Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 219 of 410
Found at i:67223959 original size:29 final size:29
Alignment explanation
Indices: 67223931--67224033 Score: 152
Period size: 29 Copynumber: 3.6 Consensus size: 29
67223921 CCTCCGAGCT
** * * *
67223931 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
67223960 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
67223989 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
67224018 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
67224034 ATCTCGTCAC
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:67230378 original size:40 final size:40
Alignment explanation
Indices: 67230252--67230379 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 40
67230242 CATTTGAATG
* * *
67230252 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * * **
67230292 ATGTCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
67230332 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
67230372 GTATCCGG
1 ATATCCGG
67230380 TTAAATCCCG
Statistics
Matches: 67, Mismatches: 21, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:67237515 original size:24 final size:24
Alignment explanation
Indices: 67237488--67237540 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
67237478 CTATCTAGAT
* * *
67237488 CTTCTTGATATGGTTTTTTGTGAA
1 CTTCCTGATAAGGTTCTTTGTGAA
67237512 CTTCCTGATAAGGTTCTTTGTGAA
1 CTTCCTGATAAGGTTCTTTGTGAA
67237536 CTTCC
1 CTTCC
67237541 CGATTATGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.17, C:0.17, G:0.19, T:0.47
Consensus pattern (24 bp):
CTTCCTGATAAGGTTCTTTGTGAA
Found at i:67237562 original size:23 final size:22
Alignment explanation
Indices: 67237527--67237570 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
67237517 TGATAAGGTT
*
67237527 CTTTGTGAACTTCCCGATTATGG
1 CTTTATGAACTTCCCG-TTATGG
*
67237550 CTTTATGAGCTTCCCGTTATG
1 CTTTATGAACTTCCCGTTATG
67237571 TAGCCCGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.16, C:0.23, G:0.20, T:0.41
Consensus pattern (22 bp):
CTTTATGAACTTCCCGTTATGG
Found at i:67239990 original size:31 final size:32
Alignment explanation
Indices: 67239952--67240013 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 32
67239942 CTTTTCGATG
67239952 ATCTACAAGAAAAGAAAATAACTAAC-TAAGA
1 ATCTACAAGAAAAGAAAATAACTAACGTAAGA
67239983 ATCTACAAGAAAAGAAAATAACTAACGTAAG
1 ATCTACAAGAAAAGAAAATAACTAACGTAAG
67240014 CAAATAATGC
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 26 0.87
32 4 0.13
ACGTcount: A:0.60, C:0.13, G:0.11, T:0.16
Consensus pattern (32 bp):
ATCTACAAGAAAAGAAAATAACTAACGTAAGA
Found at i:67241949 original size:16 final size:16
Alignment explanation
Indices: 67241925--67241955 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67241915 TGTAACCACG
67241925 TTTTCATAAAATTTCA
1 TTTTCATAAAATTTCA
*
67241941 TTTTTATAAAATTTC
1 TTTTCATAAAATTTC
67241956 TTTAATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.10, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTTCATAAAATTTCA
Found at i:67262297 original size:28 final size:28
Alignment explanation
Indices: 67262236--67262333 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
67262226 TCACAAATTG
** * *
67262236 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
67262265 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
67262293 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
67262321 GCACTAAGTGTGC
1 GCACTAAGTGTGC
67262334 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:67269824 original size:28 final size:28
Alignment explanation
Indices: 67269763--67269860 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
67269753 TCACAAATTG
** * *
67269763 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
67269792 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
67269820 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
67269848 GCACTAAGTGTGC
1 GCACTAAGTGTGC
67269861 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:67274597 original size:17 final size:18
Alignment explanation
Indices: 67274575--67274608 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67274565 TTGGCATTTG
67274575 TATTCTA-CTATATCTGA
1 TATTCTATCTATATCTGA
*
67274592 TATTCTATCTGTATCTG
1 TATTCTATCTATATCTG
67274609 GCTATGGGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.24, C:0.18, G:0.09, T:0.50
Consensus pattern (18 bp):
TATTCTATCTATATCTGA
Found at i:67276111 original size:18 final size:18
Alignment explanation
Indices: 67276085--67276119 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
67276075 GAATTTGGAA
67276085 TGGAAAGAAGAGAGAAAG
1 TGGAAAGAAGAGAGAAAG
*
67276103 TGGAGAGAAGAGAGAAA
1 TGGAAAGAAGAGAGAAA
67276120 AGATGTGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.40, T:0.06
Consensus pattern (18 bp):
TGGAAAGAAGAGAGAAAG
Found at i:67279388 original size:760 final size:758
Alignment explanation
Indices: 67276570--67280614 Score: 6669
Period size: 759 Copynumber: 5.4 Consensus size: 758
67276560 AATTAATTCT
67276570 AGTTGATACTTCAAATTGCTTCTCAGTTTTGTGCTTCTAGCAGTGTCTGCCGAGCCATTTTTCGC
1 AGTTGATACTTCAAATTGCTTCTCAGTTTTGTGCTTCTAGCAGTGTCTGCCGAGCCATTTTTCGC
*
67276635 CCTTTGTGCAAATCTGTCGAAAATAACCAAAATTTATCAAAATTAATTATAAAATTAATTAAAAT
66 CCTTTGTGCAAATCTGTCGAAAATAACCAAAATTCATCAAAATTAATTATAAAATTAATTAAAAT
*
67276700 TCAACATGTTCATATTTTAAGTACACTTTAATTATTTTATAAAAATTAATTATTTTCCAACAGGA
131 TCAACATGTTCATATTTTAAGTACACTTTAATTATTTTATAAAAATTAATTATTTTCCGACAGGA
* * * * *
67276765 ATTTTATCGAAACTGTATGAATTTAAGTTAAAAAAGGCATGTAAAAGTGTGTCAATTTTCATGTT
196 ATTTTACCGAAACTGCATGAATTTAAGTTAAAAAGGGCATGAAAAAGTGTGTCAATTTTCGTGTT
*
67276830 TCCACACCCCCAAACTTAATTCACTGCTCGTCCCGAGTAATACATAAATTTGAAAAGAATTTCTC
261 TCCACACCCCCAAACTTAATTCATTGCTCGTCCCGAGTAATACATAAATTTGAAAAGAATTTCTC
* *
67276895 AGAAACACCTTTGAAGACCCCTTCAGGACAACATTCTTCCCAAAATTATGAATTTAATATACTTA
326 AGAAACACCTTTGAAGACTCCTTCAGGACAACATTCTTCCCAGAATTATGAATTTAATATACTTA
* *
67276960 TGCTCAAAAACAAGAAATTTGATAGTTATGCTATTTAAGTATACATACCATTCAAATTAATCTCA
391 TGCTCAAAAACAAGAAATTTGATAGTTATGCTACTTAAGTATACATATCATTCAAATTAATCTCA
*
67277025 ACAACTATTTATGATAGCAAAATTAGACTAAATGCTTCCTTAACAACAGGATGTTGATATGAAGT
456 ACAACTA-TTATGATAGCAAAATTAGACTAAATGCTTCCTTAACAACGGGATGTTGATATGAAGT
* *
67277090 T-ACTTGAGTACGTCTACCAACTTCTTGAATTGAATTTCCTGCTTCTACTTCTAAAGTCTTTGAG
520 TGA-TTGAGTACGTCTA-CAACTTCTTGAATTGAATTTCCTACTTCTGCTTCTAAAGTCTTTGAG
*
67277154 GGTAGGGTGGTGGAGGTTTCTTTAATGGAACTGATTGATTCGTCTTTTGTGGTAATTCTGCATCT
583 GGTAGGGTGGTGGAGGTTTCTTTAATGGAACTGGTTGATTCGTCTTTTGTGGTAATTCTGCATCT
* *
67277219 AACGAACGGTCCAAAATTATGTGTATTAATTCATAATATAATTAATTTTAATTTATATCCAATTT
648 AACGGACGGTCCAAAATTATGAGTATTAATTCATAATATAATTAATTTTAATTTATATCCAATTT
* * *
67277284 AATTTACATTAAAAAATTATTACTAATAAATTATGAAAAGTGGTCC
713 AATTTGCATTAATAAATTATTATTAATAAATTATGAAAAGTGGTCC
*
67277330 AGTTGATACTTCAAATTGCTTCTCAGTTTTGTGCTTCTAGCAGTGTCTGTCGAGCCATTTTTCGC
1 AGTTGATACTTCAAATTGCTTCTCAGTTTTGTGCTTCTAGCAGTGTCTGCCGAGCCATTTTTCGC
* *
67277395 CCTTTGTGCAAATCTATCGAAAATAACCAAAATTCATCAAAATTAATTTTAAAATTAATTAAAAT
66 CCTTTGTGCAAATCTGTCGAAAATAACCAAAATTCATCAAAATTAATTATAAAATTAATTAAAAT
*
67277460 TCAAAATGTTCATATTTTAAGTACAC--------------------------TTTTCCGACAGGA
131 TCAACATGTTCATATTTTAAGTACACTTTAATTATTTTATAAAAATTAATTATTTTCCGACAGGA
*
67277499 ATTTTATCGAAACTGCATGAATTTAAGTTAAAAAGGGCATGAAAAAGTGTGTCAATTTTCGTGTT
196 ATTTTACCGAAACTGCATGAATTTAAGTTAAAAAGGGCATGAAAAAGTGTGTCAATTTTCGTGTT
*
67277564 TCCACACCCCCAAACTTAATTCATTACTCGTCCCGAGTAATACATAAATTTGAAAAGAATTTCTC
261 TCCACACCCCCAAACTTAATTCATTGCTCGTCCCGAGTAATACATAAATTTGAAAAGAATTTCTC
67277629 AGAAACACCTTTGAAGACTCCTTCAGGACAACATTCTTCCCAGAATTATGAATTTAATATACTTA
326 AGAAACACCTTTGAAGACTCCTTCAGGACAACATTCTTCCCAGAATTATGAATTTAATATACTTA
* *
67277694 TACTCAAAAACAATAAATTTGATAGTTATGCTACTTAAGTATACATATCATTCAAATTAATCTCA
391 TGCTCAAAAACAAGAAATTTGATAGTTATGCTACTTAAGTATACATATCATTCAAATTAATCTCA
67277759 ACAACTATTATGATAGCAAAATTAGACTAAATGCTTCCTTAACAACGGGATGTTGATATGAAGTT
456 ACAACTATTATGATAGCAAAATTAGACTAAATGCTTCCTTAACAACGGGATGTTGATATGAAGTT
* * *
67277824 GATTAAATATGTCTACGAACTTCTTGAATTGAATTTCCTACTTCTGCTTCTAAAGTCTTTGAGGG
521 GATTGAGTACGTCTAC-AACTTCTTGAATTGAATTTCCTACTTCTGCTTCTAAAGTCTTTGAGGG
67277889 TAGGGTGGTGGAGGTTTCTTTAATGGAACTGGTTGATTCGTCTTTTGTGGTAATTCTGCATCTAA
585 TAGGGTGGTGGAGGTTTCTTTAATGGAACTGGTTGATTCGTCTTTTGTGGTAATTCTGCATCTAA
*
67277954 CGGACGGTCCAAAATTATGTGTATTAATTCATAATATAATTAATTTTAATTTATATCCAATTTAA
650 CGGACGGTCCAAAATTATGAGTATTAATTCATAATATAATTAATTTTAATTTATATCCAATTTAA
* * ** *
67278019 TTTACATTAATCAATTATTACTT-GCAAATTCTGAAAAGTGGTCC
715 TTTGCATTAATAAATTATTA-TTAATAAATTATGAAAAGTGGTCC
* * *
67278063 AGTTGATACTTCAAATTGCTTCTCAGTTTTGTGCTTCTAGCGGTGTCTGCCGA-ACATTTTTCAC
1 AGTTGATACTTCAAATTGCTTCTCAGTTTTGTGCTTCTAGCAGTGTCTGCCGAGCCATTTTTCGC
* *
67278127 CTTTTGTGCAAATCTGTCGAAAATAACCAAAATTCATCAAAATTAATTTTAAAATTAATTAAAAT
66 CCTTTGTGCAAATCTGTCGAAAATAACCAAAATTCATCAAAATTAATTATAAAATTAATTAAAAT
67278192 TCAACATGTTCATATTTTAAGTACACTTTAATTATTTTATAAAAATTAATTATTTTCCGACAGGA
131 TCAACATGTTCATATTTTAAGTACACTTTAATTATTTTATAAAAATTAATTATTTTCCGACAGGA
* *
67278257 ATTTTACCGAAACTGCATGAATTTAAGTTAAAAATGGCATGAAAAAGTGTGTCAATTTTTGTGTT
196 ATTTTACCGAAACTGCATGAATTTAAGTTAAAAAGGGCATGAAAAAGTGTGTCAATTTTCGTGTT
* *
67278322 TCCACACCCCCAAACTTAATTCATTTCTCGTCCCGAGTAATGCATAAATTTGAAAAGAATTTCTC
261 TCCACACCCCCAAACTTAATTCATTGCTCGTCCCGAGTAATACATAAATTTGAAAAGAATTTCTC
* * * * *
67278387 AGAAACAGCTTTGAAAATTCCTTCAGAATAACATTCTTCCCAGAATTATGAATTTAATATACTTA
326 AGAAACACCTTTGAAGACTCCTTCAGGACAACATTCTTCCCAGAATTATGAATTTAATATACTTA
* *
67278452 TGCTCAAAAACAAAAAATTTGATAGTTATACTACTTAAGTATACATATCATTCAAATTAATCTCA
391 TGCTCAAAAACAAGAAATTTGATAGTTATGCTACTTAAGTATACATATCATTCAAATTAATCTCA
* * * * *
67278517 ACAACTATTATGATAGCAAAATTAAATTAAATGCTTCCTTAACTATGGGATGTTGATTTGAAGTT
456 ACAACTATTATGATAGCAAAATTAGACTAAATGCTTCCTTAACAACGGGATGTTGATATGAAGTT
* * * *
67278582 GCTTGAGTACGTCTAGGAACTTCTTGAATTCAATTTCCTGCTTCTGCTTCTAAAGTCTTTGAGGG
521 GATTGAGTACGTCTA-CAACTTCTTGAATTGAATTTCCTACTTCTGCTTCTAAAGTCTTTGAGGG
* * * *
67278647 TAGGGTGGTGGAGGTTTCTTTAATGGAACTGGTTGATTCGTCTTCTGTTGTAATTCTGCGTCTAG
585 TAGGGTGGTGGAGGTTTCTTTAATGGAACTGGTTGATTCGTCTTTTGTGGTAATTCTGCATCTAA
67278712 CGGACGGTCCAAAATTATGAGTATTAATTCATAATATAATTAATTTTAATTTATATCCAATTTAA
650 CGGACGGTCCAAAATTATGAGTATTAATTCATAATATAATTAATTTTAATTTATATCCAATTTAA
**
67278777 TTTGGGTTAATAAATTATTATTAATAAATTATGAAAAGTGGTCC
715 TTTGCATTAATAAATTATTATTAATAAATTATGAAAAGTGGTCC
* * *
67278821 AGTTGATACTTCAAATTGCTTCTCGGTTTTGTGCTTCTAGTAGTGTCTGCCGAGCCATTTTTCAC
1 AGTTGATACTTCAAATTGCTTCTCAGTTTTGTGCTTCTAGCAGTGTCTGCCGAGCCATTTTTCGC
* *
67278886 CCTTTGTGTAAATCTGTCGAAAATAACCAAAATTTATCAAAATTAATTATAAAATTAATTAAAAT
66 CCTTTGTGCAAATCTGTCGAAAATAACCAAAATTCATCAAAATTAATTATAAAATTAATTAAAAT
*
67278951 TCAACATGTTCATATTTTAAGTACACTTTAATTATTTTATAAAAGTTAATTATTTTCCGACAGGA
131 TCAACATGTTCATATTTTAAGTACACTTTAATTATTTTATAAAAATTAATTATTTTCCGACAGGA
* * * *
67279016 ATTTTACCGAAATTGTATGAATTTAAGTTAAAAAGGGCATGAAAAAGTATGTCAATTTTCATGTT
196 ATTTTACCGAAACTGCATGAATTTAAGTTAAAAAGGGCATGAAAAAGTGTGTCAATTTTCGTGTT
* * *
67279081 TCCACACCCCCAAAACTTAATTCATTGCTCGTCCCGAGTAATATATTACTTTGAAAAGAATTTCT
261 TCCACACCCCC-AAACTTAATTCATTGCTCGTCCCGAGTAATACATAAATTTGAAAAGAATTTCT
*
67279146 CAAAAACACCTTTGAAGACTCCTTCAGGACAACATTCTTCCCAGAATTATGAATTTAATATACTT
325 CAGAAACACCTTTGAAGACTCCTTCAGGACAACATTCTTCCCAGAATTATGAATTTAATATACTT
* *
67279211 ATGCTTAAAAACAAGAAATTTGATAGTTATGCTACTTTAGTATACATATCATTCAAATTAATCTC
390 ATGCTCAAAAACAAGAAATTTGATAGTTATGCTACTTAAGTATACATATCATTCAAATTAATCTC
