Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 218 of 410
Found at i:66826260 original size:27 final size:27
Alignment explanation
Indices: 66826221--66826273 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
66826211 CATCAGACAG
66826221 GGGCAAAACAGTCATCTTACCATATAA
1 GGGCAAAACAGTCATCTTACCATATAA
* * *
66826248 GGGCAAAATAGTCATTTTATCATATA
1 GGGCAAAACAGTCATCTTACCATATA
66826274 TAAGGGATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (27 bp):
GGGCAAAACAGTCATCTTACCATATAA
Found at i:66830795 original size:66 final size:66
Alignment explanation
Indices: 66830719--66830847 Score: 249
Period size: 66 Copynumber: 2.0 Consensus size: 66
66830709 GATGTATTGA
*
66830719 TCATATGTTTAGGTATGATTTTAGTTTAAGTTTTGGTATGAATTGATTGATGAATTGAGATTTTG
1 TCATATGTTTAGGCATGATTTTAGTTTAAGTTTTGGTATGAATTGATTGATGAATTGAGATTTTG
66830784 T
66 T
66830785 TCATATGTTTAGGCATGATTTTAGTTTAAGTTTTGGTATGAATTGATTGATGAATTGAGATTT
1 TCATATGTTTAGGCATGATTTTAGTTTAAGTTTTGGTATGAATTGATTGATGAATTGAGATTT
66830848 GAAATGATTG
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.26, C:0.02, G:0.22, T:0.49
Consensus pattern (66 bp):
TCATATGTTTAGGCATGATTTTAGTTTAAGTTTTGGTATGAATTGATTGATGAATTGAGATTTTG
T
Found at i:66831764 original size:38 final size:38
Alignment explanation
Indices: 66831713--66831827 Score: 203
Period size: 38 Copynumber: 3.0 Consensus size: 38
66831703 CTCCAAAATG
66831713 TCGTCTTCCACATTGTTGACACTCAGGTTTGTTGGCTT
1 TCGTCTTCCACATTGTTGACACTCAGGTTTGTTGGCTT
* *
66831751 TCTTCTTCCACATTGTTGACACTCAAGTTTGTTGGCTT
1 TCGTCTTCCACATTGTTGACACTCAGGTTTGTTGGCTT
*
66831789 TCGTCTTCCACATTCTTGACACTCAGGTTTGTTGGCTT
1 TCGTCTTCCACATTGTTGACACTCAGGTTTGTTGGCTT
66831827 T
1 T
66831828 GGCACTACCA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 72 1.00
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.43
Consensus pattern (38 bp):
TCGTCTTCCACATTGTTGACACTCAGGTTTGTTGGCTT
Found at i:66836111 original size:56 final size:56
Alignment explanation
Indices: 66835947--66836113 Score: 235
Period size: 56 Copynumber: 3.0 Consensus size: 56
66835937 TCTTACATGT
* * * * *
66835947 AATCACATATCGATGCCAATGTACTAGATGTGGTCTTACTCGCACACATATACCAG
1 AATCACATATCGATGCCAACGTATTAAATGTGGTCTTACTCGCACACATATATCGG
* * * *
66836003 AATCATATATCAATGCCAACATATTAAATGTTGTCTTACTCGCACACATATATCGG
1 AATCACATATCGATGCCAACGTATTAAATGTGGTCTTACTCGCACACATATATCGG
* *
66836059 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTTGCACACATATATCG
1 AATCACATATCGATGCCAACGTATTAAATGTGGTCTTACTCGCACACATATATCG
66836114 ATGCCATGGT
Statistics
Matches: 96, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 96 1.00
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (56 bp):
AATCACATATCGATGCCAACGTATTAAATGTGGTCTTACTCGCACACATATATCGG
Found at i:66844992 original size:27 final size:28
Alignment explanation
Indices: 66844962--66845031 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
66844952 ATAATAAGTC
*
66844962 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
66844989 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
66845017 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66845032 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:66847268 original size:49 final size:49
Alignment explanation
Indices: 66847202--66847370 Score: 166
Period size: 49 Copynumber: 3.5 Consensus size: 49
66847192 TGTGTCTCAA
* *
66847202 TGTAAGACCTGTTTGGGACATGGCATCGACAC-CGATAGATGAGAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGCCAG
* * * * *
66847251 TGTAAGACCTGTCTGGGACACGGCACCGGCCTCGATATATGAAAGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCCAG
* * * * * *
66847300 TGTAAGACCTATCTAGGACATGGCATCGACTTTGAT--AT-ACTAGCCAA
1 TGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGA-AAGCCAG
66847347 TGTAAGACCATGTCTGGGACATGG
1 TGTAAGACC-TGTCTGGGACATGG
66847371 TGTCGGCATC
Statistics
Matches: 98, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
46 1 0.01
47 15 0.15
48 13 0.13
49 69 0.70
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.23
Consensus pattern (49 bp):
TGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCCAG
Found at i:66849537 original size:40 final size:40
Alignment explanation
Indices: 66849481--66849665 Score: 211
Period size: 40 Copynumber: 4.7 Consensus size: 40
66849471 TTGAATGATG
* *
66849481 TCCGG-CTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
66849520 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
66849560 TCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
66849600 TCCGGGA-TAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCC-GGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * * *
66849641 -CCGGGCCATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
66849666 AACGAGTGGC
Statistics
Matches: 130, Mismatches: 9, Indels: 13
0.86 0.06 0.09
Matches are distributed among these distances:
39 8 0.06
40 109 0.84
41 13 0.10
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:66849683 original size:80 final size:80
Alignment explanation
Indices: 66849510--66849683 Score: 185
Period size: 80 Copynumber: 2.2 Consensus size: 80
66849500 CTTTGTGCTA
* *
66849510 AGTGACTAAATCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT
1 AGTGACTAAATCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACCAAGAT
**
66849573 CCAAAGGCATTTGTGCG
64 CCAAAGGCATTTGAACG
* * *
66849590 AGTTACTAAATCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCCATG-TC
1 AGTGACTAAATCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACCAAGAT-
* *
66849653 CCGAAGGTATTTGAACG
64 CCAAAGGCATTTGAACG
* *
66849670 AGTGGCTATATCCG
1 AGTGACTAAATCCG
66849684 ATTAAACTCC
Statistics
Matches: 78, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
79 2 0.03
80 71 0.91
81 5 0.06
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (80 bp):
AGTGACTAAATCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACCAAGATCC
AAAGGCATTTGAACG
Found at i:66853996 original size:93 final size:93
Alignment explanation
Indices: 66853836--66854006 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
66853826 GGATGGTTGA
* * *
66853836 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAGT
66853901 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
66853929 GCATCCAAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGTG
1 GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCT-GAACTCGTTGAG
*
66853993 TTGAGTCTGAGTTC
65 TTGAGTCCGAGTTC
66854007 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.31
Consensus pattern (93 bp):
GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:66856988 original size:14 final size:15
Alignment explanation
Indices: 66856971--66857021 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
66856961 ATCTTGGGTA
66856971 TTTATTCTGGA-TTC
1 TTTATTCTGGATTTC
66856985 TTTATTCTGGATTTC
1 TTTATTCTGGATTTC
*
66857000 TCTA-TCTTGGATTTC
1 TTTATTC-TGGATTTC
66857015 TTTATTC
1 TTTATTC
66857022 GGTTTCCTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
14 13 0.41
15 17 0.53
16 2 0.06
ACGTcount: A:0.14, C:0.16, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTATTCTGGATTTC
Found at i:66862875 original size:29 final size:29
Alignment explanation
Indices: 66862841--66862911 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 29
66862831 TCAACCACGT
* *
66862841 ACACTTAGTGCCATGTACTTT-AAACTCGC
1 ACACTTAGTGCCATGCA-TTTCAAACCCGC
*
66862870 ACACTTAGTGCCATGCATTTCAAGCCCGC
1 ACACTTAGTGCCATGCATTTCAAACCCGC
66862899 ACACTTAGTGCCA
1 ACACTTAGTGCCA
66862912 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
ACACTTAGTGCCATGCATTTCAAACCCGC
Found at i:66863969 original size:40 final size:40
Alignment explanation
Indices: 66863925--66864107 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 40
66863915 GCTACTCGTT
* * *
66863925 CAAATACCTTTGGGACATAGCCCAG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACATAGCCCAGATT-TAGTAACTCGCA
* * *
66863965 CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCAGATTTAGTAACTCGCA
* * *
66864005 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CATAGCCCAGATTTAGTAACTCGCA
* * * * *
66864045 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAGCCCAGATTTAGTAAC-TCGCA
*
66864086 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACATAGCCC
66864108 GGGCATCATT
Statistics
Matches: 128, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 112 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAGCCCAGATTTAGTAACTCGCA
Found at i:66864104 original size:80 final size:80
Alignment explanation
Indices: 66863953--66864109 Score: 214
Period size: 80 Copynumber: 2.0 Consensus size: 80
66863943 AGCCCAGTTA
* *
66863953 TAGTAGCTCGCACAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTAGCACAAATGCCTTCGG
*
66864018 ATCTTAGTCCGGATT
66 ATCTTAGCCCGGATT
*
66864033 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-CCGGATTTAGTCACTTAGCACAAA-GCCTT
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTA-TCCCGGATTTAGTAAC-TAGCACAAATGCCTT
66864095 CGGGA-CTTAGCCCGG
63 C-GGATCTTAGCCCGG
66864110 GCATCATTCG
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
79 3 0.04
80 54 0.78
81 12 0.17
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTAGCACAAATGCCTTCGG
ATCTTAGCCCGGATT
Found at i:66869470 original size:22 final size:23
Alignment explanation
Indices: 66869445--66869496 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 23
66869435 ATTTGCATCA
*
66869445 CATATCA-TATACCAAAATCAA-C
1 CATATCATTA-ACCAAAACCAAGC
**
66869467 CATAAGATTAACCAAAACCAAGC
1 CATATCATTAACCAAAACCAAGC
66869490 CATATCA
1 CATATCA
66869497 CATGGCTAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.50, C:0.27, G:0.04, T:0.19
Consensus pattern (23 bp):
CATATCATTAACCAAAACCAAGC
Found at i:66870122 original size:42 final size:42
Alignment explanation
Indices: 66870018--66870136 Score: 141
Period size: 43 Copynumber: 2.8 Consensus size: 42
66870008 CAGAAAGCTC
* * ***
66870018 GTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAA
1 GTACGATGCCAACGTCCTAGACGTGGTCTTACACCAAATCAA
* **
66870060 ATATCGATGCC-ACTGTCCTAGACAAGGTCTTACACCAAATCAA
1 GTA-CGATGCCAAC-GTCCTAGACGTGGTCTTACACCAAATCAA
66870103 GTACGATGCCAACGTCCTAGACGTGGTCTTACAC
1 GTACGATGCCAACGTCCTAGACGTGGTCTTACAC
66870137 GTAAAACATA
Statistics
Matches: 63, Mismatches: 11, Indels: 6
0.79 0.14 0.08
Matches are distributed among these distances:
42 30 0.48
43 33 0.52
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (42 bp):
GTACGATGCCAACGTCCTAGACGTGGTCTTACACCAAATCAA
Found at i:66879018 original size:64 final size:63
Alignment explanation
Indices: 66878938--66879121 Score: 183
Period size: 67 Copynumber: 2.9 Consensus size: 63
