115643 A-GGCTCTTTGTGAGCTTCCTGATTA
1 ATGGCTCTTTGTGAGCTTCCTGATTA
* *
66115668 ATGGCTCTTTGTGAGTTTTCTG-TTA
1 ATGGCTCTTTGTGAGCTTCCTGATTA
66115693 TATGGCT
1 -ATGGCT
66115700 TGAGAGAGTG
Statistics
Matches: 109, Mismatches: 34, Indels: 23
0.66 0.20 0.14
Matches are distributed among these distances:
22 2 0.02
23 19 0.17
24 27 0.25
25 21 0.19
26 40 0.37
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.42
Consensus pattern (26 bp):
ATGGCTCTTTGTGAGCTTCCTGATTA
Found at i:66119090 original size:28 final size:29
Alignment explanation
Indices: 66119036--66119090 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
66119026 ACAGGGGTTT
* *
66119036 TCACACGGCCAAGCACACCCTTGTGTCCC
1 TCACACGGCCAAGCACACACTCGTGTCCC
*
66119065 TCACACGGCCATG-ACACACTCGTGTC
1 TCACACGGCCAAGCACACACTCGTGTC
66119091 GTAGCCCGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 11 0.48
29 12 0.52
ACGTcount: A:0.22, C:0.42, G:0.18, T:0.18
Consensus pattern (29 bp):
TCACACGGCCAAGCACACACTCGTGTCCC
Found at i:66121228 original size:49 final size:50
Alignment explanation
Indices: 66121072--66121234 Score: 184
Period size: 50 Copynumber: 3.3 Consensus size: 50
66121062 TTGGTCGCAT
* * * * * *
66121072 GTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGCGTAGTACTAA
1 GTGCAGGCTACTACGTGTACCAGATAA-TTAGGTCACGTGTGTAGTACTAA
* * ** *
66121123 GTGCAGGCTAATACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTGA
1 GTGCAGGCTACTACGTGTACCAGATAATTAGGTCACGTGTGTAGTACTAA
* * *
66121173 GTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCATGTGTAGTACTAA
1 GTGCAGGCTACTACGTGTACCAGATAATTAGGTCACGTGTGTAGTACTAA
66121222 GTGCAGGCTACTA
1 GTGCAGGCTACTA
66121235 TGCATACTAG
Statistics
Matches: 93, Mismatches: 19, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
49 30 0.32
50 43 0.46
51 20 0.22
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (50 bp):
GTGCAGGCTACTACGTGTACCAGATAATTAGGTCACGTGTGTAGTACTAA
Found at i:66124351 original size:15 final size:15
Alignment explanation
Indices: 66124333--66124365 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
66124323 TGGATTCTCG
66124333 TATCATGGATTTCTT
1 TATCATGGATTTCTT
*
66124348 TATCTTGGATTTCTT
1 TATCATGGATTTCTT
66124363 TAT
1 TAT
66124366 TCTGGGCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (15 bp):
TATCATGGATTTCTT
Found at i:66126623 original size:15 final size:15
Alignment explanation
Indices: 66126605--66126634 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
66126595 AAATCGAGAT
66126605 TCGGGCTTAAATCGG
1 TCGGGCTTAAATCGG
66126620 TCGGGCTTAAATCGG
1 TCGGGCTTAAATCGG
66126635 GAAAATACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.33, T:0.27
Consensus pattern (15 bp):
TCGGGCTTAAATCGG
Found at i:66127263 original size:49 final size:50
Alignment explanation
Indices: 66127133--66127265 Score: 169
Period size: 50 Copynumber: 2.7 Consensus size: 50
66127123 ATCTATTGTG
* * ***
66127133 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACAATT
* * *
66127183 AGGTCACGTGTGTAGGACTAAGTGCAGGCTACTACGTGTACCGGACAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACAATT
* *
66127233 -GGTCGCATGTGTAGTACTAAGTGCAAGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
66127266 TGCGTACTAG
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
49 29 0.40
50 44 0.60
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACAATT
Found at i:66129148 original size:46 final size:43
Alignment explanation
Indices: 66129005--66129140 Score: 132
Period size: 47 Copynumber: 3.0 Consensus size: 43
66128995 CCCGCCCCTA
66129005 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TT
* * * *
66129052 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATT
66129098 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT
66129141 CCTAGTGACA
Statistics
Matches: 75, Mismatches: 8, Indels: 14
0.77 0.08 0.14
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 29 0.39
47 30 0.40
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (43 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATT
Found at i:66131564 original size:15 final size:15
Alignment explanation
Indices: 66131546--66131574 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
66131536 AAGATAGAGA
66131546 AATCCAGAATAAATG
1 AATCCAGAATAAATG
66131561 AATCCAGAATAAAT
1 AATCCAGAATAAAT
66131575 AAACCCAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.14, G:0.10, T:0.21
Consensus pattern (15 bp):
AATCCAGAATAAATG
Found at i:66134711 original size:93 final size:93
Alignment explanation
Indices: 66134548--66134718 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
66134538 GCCCCTAAGT
*
66134548 GAACTCAGACTCAACACAACGAGCTCGAGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACACAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
* *
66134613 TGAGTTTGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * * * *
66134641 GAACTCGGACTCAACTCAACGAGTTC-AGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACACAACGAGCTCGAG-CATTCGCATCCATAAGTGAACTCAGACTCAACTCA
66134705 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
66134719 TCAACCATCC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
92 2 0.03
93 67 0.97
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACACAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:66138932 original size:40 final size:40
Alignment explanation
Indices: 66138888--66139069 Score: 210
Period size: 40 Copynumber: 4.5 Consensus size: 40
66138878 GCCACTCGTT
* * * *
66138888 CAAATACCTTCGGGACATGGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
66138928 CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
66138968 CAAATGCCTT-TGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * *
66139008 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
66139049 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
66139070 GGGACATCAT
Statistics
Matches: 126, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
39 3 0.02
40 110 0.87
41 13 0.10
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:66141337 original size:49 final size:49
Alignment explanation
Indices: 66141184--66141352 Score: 166
Period size: 49 Copynumber: 3.5 Consensus size: 49
66141174 GATGCCGACA
* * * *
66141184 CCATGTCCCAGACATGGTCTTACATTG--GCT-AGTATATCAAAGTCGATG
1 CCATGTCCCAGACA-GGTCTTACACTGACTCTCA-TATATCGAGGTCGATG
* * * * *
66141232 CCATGTCCTAGATAGGTCTTACACTGACTTTCATATATCGAGGCCGGTG
1 CCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGTCGATG
* * *
66141281 CCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCG-GTGTCGATG
1 CCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG-GTCGATG
*
66141330 CCATGTCCCAAACAGGTCTTACA
1 CCATGTCCCAGACAGGTCTTACA
66141353 TTGAGACACA
Statistics
Matches: 98, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
47 11 0.11
48 13 0.13
49 73 0.74
50 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.28
Consensus pattern (49 bp):
CCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGTCGATG
Found at i:66143581 original size:27 final size:28
Alignment explanation
Indices: 66143524--66143593 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
66143514 AAATTTGTAC
**
66143524 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
66143552 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
66143579 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
66143594 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:66143602 original size:27 final size:27
Alignment explanation
Indices: 66143524--66143605 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
66143514 AAATTTGTAC
* *
66143524 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
66143552 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
66143579 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