*
67279276 AACAACTATTATGATAGCATAATTAGACTAAATGCTTCCTTAACAACGGGATGTTGATATGAAGT
455 AACAACTATTATGATAGCAAAATTAGACTAAATGCTTCCTTAACAACGGGATGTTGATATGAAGT
* * * * *
67279341 TTATTAAATACGTCTACAACCTTCTTGAATCGAATTTCTTACTTCTGCTTCTAAAGTCTTTGAGG
520 TGATTGAGTACGTCTACAA-CTTCTTGAATTGAATTTCCTACTTCTGCTTCTAAAGTCTTTGAGG
* *
67279406 GTAGGGTGGTGGAGGTTTCTTTAATGGAACTGGTTGATTTGTCTTTTGTGGTAATTTTGCATCTA
584 GTAGGGTGGTGGAGGTTTCTTTAATGGAACTGGTTGATTCGTCTTTTGTGGTAATTCTGCATCTA
*
67279471 ACGGACGGTCCAAAATTATGGGTATTAATTCATAATATAATTAATTTTAATTTATATCCAATTTA
649 ACGGACGGTCCAAAATTATGAGTATTAATTCATAATATAATTAATTTTAATTTATATCCAATTTA
* *
67279536 ATTTGCACTAATAAATTATTAATAATAAATTATGAAAAGTGGTCC
714 ATTTGCATTAATAAATTATTATTAATAAATTATGAAAAGTGGTCC
* *
67279581 AGTTGATACTTCAAATTGCTTCTCAGTTTTGTGCTTCTAGC-GATGTCTACCGAGCTATTTTTCG
1 AGTTGATACTTCAAATTGCTTCTCAGTTTTGTGCTTCTAGCAG-TGTCTGCCGAGCCATTTTTCG
67279645 CCCTTTGTGCAAATCTGTCGAAAATAACCAAAATTCATCAAAATTAA-TATTAAAATTAATTAAA
65 CCCTTTGTGCAAATCTGTCGAAAATAACCAAAATTCATCAAAATTAATTA-TAAAATTAATTAAA
* *
67279709 ATTCAACATGTTCATATTTTAAGTACACTTTAATTATTTTATAAAAATTGATTATTTTTCGACAG
129 ATTCAACATGTTCATATTTTAAGTACACTTTAATTATTTTATAAAAATTAATTATTTTCCGACAG
* * *
67279774 GAATTTTACCGAAACTGTATGAATTTAAGTTAAAAAAGGCATGAAAAATTGTGTCAATTTTCGTG
194 GAATTTTACCGAAACTGCATGAATTTAAGTTAAAAAGGGCATGAAAAAGTGTGTCAATTTTCGTG
*
67279839 TTTCCACACCCCCAAACTTAATTCATTGTTCGTCCCGAGTAATACATAAATTTGAAAAGAATTTC
259 TTTCCACACCCCCAAACTTAATTCATTGCTCGTCCCGAGTAATACATAAATTTGAAAAGAATTTC
67279904 TCAGAAACACCTTTGAAGACTCCTTCAGGACAACATTCTTCCCAGAATTATGAATTTAATATACT
324 TCAGAAACACCTTTGAAGACTCCTTCAGGACAACATTCTTCCCAGAATTATGAATTTAATATACT
* *
67279969 TATACTAAAAAACAAGAAATTTGATAGTTATGCTACTTAAGTATACATATCATTCAAATTAATCT
389 TATGCTCAAAAACAAGAAATTTGATAGTTATGCTACTTAAGTATACATATCATTCAAATTAATCT
* * *
67280034 CAACAACTATTATGATAGCAAAATTAGACTAAATGCTTCCTTAACAATGAGATGTTGATTTGAAG
454 CAACAACTATTATGATAGCAAAATTAGACTAAATGCTTCCTTAACAACGGGATGTTGATATGAAG
* *
67280099 TTGCTTGAGTACGTCTACAAACTTCTTGAATTGAATTTCCTACTTCTGCTTCTAAAGTCTTTGAT
519 TTGATTGAGTACGTCTAC-AACTTCTTGAATTGAATTTCCTACTTCTGCTTCTAAAGTCTTTGAG
67280164 GGTAGGGTGGTGGAGGTTTCTTTAATGGAACTGGTTGATTCGTCTTTTGTGGTAATTCTGCATCT
583 GGTAGGGTGGTGGAGGTTTCTTTAATGGAACTGGTTGATTCGTCTTTTGTGGTAATTCTGCATCT
67280229 AACGGACGGTCCAAAATTATGAGTATTAATTCATAATATAATTAATTTTAATTTATATCCAATTT
648 AACGGACGGTCCAAAATTATGAGTATTAATTCATAATATAATTAATTTTAATTTATATCCAATTT
*
67280294 AATTTGCGTTAATAAATTATTATTAATAAATTATGAAAAGTGGTCC
713 AATTTGCATTAATAAATTATTATTAATAAATTATGAAAAGTGGTCC
*
67280340 AGTTGATGCTTCAAATTGCTTCTC-GCTTTTGTGCTTCTAGCAGTGTCTGCCGAGCCATTTTTCG
1 AGTTGATACTTCAAATTGCTTCTCAG-TTTTGTGCTTCTAGCAGTGTCTGCCGAGCCATTTTTCG
* * *
67280404 CCCTTTGTCCAAATCTGTCAAAAATAACCAAAATTCATCAAAATTAATTTTAAAATTAATTAAAA
65 CCCTTTGTGCAAATCTGTCGAAAATAACCAAAATTCATCAAAATTAATTATAAAATTAATTAAAA
* *
67280469 TTCAACATGTTCATATTTTAAGTACACTTTAGTTATTTTATAAAAATTAATTATTTTTCGACAGG
130 TTCAACATGTTCATATTTTAAGTACACTTTAATTATTTTATAAAAATTAATTATTTTCCGACAGG
* * *
67280534 AATTTTATCGAAACTGCATGAATTTAAGTTAAAAGGGGCATGAAAAAGTGTGTCAATTTTCGCGT
195 AATTTTACCGAAACTGCATGAATTTAAGTTAAAAAGGGCATGAAAAAGTGTGTCAATTTTCGTGT
67280599 TTCCACACCCCCAAAC
260 TTCCACACCCCCAAAC
67280615 CATGAAGGCT
Statistics
Matches: 3059, Mismatches: 186, Indels: 81
0.92 0.06 0.02
Matches are distributed among these distances:
732 98 0.03
733 328 0.11
734 269 0.09
757 2 0.00
758 587 0.19
759 925 0.30
760 850 0.28
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.37
Consensus pattern (758 bp):
AGTTGATACTTCAAATTGCTTCTCAGTTTTGTGCTTCTAGCAGTGTCTGCCGAGCCATTTTTCGC
CCTTTGTGCAAATCTGTCGAAAATAACCAAAATTCATCAAAATTAATTATAAAATTAATTAAAAT
TCAACATGTTCATATTTTAAGTACACTTTAATTATTTTATAAAAATTAATTATTTTCCGACAGGA
ATTTTACCGAAACTGCATGAATTTAAGTTAAAAAGGGCATGAAAAAGTGTGTCAATTTTCGTGTT
TCCACACCCCCAAACTTAATTCATTGCTCGTCCCGAGTAATACATAAATTTGAAAAGAATTTCTC
AGAAACACCTTTGAAGACTCCTTCAGGACAACATTCTTCCCAGAATTATGAATTTAATATACTTA
TGCTCAAAAACAAGAAATTTGATAGTTATGCTACTTAAGTATACATATCATTCAAATTAATCTCA
ACAACTATTATGATAGCAAAATTAGACTAAATGCTTCCTTAACAACGGGATGTTGATATGAAGTT
GATTGAGTACGTCTACAACTTCTTGAATTGAATTTCCTACTTCTGCTTCTAAAGTCTTTGAGGGT
AGGGTGGTGGAGGTTTCTTTAATGGAACTGGTTGATTCGTCTTTTGTGGTAATTCTGCATCTAAC
GGACGGTCCAAAATTATGAGTATTAATTCATAATATAATTAATTTTAATTTATATCCAATTTAAT
TTGCATTAATAAATTATTATTAATAAATTATGAAAAGTGGTCC
Found at i:67283907 original size:759 final size:759
Alignment explanation
Indices: 67282449--67284043 Score: 2726
Period size: 759 Copynumber: 2.1 Consensus size: 759
67282439 GGGTGTTACA
* * *
67282449 AATCTCAACAACTATTATGATAGCAAAATTAAATTAAATGCTTCCTTAACTATGGGATGTTGATT
1 AATCTCAACAACTATTATGATAGCAAAATTAGACTAAATGCTTCCTTAACAATGGGATGTTGATT
** * * * *
67282514 TGAAGTTGCTTGAGTACGTCTAGGAACTTTTTTAATTCAATTTCCTGCTTCTACTTCTGAAGTCT
66 TGAAGTTGCTTGAGTACGTCTACAAACTTCTTGAATTCAATTTCCTACTTCTACTTCTAAAGTCT
*
67282579 TTGAGGGTAGGGTGGTGGAGGTTTCTTTAATGGAACTGGTTGATTCGTCTTCTGTTGTAATTCTG
131 TTGAGGGTAGGGTGGTGGAGGTTTCTTTAATGGAACTGGTTGATTCGTCTTCTGTGGTAATTCTG
* * *
67282644 CGTCTAACGGACTGTCCAAAATTATGAGTATTAATTCATAATATAATTAATTTTAATTTATATCC
196 CATCTAACAGACGGTCCAAAATTATGAGTATTAATTCATAATATAATTAATTTTAATTTATATCC
*
67282709 AATTTAATTTGGGTTAATAAATTATTATTAATAAATTATGAAAAGTGGTCCAGTTGATACTTCAA
261 AATTTAATTTGCGTTAATAAATTATTATTAATAAATTATGAAAAGTGGTCCAGTTGATACTTCAA
* *
67282774 ATTGCTTCTTGGTTTTGTGCTTCTAGTAGTGTCTGCCGAGCCATTTTTCACCCTTTATGCAAATC
326 ATTGCTTCTTGGTTTTATGCTTCTAGCAGTGTCTGCCGAGCCATTTTTCACCCTTTATGCAAATC
*
67282839 TATCGAAAATAACCAAAATTTATCAAAATTAATTATAAAATTAATTAAAATTCAACATGTTCATA
391 TATCGAAAATAACCAAAATTCATCAAAATTAATTATAAAATTAATTAAAATTCAACATGTTCATA
*
67282904 TTTTAAGTACACTTTAATTATTTTATAAAAATTGATTATTTTTCGACAGGAATTTTACCGAAACT
456 TTTTAAGTACACTTTAATTATTTTATAAAAATTAATTATTTTTCGACAGGAATTTTACCGAAACT
*
67282969 GTATGAATTTAAGTTAAAAAAGGCATGAAAAAGTGTGTCAATTTTCGTGTTTCCACACCCCCAAA
521 GCATGAATTTAAGTTAAAAAAGGCATGAAAAAGTGTGTCAATTTTCGTGTTTCCACACCCCCAAA
* *
67283034 CTTAATTCATTGTTCGTCCCGAGTAATACATAAATTTGAAAAGAATTTCTCAGAAACACCTTTGA
586 ATTAATTCATTGTTCGTCCCAAGTAATACATAAATTTGAAAAGAATTTCTCAGAAACACCTTTGA
*
67283099 AGACTCCTTCAGGACAACATTCTTCCCAGAATTATGAATTTAATATACTTATAC-CAAAAAACAA
651 AGACTCCTTCAGAACAACATTCTTCCCAGAATTATGAATTTAATATACTTATACTC-AAAAACAA
* * *
67283163 GAAATTTGATAGTTATGCTACTTAAGTATACATCTCATTCAAATT
715 GAAACTTGATAGTTATGCTACTTAAGTATACATATCATTAAAATT
*
67283208 AATCTCAACAACTATTATGATAGCAAAATTAGACTAAATGCTTCCTTAACAATGAGATGTTGATT
1 AATCTCAACAACTATTATGATAGCAAAATTAGACTAAATGCTTCCTTAACAATGGGATGTTGATT
* *
67283273 TGAAGTTGCTTGAGTACGTCTACAAACTTCTTGAATTGAATTTCCTACTTCTGCTTCTAAAGTCT
66 TGAAGTTGCTTGAGTACGTCTACAAACTTCTTGAATTCAATTTCCTACTTCTACTTCTAAAGTCT
* *
67283338 TTGATGGTAGGGTGGTGGAGGTTTCTTTAATGGAACTGGTTGATTCGTCTTTTGTGGTAATTCTG
131 TTGAGGGTAGGGTGGTGGAGGTTTCTTTAATGGAACTGGTTGATTCGTCTTCTGTGGTAATTCTG
*
67283403 CATCTAACAGACGGTCCAAAATTATGTGTATTAATTCATAATATAATTAATTTTAATTTATATCC
196 CATCTAACAGACGGTCCAAAATTATGAGTATTAATTCATAATATAATTAATTTTAATTTATATCC
*
67283468 AATTTAATTTGCGTTAATAAATTATTATTAATAAATTATGAAAAGTGGTCCAGTTGATGCTTCAA
261 AATTTAATTTGCGTTAATAAATTATTATTAATAAATTATGAAAAGTGGTCCAGTTGATACTTCAA
* * *
67283533 ATTGCTTCTTGGTTTTATGCTTCTAGCAGTGTCTGCCGAGCCATTTTTCGCCTTTTGTGCAAATC
326 ATTGCTTCTTGGTTTTATGCTTCTAGCAGTGTCTGCCGAGCCATTTTTCACCCTTTATGCAAATC
* *
67283598 TGTCGAAAATAACCAAAATTCATCAAAATTAATTTTAAAATTAATTAAAATTCAACATGTTCATA
391 TATCGAAAATAACCAAAATTCATCAAAATTAATTATAAAATTAATTAAAATTCAACATGTTCATA
* *
67283663 TTTTAAGTACACTTTAGTTATTTTATAAAAATTAATTATTTTTCGACAGGAATTTTATCGAAACT
456 TTTTAAGTACACTTTAATTATTTTATAAAAATTAATTATTTTTCGACAGGAATTTTACCGAAACT
* *
67283728 GCATGAATTTAAGTTAAAAAGGGCATGAAAAAGTGTGTCAATTTTCGTGTTTCCACACCCTCAAA
521 GCATGAATTTAAGTTAAAAAAGGCATGAAAAAGTGTGTCAATTTTCGTGTTTCCACACCCCCAAA
* * * * *
67283793 ATTAATTCATTTTTTGTCCCAAGTAATGCATAAATTTGAAAATAATTTCTC-GAAAACACTTTTG
586 ATTAATTCATTGTTCGTCCCAAGTAATACATAAATTTGAAAAGAATTTCTCAG-AAACACCTTTG
*
67283857 AAGACTCCTTCAGAACAACATTCTTCCCAGAATTATGAATTTAATATACTTATGCTCAAAAACAA
650 AAGACTCCTTCAGAACAACATTCTTCCCAGAATTATGAATTTAATATACTTATACTCAAAAACAA
67283922 GAAACTTGATAGTTATGCTACTTAAGTATACATATCATTAAAATT
715 GAAACTTGATAGTTATGCTACTTAAGTATACATATCATTAAAATT
*
67283967 AATCTCAACAACTATTATGATAGCAAAATTAGACTAAATGCTTCCTTAACAATGGGATGTTGATA
1 AATCTCAACAACTATTATGATAGCAAAATTAGACTAAATGCTTCCTTAACAATGGGATGTTGATT
67284032 TGAAGTTGCTTG
66 TGAAGTTGCTTG
67284044 TGTAACAGCC
Statistics
Matches: 785, Mismatches: 49, Indels: 4
0.94 0.06 0.00
Matches are distributed among these distances:
758 1 0.00
759 783 1.00
760 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.38
Consensus pattern (759 bp):
AATCTCAACAACTATTATGATAGCAAAATTAGACTAAATGCTTCCTTAACAATGGGATGTTGATT
TGAAGTTGCTTGAGTACGTCTACAAACTTCTTGAATTCAATTTCCTACTTCTACTTCTAAAGTCT
TTGAGGGTAGGGTGGTGGAGGTTTCTTTAATGGAACTGGTTGATTCGTCTTCTGTGGTAATTCTG
CATCTAACAGACGGTCCAAAATTATGAGTATTAATTCATAATATAATTAATTTTAATTTATATCC
AATTTAATTTGCGTTAATAAATTATTATTAATAAATTATGAAAAGTGGTCCAGTTGATACTTCAA
ATTGCTTCTTGGTTTTATGCTTCTAGCAGTGTCTGCCGAGCCATTTTTCACCCTTTATGCAAATC
TATCGAAAATAACCAAAATTCATCAAAATTAATTATAAAATTAATTAAAATTCAACATGTTCATA
TTTTAAGTACACTTTAATTATTTTATAAAAATTAATTATTTTTCGACAGGAATTTTACCGAAACT
GCATGAATTTAAGTTAAAAAAGGCATGAAAAAGTGTGTCAATTTTCGTGTTTCCACACCCCCAAA
ATTAATTCATTGTTCGTCCCAAGTAATACATAAATTTGAAAAGAATTTCTCAGAAACACCTTTGA
AGACTCCTTCAGAACAACATTCTTCCCAGAATTATGAATTTAATATACTTATACTCAAAAACAAG
AAACTTGATAGTTATGCTACTTAAGTATACATATCATTAAAATT
Found at i:67285256 original size:40 final size:40
Alignment explanation
Indices: 67285190--67285266 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
67285180 ACTATGTTTG
** *
67285190 GCACTTAGTGTGCATTTTGAGATAGCTTTGGCTATATAAA
1 GCACTTAGTGTGCATTCGGAGATAGCTTCGGCTATATAAA
*
67285230 GCACTTAGTGTTCGATTCGGAG-TAGCTTCGGCTATAT
1 GCACTTAGTGTGC-ATTCGGAGATAGCTTCGGCTATAT
67285267 GTGGCACTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 26 0.81
41 6 0.19
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (40 bp):
GCACTTAGTGTGCATTCGGAGATAGCTTCGGCTATATAAA
Found at i:67285274 original size:40 final size:40
Alignment explanation
Indices: 67285188--67285281 Score: 100
Period size: 40 Copynumber: 2.4 Consensus size: 40
67285178 CGACTATGTT
** *
67285188 TGGCACTTAGTGTGCATTTTGAGATAGCTTTGGCTATATA
1 TGGCACTTAGTGTGCATTCGGAGATAGCTTCGGCTATATA
** * *
67285228 AAGCACTTAGTGTTCGATTCGGAG-TAGCTTCGGCTATATG
1 TGGCACTTAGTGTGC-ATTCGGAGATAGCTTCGGCTATATA
*
67285268 TGGCACTTAATGTG
1 TGGCACTTAGTGTG
67285282 TGAGACTAAG
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
40 36 0.86
41 6 0.14
ACGTcount: A:0.22, C:0.15, G:0.27, T:0.36
Consensus pattern (40 bp):
TGGCACTTAGTGTGCATTCGGAGATAGCTTCGGCTATATA
Found at i:67296161 original size:40 final size:40
Alignment explanation
Indices: 67296115--67296297 Score: 171
Period size: 40 Copynumber: 4.6 Consensus size: 40
67296105 CGACTCGCTA
* *
67296115 AATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACG
1 AATGCCTTCGGGACTAAGCCCGGATT-TAGTAACTCGCACG
* *
67296155 AATGCCTTCGGGACTTAA-CCCGGATTTAGTAACTTGCACA
1 AATGCCTTCGGGAC-TAAGCCCGGATTTAGTAACTCGCACG
* *
67296195 AATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACG
1 AATGCCTTCGGGACTAAGCCCGGATTTAGTAACTCGCACG
* * * *
67296234 AATGCCTTC-GGATCCT-AGTCCGGATATAGTCACTTAGCAC-
1 AATGCCTTCGGGA--CTAAGCCCGGATTTAGTAAC-TCGCACG
* *
67296274 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTAAGCCCGGA
67296298 CATCATTCGA
Statistics
Matches: 119, Mismatches: 15, Indels: 18
0.78 0.10 0.12
Matches are distributed among these distances:
38 4 0.03
39 31 0.26
40 70 0.59
41 14 0.12