66878928 AGACATTATG
* *
66878938 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTA-TGGGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACT-AGATA
** * * * *
66879001 TATGTAGCTAGGTCGCATGCATGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACTAGA
1 -ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACTAGA
66879066 TA
62 TA
* * * * *
66879068 ATTTGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
66879122 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 24 0.25
66 23 0.24
67 28 0.29
68 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACTAGATA
Found at i:66888319 original size:40 final size:40
Alignment explanation
Indices: 66888253--66888403 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
66888243 AAATTGAATG
* * *
66888253 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
66888292 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
66888332 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
66888372 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
66888404 ACGTGATTAA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:66896327 original size:40 final size:40
Alignment explanation
Indices: 66896261--66896411 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
66896251 AAATTGAATG
* * *
66896261 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
66896300 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
66896340 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
66896380 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
66896412 ACGTGATTAA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:66899814 original size:42 final size:42
Alignment explanation
Indices: 66899767--66899862 Score: 115
Period size: 43 Copynumber: 2.3 Consensus size: 42
66899757 AGCTCGTACA
* *
66899767 ATGCCAATGTCC-AGACACGGTCTTACA-TGTAATCAAATATCG
1 ATGCCAATGTCCTAGACAAGGTCTTACACT-AAATCAAATA-CG
* *
66899809 ATGCCACTATCCTAGACAAGGTCTTACACTAAATCAAATACG
1 ATGCCAATGTCCTAGACAAGGTCTTACACTAAATCAAATACG
*
66899851 ATGCCAACGTCC
1 ATGCCAATGTCC
66899863 CAAATGTGGT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
42 21 0.47
43 23 0.51
44 1 0.02
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCTAGACAAGGTCTTACACTAAATCAAATACG
Found at i:66899908 original size:44 final size:44
Alignment explanation
Indices: 66899828--66899934 Score: 128
Period size: 44 Copynumber: 2.5 Consensus size: 44
66899818 TCCTAGACAA
* * * *
66899828 GGTCTTACAC-TAAATCA-AATACGATGCCAACGTCCCAAATGT
1 GGTCTTACACGTAAAACATAAGACAATGCCAACATCCCAAATGT
*
66899870 GGTCTTACACGTAAAACATAAGACAATGCCAACATCCCAGATGT
1 GGTCTTACACGTAAAACATAAGACAATGCCAACATCCCAAATGT
* *
66899914 GATCTTACACGATAACACATA
1 GGTCTTACACG-TAAAACATA
66899935 TCGGATCCTA
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
42 10 0.18
43 6 0.11
44 31 0.56
45 8 0.15
ACGTcount: A:0.38, C:0.25, G:0.14, T:0.22
Consensus pattern (44 bp):
GGTCTTACACGTAAAACATAAGACAATGCCAACATCCCAAATGT
Found at i:66902240 original size:26 final size:26
Alignment explanation
Indices: 66902211--66902292 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
66902201 TGGTACAAAT
66902211 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
66902237 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
66902263 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
66902289 TGAT
1 TGAT
66902293 GGGAATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:66924373 original size:42 final size:42
Alignment explanation
Indices: 66924312--66924400 Score: 126
Period size: 42 Copynumber: 2.1 Consensus size: 42
66924302 ATGTTATCAA
*
66924312 ATAT-CGATACCACTGTCCCAGACAGGGTCTTAAACGAAATC
1 ATATACGATACCAATGTCCCAGACAGGGTCTTAAACGAAATC
* * *
66924353 ATATACGATGCCAATGTCCCAGACATGGTCTTACACGAAATC
1 ATATACGATACCAATGTCCCAGACAGGGTCTTAAACGAAATC
*
66924395 ACATAC
1 ATATAC
66924401 CAGAATCCTA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
41 4 0.10
42 38 0.90
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (42 bp):
ATATACGATACCAATGTCCCAGACAGGGTCTTAAACGAAATC
Found at i:66927280 original size:29 final size:29
Alignment explanation
Indices: 66927221--66927278 Score: 98
Period size: 30 Copynumber: 2.0 Consensus size: 29
66927211 CAAATAGCCG
*
66927221 AAGCTAGTTAAATTGCACACTTAGTGCCC
1 AAGCTAGTTAAATCGCACACTTAGTGCCC
66927250 AAGCTAGTTTAAATCGCACACTTAGTGCC
1 AAGCTAG-TTAAATCGCACACTTAGTGCC
66927279 AAAACTTCCG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 7 0.26
30 20 0.74
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCC
Found at i:66931622 original size:42 final size:42
Alignment explanation
Indices: 66931472--66931626 Score: 120
Period size: 42 Copynumber: 3.7 Consensus size: 42
66931462 AAAAAGATGC
* * * ** *
66931472 CAATACCATGTCCCAGACA-TAGTCTTACATGGGATCTCACAT
1 CAATGCCATGTCCCAGA-AGTGGTCTTACACGAAATCTCATAT
* * ** * * *
66931514 CGATGCCATATCCCAGATTTTGTCTTATACGAAATCTCATTT
1 CAATGCCATGTCCCAGAAGTGGTCTTACACGAAATCTCATAT
*
66931556 CAATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCATAT
1 CAATGCCATGTCCCAGAAGTGGTCTTACACGAAATCTCATAT
66931598 CAACT-CCATAG-CCCAGATAG-GGTCTTACA
1 CAA-TGCCAT-GTCCCAGA-AGTGGTCTTACA
66931627 TTATAACACA
Statistics
Matches: 90, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
42 87 0.97
43 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (42 bp):
CAATGCCATGTCCCAGAAGTGGTCTTACACGAAATCTCATAT
Found at i:66931685 original size:90 final size:90
Alignment explanation
Indices: 66931555--66931750 Score: 243
Period size: 90 Copynumber: 2.2 Consensus size: 90
66931545 AAATCTCATT
* *
66931555 TCAATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCATATCAACT-CCATAGCCCAGATAGG
1 TCAATGCCATGTCCCAGAAGTGGTCTTACACGAAACCTCATATCAA-TGCCATAGCCCAGATAGG
* * *
66931619 GTCTTACATTATAACACATACCGATG
65 GCCTTACATGATAAAACATACCGATG
* ** * *
66931645 TCAATGCCATGTCCTA-AAGTTGGTCTTACGTGAAACCTCATATCAATGCCATAGCCTAGATATG
1 TCAATGCCATGTCCCAGAAG-TGGTCTTACACGAAACCTCATATCAATGCCATAGCCCAGATAGG
66931709 GCCTTACATGATAAAACATACCGATG
65 GCCTTACATGATAAAACATACCGATG
* * *
66931735 CCGATGCCATATCCCA
1 TCAATGCCATGTCCCA
66931751 AATACGGTCT
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
89 3 0.03
90 87 0.97
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (90 bp):
TCAATGCCATGTCCCAGAAGTGGTCTTACACGAAACCTCATATCAATGCCATAGCCCAGATAGGG
CCTTACATGATAAAACATACCGATG
Found at i:66943081 original size:29 final size:29
Alignment explanation
Indices: 66943047--66943178 Score: 88
Period size: 29 Copynumber: 4.6 Consensus size: 29
66943037 TACTCGATTT
* * *
66943047 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
66943076 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
66943105 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
66943134 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
66943163 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
66943179 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
29 87 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:66943139 original size:58 final size:59
Alignment explanation
Indices: 66943046--66943178 Score: 137
Period size: 58 Copynumber: 2.3 Consensus size: 59
66943036 ATACTCGATT
* * * *
66943046 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGCA
* * * ** * *
66943104 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGCA
66943163 T-GCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
66943179 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
57 4 0.06
58 57 0.92
59 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGCA
Found at i:66945232 original size:24 final size:25
Alignment explanation
Indices: 66945204--66945257 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
66945194 AATTAACGTA
*
66945204 ATTATAATT-TTTAGTTTAAATATT
1 ATTATAATTATTTAGTTTAAATATG
* * *
66945228 ATTATATTTATTTATTTTAATTATG
1 ATTATAATTATTTAGTTTAAATATG
66945253 ATTAT
1 ATTAT
66945258 TATGTTCAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (25 bp):
ATTATAATTATTTAGTTTAAATATG
Found at i:66951034 original size:41 final size:39
Alignment explanation
Indices: 66950877--66951045 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 39
66950867 GCTCGATTGT
* * * * *
66950877 CTTCGGGACATTGCCCGG-TTATAGTGATTCACACAATTGC
1 CTTCGGGA-ATTACCCGGATT-TAGTAACTCGCACAAATGC
*
66950917 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGAATTA-CCCGGATTTAGTAACTCGCACAAATGC
* *
66950957 CTTCGGGACTTAACCC-GATTTTGGTAACTCGCACAAATGC
1 CTTCGGGAATT-ACCCGGA-TTTAGTAACTCGCACAAATGC
* * * *
66950997 CTTCGGGAATTGACCCGGATTTAGTCACTTAGGACAAAAGC
1 CTTCGGGAATT-ACCCGGATTTAGTAAC-TCGCACAAATGC
66951038 CTTCGGGA
1 CTTCGGGA
66951046 CATAGCTCGG
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
39 5 0.05
40 80 0.75
41 22 0.21
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (39 bp):
CTTCGGGAATTACCCGGATTTAGTAACTCGCACAAATGC
Found at i:66963296 original size:28 final size:28
Alignment explanation
Indices: 66963264--66963318 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
66963254 CACAGACGAT
*
66963264 GACACTAG-TGTGTCTAGGCCGTGTGAGG
1 GACACGAGATGTG-CTAGGCCGTGTGAGG
*
66963292 GACACGAGCATGTGCTTGGCCGTGTGA
1 GACACGAG-ATGTGCTAGGCCGTGTGA
66963319 AAACCCCTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 7 0.30
29 12 0.52
30 4 0.17
ACGTcount: A:0.18, C:0.20, G:0.38, T:0.24
Consensus pattern (28 bp):
GACACGAGATGTGCTAGGCCGTGTGAGG
Found at i:66969698 original size:20 final size:18
Alignment explanation
Indices: 66969662--66969712 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
66969652 AAGGGCTATT
*
66969662 TTGTAAAGTTGTAAAATAA
1 TTGTAAA-TTGTGAAATAA
66969681 GTTGTAAATATGTGAAATAA
1 -TTGTAAAT-TGTGAAATAA
66969701 TTG-AAATTGTGA
1 TTGTAAATTGTGA
66969713 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (18 bp):
TTGTAAATTGTGAAATAA
Found at i:66976446 original size:43 final size:43
Alignment explanation
Indices: 66976381--66976510 Score: 142
Period size: 43 Copynumber: 3.0 Consensus size: 43
66976371 ACATAGGATT
*
66976381 TCGATATGTGTATT-TGTGTAAGACCACGTCTGGGATGTTGGCA
1 TCGATATGTG-ATTACGTGTAAGACCACGTCTGGGATGTTGGCA
66976424 TC-ATTATGTGATTACGTGTAAGACC-CTGTCTGGGATAG-TGGCA
1 TCGA-TATGTGATTACGTGTAAGACCAC-GTCTGGGAT-GTTGGCA
* * * * *
66976467 TCGATATGTGATTACATGTAAGACCATGCCTTGGACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCA
66976510 T
1 T
66976511 TGTACAATAA
Statistics
Matches: 74, Mismatches: 6, Indels: 14
0.79 0.06 0.15
Matches are distributed among these distances:
42 6 0.08
43 66 0.89
44 2 0.03
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (43 bp):
TCGATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCA
Found at i:66978543 original size:27 final size:27
Alignment explanation
Indices: 66978494--66978546 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
66978484 AATCATACAT
* *
66978494 CACATAGGGGCAAAATAATCATTTTAC
1 CACATAGGGGCAAAACAACCATTTTAC
* *
66978521 CACATAGGGGCATAACAGCCATTTTA
1 CACATAGGGGCAAAACAACCATTTTA
66978547 TCAATTAGGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.25
Consensus pattern (27 bp):
CACATAGGGGCAAAACAACCATTTTAC
Found at i:66984062 original size:51 final size:47
Alignment explanation
Indices: 66983967--66984161 Score: 273
Period size: 47 Copynumber: 4.1 Consensus size: 47
66983957 TTAGGATTTT
** * *
66983967 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
66984014 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--TATATAT--GTGATAAGGCCGAATGGCCA
* *
66984065 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
66984112 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
66984159 ATG
1 ATG
66984162 CGAAATGTGT
Statistics
Matches: 132, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
47 84 0.64
49 10 0.08
51 38 0.29
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:66984098 original size:98 final size:94
Alignment explanation
Indices: 66983967--66984161 Score: 291
Period size: 98 Copynumber: 2.0 Consensus size: 94
66983957 TTAGGATTTT
* * * *
66983967 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCAGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCAGAATGGCCAATGTGATGAATGTGAACA
66984032 TGTATATATATGCGTGATAAGGCCGAATGGCCA
66 TG--TATATAT--GTGATAAGGCCGAATGGCCA
*
66984065 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCAGAATGGCCAATGTGATGAATGTGAACA
* *
66984130 TGTATATATGTGGTAAGGCCGAATGGCTA
66 TGTATATATGTGATAAGGCCGAATGGCCA
66984159 ATG
1 ATG
66984162 CGAAATGTGT
Statistics
Matches: 90, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
94 21 0.23
96 7 0.08
98 62 0.69
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCAGAATGGCCAATGTGATGAATGTGAACA
TGTATATATGTGATAAGGCCGAATGGCCA
Found at i:66984271 original size:46 final size:46
Alignment explanation
Indices: 66984135--66984271 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
66984125 GAACATGTAT
* *
66984135 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
66984181 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATAAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
66984227 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
66984272 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:66984486 original size:37 final size:37
Alignment explanation
Indices: 66984427--66984565 Score: 233
Period size: 37 Copynumber: 3.8 Consensus size: 37
66984417 ATCCGGGATT
* ** *
66984427 TAAGGCCCGATGACTATATGTGGAGATTATGTCTGGG
1 TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGG
66984464 TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGG
1 TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGG
66984501 TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGG
1 TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGG
*
66984538 TAAGACCCGATGACTTCGTGTGGAGATT
1 TAAGACCCGATGACTACGTGTGGAGATT
66984566 TCGTCTGAGC
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (37 bp):
TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGG
Found at i:66996034 original size:46 final size:45
Alignment explanation
Indices: 66995954--66996122 Score: 124
Period size: 46 Copynumber: 3.6 Consensus size: 45
66995944 ATAGCCGATG
* * *
66995954 CATGTCCCAGACATGTCTTATACTGGC-TTACATCTCGAGGCCAAAA
1 CATGTCCCAGACATGTCTTACACTAGCACT-CATCT-GAGGCCAAAA
* * ***
66996000 CATGTCCCAGACATGTCTTACACTAGCACTCATCTTAATGCCAGTGC
1 CATGTCCCAGACATGTCTTACACTAGCACTCATC-TGAGGCCA-AAA
** * * * * * **
66996047 CATGTCTTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCACTCAT-CTGAGGCCAAAA
66996094 CATGTCCCAGACATGTCTTACACTAGCAC
1 CATGTCCCAGACATGTCTTACACTAGCAC
66996123 ACACATGTGA
Statistics
Matches: 94, Mismatches: 24, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
46 47 0.50
47 26 0.28
48 21 0.22
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCATCTGAGGCCAAAA
Found at i:67013733 original size:40 final size:40
Alignment explanation
Indices: 67013678--67013829 Score: 232
Period size: 40 Copynumber: 3.8 Consensus size: 40
67013668 GGACTAAGAT
* * *
67013678 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTC
67013718 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTC
*
67013758 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTC
* * **
67013798 CCGAAGGCATTTGCGAGAGTTGTTATATCCGG
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGG
67013830 CTTGTGACAC
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTC
Found at i:67015996 original size:47 final size:47
Alignment explanation
Indices: 67015925--67016045 Score: 224
Period size: 47 Copynumber: 2.6 Consensus size: 47
67015915 ATGTATGAGA
*
67015925 TATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
67015972 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
67016019 TATATATATGTGATAAGGCCTAATGGC
1 TATATATATGTGATAAGGCCTAATGGC
67016046 TAATGTGAAA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.31
Consensus pattern (47 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
Found at i:67016092 original size:48 final size:48
Alignment explanation
Indices: 67016023--67016198 Score: 280
Period size: 48 Copynumber: 3.7 Consensus size: 48
67016013 TGAAAGTATA
* * *
67016023 TATATGTGATAAGGCCTAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
67016071 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
* * * *
67016119 TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
*
67016167 AATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
67016199 TGTTGTAACA
Statistics
Matches: 119, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 119 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
Found at i:67016388 original size:37 final size:37
Alignment explanation
Indices: 67016246--67016385 Score: 217
Period size: 37 Copynumber: 3.8 Consensus size: 37
67016236 AATATATTCT
*
67016246 GGGTAAGACCCGATGACTACGTATGGAGACTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGACTATGTCC
67016283 GGGTAAGACCCGATGACTACGTGTGGAGACTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGACTATGTCC
* *
67016320 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGACTATGTCC
* * * *
67016357 GGGTGAGACCCGATAACTTCGTTTGGAGA
1 GGGTAAGACCCGATGACTACGTGTGGAGA
67016386 TTTCGTCTGA
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGACTATGTCC
Found at i:67018429 original size:40 final size:40
Alignment explanation
Indices: 67018363--67018594 Score: 356
Period size: 40 Copynumber: 5.8 Consensus size: 40
67018353 GAGAATTGAG
* * * *
67018363 AGTGATATATCCGGGCTAAATCCCGAACAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
67018403 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
67018443 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
67018483 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* * *
67018523 AGTAATGCAACCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
67018563 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCA
67018595 ATCATGCTGG
Statistics
Matches: 178, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 178 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:67022250 original size:47 final size:47
Alignment explanation
Indices: 67022193--67022358 Score: 305
Period size: 47 Copynumber: 3.5 Consensus size: 47
67022183 GTATGAGATA
67022193 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
67022240 TATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
67022287 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
67022334 TATACATGTGATAAGGCCTAATGGC
1 TATATATGTGATAAGGCCTAATGGC
67022359 TAATGTGAAA
Statistics
Matches: 115, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 115 1.00
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.30
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:67022405 original size:48 final size:48
Alignment explanation
Indices: 67022339--67022559 Score: 361
Period size: 48 Copynumber: 4.6 Consensus size: 48
67022329 AAGTATATAC
* * *
67022339 ATGTGATAAGGCCTAATGGCTAATGTGAAATATATGTGTGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTAT
67022387 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTAT
67022435 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTAT
* * * * *
67022483 ATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGAAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTAT
*
67022531 ATGTGGTAAAGCTGAATGGCTAATGTGAA
1 ATGTGGTAAAGCCGAATGGCTAATGTGAA
67022560 TGTTGTAACA
Statistics
Matches: 163, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 163 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTAT
Found at i:67022749 original size:37 final size:37
Alignment explanation
Indices: 67022604--67022746 Score: 232
Period size: 37 Copynumber: 3.9 Consensus size: 37
67022594 GGAAATATAT
67022604 TCCGGGTAAGACCCGATGACTACGTGTGGAGACTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGACTATG
67022641 TCCGGGTAAGACCCGATGACTACGTGTGGAGACTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGACTATG
* *
67022678 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGACTATG
* ** *
67022715 TCCGGGTGAGACCCGACAACTTCGTGTGGAGA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA
67022747 TTTCGTCTGA
Statistics
Matches: 100, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.23, C:0.22, G:0.33, T:0.22
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGACTATG
Found at i:67028074 original size:27 final size:27
Alignment explanation
Indices: 67028044--67028183 Score: 124
Period size: 27 Copynumber: 5.2 Consensus size: 27
67028034 ATTACCGTTT
* * *
67028044 TACCCTCAATTTACAGAATTACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
** *
67028071 TACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
* *
67028098 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTC-AGTTTATAAAATTACCAAAA
**
67028125 TACCCTTTGTTTATAAAATTACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
* * *
67028152 TACCCAT-GGTTT-GAAAATTACTAAAA
1 TACCC-TCAGTTTATAAAATTACCAAAA
67028178 TACCCT
1 TACCCT
67028184 GTAGGGTAAA
Statistics
Matches: 92, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
25 1 0.01
26 17 0.18
27 73 0.79
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.31
Consensus pattern (27 bp):
TACCCTCAGTTTATAAAATTACCAAAA
Found at i:67028118 original size:54 final size:53
Alignment explanation
Indices: 67028060--67028183 Score: 194