66143606 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:66150972 original size:26 final size:25
Alignment explanation
Indices: 66150936--66151006 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 25
66150926 AGGAAGTGCA
66150936 AAAAGGGCTTTTGCCCCAGTTTACC
1 AAAAGGGCTTTTGCCCCAGTTTACC
** *
66150961 GAAAAGGGCTTTTGCCCCAAATTATC
1 -AAAAGGGCTTTTGCCCCAGTTTACC
66150987 AAAAGGGC-TTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
66151007 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
24 10 0.25
25 8 0.20
26 22 0.55
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTACC
Found at i:66151263 original size:31 final size:31
Alignment explanation
Indices: 66151228--66151317 Score: 83
Period size: 38 Copynumber: 2.7 Consensus size: 31
66151218 GTTTACAGTG
*
66151228 AAGGCTTCGGCCTAGTAATATGAAATATGAA
1 AAGGCTTCGGCCCAGTAATATGAAATATGAA
*
66151259 AAGGCTTTGGCCCAGTGTTATGAATTATGAAATATGAA
1 AAGGCTTCGGCCCA--G---T-AA-TATGAAATATGAA
*
66151297 AAGGCTTCGACCCAGT-ATATG
1 AAGGCTTCGGCCCAGTAATATG
66151318 CTGAGATTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
30 4 0.08
31 13 0.27
33 2 0.04
36 2 0.04
37 2 0.04
38 25 0.52
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.28
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTAATATGAAATATGAA
Found at i:66154107 original size:48 final size:48
Alignment explanation
Indices: 66154036--66154194 Score: 282
Period size: 48 Copynumber: 3.3 Consensus size: 48
66154026 ACGAAAATTG
66154036 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
66154084 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
66154132 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* * *
66154180 TTGTAGGCGATATGT
1 ATGTATGAGATATGT
66154195 GTATATTGTG
Statistics
Matches: 107, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 107 1.00
ACGTcount: A:0.33, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:66154430 original size:37 final size:37
Alignment explanation
Indices: 66154331--66154438 Score: 182
Period size: 36 Copynumber: 2.9 Consensus size: 37
66154321 GGAAATATAT
*
66154331 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
66154368 TCCGGGTAAGA-CCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
66154404 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
66154439 CATCGGAGGT
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
36 35 0.52
37 32 0.48
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:66162855 original size:25 final size:26
Alignment explanation
Indices: 66162795--66162865 Score: 110
Period size: 26 Copynumber: 2.8 Consensus size: 26
66162785 AGGAAGTGCA
66162795 AAAAGGGCTTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
*
66162821 AAAAGGGCTTTTGCCCCAGTTTATC-
1 AAAAGGGCTTTTGCCCCAGTTTACCG
*
66162846 AAAATGGC-TTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
66162866 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 12 0.28
25 7 0.16
26 24 0.56
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTACCG
Found at i:66162878 original size:24 final size:25
Alignment explanation
Indices: 66162795--66162878 Score: 109
Period size: 26 Copynumber: 3.4 Consensus size: 25
66162785 AGGAAGTGCA
*
66162795 AAAAGGGCTTTTGCCCCAGTTTACC
1 AAAAGGGCTTTTGCCCCAGTTTATC
66162820 GAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTTGCCCCAGTTTATC
* *
66162846 AAAATGGC-TTTGCCCCAG-TTATT
1 AAAAGGGCTTTTGCCCCAGTTTATC
66162869 AAAAGAGGCT
1 AAAAG-GGCT
66162879 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 8 0.15
24 13 0.25
25 7 0.13
26 24 0.46
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATC
Found at i:66163122 original size:31 final size:31
Alignment explanation
Indices: 66163087--66163176 Score: 94
Period size: 38 Copynumber: 2.7 Consensus size: 31
66163077 GTTTACAGTG
66163087 AAGGCTTC-GACCCAGTAATATGAAATATGAA
1 AAGGCTTCAG-CCCAGTAATATGAAATATGAA
66163118 AAGGCTTCAGCCCAGTGTTATGAAATATGAAATATGAA
1 AAGGCTTCAGCCCA--G---T--AATATGAAATATGAA
66163156 AAGGCTTCAGCCCAGT-ATATG
1 AAGGCTTCAGCCCAGTAATATG
66163177 CTGAGATTGA
Statistics
Matches: 51, Mismatches: 0, Indels: 17
0.75 0.00 0.25
Matches are distributed among these distances:
30 5 0.10
31 12 0.24
32 1 0.02
33 2 0.04
36 2 0.04
38 29 0.57
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (31 bp):
AAGGCTTCAGCCCAGTAATATGAAATATGAA
Found at i:66171793 original size:39 final size:40
Alignment explanation
Indices: 66171616--66171797 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
66171606 CCGCACCAAG
* * * * * * *
66171616 GCCTACGGGACTTA-CCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
66171655 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
66171695 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
66171735 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
66171774 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
66171798 CATTCAATTT
Statistics
Matches: 122, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 43 0.35
40 77 0.63
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:66173739 original size:40 final size:40
Alignment explanation
Indices: 66173662--66173879 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
66173652 AAACCAAGTA
* *
66173662 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
66173701 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66173741 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66173781 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
66173821 CCTTCGGGGCTTAGCCC-GAAATTAGTCAGTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
66173861 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
66173880 TTATCATCTG
Statistics
Matches: 165, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 17 0.10
40 147 0.89
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:66178705 original size:29 final size:29
Alignment explanation
Indices: 66178672--66178773 Score: 152
Period size: 29 Copynumber: 3.5 Consensus size: 29
66178662 TGACGAGATC
66178672 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
66178701 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
* *
66178730 GGCACTAAGTGTGCAG-GCTGGAAAAATAC
1 GGCACTAAGTGTGC-GTGCTGGAAATATAT
**
66178759 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
66178774 AGCTCGGAGG
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
28 1 0.01
29 66 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.34, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:66191635 original size:46 final size:44
Alignment explanation
Indices: 66191491--66191702 Score: 158
Period size: 46 Copynumber: 4.6 Consensus size: 44
66191481 GTGATCTAGC
* * * * * * *
66191491 GTAAGACATGTCTAGGACATGCATCGGCCACATTATAAGAGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCTAC--GAGAGGTGCCAGT
* * *
66191537 GTAAGACCATGTCTAGGACATGGCATCGGC-ATTGAGACGAGTGCTAGT
1 GTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGA-G-GTGCCAGT
* ** *
66191585 GTAAGACATGTCTGGGACATGCTTCGGCCT-TTAGATGTAAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGG-CTACGAGAGGT--GCCAGT
* *
66191631 GTAAGACATGTCTAGGACATGCATCGGCTACGAGAGGTGTCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCTACGAGAGGTGCCAGT
66191675 GTAAGACCATGTCTGGGACATGGCATCG
1 GTAAGA-CATGTCTGGGACAT-GCATCG
66191703 ACACAGATAT
Statistics
Matches: 137, Mismatches: 17, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
44 13 0.09
45 15 0.11
46 59 0.43
47 29 0.21
48 21 0.15
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (44 bp):
GTAAGACATGTCTGGGACATGCATCGGCTACGAGAGGTGCCAGT
Found at i:66195848 original size:30 final size:30
Alignment explanation
Indices: 66195790--66195849 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
66195780 TTTCCGAGCC
* *
66195790 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
* *
66195820 TAGGGGCAAAAATGTAATTTTACCAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