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTAAGCCCGGATTTAGTAACTCGCACG
Found at i:67296216 original size:79 final size:81
Alignment explanation
Indices: 67296114--67296297 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 81
67296104 ACGACTCGCT
** * *
67296114 AAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 AAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCCG
*
67296177 GATTTAGTAACTT-GCAC
64 GATATAGTAACTTAGCAC
* **
67296194 AAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGA
*
67296258 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
67296274 AAA-GCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGA
67296298 CATCATTCGA
Statistics
Matches: 91, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 33 0.36
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (81 bp):
AAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGA
TATAGTAACTTAGCAC
Found at i:67299368 original size:29 final size:29
Alignment explanation
Indices: 67299335--67299465 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
67299325 TGACGAGATC
*
67299335 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
67299364 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
67299393 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
67299422 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
67299451 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
67299466 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:67302974 original size:2 final size:2
Alignment explanation
Indices: 67302967--67302999 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
67302957 AATCTATTGG
67302967 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
67303000 AGTAAATTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:67303280 original size:2 final size:2
Alignment explanation
Indices: 67303273--67303304 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
67303263 ATTTGACTTG
*
67303273 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67303305 GTACATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:67305209 original size:28 final size:28
Alignment explanation
Indices: 67305144--67305242 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
67305134 TCATGAATTG
* * *
67305144 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
67305173 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
67305201 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
67305229 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
67305243 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:67308667 original size:21 final size:22
Alignment explanation
Indices: 67308637--67308683 Score: 87
Period size: 21 Copynumber: 2.2 Consensus size: 22
67308627 TGATTTTAAG
67308637 GAGATTAATTCTACTTTATCTT
1 GAGATTAATTCTACTTTATCTT
67308659 GAGA-TAATTCTACTTTATCTT
1 GAGATTAATTCTACTTTATCTT
67308680 GAGA
1 GAGA
67308684 CAATATTAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.45
Consensus pattern (22 bp):
GAGATTAATTCTACTTTATCTT
Found at i:67309564 original size:23 final size:23
Alignment explanation
Indices: 67309538--67309586 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
67309528 GCTTACATCC
67309538 TTTTATATCTCATACCCCTACCT
1 TTTTATATCTCATACCCCTACCT
67309561 TTTTATATCTCATACCCCTACCT
1 TTTTATATCTCATACCCCTACCT
67309584 TTT
1 TTT
67309587 AACAATACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.20, C:0.33, G:0.00, T:0.47
Consensus pattern (23 bp):
TTTTATATCTCATACCCCTACCT
Found at i:67312442 original size:19 final size:19
Alignment explanation
Indices: 67312414--67312461 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
67312404 GTATATATTT
67312414 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
67312432 TAAATTTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
67312451 TAAGTTTTATT
1 TAAATTTTATT
67312462 CATATTCTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
18 4 0.14
19 24 0.86
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:67312537 original size:42 final size:42
Alignment explanation
Indices: 67312478--67312566 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
67312468 CTAGGAATAT
* * *
67312478 TTTTATTTTATCTTTTAGTAGTTTATTAGGACAAGGGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAACAAGGGAACTA
*
67312520 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAACAAGGGAACTA
67312562 TTTTC
1 TTTTC
67312567 CCAATTAGGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.28, C:0.07, G:0.15, T:0.51
Consensus pattern (42 bp):
TTTTCTTTTATATTTTAGTAGTTTATTAGAACAAGGGAACTA
Found at i:67316357 original size:19 final size:19
Alignment explanation
Indices: 67316311--67316358 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
67316301 GTATATATTT
67316311 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
67316329 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
67316348 TAAGTTTTATT
1 TAAATTTTATT
67316359 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:67316439 original size:42 final size:42
Alignment explanation
Indices: 67316375--67316461 Score: 129
Period size: 42 Copynumber: 2.1 Consensus size: 42
67316365 CTAGGAATAT
* * *
67316375 TTTTATTTTATCTTTTAGTAGTTTATTAGGACAAGGGAACTA
1 TTTTATTTTATATTTTAATAGTTTATTAGAACAAGGGAACTA
* *
67316417 TTTTCTTTTATATTTTAATAGTTTATTAGAATAAGGGAACTA
1 TTTTATTTTATATTTTAATAGTTTATTAGAACAAGGGAACTA
67316459 TTT
1 TTT
67316462 ACCCAATTAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.30, C:0.06, G:0.14, T:0.51
Consensus pattern (42 bp):
TTTTATTTTATATTTTAATAGTTTATTAGAACAAGGGAACTA
Found at i:67320051 original size:44 final size:44
Alignment explanation
Indices: 67319998--67320087 Score: 162
Period size: 44 Copynumber: 2.0 Consensus size: 44
67319988 AATATGCATT
*
67319998 AATTGCTTCCTTCTATCGTTAGCTTAGCAAGTAAAAATATTATA
1 AATTGCTTCCTTCTATCGTTAGCTTAGCAAGCAAAAATATTATA
*
67320042 AATTGCTTCCTTCTATCGTTAGCTTAGCAAGCAACAATATTATA
1 AATTGCTTCCTTCTATCGTTAGCTTAGCAAGCAAAAATATTATA
67320086 AA
1 AA
67320088 ATGAAAAATT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (44 bp):
AATTGCTTCCTTCTATCGTTAGCTTAGCAAGCAAAAATATTATA
Found at i:67328963 original size:50 final size:50
Alignment explanation
Indices: 67328883--67329079 Score: 198
Period size: 50 Copynumber: 3.9 Consensus size: 50
67328873 AACTTGTATT
* * * * *
67328883 TATTCGGCCACATAGGTATGTACATCTGTGATGTTATATTGGATTTTGAA
1 TATTCGGCCATATAGGTATGCACATATGTGATATTATATTTGATTTTGAA
* * *
67328933 TATTCGGCCATGA-AGGTATGCACAAATGTGATATTATATTTGAATTTGTA
1 TATTCGGCCAT-ATAGGTATGCACATATGTGATATTATATTTGATTTTGAA
* * * * * * * * *
67328983 TATTCGACCATATAAGTAAGTACATATTTGATGTTAAATTTGATCTTGCA
1 TATTCGGCCATATAGGTATGCACATATGTGATATTATATTTGATTTTGAA
* * *
67329033 TATTCAGCCATATAGGTATGCATATATGTGATATTATATTTAATTTT
1 TATTCGGCCATATAGGTATGCACATATGTGATATTATATTTGATTTT
67329080 CTATAATCGA
Statistics
Matches: 115, Mismatches: 30, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
49 1 0.01
50 113 0.98
51 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41
Consensus pattern (50 bp):
TATTCGGCCATATAGGTATGCACATATGTGATATTATATTTGATTTTGAA
Found at i:67329062 original size:100 final size:100
Alignment explanation
Indices: 67328883--67329092 Score: 253
Period size: 100 Copynumber: 2.1 Consensus size: 100
67328873 AACTTGTATT
* * * * * * *
67328883 TATTCGGCCACATAGGTATGTACATCTGTGATGTTATATTGGATTTTGAATATTCGGCCATGAAG
1 TATTCGACCACATAAGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCAGCCATGAAG
*
67328948 GTATGCACAAATGTGATATTATATTTGAA-TTTGTA
66 GTATGCACAAATGTGATATTATATTT-AATTTTCTA
* * * *
67328983 TATTCGACCATATAAGTAAGTACATATTTGATGTTAAATTTGATCTTGCATATTCAGCCAT-ATA
1 TATTCGACCACATAAGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCAGCCATGA-A
* *
67329047 GGTATGCATATATGTGATATTATATTTAATTTTCTA
65 GGTATGCACAAATGTGATATTATATTTAATTTTCTA
*
67329083 TAATCGACCA
1 TATTCGACCA
67329093 AATGAGTGAT
Statistics
Matches: 93, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
99 3 0.03
100 90 0.97
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (100 bp):
TATTCGACCACATAAGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCAGCCATGAAG
GTATGCACAAATGTGATATTATATTTAATTTTCTA
Found at i:67331054 original size:66 final size:68
Alignment explanation
Indices: 67330979--67331165 Score: 263
Period size: 71 Copynumber: 2.7 Consensus size: 68
67330969 TAGTACCACT
*
67330979 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGACTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGACTACATGGTGTCCTTCACTTGGAAT
67331041 CACG
65 CACG
*
67331045 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGACTACATGGTGTCCTTCACTTGGA
67331110 ATCACG
63 ATCACG
*
67331116 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGACTACATGG
67331166 GATACATCTC
Statistics
Matches: 113, Mismatches: 2, Indels: 7
0.93 0.02 0.06
Matches are distributed among these distances:
66 13 0.12
67 6 0.05
68 1 0.01
69 1 0.01
71 92 0.81
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGACTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:67331091 original size:71 final size:71
Alignment explanation
Indices: 67331002--67331165 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
67330992 CGATTTGTCT
*
67331002 CGTAGCTCTCTTGACTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
67331067 CTTTCA
66 CTTTCA
67331073 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
67331138 CTTTCA
66 CTTTCA
67331144 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
67331166 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:67331203 original size:71 final size:70
Alignment explanation
Indices: 67331002--67331199 Score: 267
Period size: 71 Copynumber: 2.8 Consensus size: 70
67330992 CGATTTGTCT
* * * *
67331002 CGTAGCTCTCTTGACTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
67331067 CTTTCA
65 CTTTCA
* * *
67331073 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
67331138 CTTTCA
65 CTTTCA
* *
67331144 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
67331200 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 95 0.79
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:67338155 original size:66 final size:68
Alignment explanation
Indices: 67338079--67338265 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
67338069 TAGTACCACT
*
67338079 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
67338141 CACG
65 CACG
67338145 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
67338210 ATCACG
63 ATCACG
67338216 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
67338266 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:67338190 original size:71 final size:71
Alignment explanation
Indices: 67338102--67338265 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67338092 CGATTTGTCT
67338102 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
67338167 CTTTCA
66 CTTTCA
67338173 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
67338238 CTTTCA
66 CTTTCA
67338244 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
67338266 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:67338303 original size:71 final size:70
Alignment explanation
Indices: 67338102--67338299 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
67338092 CGATTTGTCT
* * *
67338102 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
67338167 CTTTCA
65 CTTTCA
* * *
67338173 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
67338238 CTTTCA
65 CTTTCA
* *