Period size: 54 Copynumber: 2.3 Consensus size: 53
67028050 CAATTTACAG
* *
67028060 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATAGTTTG-AA
* * *
67028114 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATAGTTTGAA
67028167 AATTACTAAAATACCCT
1 AATTACTAAAATACCCT
67028184 GTAGGGTAAA
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
53 19 0.29
54 46 0.71
ACGTcount: A:0.42, C:0.20, G:0.06, T:0.31
Consensus pattern (53 bp):
AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATAGTTTGAA
Found at i:67028177 original size:26 final size:27
Alignment explanation
Indices: 67028060--67028183 Score: 144
Period size: 27 Copynumber: 4.6 Consensus size: 27
67028050 CAATTTACAG
*
67028060 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTAGAA
* * *
67028087 AATCACCAAAATACCCCTAGTTT-GTAA
1 AATTACCAAAATACCCTTGGTTTAG-AA
* * *
67028114 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTAGAA
*
67028141 AATTACCAAAATACCCATGGTTT-GAA
1 AATTACCAAAATACCCTTGGTTTAGAA
*
67028167 AATTACTAAAATACCCT
1 AATTACCAAAATACCCT
67028184 GTAGGGTAAA
Statistics
Matches: 80, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
26 17 0.21
27 63 0.79
ACGTcount: A:0.42, C:0.20, G:0.06, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTAGAA
Found at i:67028194 original size:26 final size:27
Alignment explanation
Indices: 67028110--67028225 Score: 105
Period size: 26 Copynumber: 4.4 Consensus size: 27
67028100 CCCCTAGTTT
**
67028110 GTAAAATTACTAAAATACCCTTTGT-TT
1 GTAAAATTACTAAAATACCC-TTGTAGG
* * * *
67028137 ATAAAATTACCAAAATACCCATG--GT
1 GTAAAATTACTAAAATACCCTTGTAGG
*
67028162 TTGAAAATTACTAAAATACCC-TGTAGG
1 GT-AAAATTACTAAAATACCCTTGTAGG
* *
67028189 GTAAAATTACTGAAATACCCTTGTGGG
1 GTAAAATTACTAAAATACCCTTGTAGG
67028216 GTAAAATTAC
1 GTAAAATTAC
67028226 CATTTTGCCC
Statistics
Matches: 75, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
25 4 0.05
26 36 0.48
27 35 0.47
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.31
Consensus pattern (27 bp):
GTAAAATTACTAAAATACCCTTGTAGG
Found at i:67028877 original size:28 final size:28
Alignment explanation
Indices: 67028845--67028903 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
67028835 GCGTAGATCA
67028845 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
67028873 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
67028901 CGA
1 CGA
67028904 TATACCTCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:67032197 original size:27 final size:27
Alignment explanation
Indices: 67032167--67032306 Score: 124
Period size: 27 Copynumber: 5.2 Consensus size: 27
67032157 ATTACCGTTT
* * *
67032167 TACCCTCAATTTACAGAATTACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
** *
67032194 TACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
* *
67032221 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTC-AGTTTATAAAATTACCAAAA
**
67032248 TACCCTTTGTTTATAAAATTACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
* *
67032275 TACCCAT-GGTTTGA-AAAATTACTAAAA
1 TACCC-TCAGTTT-ATAAAATTACCAAAA
67032302 TACCC
1 TACCC
67032307 CTGTAGGGTA
Statistics
Matches: 92, Mismatches: 17, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
27 90 0.98
28 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.31
Consensus pattern (27 bp):
TACCCTCAGTTTATAAAATTACCAAAA
Found at i:67032241 original size:54 final size:54
Alignment explanation
Indices: 67032183--67032306 Score: 194
Period size: 54 Copynumber: 2.3 Consensus size: 54
67032173 CAATTTACAG
* * *
67032183 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATAGTTTGAAA
* * *
67032237 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATAGTTTGAAA
67032291 AATTACTAAAATACCC
1 AATTACTAAAATACCC
67032307 CTGTAGGGTA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATAGTTTGAAA
Found at i:67032268 original size:81 final size:81
Alignment explanation
Indices: 67032183--67032335 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
67032173 CAATTTACAG
* **
67032183 AATTACCAAAATACCCTTGGTTT-ATAAAATCACCAAAATACCCCTAGT-TTGTAAAATTACTAA
1 AATTACCAAAATACCCATGGTTTGA-AAAATCACCAAAATACCCCT-GTAGGGTAAAATTACTAA
67032246 AATACCCTTTGTTTATAA
64 AATACCCTTTGTTTATAA
* * *
67032264 AATTACCAAAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGTAAAATTACTGAAA
1 AATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTAAAA
67032329 TACCCTT
66 TACCCTT
67032336 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:67032319 original size:27 final size:27
Alignment explanation
Indices: 67032289--67032350 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
67032279 CATGGTTTGA
67032289 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
67032316 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
67032343 AAAATTAC
1 AAAATTAC
67032351 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:67032319 original size:54 final size:54
Alignment explanation
Indices: 67032183--67032333 Score: 153
Period size: 54 Copynumber: 2.8 Consensus size: 54
67032173 CAATTTACAG
* ** * * *
67032183 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATAGTTTGAAA
* ** *
67032237 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATAGTTTGAAA
* **
67032291 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
67032334 TTGTGGGGTA
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 3 0.04
54 80 0.95
55 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATAGTTTGAAA
Found at i:67033003 original size:28 final size:28
Alignment explanation
Indices: 67032971--67033029 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
67032961 GCGTAGATCA
67032971 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
67032999 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
67033027 CGA
1 CGA
67033030 TATACCTCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:67039418 original size:40 final size:40
Alignment explanation
Indices: 67039308--67039505 Score: 273
Period size: 40 Copynumber: 5.1 Consensus size: 40
67039298 CTAAGATCCA
* * *
67039308 AAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
*
67039348 AAGGCATTTGT-----TTACTATATCCGGGTTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
67039383 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
*
67039423 AAGGCATTTGTGCGAGTTACTATATCCAGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
** * *
67039463 AAGGCATTTGTGCGAGTTGTTATATCC-GACTAAATCCCG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
67039502 AAGG
1 AAGG
67039506 TACTTGGGTT
Statistics
Matches: 146, Mismatches: 7, Indels: 11
0.89 0.04 0.07
Matches are distributed among these distances:
35 34 0.23
39 14 0.10
40 98 0.67
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCG
Found at i:67039431 original size:75 final size:76
Alignment explanation
Indices: 67039308--67039505 Score: 265
Period size: 75 Copynumber: 2.6 Consensus size: 76
67039298 CTAAGATCCA
* * * *
67039308 AAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGGCATTTGT-TTACTATATCCGG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTTACTATATCCAG
*
67039372 GTTAAGTCCCG
66 GCTAAGTCCCG
67039383 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT----GTTACTATAT
67039448 CCAGGCTAAGTCCCG
62 CCAGGCTAAGTCCCG
** * *
67039463 AAGGCATTTGTGCGAGTTGTTATATCC-GACTAAATCCCGAAGG
1 AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
67039506 TACTTGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
75 48 0.44
79 14 0.13
80 47 0.43
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (76 bp):
AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTTACTATATCCAG
GCTAAGTCCCG
Found at i:67041156 original size:43 final size:43
Alignment explanation
Indices: 67041099--67041259 Score: 136
Period size: 43 Copynumber: 3.8 Consensus size: 43
67041089 AATGCCAACA
*
67041099 TCCCAGAC-GTGGTCTTACA-TATAATTCAGTATCGATGCCTTTG
1 TCCCAGACAG-GGTCTTACACTATAATTCAG-ATCGATGCCTATG
* * * *
67041142 TCCCAGACAGGGTCTTATACGA-AA-ACAGATACGATGCCGATG
1 TCCCAGACAGGGTCTTACACTATAATTCAGAT-CGATGCCTATG
* * * *
67041184 TCCCAGA-ATGGTCTTACACGTA-AATTTCAAATTGATGCCTGTG
1 TCCCAGACAGGGTCTTACAC-TATAA-TTCAGATCGATGCCTATG
* *
67041227 TCCCAGACACGGTCTTACACGATAATTCAGATC
1 TCCCAGACAGGGTCTTACACTATAATTCAGATC
67041260 AATACCAATG
Statistics
Matches: 93, Mismatches: 17, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
41 12 0.13
42 22 0.24
43 40 0.43
44 19 0.20
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (43 bp):
TCCCAGACAGGGTCTTACACTATAATTCAGATCGATGCCTATG
Found at i:67047006 original size:20 final size:20
Alignment explanation
Indices: 67046983--67047020 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67046973 CACATCCAAA
*
67046983 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
67047003 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
67047021 GAATAAACCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:67054814 original size:25 final size:25
Alignment explanation
Indices: 67054786--67054856 Score: 67
Period size: 25 Copynumber: 2.8 Consensus size: 25
67054776 TTACTAATTC
67054786 TTAGCTCGAGAGAGCTTACCGAG-AT
1 TTAGCTCGA-AGAGCTTACCGAGTAT
67054811 TTAGCTC-ACACGAGCTTACC-AGTAT
1 TTAGCTCGA-A-GAGCTTACCGAGTAT
* *
67054836 TCAGCTCGTATGAGCTTACCG
1 TTAGCTCG-AAGAGCTTACCG
67054857 CTTACAGCTA
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
24 4 0.11
25 33 0.87
27 1 0.03
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (25 bp):
TTAGCTCGAAGAGCTTACCGAGTAT
Found at i:67058680 original size:42 final size:42
Alignment explanation
Indices: 67058634--67058884 Score: 367
Period size: 42 Copynumber: 6.0 Consensus size: 42
67058624 GTTCCAGACT
* * * *
67058634 GTGTGGTATACACGGTTGAGATACACGCCTGTGTCTCTGCCC
1 GTGTGGTACACACGGCTGAGACACACGCCCGTGTCTCTGCCC
** * * * *
67058676 GTGTGGTACACACAACTGAGACACACGCCCTTGCCTCTACCG
1 GTGTGGTACACACGGCTGAGACACACGCCCGTGTCTCTGCCC
67058718 GTGTGGTACACACGGCTGAGACACACGCCCGTGTCTCTGCCC
1 GTGTGGTACACACGGCTGAGACACACGCCCGTGTCTCTGCCC
*
67058760 GTGTGGTGCACACGGCTGAGACACACGCCCGTGTCTCTGCCC
1 GTGTGGTACACACGGCTGAGACACACGCCCGTGTCTCTGCCC
*
67058802 GTGTGGTGCACACGGCTGAGACACACGCCCGTGTCTCTGCCC
1 GTGTGGTACACACGGCTGAGACACACGCCCGTGTCTCTGCCC
* * *
67058844 GTGTGGTGCACACGGCTGAGACACATGCCTGTGTCTCTGCC
1 GTGTGGTACACACGGCTGAGACACACGCCCGTGTCTCTGCC
67058885 TGTGAGCTCA
Statistics
Matches: 190, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 190 1.00
ACGTcount: A:0.17, C:0.33, G:0.29, T:0.22
Consensus pattern (42 bp):
GTGTGGTACACACGGCTGAGACACACGCCCGTGTCTCTGCCC
Found at i:67062520 original size:17 final size:18
Alignment explanation
Indices: 67062498--67062543 Score: 67