66195850 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATACAAAAGTT
Found at i:66206369 original size:12 final size:11
Alignment explanation
Indices: 66206343--66206370 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
66206333 TCAAAAACAT
66206343 AAAAATCGAGC
1 AAAAATCGAGC
66206354 AAAAATCGAGC
1 AAAAATCGAGC
66206365 AAAAAT
1 AAAAAT
66206371 GCACTTACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.61, C:0.14, G:0.14, T:0.11
Consensus pattern (11 bp):
AAAAATCGAGC
Found at i:66207439 original size:39 final size:40
Alignment explanation
Indices: 66207316--66207445 Score: 147
Period size: 39 Copynumber: 3.3 Consensus size: 40
66207306 GACAAGGTTG
* ** * *
66207316 GATCTCATTATATTAT-CTGAGAATCAACAATAGAGGCTA
1 GATCTCATTATATTATCCCGAGAATCTGCAATAAAAGCTA
* * *
66207355 GATCTCATTATATTACCCCGAGAATTTGCAACAAAAGCTA
1 GATCTCATTATATTATCCCGAGAATCTGCAATAAAAGCTA
* * *
66207395 AATCTCATTATATT-TCCCGAGAATCTGGAATAAATGCTA
1 GATCTCATTATATTATCCCGAGAATCTGCAATAAAAGCTA
66207434 GATCTCATTATA
1 GATCTCATTATA
66207446 ATCTATAATA
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 46 0.61
40 29 0.39
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (40 bp):
GATCTCATTATATTATCCCGAGAATCTGCAATAAAAGCTA
Found at i:66207458 original size:10 final size:10
Alignment explanation
Indices: 66207443--66207471 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
66207433 AGATCTCATT
66207443 ATAATCTATA
1 ATAATCTATA
66207453 ATAATCTATA
1 ATAATCTATA
66207463 ATAATCTAT
1 ATAATCTAT
66207472 GTACAAGCGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.41
Consensus pattern (10 bp):
ATAATCTATA
Found at i:66209232 original size:20 final size:20
Alignment explanation
Indices: 66209207--66209244 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
66209197 GATGCATGGT
*
66209207 TTGTTGGTCGGTTTTGTTGA
1 TTGTTGATCGGTTTTGTTGA
*
66209227 TTGTTGATTGGTTTTGTT
1 TTGTTGATCGGTTTTGTT
66209245 AATGTTTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.05, C:0.03, G:0.32, T:0.61
Consensus pattern (20 bp):
TTGTTGATCGGTTTTGTTGA
Found at i:66219231 original size:4 final size:4
Alignment explanation
Indices: 66219222--66219254 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
66219212 TCTATTTATA
*
66219222 TATG TATG TATG TATG TATG CATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG T
66219255 TAGATTAACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.24, C:0.03, G:0.24, T:0.48
Consensus pattern (4 bp):
TATG
Found at i:66230177 original size:46 final size:46
Alignment explanation
Indices: 66230122--66230226 Score: 192
Period size: 46 Copynumber: 2.3 Consensus size: 46
66230112 TTTAATTAAG
66230122 GAAATGAACAAATTGTATAAAATGCAAAAATTGGATTCTAGTAGTTA
1 GAAA-GAACAAATTGTATAAAATGCAAAAATTGGATTCTAGTAGTTA
66230169 GAAAGAACAAATTGTATAAAATGCAAAAATTGGATTCTAGTAGTTA
1 GAAAGAACAAATTGTATAAAATGCAAAAATTGGATTCTAGTAGTTA
*
66230215 GAAAGATCAAAT
1 GAAAGAACAAAT
66230227 AGCTATGGAA
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
46 53 0.93
47 4 0.07
ACGTcount: A:0.49, C:0.07, G:0.17, T:0.28
Consensus pattern (46 bp):
GAAAGAACAAATTGTATAAAATGCAAAAATTGGATTCTAGTAGTTA
Found at i:66232305 original size:29 final size:29
Alignment explanation
Indices: 66232273--66232402 Score: 226
Period size: 29 Copynumber: 4.5 Consensus size: 29
66232263 ATAGTGAATC
66232273 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
66232302 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* *
66232331 CGCACACTTAGTGCTATATATTTTAAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
66232360 CGCACACTTAGTGCTATATA-TTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
66232388 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66232403 GTACAATTTT
Statistics
Matches: 98, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
28 22 0.22
29 76 0.78
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:66232349 original size:58 final size:57
Alignment explanation
Indices: 66232273--66232432 Score: 230
Period size: 58 Copynumber: 2.8 Consensus size: 57
66232263 ATAGTGAATC
*
66232273 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTAAGCTCGCACACTTAGTGCTATATA-TTTCAGCT
* *
66232331 CGCACACTTAGTGCTATATATTTTAAGTTCGCACACTTAGTGCTATATATTTCAGTT
1 CGCACACTTAGTGCTATATATTTTAAGCTCGCACACTTAGTGCTATATATTTCAGCT
* * * *
66232388 CGCACACTTAGTGCTGTACAATTTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TA-TTTTAAGCTCGCACACTTAGTGC
66232433 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
57 24 0.26
58 48 0.52
59 20 0.22
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTAAGCTCGCACACTTAGTGCTATATATTTCAGCT
Found at i:66240213 original size:58 final size:58
Alignment explanation
Indices: 66240137--66240295 Score: 239
Period size: 58 Copynumber: 2.7 Consensus size: 58
66240127 ATAGTGAATC
*
66240137 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTAAGCTCGCACACTTAGTGCTATATATTTTCAGCT
* *
66240195 CGCACACTTAGTGCTATATATTTTAAGTTCGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTAAGCTCGCACACTTAGTGCTATATATTTTCAGCT
* * * *
66240253 CGCACACTTAGTG-TGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTAAGCTCGCACACTTAGTGC
66240296 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
57 3 0.03
58 89 0.97
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.36
Consensus pattern (58 bp):
CGCACACTTAGTGCTATATATTTTAAGCTCGCACACTTAGTGCTATATATTTTCAGCT
Found at i:66240276 original size:29 final size:29
Alignment explanation
Indices: 66240137--66240265 Score: 231
Period size: 29 Copynumber: 4.4 Consensus size: 29
66240127 ATAGTGAATC
66240137 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
66240166 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* *
66240195 CGCACACTTAGTGCTATATATTTTAAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
66240224 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
66240253 CGCACACTTAGTG
1 CGCACACTTAGTG
66240266 TGTACAATTT
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 97 1.00
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:66240286 original size:87 final size:87
Alignment explanation
Indices: 66240137--66240295 Score: 248
Period size: 87 Copynumber: 1.8 Consensus size: 87
66240127 ATAGTGAATC
* * * *
66240137 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATATTTTCAGCTCGCACAC
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAAATTTTAAACCCGCACAC
66240202 TTAGTGCTATATATTTTAAGTT
66 TTAGTGCTATATATTTTAAGTT
* *
66240224 CGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTG-TGTACAATTTTAAACCCGCACA
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATA-AATTTTAAACCCGCACA
66240288 CTTAGTGC
65 CTTAGTGC
66240296 CAATCTTGTC
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
86 3 0.05
87 62 0.95
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.36
Consensus pattern (87 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAAATTTTAAACCCGCACAC
TTAGTGCTATATATTTTAAGTT
Found at i:66242054 original size:93 final size:93
Alignment explanation
Indices: 66241942--66242113 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
66241932 CGCCCATAAG
* *
66241942 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
66242007 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
66242035 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
66242100 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
66242114 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:66242110 original size:46 final size:46
Alignment explanation
Indices: 66241935--66242110 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
66241925 TGTAACCCGC
* * *
66241935 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
66241981 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
66242031 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