67338244 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
67338300 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:67339427 original size:2 final size:2
Alignment explanation
Indices: 67339385--67339419 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
67339375 AGATGTTGAT
67339385 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
67339420 GCATATATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:67341692 original size:2 final size:2
Alignment explanation
Indices: 67341685--67341712 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
67341675 ATTCTTCTTA
67341685 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67341713 TTGATATAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67347683 original size:48 final size:49
Alignment explanation
Indices: 67347481--67347799 Score: 196
Period size: 46 Copynumber: 6.7 Consensus size: 49
67347471 CATTTGTGCT
67347481 CTAGTGTAAGACCATGTCTGGGACATGGCATCAG--C-AT-TGAGACGATAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGATATGAGA-G--AG
* * * * *
67347529 TTAGTGTAAGA-GATGTCTGGGAAAT-GCATCGGC-C--TA-GCGATGTAAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGATATGAGA-G--AG
* * * *
67347575 CTAGTGTAAGA-CATGTCTGGGACAT-GCACCGGCTACG--A-GA-TGTG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCAGC-ACGATATGAGAGAG
* *
67347619 TTAGTGTAAGACCATGTCTGGGACATGGCATTAGCACG-TAT-AGAG-G
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGATATGAGAGAG
* * * *
67347665 TTTCAGTGTAAGACCATGTTTGGGACATGGCATCGGCACGAATATGTGAGAG
1 -CT-AGTGTAAGACCATGTCTGGGACATGGCATCAGCACG-ATATGAGAGAG
* **
67347717 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTG--ATG-GATGAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGATATGAGA-GAG
* * *
67347764 CCAGTGGATGACCATGTCTGGGACATGGCATCAGCA
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
67347800 TTACACCCTA
Statistics
Matches: 221, Mismatches: 33, Indels: 35
0.76 0.11 0.12
Matches are distributed among these distances:
44 11 0.05
45 17 0.08
46 53 0.24
47 53 0.24
48 46 0.21
50 36 0.16
51 4 0.02
52 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (49 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGATATGAGAGAG
Found at i:67347789 original size:47 final size:48
Alignment explanation
Indices: 67347621--67347795 Score: 160
Period size: 47 Copynumber: 3.6 Consensus size: 48
67347611 GAGATGTGTT
* ** * * *
67347621 AGTGTAAGACCATGTCTGGGACATGGCATTAGCACGTAT-AGAG-GTTTC
1 AGTGGAAGACCATGTCTGGGACATGGCATCGGCACGAATGTGAGAG--CC
* * *
67347669 AGTGTAAGACCATGTTTGGGACATGGCATCGGCACGAATATGTGAGAGCT
1 AGTGGAAGACCATGTCTGGGACATGGCATCGGCACG-A-ATGTGAGAGCC
* **
67347719 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTG-ATG-GATGAGCC
1 AGTGGAAGACCATGTCTGGGACATGGCATCGGCACGAATGTGA-GAGCC
*
67347766 AGTGGATGACCATGTCTGGGACATGGCATC
1 AGTGGAAGACCATGTCTGGGACATGGCATC
67347796 AGCATTACAC
Statistics
Matches: 109, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
46 2 0.02
47 35 0.32
48 33 0.30
50 35 0.32
51 3 0.03
52 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.25
Consensus pattern (48 bp):
AGTGGAAGACCATGTCTGGGACATGGCATCGGCACGAATGTGAGAGCC
Found at i:67348814 original size:40 final size:40
Alignment explanation
Indices: 67348669--67348796 Score: 220
Period size: 40 Copynumber: 3.2 Consensus size: 40
67348659 AGTTTTTGTT
* *
67348669 AGACACGGGCTAGGACACGGGAGTGTCATAGCCGTGTGAG
1 AGACACGGGCTAGGACACGGGTGTGTCATGGCCGTGTGAG
* *
67348709 AGACACGGGCTAGGACACGGGTGTGTCATGGCTGTCTGAG
1 AGACACGGGCTAGGACACGGGTGTGTCATGGCCGTGTGAG
67348749 AGACACGGGCTAGGACACGGGTGTGTCATGGCCGTGTGAG
1 AGACACGGGCTAGGACACGGGTGTGTCATGGCCGTGTGAG
67348789 AGACACGG
1 AGACACGG
67348797 ACGTGTGTCA
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.23, C:0.20, G:0.41, T:0.16
Consensus pattern (40 bp):
AGACACGGGCTAGGACACGGGTGTGTCATGGCCGTGTGAG
Found at i:67357551 original size:20 final size:21
Alignment explanation
Indices: 67357526--67357569 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
67357516 CTAGATGCTT
67357526 CAGGTA-CTTCAGGTATATTG
1 CAGGTACCTTCAGGTATATTG
*
67357546 CAGGTACCTTCAGGTTTATTG
1 CAGGTACCTTCAGGTATATTG
67357567 CAG
1 CAG
67357570 CCTGTGCTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (21 bp):
CAGGTACCTTCAGGTATATTG
Found at i:67367114 original size:50 final size:49
Alignment explanation
Indices: 67366999--67367178 Score: 190
Period size: 49 Copynumber: 3.7 Consensus size: 49
67366989 CGAGATGTGT
* * * * *
67366999 TAGTGTAAGACCATGTCTGGCACATGGCATTGGCATG-TATAG-AAGTGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATAT-GTGAGAGC
*
67367047 TAG-GATAAAACCATGTCTGGGACATGGCATCGGCACGAATATGTGAGAGC
1 TAGTG-TAAGACCATGTCTGGGACATGGCATCGGCACG-ATATGTGAGAGC
* * * *
67367097 TAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGAT-T-TCGATAGT
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGATATGT-GAGAGC
67367146 TAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGG
67367179 TATTACACCC
Statistics
Matches: 113, Mismatches: 12, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
47 1 0.01
48 32 0.28
49 38 0.34
50 38 0.34
51 4 0.04
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (49 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATATGTGAGAGC
Found at i:67367169 original size:49 final size:47
Alignment explanation
Indices: 67366956--67367178 Score: 174
Period size: 49 Copynumber: 4.7 Consensus size: 47
67366946 GATGTAAGCC
* * ** *
67366956 AGTGTAAGA-CATGTCTTGGACAT-GCATCAG-CTACGAGATG-TGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGATTTGAAGTT
* * * *
67367000 AGTGTAAGACCATGTCTGGCACATGGCATTGGCAT-G-TATAGAAGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAT-TTGAAGT--T
* * *
67367048 AG-GATAAAACCATGTCTGGGACATGGCATCGG-CACGAATATGTGAGAGCT
1 AGTG-TAAGACCATGTCTGGGACATGGCATCGGCCTCG-AT-T-TGA-AGTT
*
67367098 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCGATAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTT-GA-AGTT
67367147 AGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
67367179 TATTACACCC
Statistics
Matches: 141, Mismatches: 22, Indels: 27
0.74 0.12 0.14
Matches are distributed among these distances:
44 9 0.06
45 14 0.10
46 7 0.05
47 2 0.01
48 30 0.21
49 37 0.26
50 34 0.24
51 6 0.04
52 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTGAAGTT
Found at i:67371302 original size:46 final size:46
Alignment explanation
Indices: 67371235--67371409 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
67371225 TGTAACCCGC
67371235 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
67371281 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GG-ATAC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGC-A--T
* ** * * **
67371327 ACATCTGCCGAACTCAGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAG-CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
67371374 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
67371410 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 64 0.61
47 29 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:67371350 original size:93 final size:93
Alignment explanation
Indices: 67371242--67371411 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
67371232 CGCCCATAAG
* **
67371242 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67371307 ACGAGCTCGGATACCTAGTTACATCTGC
66 ACGAGCTCGGATACCTAGTTACATCTGC
*
67371335 CGAACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
67371400 ACGAGTTCGGAT
66 ACGAGCTCGGAT
67371412 GCCCAAATAT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATACCTAGTTACATCTGC
Found at i:67373821 original size:15 final size:15
Alignment explanation
Indices: 67373799--67373875 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
67373789 AAGAAAACGA
67373799 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
67373814 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
67373828 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
67373842 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
67373858 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
67373873 ATA
1 ATA
67373876 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:67373830 original size:29 final size:30
Alignment explanation
Indices: 67373796--67373875 Score: 92
Period size: 29 Copynumber: 2.7 Consensus size: 30
67373786 AACAAGAAAA
*
67373796 CGAATAAAGAAATCCAAGATAGAGA-AACC
1 CGAATAAAGAAATCCAAGATAAAGAGAACC
*
67373825 CGAATAAAGAAATCC-AGAATAAAGAGATCC
1 CGAATAAAGAAATCCAAG-ATAAAGAGAACC
* * *
67373855 AGGATAAAGAAACCCAAGATA
1 CGAATAAAGAAATCCAAGATA
67373876 CGATACTATG
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
28 2 0.05
29 21 0.49
30 18 0.42
31 2 0.05
ACGTcount: A:0.55, C:0.16, G:0.17, T:0.11
Consensus pattern (30 bp):
CGAATAAAGAAATCCAAGATAAAGAGAACC
Found at i:67376871 original size:46 final size:46
Alignment explanation
Indices: 67376804--67376978 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
67376794 TGTAACCCGC
* *
67376804 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
67376850 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGC-A--T
* *** * **
67376896 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
67376943 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
67376979 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 64 0.60
47 30 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:67376917 original size:93 final size:93
Alignment explanation
Indices: 67376811--67376983 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
67376801 CGCCCATAAG
**
67376811 CGAACTCGAACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67376876 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* *
67376904 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
67376969 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
67376984 CAAATATCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:67389837 original size:40 final size:40
Alignment explanation
Indices: 67389759--67389982 Score: 265
Period size: 40 Copynumber: 5.5 Consensus size: 40
67389749 ACCCAAGTAT
* * *
67389759 CTTCAGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
67389798 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
67389838 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
67389878 CTTCGAGACTTAGCCCGGGTATAG-CAACTACTCACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
** * *
67389921 CTTCGGGACTTATTCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
67389961 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
67389983 CATCCAAATA
Statistics
Matches: 157, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
39 11 0.07
40 113 0.72
41 1 0.01
43 32 0.20
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:67389955 original size:83 final size:80
Alignment explanation
Indices: 67389759--67389982 Score: 272
Period size: 83 Copynumber: 2.8 Consensus size: 80
67389749 ACCCAAGTAT
* * * * *
67389759 CTTCAGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
* **
67389823 CACTAGCATGAATGC
66 CACTAACACAAATGC
* * *
67389838 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGAGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
67389902 CAACTACTCACACAAATGC
66 C-ACTA---ACACAAATGC
** *
67389921 CTTCGGGACTTATTCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
67389983 CATCCAAATA
Statistics
Matches: 123, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
79 12 0.10
80 48 0.39
83 63 0.51