Period size: 17 Copynumber: 2.5 Consensus size: 18
67062488 TCAAGAATAT
67062498 CATATGAGGGTAAC-ACA
1 CATATGAGGGTAACAACA
67062515 CATATGAGGGTAACATACA
1 CATATGAGGGTAACA-ACA
67062534 CATGATGAGG
1 CAT-ATGAGG
67062544 CAATTGGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 14 0.54
19 6 0.23
20 6 0.23
ACGTcount: A:0.39, C:0.15, G:0.26, T:0.20
Consensus pattern (18 bp):
CATATGAGGGTAACAACA
Found at i:67065210 original size:55 final size:53
Alignment explanation
Indices: 67065085--67065273 Score: 245
Period size: 55 Copynumber: 3.5 Consensus size: 53
67065075 AACTTACCAT
* * * *
67065085 TGCCATGTCTTGACATGATCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
*
67065138 TGCCATGCCTTGGCATGGTCTTACATGGTACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * *
67065193 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
*
67065247 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
67065274 ATATCCTTAT
Statistics
Matches: 120, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
52 2 0.02
53 35 0.29
54 35 0.29
55 45 0.38
56 3 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:67065316 original size:47 final size:47
Alignment explanation
Indices: 67065260--67065380 Score: 199
Period size: 46 Copynumber: 2.6 Consensus size: 47
67065250 CATGCCTTGG
* *
67065260 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
* *
67065307 TATGGTCTTACATGGTATCCTTGTC-TACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
67065353 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
67065381 ATGCCAATGC
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
46 44 0.65
47 24 0.35
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:67066177 original size:31 final size:30
Alignment explanation
Indices: 67066136--67066199 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
67066126 CATTCCCTAA
*
67066136 CTAAAACTTTGGAAAAGTTACAATTTTACCC
1 CTAAAACTTTGCAAAA-TTACAATTTTACCC
* ** *
67066167 CTAAACCTTTGCAAAATTATGATTTTTCCC
1 CTAAAACTTTGCAAAATTACAATTTTACCC
67066197 CTA
1 CTA
67066200 GGCTCAGAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 14 0.50
31 14 0.50
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (30 bp):
CTAAAACTTTGCAAAATTACAATTTTACCC
Found at i:67073155 original size:50 final size:50
Alignment explanation
Indices: 67073080--67073371 Score: 291
Period size: 50 Copynumber: 5.8 Consensus size: 50
67073070 TGAAGCTCTA
* * *
67073080 TGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATC
* ** * *
67073130 TGGTATATGTCGTAGCCTGCACTTAGTACTACACATGTGACCTAACCAT-
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATC
* * * * *
67073179 TGGATACACATAGTAGCCTGCACTTAGTACTAGACACGTGATCGAAGCTATC
1 TGG-TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAATC
* ** * * **
67073231 GGGTATGCACAGTAGCCTACACTTAGTACTACACATGCAACCTAACAATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATC
* *
67073281 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-AACC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATC
** * *
67073330 ATTTTAAACACATAGTAGCCTGTACATAGTACTACACATGTG
1 -TGGT--ACACATAGTAGCCTGCACTTAGTACTACACATGTG
67073372 TTCTCACAAC
Statistics
Matches: 193, Mismatches: 43, Indels: 10
0.78 0.17 0.04
Matches are distributed among these distances:
49 6 0.03
50 118 0.61
51 35 0.18
52 34 0.18
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (50 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATC
Found at i:67073321 original size:151 final size:152
Alignment explanation
Indices: 67073081--67073363 Score: 415
Period size: 151 Copynumber: 1.9 Consensus size: 152
67073071 GAAGCTCTAT
* * * * * ** *
67073081 GGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTATATGTCGTAGC
1 GGTACGCACAGTAGCCTACACTTAGTACTACACATGCAACCTAACAATCTGGTACACATAGTAGC
* * *
67073146 CTGCACTTAGTACTACACATGTGACCT-AACCATTGGATACACATAGTAGCCTGCACTTAGTACT
66 CTGCACTTAGTACTACACACGTGACCTAAACCATTGGAAACACATAGTAGCCTGCACATAGTACT
67073210 AGACACGTGATCGAAGCTATCG
131 AGACACGTGATCGAAGCTATCG
*
67073232 GGTATGCACAGTAGCCTACACTTAGTACTACACATGCAACCTAACAATCTGGTACACATAGTAGC
1 GGTACGCACAGTAGCCTACACTTAGTACTACACATGCAACCTAACAATCTGGTACACATAGTAGC
** *
67073297 CTGCACTTAGTACTACACACGTGACCTAAAACCATTTTAAACACATAGTAGCCTGTACATAGTAC
66 CTGCACTTAGTACTACACACGTGACCT-AAACCATTGGAAACACATAGTAGCCTGCACATAGTAC
67073362 TA
130 TA
67073364 CACATGTGTT
Statistics
Matches: 115, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
151 82 0.71
153 33 0.29
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (152 bp):
GGTACGCACAGTAGCCTACACTTAGTACTACACATGCAACCTAACAATCTGGTACACATAGTAGC
CTGCACTTAGTACTACACACGTGACCTAAACCATTGGAAACACATAGTAGCCTGCACATAGTACT
AGACACGTGATCGAAGCTATCG
Found at i:67086282 original size:48 final size:48
Alignment explanation
Indices: 67086209--67086400 Score: 242
Period size: 48 Copynumber: 4.0 Consensus size: 48
67086199 ACCATGCTAA
*
67086209 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTGGTGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAT
*
67086257 ATGTGCCTGTGTAAGACCATATCTGGGACATGGCATCGGTGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAT
* * * * * *
67086305 GTGTGCCAGCGTAAGACCATGCCTGGGACATGGAATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAT
* * * * **
67086353 GTGTG-CTAGTCTAAGACCATGTGTGGGACATGGAATCGACGATGATAT
1 ATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAT
67086401 GTGGATTCAT
Statistics
Matches: 128, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
47 1 0.01
48 127 0.99
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAT
Found at i:67095872 original size:79 final size:79
Alignment explanation
Indices: 67095761--67095985 Score: 253
Period size: 79 Copynumber: 2.8 Consensus size: 79
67095751 GCTACTCATT
* * * *
67095761 CAAATGCCTTCAGGA-CATAGCCCGGTTATAGTAGCTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCC-TCCGGAGCTTAGCCCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGCCCG
67095825 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
* * *
67095841 CCAATGCCTCCGG-GCTTAGCCCGGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCT
1 CAAATGCCTCCGGAGCTTAGCCC-GGATATAGT-ACTCGCACAAATGCCTTCGGGA-CTTAGCCC
67095903 GGATTTAGTAACTCGCA
63 GGATTTAGTAACTCGCA
* * * *
67095920 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTCCGGAGCTTAGCCCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCG
67095984 GA
64 GA
67095986 CATCATTTGA
Statistics
Matches: 122, Mismatches: 15, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
78 3 0.02
79 69 0.57
80 39 0.32
81 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTCCGGAGCTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TTTAGTAACTCGCA
Found at i:67095985 original size:40 final size:40
Alignment explanation
Indices: 67095761--67095985 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
67095751 GCTACTCATT
* * * *
67095761 CAAATGCCTTCAGGACATAGCCCGGTTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
67095801 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
67095841 CCAATGCCTCCGGG-CTTAGCCCGGGAT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGATATAGTAACTCGCA
* * *
67095880 CAAATGCCTTC-GGATCTTAGTCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTCGCA
* * *
67095920 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
67095961 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67095986 CATCATTTGA
Statistics
Matches: 161, Mismatches: 18, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 116 0.72
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:67119246 original size:163 final size:162
Alignment explanation
Indices: 67119038--67119361 Score: 594
Period size: 163 Copynumber: 2.0 Consensus size: 162
67119028 GGGACCCCGA
*
67119038 AGTCATTTGACTCTGTCCCCACCACTTCAAATATCTCATTATCAGCAATTCTTTTGCTTGCACAA
1 AGTCATTTGACTCTGTCCCCACCACTTCAAATATCTCATTATCAGCAATTCTTTTGCTTGAACAA
67119103 TTTCTTTTATAAGAAACTAGACTCATTAAGATTTAATTATATTATTTATTCAGCTTCTAATTCAA
66 TTTCTTTTATAAGAAACTAGACTCATTAAGATTTAATTATATTATTTATTCAGCTTCTAATTCAA
*
67119168 CTCCCACAATTTATGGTGATTTTCCGAAATCT
131 CTCCCACAATTTATGGTGATTTTCCAAAATCT
* *
67119200 AGTCATTTGACTTTGTCCCCCGCCACTTCAAATATCTCATTATCAGCAATTCTTTTGCTTGAACA
1 AGTCATTTGACTCTGT-CCCCACCACTTCAAATATCTCATTATCAGCAATTCTTTTGCTTGAACA
*
67119265 GTTTCTTTTATAAGAAACTAGACTCATTAAGATTTAATTATATTATTTATTCAGCTTCTAATTCA
65 ATTTCTTTTATAAGAAACTAGACTCATTAAGATTTAATTATATTATTTATTCAGCTTCTAATTCA
67119330 ACTCCCACAATTTATGGTGATTTTCCAAAATC
130 ACTCCCACAATTTATGGTGATTTTCCAAAATC
67119362 ACGTTACTGC
Statistics
Matches: 156, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
162 15 0.10
163 141 0.90
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (162 bp):
AGTCATTTGACTCTGTCCCCACCACTTCAAATATCTCATTATCAGCAATTCTTTTGCTTGAACAA
TTTCTTTTATAAGAAACTAGACTCATTAAGATTTAATTATATTATTTATTCAGCTTCTAATTCAA
CTCCCACAATTTATGGTGATTTTCCAAAATCT
Found at i:67120009 original size:43 final size:43
Alignment explanation
Indices: 67119936--67120105 Score: 186
Period size: 43 Copynumber: 4.0 Consensus size: 43
67119926 TTTTATCAAA
* **
67119936 TCACCGGCATT-TTGCCTGCTAGGCTTGAAGCCCGATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCATT
* *
67119978 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATTATC
1 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCATT
*
67120021 TCACCGGCATTATAGCTTGCTAGGCCCGAAGCCCGATAAT-ATTAT
1 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGAT-ATCA-T-T
* * * *
67120066 TCACCAGC-TTAAAGCTTGCTAGG-CCGAGGCCCGAATATCA
1 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCG-ATATCA
67120106 CATTTCGATA
Statistics
Matches: 112, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
42 11 0.10
43 74 0.66
44 20 0.18
45 7 0.06
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.25
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCATT
Found at i:67122994 original size:28 final size:28
Alignment explanation
Indices: 67122948--67123016 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
67122938 TTTAAAACCC
*
67122948 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
67122975 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
67123003 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
67123017 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:67124667 original size:20 final size:20
Alignment explanation
Indices: 67124644--67124681 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67124634 CACATCCAAA
*
67124644 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
67124664 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
67124682 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:67131002 original size:28 final size:28