66242074 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
66242111 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:66250060 original size:29 final size:27
Alignment explanation
Indices: 66250026--66250128 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
66250016 TACTCGATCA
*
66250026 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
66250055 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
66250084 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
66250113 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
66250129 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:66257038 original size:55 final size:55
Alignment explanation
Indices: 66256912--66257038 Score: 141
Period size: 55 Copynumber: 2.3 Consensus size: 55
66256902 TAAACACGGG
** * * *
66256912 CGTGGTCGAACCTGCCAAAACAACACGGGCGTGCGACACGCCCGTGTGGAAGAAC
1 CGTGGTCGAACCTGTTAAAACAACACAGGCATGCGACACGCCCGTGTGCAAGAAC
* * *
66256967 CGTGGGT-GAACCTGTTAAAACAGCACAGGCATGCGACACGCCCGTGT-CTAGCATC
1 CGT-GGTCGAACCTGTTAAAACAACACAGGCATGCGACACGCCCGTGTGCAAG-AAC
*
66257022 CGTGGTCGAACTTGTTA
1 CGTGGTCGAACCTGTTA
66257039 GATTGACACG
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
54 5 0.08
55 52 0.87
56 3 0.05
ACGTcount: A:0.25, C:0.28, G:0.29, T:0.17
Consensus pattern (55 bp):
CGTGGTCGAACCTGTTAAAACAACACAGGCATGCGACACGCCCGTGTGCAAGAAC
Found at i:66263032 original size:40 final size:40
Alignment explanation
Indices: 66262987--66263116 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
66262977 CGGAATACAA
66262987 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
66263027 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
66263067 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
66263107 CCGGATATAA
1 CCGGATATAA
66263117 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:66263131 original size:40 final size:40
Alignment explanation
Indices: 66262987--66263150 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
66262977 CGGAATACAA
* **
66262987 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
66263027 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
66263067 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
66263107 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
66263147 CCGG
1 CCGG
66263151 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:66268840 original size:24 final size:24
Alignment explanation
Indices: 66268784--66268840 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
66268774 GACGAACAAG
* *
66268784 CTCGTTTAAAAGCTCATTTATTGG
1 CTCGTTTATAAGCTCATTTATTGA
*
66268808 CTCGTTTATAAGCTCATTTTTTGA
1 CTCGTTTATAAGCTCATTTATTGA
66268832 CTCGTTTAT
1 CTCGTTTAT
66268841 TTATTAATGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (24 bp):
CTCGTTTATAAGCTCATTTATTGA
Found at i:66269115 original size:23 final size:23
Alignment explanation
Indices: 66269071--66269116 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
66269061 ACATTATTCG
* *
66269071 TGAACATGTTCAATTAAGTTAAA
1 TGAACATGTTCAATAAAATTAAA
66269094 TGAACATGTTC-ATAAATATTAAA
1 TGAACATGTTCAATAAA-ATTAAA
66269117 GAAACGAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.46, C:0.09, G:0.11, T:0.35
Consensus pattern (23 bp):
TGAACATGTTCAATAAAATTAAA
Found at i:66271349 original size:67 final size:67
Alignment explanation
Indices: 66271240--66271371 Score: 210
Period size: 67 Copynumber: 2.0 Consensus size: 67
66271230 ATGTGGCTGT
* *
66271240 ATTGGACGCAAGACTCAGAAATGTCCGACTCAAGTGAATCATCATGATGCAAATGACTCAAATCT
1 ATTGGACACAAGACTCAGAAATGTCCAACTCAAGTGAATCATCATGATGCAAATGACTCAAATCT
66271305 GC
66 GC
* * * *
66271307 ATTGGACACGAGACTCAGCAATGTCTAACTCAAGTGATTCATCATGATGCAAATGACTCAAATCT
1 ATTGGACACAAGACTCAGAAATGTCCAACTCAAGTGAATCATCATGATGCAAATGACTCAAATCT
66271372 TCAATTTGGG
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
67 59 1.00
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (67 bp):
ATTGGACACAAGACTCAGAAATGTCCAACTCAAGTGAATCATCATGATGCAAATGACTCAAATCT
GC
Found at i:66285350 original size:16 final size:16
Alignment explanation
Indices: 66285329--66285363 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
66285319 GTAGCACAAC
*
66285329 TTTCGGCTTTTCAGCT
1 TTTCGGCGTTTCAGCT
66285345 TTTCGGCGTTTCAGCT
1 TTTCGGCGTTTCAGCT
66285361 TTT
1 TTT
66285364 TCCGTTTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.06, C:0.23, G:0.20, T:0.51
Consensus pattern (16 bp):
TTTCGGCGTTTCAGCT
Found at i:66286625 original size:16 final size:16
Alignment explanation
Indices: 66286601--66286632 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
66286591 AAGTTCAGGA
*
66286601 TTTCGGGATTTTTGGG
1 TTTCAGGATTTTTGGG
66286617 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
66286633 GCGTTACATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:66293155 original size:17 final size:18
Alignment explanation
Indices: 66293118--66293184 Score: 82
Period size: 18 Copynumber: 3.8 Consensus size: 18
66293108 CTTGGCCCAT
66293118 TGCAGTAACAGTAAACAG
1 TGCAGTAACAGTAAACAG
*
66293136 TGCAGTAACAGT-ATCAG
1 TGCAGTAACAGTAAACAG
* *
66293153 TGCAGTTATAGTAAACAG
1 TGCAGTAACAGTAAACAG
* *
66293171 TGTAGTAATAGTAA
1 TGCAGTAACAGTAA
66293185 GCAATATGCA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
17 14 0.33
18 28 0.67
ACGTcount: A:0.40, C:0.12, G:0.22, T:0.25
Consensus pattern (18 bp):
TGCAGTAACAGTAAACAG
Found at i:66293550 original size:27 final size:27
Alignment explanation
Indices: 66293513--66293727 Score: 195
Period size: 27 Copynumber: 8.0 Consensus size: 27
66293503 AAACATACAT
* **
66293513 CACATAGGGGCAAAACAGTCATCCTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
66293540 CGCATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * *
66293567 CTCATAAGGACAAAACTGTTATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
66293594 CACATAAGGGC-AAACCGTTATTTTAA
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
66293620 CACATAAGGAG-AAAACAATCATTTTGC
1 CACATAAGG-GCAAAACAGTCATTTTAC
* *
66293647 CACATAAGGGCAAAATC-GTCAATTTGC
1 CACATAAGGGCAAAA-CAGTCATTTTAC
* *
66293674 CACATAAGGGCAAAACAATCATTTTGC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
66293701 CATATTAGGGCAAAACCA-TCATTTTAC
1 CACATAAGGGCAAAA-CAGTCATTTTAC
66293728 TTTACAGGGT
Statistics
Matches: 156, Mismatches: 26, Indels: 12
0.80 0.13 0.06
Matches are distributed among these distances:
26 24 0.15
27 129 0.83
28 3 0.02
ACGTcount: A:0.39, C:0.21, G:0.15, T:0.25
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:66293748 original size:26 final size:27
Alignment explanation
Indices: 66293719--66293780 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
66293709 GGCAAAACCA
*
66293719 TCATTTTACTTTACA-GGGTATTACAG
1 TCATTTTACTCTACATGGGTATTACAG
66293745 TCATTTTACTCTACATGGGTATTACAG
1 TCATTTTACTCTACATGGGTATTACAG
66293772 TCATTTTAC
1 TCATTTTAC
66293781 CCTATGGGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 14 0.41
27 20 0.59
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.44
Consensus pattern (27 bp):
TCATTTTACTCTACATGGGTATTACAG
Found at i:66293791 original size:27 final size:27
Alignment explanation
Indices: 66293734--66293834 Score: 105
Period size: 27 Copynumber: 3.7 Consensus size: 27
66293724 TTACTTTACA
* ***
66293734 GGGTATTACAGTCATTTTACTCTACAT
1 GGGTATTACAGTCATTTTACCCTATGG
66293761 GGGTATTACAGTCATTTTACCCTATGG
1 GGGTATTACAGTCATTTTACCCTATGG
*** *
66293788 GGGTATTTTGGTCATTTTACCCTGTGG
1 GGGTATTACAGTCATTTTACCCTATGG
*
66293815 GGGTATTTC-GATCATTTTAC
1 GGGTATTACAG-TCATTTTAC
66293835 AAGTAAATAA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.02
27 63 0.98
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.42
Consensus pattern (27 bp):
GGGTATTACAGTCATTTTACCCTATGG
Found at i:66298056 original size:30 final size:30
Alignment explanation