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAACACAAATGC
Found at i:67393666 original size:40 final size:40
Alignment explanation
Indices: 67393611--67393818 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
67393601 TGAATGATAC
* * *
67393611 CCGGGATAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
67393651 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
67393691 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
67393731 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * * *
67393771 CCTGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
67393811 CC-GGCTAA
1 CCGGGCTAA
67393819 ATTCCGAAGA
Statistics
Matches: 144, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 6 0.04
40 136 0.94
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:67398753 original size:24 final size:24
Alignment explanation
Indices: 67398721--67398783 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
67398711 AATCTCAAAT
67398721 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
67398745 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
67398769 ACACTATGTGTGCGA
1 GCACTATGTGTGCGA
67398784 ACATAATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:67401276 original size:49 final size:49
Alignment explanation
Indices: 67401150--67401462 Score: 494
Period size: 49 Copynumber: 6.5 Consensus size: 49
67401140 CCCTTCGGGA
* * * * * *
67401150 CTTATCACAT-T-TATACACTTCCACATCCATCACTTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67401197 CCTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67401244 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67401293 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67401342 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67401391 CTTATCACATATATATACACTTTCATATT--TCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67401438 CTTATCACATATATATACACTTTCA
1 CTTATCACATATATATACACTTTCA
67401463 TATTTTTCTT
Statistics
Matches: 251, Mismatches: 11, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 87 0.35
49 163 0.65
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67408638 original size:49 final size:49
Alignment explanation
Indices: 67408511--67408766 Score: 385
Period size: 49 Copynumber: 5.3 Consensus size: 49
67408501 CCCTTCGGGA
* * * * * * * *
67408511 CTTATCACAT-T-TATATACTTCCACATCCATCACTTTGGCCACTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67408558 CCTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
67408605 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
67408654 CTTATCACATATATACACACATTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
67408703 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
67408752 CTTATCACATATATA
1 CTTATCACATATATA
67408767 TATCTCATAC
Statistics
Matches: 194, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
47 49 0.25
48 1 0.01
49 144 0.74
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67414378 original size:24 final size:24
Alignment explanation
Indices: 67414346--67414432 Score: 174
Period size: 24 Copynumber: 3.6 Consensus size: 24
67414336 AATCTCAAAT
67414346 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
67414370 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
67414394 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
67414418 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
67414433 ACATAATAAG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 63 1.00
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:67414446 original size:48 final size:48
Alignment explanation
Indices: 67414346--67414454 Score: 166
Period size: 48 Copynumber: 2.3 Consensus size: 48
67414336 AATCTCAAAT
** * *
67414346 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGACATAATATA
67414394 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ACATAATATA
67414442 GCACTATGTGTGC
1 GCACTATGTGTGC
67414455 AACATTCGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
48 51 0.91
49 5 0.09
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGACATAATATA
Found at i:67419689 original size:29 final size:29
Alignment explanation
Indices: 67419655--67419725 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 29
67419645 TCAACCACGT
* *
67419655 ACACTTAGTGCCATGTACTTT-AAACTCGC
1 ACACTTAGTGCCATGCA-TTTCAAACCCGC
*
67419684 ACACTTAGTGCCATGCATTTCAAGCCCGC
1 ACACTTAGTGCCATGCATTTCAAACCCGC
67419713 ACACTTAGTGCCA
1 ACACTTAGTGCCA
67419726 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
ACACTTAGTGCCATGCATTTCAAACCCGC
Found at i:67421635 original size:93 final size:93
Alignment explanation
Indices: 67421523--67421694 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67421513 GCCCATAAGT
* *
67421523 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67421588 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
67421616 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67421681 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
67421695 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67421690 original size:46 final size:46
Alignment explanation
Indices: 67421515--67421690 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
67421505 TGTAACCCGC
* * *
67421515 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
67421561 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
67421611 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
67421654 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67421691 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:67424110 original size:29 final size:29
Alignment explanation
Indices: 67424071--67424158 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
67424061 CAAAGATAAC
*
67424071 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
67424100 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
67424129 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
67424159 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:67424129 original size:15 final size:15
Alignment explanation
Indices: 67424071--67424149 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
67424061 CAAAGATAAC
*
67424071 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
67424085 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
67424100 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
67424114 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
67424129 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
67424144 AAGAAA
1 AAGAAA
67424150 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:67424158 original size:15 final size:15
Alignment explanation
Indices: 67424082--67424158 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
67424072 AGAAAACCGA
67424082 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
67424097 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
67424111 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
67424125 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
67424141 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
67424156 ATA
1 ATA
67424159 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:67427217 original size:93 final size:93
Alignment explanation
Indices: 67427105--67427276 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67427095 GCCCATAAGT
* *
67427105 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67427170 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
67427198 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67427263 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
67427277 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67427272 original size:46 final size:46
Alignment explanation
Indices: 67427097--67427272 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
67427087 TGTAACCCGC
* * *
67427097 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
67427143 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
67427193 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
67427236 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67427273 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:67429577 original size:40 final size:40
Alignment explanation
Indices: 67429475--67429626 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
67429465 AAATTGAATG
* * * * *
67429475 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* ***
67429515 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* *
67429555 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* * *
67429595 CTATCCGGGCCAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
67429627 ACGTGATTTT
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
39 3 0.03
40 88 0.95
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:67434505 original size:49 final size:49
Alignment explanation
Indices: 67434445--67434700 Score: 412
Period size: 49 Copynumber: 5.3 Consensus size: 49
67434435 GTATGAGATA
67434445 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
67434494 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
67434543 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
67434592 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * * * * *
67434639 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
67434686 TATAAATGTGATAAG
1 TATATATGTGATAAG
67434701 TCCCGAAGGG
Statistics
Matches: 198, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 56 0.28
49 142 0.72
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:67438027 original size:37 final size:36
Alignment explanation
Indices: 67437977--67438063 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
67437967 TACGAAGTCT
67437977 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
67438013 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
67438050 TCACCCGGAACATA
1 T-ACCCGG-ACATA
67438064 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:67438318 original size:56 final size:49
Alignment explanation
Indices: 67438132--67438487 Score: 613
Period size: 49 Copynumber: 7.1 Consensus size: 49
67438122 TTTACCACAT
* *
67438132 ATATATATACACTTTCACATTCATCACGTCTGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
67438181 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
67438230 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
67438279 ATATATATACACTTTCACATTCATCACATCGGCCATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCAT--CA-----CATCGGCCATTAGGCCTTATCAC
67438335 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
67438384 ATATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
67438433 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
67438482 ATATAT
1 ATATAT
67438488 TATTATGTAC
Statistics
Matches: 296, Mismatches: 4, Indels: 14
0.94 0.01 0.04
Matches are distributed among these distances:
49 245 0.83
51 2 0.01
54 2 0.01
56 47 0.16
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:67438370 original size:154 final size:154
Alignment explanation
Indices: 67438132--67438468 Score: 598
Period size: 154 Copynumber: 2.2 Consensus size: 154
67438122 TTTACCACAT
*
67438132 ATATATATACACTTTCACATTCAT--CA-C-G---TCTGCCATTAGGCCTTATCACATATATATA
1 ATATATATACACTTTCACATTCATCACATCGGCCATCGGCCATTAGGCCTTATCACATATATATA
*
67438190 CACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
66 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
67438255 ACATCGGCCATTAGGCCTTATCAC
131 ACATCGGCCATTAGGCCTTATCAC
67438279 ATATATATACACTTTCACATTCATCACATCGGCCATCGGCCATTAGGCCTTATCACATATATATA