Alignment explanation
Indices: 67130956--67131024 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
67130946 TTTAAAACCC
*
67130956 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
67130983 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
67131011 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
67131025 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:67132676 original size:20 final size:20
Alignment explanation
Indices: 67132653--67132690 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67132643 CACATCCAAA
*
67132653 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
67132673 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
67132691 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:67133690 original size:42 final size:42
Alignment explanation
Indices: 67133643--67133725 Score: 148
Period size: 42 Copynumber: 2.0 Consensus size: 42
67133633 ATAAAATGTA
*
67133643 GTTAAAATTCTTATATTCAAGCTCCTAAAGTGCAAAAACTAT
1 GTTAAAATGCTTATATTCAAGCTCCTAAAGTGCAAAAACTAT
*
67133685 GTTAAAATGCTTATATTCAAGCTCTTAAAGTGCAAAAACTA
1 GTTAAAATGCTTATATTCAAGCTCCTAAAGTGCAAAAACTA
67133726 GTTTAATCTG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.33
Consensus pattern (42 bp):
GTTAAAATGCTTATATTCAAGCTCCTAAAGTGCAAAAACTAT
Found at i:67136413 original size:25 final size:25
Alignment explanation
Indices: 67136385--67136443 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
67136375 AAAATAAGGT
67136385 GAAAGGATTGCTTGATATGTGATGA
1 GAAAGGATTGCTTGATATGTGATGA
67136410 GAAAGGATTGCTTGATATGTGATGA
1 GAAAGGATTGCTTGATATGTGATGA
*
67136435 AAAAGGATT
1 GAAAGGATT
67136444 CATGAAGTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.36, C:0.03, G:0.31, T:0.31
Consensus pattern (25 bp):
GAAAGGATTGCTTGATATGTGATGA
Found at i:67143006 original size:40 final size:39
Alignment explanation
Indices: 67142946--67143109 Score: 141
Period size: 40 Copynumber: 4.1 Consensus size: 39
67142936 CAAAATTTAG
* **
67142946 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAA-TGCCTTCGGGTCTTAAC
* *** * *
67142986 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAAC
*
67143026 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAAC
* * * * *
67143066 CCAGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAAC
67143106 CCGG
1 CCGG
67143110 GTATCATTCA
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
40 99 0.97
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
CCGGATATAACAACTCGCACAATGCCTTCGGGTCTTAAC
Found at i:67143090 original size:80 final size:80
Alignment explanation
Indices: 67142942--67143109 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 80
67142932 TCTTCAAAAT
* * * ** *
67142942 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCAGATATAATAACTAGCAC
*
67143006 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGAC
** * *
67143021 TTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCAGATATAATCACTAGCA
1 TTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCAGATATAATAACTAGCA
*
67143085 TAAATGCCTTCGGGAC
65 CAAATGCCTTCGGGAC
67143101 TTAGCCCGG
1 TTAGCCCGG
67143110 GTATCATTCA
Statistics
Matches: 75, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
79 4 0.05
80 69 0.92
81 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCAGATATAATAACTAGCAC
AAATGCCTTCGGGAC
Found at i:67169775 original size:80 final size:79
Alignment explanation
Indices: 67169643--67169791 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
67169633 ATTGAATGAT
*
67169643 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATT
1 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
67169708 GTGCTAGTGGCTAC
66 GTGCTAGTGGCTAC
* * * *
67169722 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
67169785 TTTGTGC
63 ATTGTGC
67169792 ACGTGATTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 16 0.26
80 45 0.74
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (79 bp):
ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
GTGCTAGTGGCTAC
Found at i:67169805 original size:40 final size:40
Alignment explanation
Indices: 67169641--67169807 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
67169631 AAATTGAATG
* * *
67169641 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGAGATT
* * * **
67169680 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAGATT
* *
67169720 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGAGATT
* * *
67169760 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GAGATT
67169800 ATATCCGG
1 ATATCCGG
67169808 TTATATTCCG
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 17 0.17
40 83 0.81
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAGATT
Found at i:67169806 original size:80 final size:79
Alignment explanation
Indices: 67169641--67169807 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
67169631 AAATTGAATG
*
67169641 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
67169706 TTGTGCTAGTGGCT
66 TTGTGCTAGTGACT
* * * * *
67169720 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
67169783 CATTTGTGC-ACGTGATT
63 CAATTGTGCTA-GTGACT
67169800 ATATCCGG
1 ATATCCGG
67169808 TTATATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 18 0.24
80 56 0.76
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGACT
Found at i:67171433 original size:66 final size:66
Alignment explanation
Indices: 67171384--67171532 Score: 244
Period size: 66 Copynumber: 2.3 Consensus size: 66
67171374 ATGATCGAGG
* * *
67171384 ACACGCCCGTGTGCCAGATGATGTGAAATCTAAGGGAGGTTATTGACTTGGGTCACACAGCCGGC
1 ACACGCCCATGTGCCAGACGATGTGAAATCTAAGGGAGGTTATTGACTTGGATCACACAGCCGGC
67171449 C
66 C
* * *
67171450 ACACGCTCATGTGCCAGACGATGTGAAATCTAAGGGAGGTTATTGACTTGGGTCACACGGCCGGC
1 ACACGCCCATGTGCCAGACGATGTGAAATCTAAGGGAGGTTATTGACTTGGATCACACAGCCGGC
67171515 C
66 C
67171516 ACACGCCCATGTGCCAG
1 ACACGCCCATGTGCCAG
67171533 CCTGTGTGCC
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 78 1.00
ACGTcount: A:0.24, C:0.26, G:0.30, T:0.20
Consensus pattern (66 bp):
ACACGCCCATGTGCCAGACGATGTGAAATCTAAGGGAGGTTATTGACTTGGATCACACAGCCGGC
C
Found at i:67175656 original size:25 final size:26
Alignment explanation
Indices: 67175615--67175663 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
67175605 ATTTTTTAAT
67175615 ATTTATATTATAATATAATATAAAAC
1 ATTTATATTATAATATAATATAAAAC
*
67175641 ATTTAT-TTATCATATAATATAAA
1 ATTTATATTATAATATAATATAAA
67175664 TTAAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (26 bp):
ATTTATATTATAATATAATATAAAAC
Found at i:67175669 original size:30 final size:30
Alignment explanation
Indices: 67175613--67175678 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
67175603 ATATTTTTTA
*
67175613 ATATTTATATTATAATATAATATAAAACAT
1 ATATTTATATTATAATATAATATAAAAAAT
*
67175643 TTATTTATCA-TATAATATAA-ATTAAAAAAT
1 ATATTTAT-ATTATAATATAATA-TAAAAAAT
67175673 ATATTT
1 ATATTT
67175679 TAAACTCGAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
29 1 0.03
30 29 0.94
31 1 0.03
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (30 bp):
ATATTTATATTATAATATAATATAAAAAAT
Found at i:67178436 original size:5 final size:5
Alignment explanation
Indices: 67178426--67178474 Score: 64
Period size: 5 Copynumber: 9.6 Consensus size: 5
67178416 CGGCAGTTAC
*
67178426 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTTT ACTTT -TTTT ACTTTT ATT
1 ATTTT ATTTT ATTTT ATTTT ATTTT A-TTTT ATTTT ATTTT A-TTTT ATT
67178475 ACTGCTGTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
4 3 0.08
5 26 0.67
6 10 0.26
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:67178798 original size:17 final size:17
Alignment explanation
Indices: 67178778--67178815 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
67178768 TAAAAATATT
67178778 TAAAAATAAAAAAAATA
1 TAAAAATAAAAAAAATA
*
67178795 TAAAAATAATAAAAATA
1 TAAAAATAAAAAAAATA
67178812 -AAAA
1 TAAAA
67178816 GAGAAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (17 bp):
TAAAAATAAAAAAAATA
Found at i:67178872 original size:8 final size:8
Alignment explanation
Indices: 67178844--67178913 Score: 50
Period size: 8 Copynumber: 7.9 Consensus size: 8
67178834 TTAAAATTGG
*
67178844 TATAAACT
1 TATAAAAT
*
67178852 TATTAAAAC
1 TA-TAAAAT
67178861 TATAAAAT
1 TATAAAAT
67178869 TATAAAATAAT
1 TAT--AA-AAT
67178880 TATAAAATTT
1 TATAAAA--T
67178890 TATAAATAT
1 TATAAA-AT
*
67178899 TATAAAAA
1 TATAAAAT
67178907 TATAAAA
1 TATAAAA
67178914 AATTAACAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
8 20 0.39
9 15 0.29
10 9 0.18
11 7 0.14
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (8 bp):
TATAAAAT
Found at i:67178882 original size:11 final size:10
Alignment explanation
Indices: 67178867--67178933 Score: 59
Period size: 11 Copynumber: 6.8 Consensus size: 10
67178857 AAACTATAAA
67178867 ATTATAAAAT
1 ATTATAAAAT
67178877 AATTATAAAAT
1 -ATTATAAAAT
*
67178888 TTTAT-AAAT
1 ATTATAAAAT
67178897 ATTATAAAA-
1 ATTATAAAAT
*
67178906 A-TATAAAAA
1 ATTATAAAAT
*
67178915 ATTAACAAAAT
1 ATT-ATAAAAT
*
67178926 ATAATAAA
1 ATTATAAA
67178934 TCATAAAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
8 7 0.15
9 10 0.22
10 12 0.26
11 17 0.37
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.34
Consensus pattern (10 bp):
ATTATAAAAT
Found at i:67178885 original size:19 final size:19
Alignment explanation
Indices: 67178861--67178918 Score: 75
Period size: 19 Copynumber: 3.1 Consensus size: 19
67178851 TTATTAAAAC
67178861 TATAAAATTATAAAATAAT
1 TATAAAATTATAAAATAAT
*
67178880 TATAAAATTTTATAAAT-AT
1 TATAAAATTATA-AAATAAT
*
67178899 TATAAAAATATAAAA-AAT
1 TATAAAATTATAAAATAAT
67178917 TA
1 TA
67178919 ACAAAATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 7 0.21
19 23 0.68
20 4 0.12
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
TATAAAATTATAAAATAAT
Found at i:67178925 original size:29 final size:28
Alignment explanation
Indices: 67178893--67178949 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
67178883 AAAATTTTAT
*
67178893 AAATATTATAAAAAT-ATAAAAAATTAACA
1 AAATA-TA-AAAAATCATAAAAAAATAACA
*
67178922 AAATATAATAAATCATAAAAAAATAACA
1 AAATATAAAAAATCATAAAAAAATAACA
67178950 TTAATAAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 5 0.20
28 15 0.60
29 5 0.20
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (28 bp):
AAATATAAAAAATCATAAAAAAATAACA
Found at i:67178925 original size:38 final size:38
Alignment explanation
Indices: 67178861--67178985 Score: 106
Period size: 38 Copynumber: 3.4 Consensus size: 38
67178851 TTATTAAAAC
*
67178861 TATAAAATTATAAAATAATT-ATAAAATTTTATAAATAT
1 TATAAAAATATAAAA-AATTAATAAAATTTTATAAATAT
* * *