Indices: 66298020--66298077 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
66298010 CCGAGCCTAG
66298020 GGGCAAAAATGTAAATATGAAAAAGTTTAA
1 GGGCAAAAATGTAAATATGAAAAAGTTTAA
* * * *
66298050 GGGCAAAATTGTAATTTTGCAAAAGTTT
1 GGGCAAAAATGTAAATATGAAAAAGTTT
66298078 GAGTTAAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.45, C:0.05, G:0.21, T:0.29
Consensus pattern (30 bp):
GGGCAAAAATGTAAATATGAAAAAGTTTAA
Found at i:66298860 original size:68 final size:66
Alignment explanation
Indices: 66298788--66298959 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
66298778 CATCATGTGT
* * * *
66298788 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
66298851 TGTAG
62 TGTAG
** * *
66298856 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
66298921 AG
65 AG
* * * *
66298923 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
66298960 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:66298893 original size:64 final size:64
Alignment explanation
Indices: 66298812--66298995 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
66298802 AGACATTATG
* * *
66298812 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
66298876 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
66298941 AA
63 AA
* * *
66298943 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
66298996 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:66300925 original size:28 final size:28
Alignment explanation
Indices: 66300885--66300941 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
66300875 GACCATTTTG
66300885 TTTAAAATGAAGTATTCTCCAACCGAGC
1 TTTAAAATGAAGTATTCTCCAACCGAGC
66300913 TTTAAAATGAAGTATTCTCCAACCGAGC
1 TTTAAAATGAAGTATTCTCCAACCGAGC
66300941 T
1 T
66300942 ACATCTGACC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (28 bp):
TTTAAAATGAAGTATTCTCCAACCGAGC
Found at i:66303310 original size:68 final size:64
Alignment explanation
Indices: 66303194--66303452 Score: 233
Period size: 68 Copynumber: 3.9 Consensus size: 64
66303184 TGGATGATAC
** * * *
66303194 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTAC
1 AGATA-TATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGCTAC
66303258 AAG
64 --G
* *
66303261 ACATTATGATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTAGACAAGAGAGCTA
1 AGA-TAT-ATGTAGCTAGGTCACATGGGTGGTACTGA-GTGTACACCATGTAGACAAGAGAGCTA
66303325 CG
63 CG
* * * *
66303327 GGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAG-G-ACACCATGTAGACAAGAGAGC
1 AGATATATGTAGCTAGGTCACATGGGTGG-T--A-CTG-AGTGTACACCATGTAGACAAGAGAGC
66303390 TACG
61 TACG
* * *
66303394 AGATAAAT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGT-GTACAAGAGAGC
1 AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGC
66303453 CGAACTATAT
Statistics
Matches: 159, Mismatches: 20, Indels: 30
0.76 0.10 0.14
Matches are distributed among these distances:
61 2 0.01
62 4 0.03
63 19 0.12
64 20 0.13
65 5 0.03
66 19 0.12
67 36 0.23
68 51 0.32
69 2 0.01
70 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.24
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:66313980 original size:13 final size:13
Alignment explanation
Indices: 66313962--66314018 Score: 78
Period size: 13 Copynumber: 4.4 Consensus size: 13
66313952 TCATTGGGTG
66313962 GAAATGGATATAT
1 GAAATGGATATAT
* * *
66313975 GAAATGGTTCTAC
1 GAAATGGATATAT
*
66313988 AAAATGGATATAT
1 GAAATGGATATAT
66314001 GAAATGGATATAT
1 GAAATGGATATAT
66314014 GAAAT
1 GAAAT
66314019 AAACATTTAA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 36 1.00
ACGTcount: A:0.46, C:0.04, G:0.21, T:0.30
Consensus pattern (13 bp):
GAAATGGATATAT
Found at i:66314057 original size:26 final size:26
Alignment explanation
Indices: 66314000--66314058 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
66313990 AATGGATATA
* *
66314000 TGAAATGGATATATGAAATAAACATT
1 TGAAATGGATATATGAAATAAAAATG
*
66314026 TAAAATGGATACT-TGAAATAAAAATG
1 TGAAATGGATA-TATGAAATAAAAATG
66314052 TGAAATG
1 TGAAATG
66314059 TTAAATGGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.51, C:0.03, G:0.17, T:0.29
Consensus pattern (26 bp):
TGAAATGGATATATGAAATAAAAATG
Found at i:66316356 original size:29 final size:29
Alignment explanation
Indices: 66316292--66316359 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 29
66316282 GTGTGGCTAA
*
66316292 CCCA-TGTGCCCTAGGATTGGCCGCACAC
1 CCCAGTGTGCCCTAGGATTGGCCACACAC
* * *
66316320 CCCCGTGTGCCCTAGGATTGGCCACATAT
1 CCCAGTGTGCCCTAGGATTGGCCACACAC
*
66316349 GCCAGTGTGCC
1 CCCAGTGTGCC
66316360 AAGGCTGTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.16, C:0.37, G:0.26, T:0.21
Consensus pattern (29 bp):
CCCAGTGTGCCCTAGGATTGGCCACACAC
Found at i:66323252 original size:48 final size:48
Alignment explanation
Indices: 66323195--66323326 Score: 219
Period size: 48 Copynumber: 2.8 Consensus size: 48
66323185 GTGTGAATTA
* * * *
66323195 TACCTTGATTTGGCTTCGGGCCAAGGTATAGGTATTTCGGGGATGAGT
1 TACCTTGATTTGGCTTCGGGCCATGGTATAGGTACTCCGGGGATAAGT
*
66323243 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGGGATAAGT
1 TACCTTGATTTGGCTTCGGGCCATGGTATAGGTACTCCGGGGATAAGT
66323291 TACCTTGATTTGGCTTCGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTTCGGGCCATGGTATAGGTACT
66323327 TATCGATTGA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 78 1.00
ACGTcount: A:0.19, C:0.17, G:0.31, T:0.33
Consensus pattern (48 bp):
TACCTTGATTTGGCTTCGGGCCATGGTATAGGTACTCCGGGGATAAGT
Found at i:66328243 original size:39 final size:40
Alignment explanation
Indices: 66328189--66328364 Score: 254
Period size: 39 Copynumber: 4.5 Consensus size: 40
66328179 AAACCAAGTA
* *
66328189 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
66328228 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66328268 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
66328307 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
66328346 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
66328365 TTATCATCCG
Statistics
Matches: 126, Mismatches: 6, Indels: 9
0.89 0.04 0.06
Matches are distributed among these distances:
38 1 0.01
39 87 0.69
40 38 0.30
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:66328356 original size:79 final size:80
Alignment explanation
Indices: 66328189--66328364 Score: 254
Period size: 79 Copynumber: 2.2 Consensus size: 80
66328179 AAACCAAGTA
* * *
66328189 CCTTCGGGATTTAG-CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
66328253 TAACTCGCACAAATG
66 TAACTAGCACAAATG
66328268 CCTTC-GGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA-ATT
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-T
*
66328329 AGTCACTAGCACAAATG
64 AGTAACTAGCACAAATG
66328346 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
66328365 TTATCATCCG
Statistics
Matches: 88, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
77 1 0.01
78 39 0.44
79 48 0.55
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTAGCACAAATG
Found at i:66337605 original size:39 final size:40
Alignment explanation
Indices: 66337427--66337609 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
66337417 CCGCACCAAG
* * * * * * * *
66337427 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
66337467 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
66337507 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
66337547 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
66337586 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
66337610 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:66345686 original size:39 final size:40
Alignment explanation
Indices: 66345508--66345690 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
66345498 CCGCACCAAG
* * * * * * * *
66345508 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
66345548 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