1 ATATATATACACTTTCACATTCATCACATCGGCCATCGGCCATTAGGCCTTATCACATATATATA
*
67438344 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCGTC
66 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
67438409 ACATCGGCCATTAGGCCTTATCAC
131 ACATCGGCCATTAGGCCTTATCAC
67438433 ATATATATACACTTTCACATTCATCACATCGGCCAT
1 ATATATATACACTTTCACATTCATCACATCGGCCAT
67438469 TAGGCCTTAT
Statistics
Matches: 180, Mismatches: 3, Indels: 7
0.95 0.02 0.04
Matches are distributed among these distances:
147 24 0.13
149 2 0.01
150 1 0.01
151 1 0.01
154 152 0.84
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (154 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATCGGCCATTAGGCCTTATCACATATATATA
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
ACATCGGCCATTAGGCCTTATCAC
Found at i:67443026 original size:46 final size:46
Alignment explanation
Indices: 67442976--67443148 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
67442966 TGGTTGAGCA
* *
67442976 TCCGAACTCGTTGAGTTGTGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
* * *
67443022 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGTA-AAATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAA-T--G
*
67443067 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATAGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
* * *
67443115 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67443149 GGGTCCTTAT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 1 0.01
46 57 0.54
47 27 0.26
48 1 0.01
49 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
Found at i:67443132 original size:93 final size:93
Alignment explanation
Indices: 67442973--67443143 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
67442963 GGATGGTTGA
* * *
67442973 GCATCCGAACTCGTTGAGTTGTGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATGCCCGAACTCGTTGAGT
*
67443038 TGAGTCCGAGTTCGTAAAATGTAACTAG
66 TGAGTCCAAGTTCGTAAAATGTAACTAG
* *
67443066 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATAGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATGCCCGAACTCGTTGAGT
67443131 TGAGTCCAAGTTC
66 TGAGTCCAAGTTC
67443144 ACTTAGGGTC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTAAAATGTAACTAG
Found at i:67452759 original size:38 final size:38
Alignment explanation
Indices: 67452717--67452792 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
67452707 TGTGACTAAC
67452717 TCTTTGATTGAGTGCATGTGATAGAGAACCATGTCATA
1 TCTTTGATTGAGTGCATGTGATAGAGAACCATGTCATA
67452755 TCTTTGATTGAGTGCATGTGATAGAGAACCATGTCATA
1 TCTTTGATTGAGTGCATGTGATAGAGAACCATGTCATA
67452793 CTTGTTGGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.34
Consensus pattern (38 bp):
TCTTTGATTGAGTGCATGTGATAGAGAACCATGTCATA
Found at i:67455586 original size:28 final size:28
Alignment explanation
Indices: 67455517--67455617 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
67455507 GACAAGATTG
* * * *
67455517 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
67455547 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
67455575 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
67455604 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
67455618 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:67475059 original size:17 final size:18
Alignment explanation
Indices: 67475017--67475065 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
67475007 AGTTGAAAAG
67475017 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
67475036 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
67475053 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
67475066 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:67475951 original size:40 final size:39
Alignment explanation
Indices: 67475885--67476027 Score: 119
Period size: 40 Copynumber: 3.6 Consensus size: 39
67475875 AAATTGAATG
* * *
67475885 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGCCCGAAGGCAATTATGCTAGAAACT
* * ***
67475924 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAG-CCCGAAGGCAATTATGCTAGAAACT
* * **
67475964 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTA-T
1 ATATCCGGGCTAA-GCCCGAAGGCAATT-ATGCTAGAAACT
*
67476003 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGGCA
67476028 TTTGTGCACG
Statistics
Matches: 86, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 38 0.44
40 46 0.53
41 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGCCCGAAGGCAATTATGCTAGAAACT
Found at i:67476013 original size:39 final size:39
Alignment explanation
Indices: 67475923--67476034 Score: 136
Period size: 40 Copynumber: 2.8 Consensus size: 39
67475913 TGCTGGAAAT
* * *
67475923 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGGA
* *
67475963 TATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGT-TA
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGGA
*
67476002 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGC
67476035 ACGTGATTAA
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
39 31 0.49
40 32 0.51
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.24
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGGA
Found at i:67476048 original size:39 final size:40
Alignment explanation
Indices: 67475885--67476049 Score: 151
Period size: 39 Copynumber: 4.2 Consensus size: 40
67475875 AAATTGAATG
* * * **
67475885 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGATT
* * * **
67475924 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * *
67475964 ATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTTA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
67476003 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGATT
67476043 A-ATCCGG
1 ATATCCGG
67476050 TTATATTCCG
Statistics
Matches: 102, Mismatches: 20, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
38 1 0.01
39 52 0.51
40 49 0.48
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:67483931 original size:40 final size:40
Alignment explanation
Indices: 67483865--67484031 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
67483855 AAATTGAATG
* * *
67483865 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
67483904 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
67483944 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
67483984 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
67484024 ATATCCGG
1 ATATCCGG
67484032 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:67490996 original size:29 final size:28
Alignment explanation
Indices: 67490964--67491037 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 28
67490954 GATTCAAGCC
* *
67490964 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACAC-TAGTGCCATACAGTACAAACT
* *
67490993 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACAC-TAGTGCCATACAGTACAAACT
67491022 CGCACACTCAGTGCCA
1 CGCACACT-AGTGCCA
67491038 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 1 0.03
29 38 0.97
ACGTcount: A:0.31, C:0.34, G:0.15, T:0.20
Consensus pattern (28 bp):
CGCACACTAGTGCCATACAGTACAAACT
Found at i:67494213 original size:74 final size:74
Alignment explanation
Indices: 67494134--67494280 Score: 285
Period size: 74 Copynumber: 2.0 Consensus size: 74
67494124 CCTATGAGTA
67494134 TTTGCACAATTTCAATCCATATAACTATATCAACTCAATGAGATTCATATACATAATATCATCTA
1 TTTGCACAATTTCAATCCATATAACTATATCAACTCAATGAGATTCATATACATAATATCATCTA
67494199 CCACTTAGT
66 CCACTTAGT
*
67494208 TTTGCACAGTTTCAATCCATATAACTATATCAACTCAATGAGATTCATATACATAATATCATCTA
1 TTTGCACAATTTCAATCCATATAACTATATCAACTCAATGAGATTCATATACATAATATCATCTA
67494273 CCACTTAG
66 CCACTTAG
67494281 GCATTATACA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 72 1.00
ACGTcount: A:0.37, C:0.22, G:0.06, T:0.35
Consensus pattern (74 bp):
TTTGCACAATTTCAATCCATATAACTATATCAACTCAATGAGATTCATATACATAATATCATCTA
CCACTTAGT
Found at i:67496515 original size:92 final size:92
Alignment explanation
Indices: 67496358--67496526 Score: 304
Period size: 92 Copynumber: 1.8 Consensus size: 92
67496348 GGATGGTTGA
*
67496358 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGTCCGAACTCGTTGAGTT
67496423 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
67496450 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGTCCGAACTCGTTGAGT
67496514 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
67496527 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 61 0.82
93 13 0.18
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGTCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67496530 original size:45 final size:46
Alignment explanation
Indices: 67496361--67496531 Score: 210
Period size: 45 Copynumber: 3.7 Consensus size: 46
67496351 TGGTTGAGCA
*
67496361 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
67496406 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
67496451 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
67496499 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67496532 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 8, Indels: 20
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 63 0.58
47 29 0.27
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:67510673 original size:43 final size:43
Alignment explanation
Indices: 67510625--67510711 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 43
67510615 ACAAGTCGTA
*
67510625 CAATGCCAAC-GTCCCAAAC-GTGGTCTTACATGTAATCACATAT
1 CAATGCC-ACTGTCCCAAACAG-GGTCTTACATGTAAACACATAT
* * *
67510668 CAATGCCACTGTCCTAGACAGGGTCTTACTTGTAAACACATAT
1 CAATGCCACTGTCCCAAACAGGGTCTTACATGTAAACACATAT
67510711 C
1 C
67510712 GGAATCACAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
42 2 0.05
43 35 0.92
44 1 0.03
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (43 bp):
CAATGCCACTGTCCCAAACAGGGTCTTACATGTAAACACATAT
Found at i:67515619 original size:55 final size:55
Alignment explanation
Indices: 67515518--67515624 Score: 121
Period size: 55 Copynumber: 1.9 Consensus size: 55
67515508 ATTTTAGGTC
* * *
67515518 AGTATTGAACACGAGCAGGCCACACAGGTGTGTGCCTTAGCCGTGCTTAAAAAAT
1 AGTATTGAACACGAGCAGGCCACACAGGCGTGTGCCTAAGCCGTGCTGAAAAAAT
* *
67515573 AGTATTGAACAC-AGGTC-GGCCACACGGGCGTGTGCC-AAGGCTGTGCTGAAAA
1 AGTATTGAACACGA-G-CAGGCCACACAGGCGTGTGCCTAA-GCCGTGCTGAAAA
67515625 GTCAGTGTTG
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
54 2 0.05
55 41 0.93
56 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (55 bp):
AGTATTGAACACGAGCAGGCCACACAGGCGTGTGCCTAAGCCGTGCTGAAAAAAT
Found at i:67518020 original size:11 final size:11
Alignment explanation
Indices: 67517992--67518022 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
67517982 ACACATTCAT
67517992 CTTTCATATTC
1 CTTTCATATTC
67518003 C-TTCATATTC
1 CTTTCATATTC
67518013 CTTTCATATT
1 CTTTCATATT
67518023 AAGCTTGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.19, C:0.26, G:0.00, T:0.55
Consensus pattern (11 bp):
CTTTCATATTC
Found at i:67529698 original size:46 final size:46
Alignment explanation
Indices: 67529648--67529819 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
67529638 TGGTTGAGCA
67529648 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
67529694 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* *
67529738 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
67529786 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67529820 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 8, Indels: 20
0.79 0.06 0.15
Matches are distributed among these distances:
41 2 0.02
42 9 0.08
44 1 0.01
45 1 0.01
46 84 0.78
47 1 0.01
48 1 0.01
50 7 0.06
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:67529802 original size:92 final size:92
Alignment explanation
Indices: 67529645--67529813 Score: 302
Period size: 92 Copynumber: 1.8 Consensus size: 92
67529635 GGATGGTTGA
* * *
67529645 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67529710 TGAGTCCGAGTTTGTGAATGTAACTAG
66 TGAGTCCGAGTTTGTGAATGTAACTAG
*
67529737 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67529802 TGAGTCCGAGTT
66 TGAGTCCGAGTT
67529814 CACTTAGGGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAATGTAACTAG
Found at i:67536195 original size:40 final size:40
Alignment explanation
Indices: 67536136--67536277 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
67536126 AAATTGAATG
* * *
67536136 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
67536176 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
67536216 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
67536256 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
67536278 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:67536278 original size:40 final size:39
Alignment explanation
Indices: 67536175--67536303 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
67536165 TGCTGGAAAT
* * *
67536175 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
67536215 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
67536255 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
67536295 TATATCCGG
1 TATATCCGG
67536304 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:67552314 original size:67 final size:68
Alignment explanation
Indices: 67552187--67552554 Score: 258
Period size: 67 Copynumber: 5.5 Consensus size: 68
67552177 GCTGTAATGA
* * * * * *
67552187 GGTATACTGTGTAAGACCATAGCTCGACTATGGCAACATAGA-AAGT-CCGCTATGAA-ATTAAA
1 GGTATAATGTGTAAGACCATAGCTCAACTATGACAACAAAGAGAA-TATCACTA-GAACATTAAA
67552249 CATGG
64 CATGG
* * *
67552254 GGTATAATGTAG-AAGACCATAGCTCGACTATGATAACAAAGAGAATATGC-CGA-AACATTAAA
1 GGTATAATGT-GTAAGACCATAGCTCAACTATGACAACAAAGAGAATAT-CACTAGAACATTAAA
*
67552316 CATTG
64 CATGG
* * * * *
67552321 GTTATGATGTGTAAGACCATAGCTCAACTATGGA-AACATATAGAAT-CCACTAGAACATTAAAC
1 GGTATAATGTGTAAGACCATAGCTCAACTAT-GACAACAAAGAGAATATCACTAGAACATTAAAC
67552384 ATGG
65 ATGG
* * * ** * * * * *
67552388 GATATAATCTGTAAGACCATAGCTTAGTTATGGCAAC-ATGA-AATGTCTGCTAGGACATTAAAC
1 GGTATAATGTGTAAGACCATAGCTCAACTATGACAACAAAGAGAATATC-ACTAGAACATTAAAC
67552451 ATGG
65 ATGG
* * * * * *
67552455 GGTATAATGTGTAAGACCATATCTCAACTATGGCAACATAGAGAGT-TCACCA-AGATATTAAAC
1 GGTATAATGTGTAAGACCATAGCTCAACTATGACAACAAAGAGAATATCACTAGA-ACATTAAAC
*
67552518 ATGA
65 ATGG
* * *
67552522 GGTATGATGTATGAA-ACCATAGCTCGACTATGA
1 GGTATAATGTGT-AAGACCATAGCTCAACTATGA
67552555 TAGCATATGG
Statistics
Matches: 238, Mismatches: 47, Indels: 32
0.75 0.15 0.10
Matches are distributed among these distances:
65 4 0.02
66 8 0.03
67 210 0.88
68 13 0.05
69 3 0.01
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (68 bp):
GGTATAATGTGTAAGACCATAGCTCAACTATGACAACAAAGAGAATATCACTAGAACATTAAACA
TGG
Found at i:67552570 original size:134 final size:134
Alignment explanation
Indices: 67552187--67552579 Score: 363
Period size: 134 Copynumber: 2.9 Consensus size: 134
67552177 GCTGTAATGA
* * * * * *
67552187 GGTATACTGTGTAAGACCATAGCTCGACTATGGCAACATAGAAAGTCCGCTATGAAATTAAACAT
1 GGTATAATGTGTAAGACCATAGCTCAACTATGGCAACATAGAGAGTCCACCAAGAAATTAAACAT
* * * * *
67552252 GGGGTATAATGTA-GAAGACCATAGCTCGACTATGATAACAAAGAGAATATGCCGAAACATTAAA
66 -GGGTATAATGTATGAAGACCATAGCTCGACTATGATAGCAATGAGAGTCTGCAGAAACATTAAA
*
67552316 CATTG
130 CATGG
* * * * * *
67552321 GTTATGATGTGTAAGACCATAGCTCAACTATGGAAACATATAGAATCCA-CTAGAACATTAAACA
1 GGTATAATGTGTAAGACCATAGCTCAACTATGGCAACATAGAGAGTCCACCAAGAA-ATTAAACA
* * * * * * *
67552385 TGGGATATAATCTGT-AAGACCATAGCT-TAGT-T-ATGGCAACATGAAATGTCTGCTAG-GACA
65 TGGG-TATAATGTATGAAGACCATAGCTCGACTATGATAGC-A-ATGAGA-GTCTGC-AGAAACA
67552445 TTAAACATGG
125 TTAAACATGG
* * *
67552455 GGTATAATGTGTAAGACCATATCTCAACTATGGCAACATAGAGAGTTCACCAAGATATTAAACAT
1 GGTATAATGTGTAAGACCATAGCTCAACTATGGCAACATAGAGAGTCCACCAAGAAATTAAACAT
*
67552520 GAGGTATGATGTATGAA-ACCATAGCTCGACTATGATAGCATATG-GAGTCTGTCGAGAAAC
66 G-GGTATAATGTATGAAGACCATAGCTCGACTATGATAGCA-ATGAGAGTCTG-C-AGAAAC
67552580 TAAACGTGAG
Statistics
Matches: 200, Mismatches: 44, Indels: 28
0.74 0.16 0.10
Matches are distributed among these distances:
131 3 0.01
132 2 0.01
133 12 0.06
134 157 0.79
135 15 0.08
136 7 0.04
137 4 0.02
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (134 bp):
GGTATAATGTGTAAGACCATAGCTCAACTATGGCAACATAGAGAGTCCACCAAGAAATTAAACAT
GGGTATAATGTATGAAGACCATAGCTCGACTATGATAGCAATGAGAGTCTGCAGAAACATTAAAC
ATGG
Found at i:67555753 original size:93 final size:93
Alignment explanation
Indices: 67555641--67555812 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
67555631 CGCCCATAAG
* * *
67555641 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
67555706 ACGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
* *
67555734 CGAACTCGGACTCAACTCAACGAGTTCGGATATTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
67555799 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
67555813 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:67555809 original size:46 final size:46
Alignment explanation
Indices: 67555642--67555810 Score: 187
Period size: 46 Copynumber: 3.7 Consensus size: 46
67555632 GCCCATAAGC
*** *
67555642 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATATTCGCATCCATAAAT
** * * * ** *
67555688 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGAT-ATTCGCATCCA-TAAAT
*
67555735 GAACTCGGACTCAACTCAACGAGTTCGGATATTCGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGCTCGGATATTCGCATCCATAAAT
*
67555781 GAACTCGGACTCAACTCAACGAGTTCGGAT
1 GAACTCGGACTCAACTCAACGAGCTCGGAT
67555811 GCTCAACCAT
Statistics
Matches: 100, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 65 0.65
47 35 0.35
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATATTCGCATCCATAAAT
Found at i:67557637 original size:40 final size:40
Alignment explanation
Indices: 67557589--67557777 Score: 290
Period size: 40 Copynumber: 4.7 Consensus size: 40
67557579 GCTACTCGCT
67557589 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
* *
67557629 CAATTGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
*
67557669 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
* * * *
67557709 CAAATGCCTTCAGGACTTAGCCCGG-AATTAGTCATTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTAGCA
*
67557749 CAAATGCCTTCAGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
67557778 CATCCGAATA
Statistics
Matches: 137, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 135 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
Found at i:67557688 original size:80 final size:78
Alignment explanation
Indices: 67557556--67557777 Score: 293
Period size: 80 Copynumber: 2.8 Consensus size: 78
67557546 CAACCAAGTA
** *
67557556 CCTTCGGGGTTTAG-CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGG-TATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
*
67557620 TAACTAGCACAATTG
64 TAACTAGCACAAATG
67557635 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGG-TATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
*
67557700 TAACTTGCACAAATG
64 TAACTAGCACAAATG
* * * * *
67557715 CCTTCAGGACTTAGCCCGGAATTAGTCATTAGCACAAATGCCTTCAGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
67557778 CATCCGAATA
Statistics
Matches: 128, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
79 14 0.11
80 114 0.89
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCCGGTATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
ACTAGCACAAATG
Found at i:67559858 original size:43 final size:43
Alignment explanation
Indices: 67559795--67559998 Score: 207
Period size: 43 Copynumber: 4.8 Consensus size: 43
67559785 AATTTTTTTA
* * * *
67559795 ATAAAAATGCCCCTATAGAACATGACCTTTAGTGGCGCTTCTC
1 ATAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTC
* * * *
67559838 ATAAAAACGCCGCTAAAGAACATGACTTTTTGCGACGCTTCTA
1 ATAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTC
*** * *
67559881 ATAAAAACGCTATTAAAGAACATGACCTTTAGCGGCACTTTTC
1 ATAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTC
* * * *
67559924 -CAGAAACGCTGCTAAAGAACATGACCTTTAACGGCGCTTTCTC
1 ATAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGC-TTCTC
* *
67559967 CT-CAAACGCCGCTAAAG-ACATGACCTTTAGCG
1 ATAAAAACGCCGCTAAAGAACATGACCTTTAGCG
67559999 ATATTTTCCC
Statistics
Matches: 131, Mismatches: 28, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
42 45 0.34
43 86 0.66
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
ATAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTC
Found at i:67560016 original size:42 final size:42
Alignment explanation
Indices: 67559797--67560026 Score: 142
Period size: 43 Copynumber: 5.4 Consensus size: 42
67559787 TTTTTTTAAT
* * * * * * **
67559797 AAAAATGCCCCTATAGAACATGACCTTTAGTGGCGCTTCTCAT
1 AAAAACGCCGCTAAAGAACATGACCTTTAGCGGC-ATTTTCCC
* * * ***
67559840 AAAAACGCCGCTAAAGAACATGACTTTTTGCGACGC-TTCTAAT
1 AAAAACGCCGCTAAAGAACATGACCTTTAGCG--GCATTTTCCC
***
67559883 AAAAACGCTATTAAAGAACATGACCTTTAGCGGCACTTTT-CC
1 AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCA-TTTTCCC
* * * **
67559925 AGAAACGCTGCTAAAGAACATGACCTTTAACGGCGCTTTCTCC
1 AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCATTTTC-CC
** **
67559968 TCAAACGCCGCTAAAG-ACATGACCTTTAGCGATATTTTCCCC
1 AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCATTTT-CCC
*
67560010 AAAAACGCCACTAAAGA
1 AAAAACGCCGCTAAAGA
67560027 CCATATCAAA
Statistics
Matches: 147, Mismatches: 32, Indels: 16
0.75 0.16 0.08
Matches are distributed among these distances:
41 5 0.03
42 62 0.42
43 78 0.53
45 2 0.01
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCATTTTCCC
Found at i:67562773 original size:48 final size:48
Alignment explanation
Indices: 67562702--67562895 Score: 307
Period size: 48 Copynumber: 4.0 Consensus size: 48
67562692 CAAGATAAAT
*
67562702 ATATATATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* **
67562750 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
67562798 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
67562846 ATATGTATATTTGGTAAAGCTGAATGGCTAATGTGAAATATGTAGGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
67562894 AT
1 AT
67562896 GTGTTTATAT
Statistics
Matches: 133, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 133 1.00
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:67563090 original size:37 final size:37
Alignment explanation
Indices: 67563040--67563145 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
67563030 ATATATTCCA
67563040 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
*
67563077 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
* * *
67563114 GGTAAGACCCGATAACTACATGTGGGGATTAT
1 GGTAAGACCCGATGACTACGTGTGGAGATTAT
67563146 TCGAGCTAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
Found at i:67564444 original size:23 final size:23
Alignment explanation
Indices: 67564418--67564496 Score: 131
Period size: 23 Copynumber: 3.4 Consensus size: 23
67564408 ACATAAAGAA
67564418 CATTTAAACACTTCAATTTACAG
1 CATTTAAACACTTCAATTTACAG
* *
67564441 CATTTAAATACTTCAATTTACAA
1 CATTTAAACACTTCAATTTACAG
*
67564464 CATTTAAACACTTCAATTTATAG
1 CATTTAAACACTTCAATTTACAG