67178899 TATAAAAATATAAAAAATTAACAAAATATAATAAATCA-
1 TATAAAAATATAAAAAATTAATAAAATTTTATAAAT-AT
*
67178937 TA-AAAAA-AT--AACATTAATAAAACTTATTA-AAATAT
1 TATAAAAATATAAAAAATTAATAAAA-TT-TTATAAATAT
67178972 T-TAAAAAT-TAAAAA
1 TATAAAAATATAAAAA
67178986 TTCTTAAAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
34 12 0.17
35 12 0.17
36 4 0.06
37 11 0.16
38 29 0.42
39 1 0.01
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (38 bp):
TATAAAAATATAAAAAATTAATAAAATTTTATAAATAT
Found at i:67178946 original size:20 final size:18
Alignment explanation
Indices: 67178864--67178946 Score: 58
Period size: 18 Copynumber: 4.4 Consensus size: 18
67178854 TTAAAACTAT
* *
67178864 AAAATTATAAAATAATTAT
1 AAAAATATAAAA-AATTAA
* * * *
67178883 AAAATTTTATAAATATTAT
1 AAAAATATA-AAAAATTAA
67178902 AAAAATATAAAAAATTAA
1 AAAAATATAAAAAATTAA
* *
67178920 CAAAATATAATAAATCATAA
1 AAAAATATAAAAAAT--TAA
67178940 AAAAATA
1 AAAAATA
67178947 ACATTAATAA
Statistics
Matches: 52, Mismatches: 9, Indels: 5
0.79 0.14 0.08
Matches are distributed among these distances:
18 20 0.38
19 20 0.38
20 12 0.23
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAAATATAAAAAATTAA
Found at i:67179025 original size:32 final size:32
Alignment explanation
Indices: 67178983--67179046 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
67178973 TAAAAATTAA
*
67178983 AAATTCTTAAAAAATAATAAAAATTG-TAAAAC
1 AAATTATTAAAAAAT-ATAAAAATTGCTAAAAC
*
67179015 AAATTATTAAAAAATATTAAAATTGCTAAAAC
1 AAATTATTAAAAAATATAAAAATTGCTAAAAC
67179047 TTATAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 9 0.31
32 20 0.69
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.30
Consensus pattern (32 bp):
AAATTATTAAAAAATATAAAAATTGCTAAAAC
Found at i:67179034 original size:10 final size:10
Alignment explanation
Indices: 67178893--67179036 Score: 52
Period size: 10 Copynumber: 14.1 Consensus size: 10
67178883 AAAATTTTAT
67178893 AAATATTATAA
1 AAATATTA-AA
67178904 AAATA-T-AA
1 AAATATTAAA
67178912 AAA-ATTAACA
1 AAATATTAA-A
*
67178922 AAATA-TAAT
1 AAATATTAAA
*
67178931 AAATCATAAAA
1 AAAT-ATTAAA
67178942 AAATAACATTAATA
1 AAAT---ATTAA-A
67178956 AAACTTATT--A
1 AAA--TATTAAA
*
67178966 AAATATT-TA
1 AAATATTAAA
67178975 AAA-ATTAAA
1 AAATATTAAA
* *
67178984 AATTCTTAAA
1 AAATATTAAA
*
67178994 AAATAATAAA
1 AAATATTAAA
* * *
67179004 AATTGTAAAA
1 AAATATTAAA
67179014 CAAATTATTAAA
1 -AAA-TATTAAA
67179026 AAATATTAAA
1 AAATATTAAA
67179036 A
1 A
67179037 TTGCTAAAAC
Statistics
Matches: 100, Mismatches: 17, Indels: 33
0.67 0.11 0.22
Matches are distributed among these distances:
7 1 0.01
8 13 0.13
9 12 0.12
10 39 0.39
11 17 0.17
12 5 0.05
13 8 0.08
14 4 0.04
16 1 0.01
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.30
Consensus pattern (10 bp):
AAATATTAAA
Found at i:67179053 original size:9 final size:10
Alignment explanation
Indices: 67178949--67179065 Score: 66
Period size: 10 Copynumber: 12.1 Consensus size: 10
67178939 AAAAAATAAC
*
67178949 ATTAATAAAA
1 ATTATTAAAA
*
67178959 CTTATT-AAA
1 ATTATTAAAA
*
67178968 A-TATTTAAA
1 ATTATTAAAA
67178977 A--ATTAAAA
1 ATTATTAAAA
*
67178985 ATTCTTAAAA
1 ATTATTAAAA
* *
67178995 AATAATAAAA
1 ATTATTAAAA
* *
67179005 ATTGTAAAACAA
1 ATTAT-TAA-AA
67179017 ATTATTAAAA
1 ATTATTAAAA
*
67179027 AATATT-AAA
1 ATTATTAAAA
**
67179036 ATTGCTAAAA
1 ATTATTAAAA
*
67179046 CTTA-TAAAA
1 ATTATTAAAA
67179055 ATTATTAAAA
1 ATTATTAAAA
67179065 A
1 A
67179066 ATCATAAAAA
Statistics
Matches: 79, Mismatches: 21, Indels: 14
0.69 0.18 0.12
Matches are distributed among these distances:
8 11 0.14
9 21 0.27
10 37 0.47
11 4 0.05
12 6 0.08
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (10 bp):
ATTATTAAAA
Found at i:67179063 original size:19 final size:19
Alignment explanation
Indices: 67178896--67179075 Score: 82
Period size: 19 Copynumber: 9.9 Consensus size: 19
67178886 ATTTTATAAA
67178896 TATTATAAAAATATAAAAA-
1 TATTA-AAAAATATAAAAAT
67178915 -ATTAACAAAATATAATAAAT
1 TATTAA-AAAATATAA-AAAT
* *
67178935 CA-TAAAAAA-AT-AACAT
1 TATTAAAAAATATAAAAAT
* ** *
67178951 TAATAAAACTTATTAAAA-
1 TATTAAAAAATATAAAAAT
*
67178969 TATTTAAAAAT-TAAAAAT
1 TATTAAAAAATATAAAAAT
*
67178987 TCTTAAAAAATAATAAAAAT
1 TATTAAAAAAT-ATAAAAAT
* *
67179007 T-GT----AA-A-ACAAAT
1 TATTAAAAAATATAAAAAT
*
67179019 TATTAAAAAATATTAAAAT
1 TATTAAAAAATATAAAAAT
** **
67179038 TGCTAAAACTTATAAAAAT
1 TATTAAAAAATATAAAAAT
67179057 TATTAAAAAATCATAAAAA
1 TATTAAAAAAT-ATAAAAA
67179076 CTTGAACTGG
Statistics
Matches: 117, Mismatches: 26, Indels: 35
0.66 0.15 0.20
Matches are distributed among these distances:
12 6 0.05
13 2 0.02
15 2 0.02
16 4 0.03
17 14 0.12
18 34 0.29
19 36 0.31
20 18 0.15
21 1 0.01
ACGTcount: A:0.63, C:0.05, G:0.01, T:0.31
Consensus pattern (19 bp):
TATTAAAAAATATAAAAAT
Found at i:67179627 original size:27 final size:28
Alignment explanation
Indices: 67179593--67179717 Score: 91
Period size: 28 Copynumber: 4.5 Consensus size: 28
67179583 ATAATATTAA
*
67179593 TTTTATATTTTTAAAGTTTTTATAGT-T
1 TTTTATATTTTTAAAGTTTTTATAATAT
* *
67179620 TTTTATA-TTTTATATTTTTGTATAAT-T
1 TTTTATATTTTTAAAGTTTT-TATAATAT
* * * *
67179647 TATTAGATTTTT-TAGTTTTTTTATAATAC
1 TTTTATATTTTTAAAG--TTTTTATAATAT
*
67179676 TTTT-TATTTTTATAAGTTTTTAT-CTAT
1 TTTTATATTTTTA-AAGTTTTTATAATAT
*
67179703 TTTCATATTTTTAAA
1 TTTTATATTTTTAAA
67179718 AATTTAAAAT
Statistics
Matches: 77, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
26 10 0.13
27 27 0.35
28 31 0.40
29 7 0.09
30 2 0.03
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.66
Consensus pattern (28 bp):
TTTTATATTTTTAAAGTTTTTATAATAT
Found at i:67179630 original size:9 final size:9
Alignment explanation
Indices: 67179593--67179671 Score: 58
Period size: 9 Copynumber: 8.8 Consensus size: 9
67179583 ATAATATTAA
67179593 TTTTATA-T
1 TTTTATATT
* *
67179601 TTTTAAAGT
1 TTTTATATT
67179610 TTTTATAGTT
1 TTTTATA-TT
67179620 TTTTATA--
1 TTTTATATT
67179627 TTTTATATT
1 TTTTATATT
67179636 TTTGTATAATT
1 TTT-TAT-ATT
* *
67179647 TATTAGATT
1 TTTTATATT
67179656 TTTTAGT-TT
1 TTTTA-TATT
67179665 TTTTATA
1 TTTTATA
67179672 ATACTTTTTA
Statistics
Matches: 56, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
7 7 0.12
8 7 0.12
9 24 0.43
10 13 0.23
11 5 0.09
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.68
Consensus pattern (9 bp):
TTTTATATT
Found at i:67182026 original size:17 final size:17
Alignment explanation
Indices: 67182004--67182046 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
67181994 GGGGTCATGT
67182004 GGGCCCAATGGGCCTAC
1 GGGCCCAATGGGCCTAC
67182021 GGGCCCAATGGGCCTAC
1 GGGCCCAATGGGCCTAC
67182038 GGGCCCAAT
1 GGGCCCAAT
67182047 TGGATAAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.19, C:0.35, G:0.35, T:0.12
Consensus pattern (17 bp):
GGGCCCAATGGGCCTAC
Found at i:67182256 original size:27 final size:27
Alignment explanation
Indices: 67182218--67182559 Score: 286
Period size: 27 Copynumber: 12.6 Consensus size: 27
67182208 TTAGTTTACC
* * *
67182218 AAATTACTAAAATGCCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
67182245 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
*
67182272 AAATTACCAAAATAACCCT-GGTTTGTA
1 AAATTACCAAAAT-ACCCTCGATTTGTA
*
67182299 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
*
67182326 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
** * * *
67182353 AAATTACTGAAATATCCTCAACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * **
67182380 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
67182407 AAATTACCAAAAATACCCAT-GGTTT-TA
1 AAATTACC-AAAATACCC-TCGATTTGTA
* *
67182434 AAATTACCAAAACACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
**
67182461 AAATTACCAAAATACCCTC-AGTTTACA
1 AAATTACCAAAATACCCTCGA-TTTGTA
***
67182488 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
** *
67182515 AAATTACTGAAATACCCTCGACTTGTAA
1 AAATTACCAAAATACCCTCGATTTGT-A
*
67182543 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
67182560 CTAATTTATA
Statistics
Matches: 261, Mismatches: 39, Indels: 29
0.79 0.12 0.09
Matches are distributed among these distances:
26 18 0.07
27 206 0.79
28 36 0.14
29 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:67182357 original size:81 final size:81
Alignment explanation
Indices: 67182244--67182561 Score: 331
Period size: 81 Copynumber: 3.9 Consensus size: 81
67182234 CTCAATTTGT
* * **
67182244 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATAACCCT-GGTTTGTAAAATTACCA
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAAT-ACCCTCGACTTGTAAAATTACCA
**
67182308 AAATACCCCTGGTTTGT
65 AAATACCCCTGGTTTAC
* ** * *
67182325 AAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATATCCTCAACTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGACTTGTAAAATTACCAA
*
67182390 AATACCCTTGGTTTAC
66 AATACCCCTGGTTTAC
* * * * *
67182406 AAAATTACCAAAAATACCCATGGTTT-TAAAATTACCAAAACACCC-CTGATTTGTGAAATTACC
1 AAAATTACC-AAAATACCCCTGATTTGTAAAATTACCAAAATACCCTC-GACTTGTAAAATTACC
*
67182469 AAAATA-CCCTCAGTTTAC
64 AAAATACCCCT-GGTTTAC
*** **
67182487 AAAATTATTGAAATA-CCCTCGATTTGTAAAATTACTGAAATACCCTCGACTTGTAAAAATTACC
1 AAAATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCCTCGACTTGT-AAAATTACC
*
67182551 AAAGTACCCCT
64 AAAATACCCCT
67182562 AATTTATAGA
Statistics
Matches: 193, Mismatches: 35, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
79 3 0.02
80 17 0.09
81 141 0.73
82 28 0.15
83 4 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGACTTGTAAAATTACCAA
AATACCCCTGGTTTAC
Found at i:67182410 original size:108 final size:108
Alignment explanation
Indices: 67182267--67182467 Score: 334
Period size: 108 Copynumber: 1.9 Consensus size: 108
67182257 TACCCCTGGT
** *
67182267 TTGTAAAATTACCAAAATAACCCTGGTTTGTAAAATTACC-AAAATACCCCTGGTTTGTAAAATT
1 TTGTAAAATTACCAAAATAACCCTGGTTTACAAAATTACCAAAAATACCCATGGTTT-TAAAATT
*
67182331 ACCAAAATACCCCTGATTTGTGAAATTACTGAAATATCCTCAAC
65 ACCAAAACACCCCTGATTTGTGAAATTACTGAAATATCCTCAAC
67182375 TTGTAAAATTACCAAAAT-ACCCTTGGTTTACAAAATTACCAAAAATACCCATGGTTTTAAAATT
1 TTGTAAAATTACCAAAATAACCC-TGGTTTACAAAATTACCAAAAATACCCATGGTTTTAAAATT
67182439 ACCAAAACACCCCTGATTTGTGAAATTAC
65 ACCAAAACACCCCTGATTTGTGAAATTAC
67182468 CAAAATACCC
Statistics
Matches: 87, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
107 4 0.05
108 68 0.78
109 15 0.17
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (108 bp):
TTGTAAAATTACCAAAATAACCCTGGTTTACAAAATTACCAAAAATACCCATGGTTTTAAAATTA
CCAAAACACCCCTGATTTGTGAAATTACTGAAATATCCTCAAC
Found at i:67182612 original size:27 final size:26
Alignment explanation
Indices: 67182470--67182614 Score: 87
Period size: 27 Copynumber: 5.3 Consensus size: 26
67182460 GAAATTACCA
*