66345588 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
66345628 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
66345667 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
66345691 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:66353230 original size:68 final size:70
Alignment explanation
Indices: 66353158--66353355 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
66353148 ACACCCTGTA
* * * *
66353158 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
66353220 ATAAAT
65 ATAAAT
*
66353226 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
66353291 ATAAAT
65 ATAAAT
*
66353297 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
66353356 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:66353269 original size:41 final size:41
Alignment explanation
Indices: 66353224--66353341 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
66353214 TGAAAGATAA
66353224 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
66353265 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
66353295 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
66353336 ATGTAG
1 ATGTAG
66353342 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:66353281 original size:71 final size:71
Alignment explanation
Indices: 66353192--66353355 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
66353182 GAGATGTATC
66353192 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
66353257 AGGACA
66 AGGACA
66353263 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
66353328 AGGACA
66 AGGACA
66353334 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
66353356 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:66359134 original size:40 final size:41
Alignment explanation
Indices: 66359076--66359226 Score: 152
Period size: 40 Copynumber: 3.8 Consensus size: 41
66359066 ATTTGAATGA
* *
66359076 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTC
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGCTGAGAAATTC
* *** *
66359116 TATCCGGGTTAAGACCCGAAGGCAATTGTGCT-AGTGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCTGAG-AAATTC
*
66359157 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCTGAGAAATTC
*
66359196 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
66359227 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
39 5 0.05
40 81 0.89
41 5 0.05
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCTGAGAAATTC
Found at i:66359240 original size:40 final size:40
Alignment explanation
Indices: 66359116--66359242 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
66359106 CTGGAAATTC
* * * * *
66359116 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
* * ** *
66359156 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
66359196 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
66359236 TATCCGG
1 TATCCGG
66359243 TTATGTTCCG
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
Found at i:66365449 original size:39 final size:39
Alignment explanation
Indices: 66365393--66365650 Score: 338
Period size: 39 Copynumber: 6.6 Consensus size: 39
66365383 ATAATGGAGA
* *
66365393 ATTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * *
66365432 GTTATATCTGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * * *
66365471 ATTATATCCGGGATAAGTCCCAAAGGAATTCGTACTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
*
66365510 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* *
66365549 GTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGCT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * *
66365588 ATTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTAGT
1 ATTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGT
*
66365627 ATTATATCTGGGCTTAAAGTCCCG
1 ATTATATCCGGGC-T-AAGTCCCG
66365651 CATGCTTTGT
Statistics
Matches: 193, Mismatches: 24, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
39 171 0.89
40 22 0.11
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.31
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
Found at i:66365599 original size:117 final size:118
Alignment explanation
Indices: 66365393--66365609 Score: 382
Period size: 117 Copynumber: 1.8 Consensus size: 118
66365383 ATAATGGAGA
* *
66365393 ATTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCTGGGCTAAGTCCCGAAGG
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
*
66365458 AATTCGTGCTGGTATTATATCCGGGAT-AAGTCCCAAAGGAATTCGTACTGGT
66 AATTCGTGCTGCTATTATATCCGGGATAAAGTCCCAAAGGAATTCGTACTGGT
66365510 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
* *
66365575 CATTCGTGCTGCTATTATATCCGGGCTAAAGTCCC
66 AATTCGTGCTGCTATTATATCCGGGATAAAGTCCC
66365610 GCAGGCTTTG
Statistics
Matches: 94, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
117 87 0.93
118 7 0.07
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (118 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
AATTCGTGCTGCTATTATATCCGGGATAAAGTCCCAAAGGAATTCGTACTGGT
Found at i:66365629 original size:117 final size:117
Alignment explanation
Indices: 66365393--66365650 Score: 374
Period size: 117 Copynumber: 2.2 Consensus size: 117
66365383 ATAATGGAGA
* *
66365393 ATTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCTGGGCTAAGTCCCGAAGG
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
* *
66365458 AATTCGTGCTGGTATTATATCCGGGATAAGTCCCAAAGGAATTCGTACTGGT
66 AATTCGTGCTGCTATTATATCCGGGATAAGTCCCAAAGGAATTCGTACTAGT
66365510 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
* * ** * * *
66365575 CATTCGTGCTGCTATTATATCCGGGCTAAAGTCCCGCAGG-CTTTGTGCTAGT
66 AATTCGTGCTGCTATTATATCCGGGAT-AAGTCCCAAAGGAATTCGTACTAGT
*
66365627 ATTATATCTGGGCTTAAAGTCCCG
1 ATTATATCCGGGC-T-AAGTCCCG
66365651 CATGCTTTGT
Statistics
Matches: 126, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
117 107 0.85
118 11 0.09
119 8 0.06
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.31
Consensus pattern (117 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
AATTCGTGCTGCTATTATATCCGGGATAAGTCCCAAAGGAATTCGTACTAGT
Found at i:66368783 original size:29 final size:29
Alignment explanation
Indices: 66368741--66369173 Score: 408
Period size: 29 Copynumber: 14.9 Consensus size: 29
66368731 AGTGTGCTAA
* * *
66368741 TGATGGTTGAAACCATCCCTTTTCATATT
1 TGATGGTCGACACCATCCCTTTTCATAGT
* * *
66368770 TGATGGTTGAAACCGTCCCTTTTCATTAAG-
1 TGATGGTCGACACCATCCCTTTTCA-T-AGT
* *
66368800 TGATGGTAGTCACCATCCCTTTTCATAGT
1 TGATGGTCGACACCATCCCTTTTCATAGT
*
66368829 TGATGGTCGTCACCATCCCTTTTCATAGT
1 TGATGGTCGACACCATCCCTTTTCATAGT
* * * * *
66368858 TGATAGTTGAAACTATCCCTTTTCATAAT
1 TGATGGTCGACACCATCCCTTTTCATAGT
** * *
66368887 CAATGGTCGTCACCATCCCTATTCATAGT
1 TGATGGTCGACACCATCCCTTTTCATAGT
* * * * * *
66368916 TGATGATCAAAACTATCTCTTTCCATAGT
1 TGATGGTCGACACCATCCCTTTTCATAGT
**
66368945 CAATGGTC-ATCACCATCCCTTTTCATAGT
1 TGATGGTCGA-CACCATCCCTTTTCATAGT
66368974 TGATGGTC-ATCACCATCCCTTTTCATAGT
1 TGATGGTCGA-CACCATCCCTTTTCATAGT
*
66369003 TGATGGTCGTCACCATCCCTTTTCATAGT
1 TGATGGTCGACACCATCCCTTTTCATAGT
* * *
66369032 TGATGGTCGTCATCATCCCTTTTTATAGT
1 TGATGGTCGACACCATCCCTTTTCATAGT
* * *
66369061 TGATGGTCGTCACCATTCTTTTTCATAGT
1 TGATGGTCGACACCATCCCTTTTCATAGT
* * * * *
66369090 TGA-GAGTCAAAACTATCCTTTTTCATAAT
1 TGATG-GTCGACACCATCCCTTTTCATAGT
*
66369119 TGATAGTC-ATCACCATCCCTTTTCATAGT
1 TGATGGTCGA-CACCATCCCTTTTCATAGT
* *
66369148 TGATGGTCGTCACCATCCTTTTTCAT
1 TGATGGTCGACACCATCCCTTTTCAT
66369174 TTATCGATGA
Statistics
Matches: 333, Mismatches: 62, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
28 5 0.02
29 305 0.92
30 22 0.07
31 1 0.00
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (29 bp):
TGATGGTCGACACCATCCCTTTTCATAGT
Found at i:66370825 original size:14 final size:14
Alignment explanation
Indices: 66370806--66370832 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
66370796 TGTAGACTGC
66370806 AAACCACTTGTATT
1 AAACCACTTGTATT
66370820 AAACCACTTGTAT
1 AAACCACTTGTAT
66370833 CAATACAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (14 bp):
AAACCACTTGTATT
Found at i:66371736 original size:31 final size:28
Alignment explanation
Indices: 66371701--66371768 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 28
66371691 ATGCTATATT
*
66371701 TGGTACCTATACTTTTACAAAATGTCTAATG
1 TGGTACCTATAC--TTAC-AAATGTCTAATA
* *
66371732 TGGTACTTGTACTTACAAATGTCTAATA
1 TGGTACCTATACTTACAAATGTCTAATA
*
66371760 TTGTACCTA
1 TGGTACCTA
66371769 AACTATAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
28 17 0.55
29 4 0.13
31 10 0.32
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (28 bp):
TGGTACCTATACTTACAAATGTCTAATA
Found at i:66371880 original size:20 final size:21
Alignment explanation
Indices: 66371828--66371880 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 21
66371818 TTTATGTGAT
66371828 TATGTATTTTGAAAATACTTAA
1 TATGTATTTT-AAAATACTTAA
* *
66371850 TAT-AATATTTAAACTA-TTAA
1 TATGTAT-TTTAAAATACTTAA
66371870 TATGTATTTTA
1 TATGTATTTTA
66371881 TTATGGTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
20 11 0.42
21 9 0.35
22 6 0.23
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.49
Consensus pattern (21 bp):
TATGTATTTTAAAATACTTAA
Found at i:66374781 original size:24 final size:23
Alignment explanation
Indices: 66374750--66374795 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
66374740 CTATATTGTA
*
66374750 AAGAAGAAGATGAAGCTTTTAGTG
1 AAGAAGAAAATGAAG-TTTTAGTG
*
66374774 AAGAAGAAAATGGAGTTTTAGT
1 AAGAAGAAAATGAAGTTTTAGT
66374796 TAATCATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.43, C:0.02, G:0.28, T:0.26
Consensus pattern (23 bp):
AAGAAGAAAATGAAGTTTTAGTG
Found at i:66383502 original size:40 final size:41
Alignment explanation
Indices: 66383424--66383530 Score: 130
Period size: 40 Copynumber: 2.7 Consensus size: 41
66383414 TGATGACATA
66383424 TCGGCTAAATATGGCACTTAGTGTGC-AGTTCGGTATAGCT
1 TCGGCTAAATATGGCACTTAGTGTGCGAGTTCGGTATAGCT
* *
66383464 TCGGCTAAATTTGGCACTTAGTGTGCGA-TTTGAG-ATAGCT
1 TCGGCTAAATATGGCACTTAGTGTGCGAGTTCG-GTATAGCT
* ** *
66383504 TCAGCTATGTATAGCACTTAGTGTGCG
1 TCGGCTAAATATGGCACTTAGTGTGCG
66383531 GGACATCAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
40 56 0.97
41 2 0.03
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (41 bp):
TCGGCTAAATATGGCACTTAGTGTGCGAGTTCGGTATAGCT
Found at i:66397739 original size:29 final size:29
Alignment explanation
Indices: 66397697--66397780 Score: 141
Period size: 29 Copynumber: 2.9 Consensus size: 29
66397687 TGCCGTATTT
**
66397697 TTTCCAGCTTGCACACTTAGTGCCAAATA
1 TTTCCAGCACGCACACTTAGTGCCAAATA
*
66397726 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCAAATA
66397755 TTTCCAGCACGCACACTTAGTGCCAA
1 TTTCCAGCACGCACACTTAGTGCCAA
66397781 TCTCGACACC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.27
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCAAATA
Found at i:66413133 original size:40 final size:40
Alignment explanation
Indices: 66413074--66413265 Score: 204
Period size: 40 Copynumber: 4.8 Consensus size: 40
66413064 CAATTGAATG
* * * *
66413074 ATATCTGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAATT
* * * *
66413114 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAATT
* * * **
66413154 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAATT
* * * **
66413194 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAATT
* *
66413234 CTATCCGGGCTAAGACCCGAAGGCATTCGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
66413266 ATGTGGTTAT
Statistics
Matches: 127, Mismatches: 25, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 127 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAATT
Found at i:66413280 original size:80 final size:79
Alignment explanation
Indices: 66413080--66413281 Score: 228
Period size: 80 Copynumber: 2.5 Consensus size: 79
66413070 AATGATATCT
* * ** * ** *
66413080 GGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAATTGTG
1 GGGCTAAGACCCGAAGGCATTCGTGCGAGTGGTTATATCCGGGCTAAGACCCGAAGGCAATTGTG
*
66413145 CTAGTGACTACATCC
66 CAAGTGACTA-ATCC
* * * *
66413160 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGCTAATACCCGAAGGCATTTGTG
1 GGGCTAAGACCCGAAGGCATTCGTGCGAGTGGTTATATCCGGGCTAAGACCCGAAGGCAATTGTG
*
66413225 CAAGTCGTTCT-ATCC
66 CAAGT-G-ACTAATCC
66413240 GGGCTAAGACCCGAAGGCATTCGTGC-ATGTGGTTATATCCGG
1 GGGCTAAGACCCGAAGGCATTCGTGCGA-GTGGTTATATCCGG
66413282 TCGTATTCCG
Statistics
Matches: 104, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
79 1 0.01
80 100 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
GGGCTAAGACCCGAAGGCATTCGTGCGAGTGGTTATATCCGGGCTAAGACCCGAAGGCAATTGTG
CAAGTGACTAATCC
Found at i:66416347 original size:21 final size:21
Alignment explanation
Indices: 66416321--66416361 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
66416311 AATGGTTATG
*
66416321 GATGATTTAAGAGTGACTTAA
1 GATGATTTAAGAGTCACTTAA
*
66416342 GATGATTTACGAGTCACTTA
1 GATGATTTAAGAGTCACTTA
66416362 TTATTTAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.34
Consensus pattern (21 bp):
GATGATTTAAGAGTCACTTAA
Found at i:66419695 original size:18 final size:19
Alignment explanation
Indices: 66419662--66419701 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
66419652 CAGTCGTGGG
*
66419662 CCAAGGTGGTGTTCAGCCA
1 CCAAGGTGGTGGTCAGCCA
*
66419681 CCAAGG-GGTGGTCAGCTA
1 CCAAGGTGGTGGTCAGCCA
66419699 CCA
1 CCA
66419702 CCAAGAGGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.23, C:0.28, G:0.33, T:0.17
Consensus pattern (19 bp):
CCAAGGTGGTGGTCAGCCA
Found at i:66421824 original size:28 final size:28
Alignment explanation
Indices: 66421759--66421857 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
66421749 TCATGAATTG
* * *
66421759 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
66421788 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
66421816 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
66421844 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
66421858 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:66425808 original size:40 final size:39
Alignment explanation
Indices: 66425763--66425892 Score: 127
Period size: 40 Copynumber: 3.3 Consensus size: 39
66425753 CGGAATATAA
66425763 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
66425803 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
66425843 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
*
66425883 CCAGATATAA
1 CCGGATATAA
66425893 TTTCCAGCAT
Statistics
Matches: 71, Mismatches: 15, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
38 1 0.01
40 68 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:66425913 original size:80 final size:80
Alignment explanation
Indices: 66425779--66425928 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
66425769 ATAACCATGT
* *
66425779 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCAGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
66425843 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
66425859 GCACAATTGCCTTCGGGTCTTAACCCAGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCAGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
66425922 CCCGGAT
64 CCCGGAT
66425929 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 3 0.05
80 56 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCAGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:66432692 original size:28 final size:28
Alignment explanation
Indices: 66432627--66432725 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
66432617 TCATGAATTG
* * *
66432627 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
66432656 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
66432684 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