67182470 AAATACCCTCAGTTTACAAAATTATTG
1 AAATACCCTCAATTTACAAAATTA-TG
* **
67182497 AAATACCCTCGATTTGTAAAATTACTG
1 AAATACCCTCAATTTACAAAATTA-TG
* **
67182524 AAATACCCTCGACTTGTA-AAAATTACC
1 AAATACCCTC-AATT-TACAAAATTATG
* * **
67182551 AAAGTACCC-CTAATTTATAGAATTACC
1 AAA-TACCCTC-AATTTACAAAATTATG
**
67182578 ATTTTACCCTCAATTTACAAAATTATTG
1 A-AATACCCTCAATTTACAAAATTA-TG
67182606 AAATACCCT
1 AAATACCCT
67182615 TGTAGGGTAG
Statistics
Matches: 90, Mismatches: 21, Indels: 14
0.72 0.17 0.11
Matches are distributed among these distances:
26 2 0.02
27 71 0.79
28 16 0.18
29 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.32
Consensus pattern (26 bp):
AAATACCCTCAATTTACAAAATTATG
Found at i:67182628 original size:27 final size:27
Alignment explanation
Indices: 67182598--67182736 Score: 192
Period size: 27 Copynumber: 5.2 Consensus size: 27
67182588 CAATTTACAA
* *
67182598 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
67182625 AATTACCGAAATA-CCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
67182651 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
67182678 AATTACCGAAATACCCTTGTAGGGCA-
1 AATTACTGAAATACCCCTGTAGGGTAG
*
67182704 ACATTACTGAAATACCCCTGTATGGTAG
1 A-ATTACTGAAATACCCCTGTAGGGTAG
67182732 AATTA
1 AATTA
67182737 TTGGGGTAAA
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
26 25 0.26
27 72 0.73
28 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:67182629 original size:109 final size:109
Alignment explanation
Indices: 67182433--67182641 Score: 269
Period size: 109 Copynumber: 1.9 Consensus size: 109
67182423 CCATGGTTTT
* * *
67182433 AAAATTACCAAAACACCCCTGATTTGTGAAATTACCAAAATACCCTCAGTTTACAAAATTATTGA
1 AAAATTACCAAAACACCCCTAATTTATGAAATTACCAAAATACCCTCAATTTACAAAATTATTGA
** *
67182498 AATACCCTCGATTTGTAAAATTACTGAAATACCCTCGACTTGTA
66 AATACCCTCGATGGGTAAAATTACCGAAATACCCTCGACTTGTA
** ***
67182542 AAAATTACCAAAGTACCCCTAATTTAT-AGAATTACCATTTTACCCTCAATTTACAAAATTATTG
1 AAAATTACCAAAACACCCCTAATTTATGA-AATTACCAAAATACCCTCAATTTACAAAATTATTG
* *
67182606 AAATACCCTTG-TAGGGTAGAATTACCGAAATACCCT
65 AAATACCCTCGAT-GGGTAAAATTACCGAAATACCCT
67182642 GTAGGGTAGA
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
108 2 0.02
109 83 0.98
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (109 bp):
AAAATTACCAAAACACCCCTAATTTATGAAATTACCAAAATACCCTCAATTTACAAAATTATTGA
AATACCCTCGATGGGTAAAATTACCGAAATACCCTCGACTTGTA
Found at i:67182672 original size:53 final size:53
Alignment explanation
Indices: 67182597--67182736 Score: 219
Period size: 53 Copynumber: 2.6 Consensus size: 53
67182587 TCAATTTACA
* * *
67182597 AAATTATTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCC-TGTAGGGT
1 AAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGC
67182649 AGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGC
1 A-AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGC
*
67182703 AACATTACTGAAATACCCCTGTATGGTAGAATTA
1 AA-ATTACTGAAATACCCCTGTAGGGTAGAATTA
67182737 TTGGGGTAAA
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
52 1 0.01
53 42 0.52
54 38 0.47
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (53 bp):
AAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGC
Found at i:67182990 original size:25 final size:25
Alignment explanation
Indices: 67182956--67183050 Score: 163
Period size: 25 Copynumber: 3.8 Consensus size: 25
67182946 AGGAAGTGCT
67182956 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
67182981 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* * *
67183006 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
67183031 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
67183051 ATTAAAAGAG
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 66 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:67183063 original size:24 final size:24
Alignment explanation
Indices: 67182956--67183086 Score: 129
Period size: 25 Copynumber: 5.2 Consensus size: 24
67182946 AGGAAGTGCT
*
67182956 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTA-TG
*
67182981 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTA-TG
* *
67183006 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTAT-G
*
67183031 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATG
**
67183054 AAAAGAGGCTAGGCCTCCAGTTATATG
1 AAAAG-GGCTTTGCC-CCAGTT-TATG
67183081 ATAAAG
1 A-AAAG
67183087 CAGCTATGCT
Statistics
Matches: 92, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
23 5 0.05
24 11 0.12
25 67 0.73
26 1 0.01
27 4 0.04
28 4 0.04
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATG
Found at i:67186954 original size:43 final size:43
Alignment explanation
Indices: 67186893--67187046 Score: 159
Period size: 43 Copynumber: 3.6 Consensus size: 43
67186883 CAATGCCATA
* *
67186893 TCCCAGATATGGTCTTACATGTTATCACATATCAATACCAATG
1 TCCCAGACATGGTCTTACATGTAATCACATATCAATACCAATG
* * * * *
67186936 TCCCAGACATGGTCTTACACT-AAATCATATAACGATGCCAATG
1 TCCCAGACATGGTCTTACA-TGTAATCACATATCAATACCAATG
* * ** *
67186979 TTCTAGACATGGTCTTACACATAATCACA-ATACAATTCCAATG
1 TCCCAGACATGGTCTTACATGTAATCACATAT-CAATACCAATG
*
67187022 TCCCATACATGGTCTTACATGTAAT
1 TCCCAGACATGGTCTTACATGTAAT
67187047 TTCATCTTTG
Statistics
Matches: 88, Mismatches: 20, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
42 1 0.01
43 86 0.98
44 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.12, T:0.31
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAATCACATATCAATACCAATG
Found at i:67192023 original size:46 final size:45
Alignment explanation
Indices: 67191938--67192105 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 45
67191928 ATCTTGTAGT
* *
67191938 CGATGCATGTCCCAGACATGTCTTATACTAGCTTACGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCCT-CGTCTCGAGGC
* * *
67191984 CAATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC-CTCGTCTCGAGGC
* * * * * * *
67192030 TGATGTCATGTCCTAGATATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGC-CTCGT-CTCGAGGC
67192078 CGATGCATGTCCCAGACATGTCTTACAC
1 CGATGCATGTCCCAGACATGTCTTACAC
67192106 CAGCTCACAA
Statistics
Matches: 99, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
46 51 0.52
47 25 0.25
48 22 0.22
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCCTCGTCTCGAGGC
Found at i:67201707 original size:26 final size:27
Alignment explanation
Indices: 67201678--67201737 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
67201668 CCACATATAT
*
67201678 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
67201704 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
67201731 ATATCTG
1 ATATCTG
67201738 GCAGCCTCGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:67214169 original size:40 final size:40
Alignment explanation
Indices: 67214075--67214299 Score: 260
Period size: 40 Copynumber: 5.6 Consensus size: 40
67214065 TATTTGAATG
*
67214075 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
67214116 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
67214156 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
67214196 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
67214236 ATATCCGGGCTAAG-TCTCGAAGGCATCTGTGCTAGTGACC
1 ATATCCGGGCTAAGATC-CGAAGGCATTTGTGCTAGTGACT
67214276 ATATCCGGGCTAAGA-CCTGAAGGC
1 ATATCCGGGCTAAGATCC-GAAGGC
67214300 CTTGTGCAAG
Statistics
Matches: 159, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
39 3 0.02
40 126 0.79
41 29 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:67214257 original size:80 final size:80
Alignment explanation
Indices: 67214075--67214335 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
67214065 TATTTGAATG
* * * * *
67214075 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCAAAGGC
*
67214140 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * *
67214156 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGACCCAAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCAAAGGCA
* *
67214221 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * ** *
67214236 ATATCCGGGCTAAGTCTCGAAGGCATCTGTGCTAGTGACCATATCCGGGCTAAGACCTGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCAAAGGCA
* * *
67214301 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
67214315 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
67214336 ATTACTTGAG
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 13 0.08
79 14 0.09
80 94 0.61
81 32 0.21
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCAAAGGCA
TTCGTGCGAGTCGCT
Found at i:67214289 original size:120 final size:121
Alignment explanation
Indices: 67214075--67214299 Score: 314
Period size: 120 Copynumber: 1.9 Consensus size: 121
67214065 TATTTGAATG
* * * *
67214075 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
*
67214140 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCGTGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* *
67214196 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCTCGAAGG
1 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATC-CGAAGG
* *
67214259 CA-TCTGTGCTAG-TGACCATATCCGGGCTAAGACCTGAAGGC
65 CATTC-GTGCGAGTTG-CCATATCCGGGCTAAGACCCGAAGGC
67214300 CTTGTGCAAG
Statistics
Matches: 92, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
119 6 0.07
120 55 0.60
121 31 0.34
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCGTGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:67216009 original size:29 final size:29
Alignment explanation
Indices: 67215981--67216083 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
67215971 CCTCCGAGCT
** * * *
67215981 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
67216010 TGCACACTTAGTGCTATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
67216039 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
67216068 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
67216084 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:67216023 original size:58 final size:58
Alignment explanation
Indices: 67215961--67216083 Score: 131
Period size: 58 Copynumber: 2.1 Consensus size: 58
67215951 CCACACACAC
* * * * **
67215961 AGTGCCATA-CCCTCCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACTT
1 AGTGCCATATACCTCC-AGCACGCACACCCAGTGCCATATATTTCCAGCACGCACACTT
* ** **
67216019 AGTGCTATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATACCTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACACTT
67216077 AGTGCCA
1 AGTGCCA
67216084 ATCTCGTCAC
Statistics
Matches: 52, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
58 49 0.94
59 3 0.06
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (58 bp):
AGTGCCATATACCTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACACTT
Done.