66432712 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
66432726 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:66439472 original size:15 final size:14
Alignment explanation
Indices: 66439452--66439481 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
66439442 ATGTTCGAGC
66439452 ATTTATGAATGCATG
1 ATTTATGAATG-ATG
66439467 ATTTATGAATGATG
1 ATTTATGAATGATG
66439481 A
1 A
66439482 GGAGTGCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.37, C:0.03, G:0.20, T:0.40
Consensus pattern (14 bp):
ATTTATGAATGATG
Found at i:66455594 original size:20 final size:20
Alignment explanation
Indices: 66455569--66455620 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
66455559 GAGGCAATGC
66455569 ACACGCCCGTGTACTTGGGA
1 ACACGCCCGTGTACTTGGGA
* *
66455589 ACACGCCTGTGTGCTTGGGA
1 ACACGCCCGTGTACTTGGGA
66455609 ACACGCCCGTGT
1 ACACGCCCGTGT
66455621 CCCTTACCCG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.17, C:0.31, G:0.31, T:0.21
Consensus pattern (20 bp):
ACACGCCCGTGTACTTGGGA
Found at i:66459167 original size:13 final size:13
Alignment explanation
Indices: 66459151--66459180 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
66459141 CAAGACACAC
*
66459151 GCCCATGTGTCTT
1 GCCCATGTCTCTT
66459164 GCCCATGTCTCTT
1 GCCCATGTCTCTT
66459177 GCCC
1 GCCC
66459181 GTACTCGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.40, G:0.20, T:0.33
Consensus pattern (13 bp):
GCCCATGTCTCTT
Found at i:66470660 original size:28 final size:28
Alignment explanation
Indices: 66470620--66470687 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
66470610 TAGATGTACT
*
66470620 ATTATACCCCTATGTATGCAAAATTACC
1 ATTATACCCCTATGTATGCAAAATGACC
66470648 ATTATACCCCTATGTATGCAAAATGACC
1 ATTATACCCCTATGTATGCAAAATGACC
*
66470676 TTTATACCCCTA
1 ATTATACCCCTA
66470688 GGGTTAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.34, C:0.26, G:0.07, T:0.32
Consensus pattern (28 bp):
ATTATACCCCTATGTATGCAAAATGACC
Found at i:66470840 original size:26 final size:27
Alignment explanation
Indices: 66470793--66470880 Score: 126
Period size: 26 Copynumber: 3.2 Consensus size: 27
66470783 AGGAAGCGTC
66470793 CTGGTGGCTA-TGCCACAAATATCTGTT
1 CTGGTGGC-ACTGCCACAAATATCTGTT
*
66470820 CTGGTGGC-CTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
66470846 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
66470875 CTGGTG
1 CTGGTG
66470881 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
26 24 0.44
27 15 0.27
28 9 0.16
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:66471366 original size:19 final size:19
Alignment explanation
Indices: 66471342--66471380 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
66471332 TTTTAATTAT
* *
66471342 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
66471361 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
66471380 T
1 T
66471381 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:66478506 original size:28 final size:28
Alignment explanation
Indices: 66478464--66478530 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
66478454 TAGATGTACT
*
66478464 ATTATA-CCCTATGTATGCAAAATTACC
1 ATTATACCCCTATGTATGCAAAATGACC
66478491 ATTATACCCCTATGTATGCAAAATGACC
1 ATTATACCCCTATGTATGCAAAATGACC
*
66478519 TTTATACCCCTA
1 ATTATACCCCTA
66478531 GGGTTAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
27 6 0.16
28 31 0.84
ACGTcount: A:0.34, C:0.25, G:0.07, T:0.33
Consensus pattern (28 bp):
ATTATACCCCTATGTATGCAAAATGACC
Found at i:66478689 original size:26 final size:27
Alignment explanation
Indices: 66478636--66478724 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
66478626 AGGAAGCGTC
66478636 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
*
66478664 CTGGTGGC-CTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
66478690 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
66478719 CTGGTG
1 CTGGTG
66478725 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
26 16 0.29
27 15 0.27
28 17 0.31
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:66478735 original size:29 final size:27
Alignment explanation
Indices: 66478636--66478724 Score: 117
Period size: 26 Copynumber: 3.2 Consensus size: 27
66478626 AGGAAGCGTC
* *
66478636 CTGGTGGCTATGCCACAAATTATCTGTT
1 CTGGTGGC-CTGCCACAAAATATCTGTT
*
66478664 CTGGTGGCCTGCCAC-ATATATCTGTT
1 CTGGTGGCCTGCCACAAAATATCTGTT
66478690 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGC-CTGCCACAAAATATCTGT-T
66478719 CTGGTG
1 CTGGTG
66478725 ACTCTGTCAC
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
26 17 0.31
27 13 0.24
28 17 0.31
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGGTGGCCTGCCACAAAATATCTGTT
Found at i:66479212 original size:19 final size:19
Alignment explanation
Indices: 66479188--66479226 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
66479178 TTTTAATTAT
* *
66479188 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
66479207 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
66479226 T
1 T
66479227 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:66481871 original size:39 final size:39
Alignment explanation
Indices: 66481815--66482072 Score: 374
Period size: 39 Copynumber: 6.6 Consensus size: 39
66481805 ATAATGGAGA
*
66481815 ATTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGT
* * * *
66481854 GTTATATCCAGGCTAAGTCCCGAAGGAATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGT
* * *
66481893 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTTCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGT
66481932 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGT
* **
66481971 GTTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGT
*
66482010 ATTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGT
1 ATTATATCCGGGCT-AAGTCCCGAAGGCATTTGTGCTGGT
66482049 ATTATATCCGGGCATAAAGTCCCG
1 ATTATATCCGGGC-T-AAGTCCCG
66482073 CATGCTTTGT
Statistics
Matches: 199, Mismatches: 18, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
39 177 0.89
40 22 0.11
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGT
Found at i:66484485 original size:40 final size:41
Alignment explanation
Indices: 66484427--66484577 Score: 152
Period size: 40 Copynumber: 3.8 Consensus size: 41
66484417 ATTTGAATGA
* *
66484427 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTC
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGCTGAGAAATTC
* *** *
66484467 TATCCGGGTTAAGACCCGAAGGCAATTGTGCT-AGTGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCTGAG-AAATTC
*
66484508 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCTGAGAAATTC
*
66484547 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
66484578 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
39 5 0.05
40 81 0.89
41 5 0.05
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCTGAGAAATTC
Found at i:66484591 original size:40 final size:40
Alignment explanation
Indices: 66484467--66484593 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
66484457 CTGGAAATTC
* * * * *
66484467 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
* * ** *
66484507 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
66484547 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
66484587 TATCCGG
1 TATCCGG
66484594 TTATGTTCCG
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
Found at i:66489243 original size:68 final size:70
Alignment explanation
Indices: 66489171--66489368 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
66489161 ACACCCTGTA
* * * *
66489171 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
66489233 ATAAAT
65 ATAAAT
*
66489239 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
66489304 ATAAAT
65 ATAAAT
*
66489310 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
66489369 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Done.