67564487 CATTTAAACA
1 CATTTAAACA
67564497 GCAGTAACCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.42, C:0.19, G:0.03, T:0.37
Consensus pattern (23 bp):
CATTTAAACACTTCAATTTACAG
Found at i:67566784 original size:27 final size:27
Alignment explanation
Indices: 67566738--67566789 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
67566728 CAGTAACAAT
*
67566738 TGGGCCTAGCCCATTAACAGAATCAGG
1 TGGGCCTAGCCCAGTAACAGAATCAGG
67566765 TGGGCCTAAGCCCAGT-ACAGAATCA
1 TGGGCCT-AGCCCAGTAACAGAATCA
67566790 ATATCAGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.31, C:0.27, G:0.25, T:0.17
Consensus pattern (27 bp):
TGGGCCTAGCCCAGTAACAGAATCAGG
Found at i:67566980 original size:22 final size:22
Alignment explanation
Indices: 67566931--67566980 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
67566921 CACCAAGTCA
* *
67566931 ACAGGATGGCTCAACTCCGTAG
1 ACAGGACGGCTCAACTCCGAAG
*
67566953 ATAGGACGGCTCAA-TGCCGAAG
1 ACAGGACGGCTCAACT-CCGAAG
67566975 ACAGGA
1 ACAGGA
67566981 TGACCCAACG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 1 0.04
22 22 0.96
ACGTcount: A:0.32, C:0.24, G:0.30, T:0.14
Consensus pattern (22 bp):
ACAGGACGGCTCAACTCCGAAG
Found at i:67567137 original size:95 final size:95
Alignment explanation
Indices: 67566997--67567207 Score: 307
Period size: 95 Copynumber: 2.2 Consensus size: 95
67566987 AACGTCGTAG
* * * * *
67566997 ACAGGACGGGTAAAGGCCGTAAATATAGCAGCAATGCTGCCAGTTAACAGAACGGCTATAAGCCA
1 ACAGGACGGCTACAGGCCGTAAATATAGCAACAACGCTGCCAGTTAAAAGAACGGCTATAAGCCA
67567062 TAAGTAT-GACAGAAAGGATGAAAGCCTTAT
66 TAAGTATCG-CAGAAAGGATGAAAGCCTTAT
* *
67567092 ACAGGACGGCTACAGGCCGTAAATATCGCAACAACGCTGCCAGTTAAAAGAACTGCTATAAGCCA
1 ACAGGACGGCTACAGGCCGTAAATATAGCAACAACGCTGCCAGTTAAAAGAACGGCTATAAGCCA
* *
67567157 TAAGTATCGCAGAAAGGCTGAAAGTCTTAT
66 TAAGTATCGCAGAAAGGATGAAAGCCTTAT
* *
67567187 ACAGGACGACTACAAGCCGTA
1 ACAGGACGGCTACAGGCCGTA
67567208 CACTTCCTCC
Statistics
Matches: 104, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
95 103 0.99
96 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.18
Consensus pattern (95 bp):
ACAGGACGGCTACAGGCCGTAAATATAGCAACAACGCTGCCAGTTAAAAGAACGGCTATAAGCCA
TAAGTATCGCAGAAAGGATGAAAGCCTTAT
Found at i:67569098 original size:18 final size:19
Alignment explanation
Indices: 67569060--67569100 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
67569050 CATGATGTGT
67569060 AAATAGTATTTTCTTTCAA
1 AAATAGTATTTTCTTTCAA
67569079 AAATAG-ATTTT-TTTCTAA
1 AAATAGTATTTTCTTTC-AA
67569097 AAAT
1 AAAT
67569101 CTCACTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.19
18 11 0.52
19 6 0.29
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.46
Consensus pattern (19 bp):
AAATAGTATTTTCTTTCAA
Found at i:67581744 original size:21 final size:21
Alignment explanation
Indices: 67581720--67581767 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
67581710 TGGTCAATAT
*
67581720 ATATGGCAATCTATTGGAAGA
1 ATATGACAATCTATTGGAAGA
*
67581741 ATATGACAATCTGTTGGAAGA
1 ATATGACAATCTATTGGAAGA
*
67581762 AGATGA
1 ATATGA
67581768 AAGCATCTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.40, C:0.08, G:0.25, T:0.27
Consensus pattern (21 bp):
ATATGACAATCTATTGGAAGA
Found at i:67582560 original size:72 final size:73
Alignment explanation
Indices: 67582437--67582583 Score: 190
Period size: 72 Copynumber: 2.0 Consensus size: 73
67582427 TTTGGGTATA
* * * *
67582437 AAATAGAAGAACAGGTTGAGAAAGGCTGAGAAAAAAAAGGAAATTAGGAAAGAAAAGGGAATCGG
1 AAATAGAAGAACAGGCTGAGAAAGGCTAAGAAAAAAAAGGAAATGAGGAAAGAAAAGGAAATCGG
67582502 G-GGAGAG
66 GAGGAGAG
* * * * *
67582509 AAATAGAGGAACAGGCTGAGAATGGCTAAGAAATAAAAGGAAATCGA-GAAAGAAGAGGAAATTG
1 AAATAGAAGAACAGGCTGAGAAAGGCTAAGAAAAAAAAGGAAAT-GAGGAAAGAAAAGGAAATCG
67582573 GGAGGAGAG
65 GGAGGAGAG
67582582 AA
1 AA
67582584 TATAACGGCG
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
72 55 0.86
73 9 0.14
ACGTcount: A:0.51, C:0.05, G:0.34, T:0.10
Consensus pattern (73 bp):
AAATAGAAGAACAGGCTGAGAAAGGCTAAGAAAAAAAAGGAAATGAGGAAAGAAAAGGAAATCGG
GAGGAGAG
Found at i:67583081 original size:17 final size:18
Alignment explanation
Indices: 67583048--67583081 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67583038 TATCTCTTAA
67583048 ATAATTTAAACTATATTG
1 ATAATTTAAACTATATTG
*
67583066 ATAATTTTAA-TATATT
1 ATAATTTAAACTATATT
67583082 AAAATTAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
ATAATTTAAACTATATTG
Found at i:67583524 original size:21 final size:20
Alignment explanation
Indices: 67583500--67583546 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
67583490 ATAAAACATA
67583500 AACCTTAAACCTTAAACCCCT
1 AACCTTAAACCTT-AACCCCT
* *
67583521 AACCCTTAACCCTTAACCTCT
1 AA-CCTTAAACCTTAACCCCT
67583542 AACCT
1 AACCT
67583547 CTAACCCCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 3 0.13
21 10 0.43
22 10 0.43
ACGTcount: A:0.34, C:0.40, G:0.00, T:0.26
Consensus pattern (20 bp):
AACCTTAAACCTTAACCCCT
Found at i:67583582 original size:8 final size:7
Alignment explanation
Indices: 67583569--67583628 Score: 57
Period size: 7 Copynumber: 8.3 Consensus size: 7
67583559 CTTAAACCCC
67583569 AACCATTA
1 AACCA-TA
67583577 AACCATA
1 AACCATA
67583584 AACCATA
1 AACCATA
67583591 AACCATA
1 AACCATA
* *
67583598 ATCCCTA
1 AACCATA
67583605 AACCCATA
1 AA-CCATA
* *
67583613 ATCTATA
1 AACCATA
*
67583620 AACCTTA
1 AACCATA
67583627 AA
1 AA
67583629 ATAGTAACTC
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
7 32 0.76
8 10 0.24
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.22
Consensus pattern (7 bp):
AACCATA
Found at i:67583628 original size:7 final size:7
Alignment explanation
Indices: 67583498--67583608 Score: 50
Period size: 7 Copynumber: 15.9 Consensus size: 7
67583488 TTATAAAACA
67583498 TAAACCT
1 TAAACCT
67583505 TAAACCT
1 TAAACCT
*
67583512 TAAACCCC
1 TAAA-CCT
*
67583520 TAACCCT
1 TAAACCT
*
67583527 TAACCCT
1 TAAACCT
67583534 T-AACCT
1 TAAACCT
67583540 CT-AACCT
1 -TAAACCT
* *
67583547 CTAACCCC
1 -TAAACCT
67583555 TAAA-CT
1 TAAACCT
67583561 TAAACC-
1 TAAACCT
**
67583567 CCAACCAT
1 TAAACC-T
*
67583575 TAAACCA
1 TAAACCT
*
67583582 TAAACCA
1 TAAACCT
*
67583589 TAAACCA
1 TAAACCT
* *
67583596 TAATCCC
1 TAAACCT
67583603 TAAACC
1 TAAACC
67583609 CATAATCTAT
Statistics
Matches: 82, Mismatches: 16, Indels: 12
0.75 0.15 0.11
Matches are distributed among these distances:
6 13 0.16
7 57 0.70
8 12 0.15
ACGTcount: A:0.41, C:0.38, G:0.00, T:0.22
Consensus pattern (7 bp):
TAAACCT
Found at i:67584154 original size:40 final size:39
Alignment explanation
Indices: 67584110--67584243 Score: 115
Period size: 40 Copynumber: 3.4 Consensus size: 39
67584100 ATTTTTTTGC
* * *
67584110 GGCGTTTTTCAAAAACCGCTAGTAATGGTTGACCTATAGT
1 GGCGTTTTTCAAAAAACGCTACTAATGGTCGA-CTATAGT
** * *
67584150 GGCGTTTTAGAAAAAGCGCCACTAATGGTCGACTATAGT
1 GGCGTTTTTCAAAAAACGCTACTAATGGTCGACTATAGT
* * * * *
67584189 GGTGTTTTTTAAAAAACGCTGCTAATGCTCTATCTATAGT
1 GGCGTTTTTCAAAAAACGCTACTAATGGTCGA-CTATAGT
* * *
67584229 AGCATTTTTCTAAAA
1 GGCGTTTTTCAAAAA
67584244 GCGCCGCTAA
Statistics
Matches: 74, Mismatches: 19, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 31 0.42
40 43 0.58
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (39 bp):
GGCGTTTTTCAAAAAACGCTACTAATGGTCGACTATAGT
Found at i:67584253 original size:40 final size:39
Alignment explanation
Indices: 67584160--67584256 Score: 97
Period size: 40 Copynumber: 2.5 Consensus size: 39
67584150 GGCGTTTTAG
* * * **
67584160 AAAAAGCGCCACTAATGGTCGACTATAGTGGTGTTTTTT
1 AAAAAGCGCCGCTAATGCTCGACTATAGTAGCATTTTTT
* * *
67584199 AAAAAACGCTGCTAATGCTCTATCTATAGTAGCATTTTTCT
1 AAAAAGCGCCGCTAATGCTCGA-CTATAGTAGCATTTTT-T
67584240 -AAAAGCGCCGCTAATGC
1 AAAAAGCGCCGCTAATGC
67584257 CACTAAAGCT
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
39 17 0.37
40 28 0.61
41 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.31
Consensus pattern (39 bp):
AAAAAGCGCCGCTAATGCTCGACTATAGTAGCATTTTTT
Found at i:67584400 original size:194 final size:195
Alignment explanation
Indices: 67584012--67584431 Score: 486
Period size: 194 Copynumber: 2.2 Consensus size: 195
67584002 TGATAAAGCA
* * * * *
67584012 CCGCTAAAGCTCGATCTACAGCGGCATTTTTCAAAAAACGCCGCTAATTGCCACTAAAGCTTAAC
1 CCGCTAATGCTCAATCTATAGCAGCATTTTTCAAAAAACGCCGCTAATTGCCACTAAAGCTCAAC
** * **
67584077 ATAAAACGACAGCGTTGTGCTTAATTTTTTTGCGGCGTTTTTCAAAAACCGCTAGTAATGGTTGA
66 ATAAAACGACAGCGTTGTGCTTAATTTTTTTGCGGCGTTTTTCAAAAAAAGCTAGTAATGCTCAA
* * * * * *
67584142 CCTATAGTGGCGTTTTAGAAAAAGCGCCACTAATGGTCGACTATAGTGGTGTTTTTTAAAAAACG
131 CCTATAGCGACGTTTTACAAAAAGCGCCACTAATGCTCGACTATAGTGGCGCTTTTTAAAAAACG
* * * * *
67584207 CTGCTAATGCTCTATCTATAGTAGCATTTTTCTAAAAGCGCCGCTAA-TGCCACTAAAGCTCAAC
1 CCGCTAATGCTCAATCTATAGCAGCATTTTTCAAAAAACGCCGCTAATTGCCACTAAAGCTCAAC
** * * *
67584271 ATAAAACGAGGGC-TTGTGCTTAATTTTTTTGCGGCGTTTTTTAAAAAAAGC-CGCTAATTCTCA
66 ATAAAACGACAGCGTTGTGCTTAATTTTTTTGCGGCGTTTTTCAAAAAAAGCTAG-TAATGCTCA
* * * * ** *
67584334 ATCTATAGCGATGTTTTTCAAAAAGCGTCGTTAATGCTCGACCTATAGTGGCGCTTTTTGAAAAA
130 ACCTATAGCGACGTTTTACAAAAAGCGCCACTAATGCTCGA-CTATAGTGGCGCTTTTTAAAAAA
67584399 CG
194 CG
* *
67584401 CCGCTAATGCTCAATCTGTAGCGGCATTTTT
1 CCGCTAATGCTCAATCTATAGCAGCATTTTT
67584432 TATCCAAACG
Statistics
Matches: 186, Mismatches: 37, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
192 1 0.01
193 71 0.38
194 75 0.40
195 39 0.21
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (195 bp):
CCGCTAATGCTCAATCTATAGCAGCATTTTTCAAAAAACGCCGCTAATTGCCACTAAAGCTCAAC
ATAAAACGACAGCGTTGTGCTTAATTTTTTTGCGGCGTTTTTCAAAAAAAGCTAGTAATGCTCAA
CCTATAGCGACGTTTTACAAAAAGCGCCACTAATGCTCGACTATAGTGGCGCTTTTTAAAAAACG
Found at i:67584432 original size:40 final size:40
Alignment explanation
Indices: 67584301--67584448 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
67584291 TAATTTTTTT
* * *
67584301 GCGGCGTTTTTTAAAAAAAGCCGCTAATTCTCAATCTATA
1 GCGGCATTTTTTAAAAAACGCCGCTAATGCTCAATCTATA
* * * * *
67584341 GC-G-ATGTTTTTCAAAAAGCGTCGTTAATGCTCGACCTATA
1 GCGGCAT-TTTTT-AAAAAACGCCGCTAATGCTCAATCTATA
* ** * *
67584381 GTGGCGCTTTTTGAAAAACGCCGCTAATGCTCAATCTGTA
1 GCGGCATTTTTTAAAAAACGCCGCTAATGCTCAATCTATA
**
67584421 GCGGCATTTTTTATCCAAACGCCGCTAA
1 GCGGCATTTTTTA-AAAAACGCCGCTAA
67584449 AAACCTGTTT
Statistics
Matches: 79, Mismatches: 24, Indels: 9
0.71 0.21 0.08
Matches are distributed among these distances:
38 1 0.01
39 6 0.08
40 54 0.68
41 18 0.23
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (40 bp):
GCGGCATTTTTTAAAAAACGCCGCTAATGCTCAATCTATA
Found at i:67599299 original size:28 final size:28
Alignment explanation
Indices: 67599248--67599316 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
67599238 TTTAAAACCC
* *
67599248 TAGGGGT-ATATCAGTAATTATGCTCTT
1 TAGGGGTAATTTCGGTAATTATGCTCTT
*
67599275 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTATGCTCTT
67599303 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
67599317 TGATCTACGC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 7 0.18
28 31 0.82
ACGTcount: A:0.22, C:0.10, G:0.26, T:0.42
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTATGCTCTT
Found at i:67602564 original size:43 final size:43
Alignment explanation
Indices: 67602511--67602615 Score: 165
Period size: 43 Copynumber: 2.4 Consensus size: 43
67602501 CTGACATTTC
*
67602511 GCCTGCTAGGCTCGAAGCCCGATATTATTTCACCGGCATTATA
1 GCCTGCTAGGCTCGAAGCCCGATATTATTTCACCAGCATTATA
* * * *
67602554 GCCTACTAGGCTCGAGGCCCGATATTATTTCACTAGCTTTATA
1 GCCTGCTAGGCTCGAAGCCCGATATTATTTCACCAGCATTATA
67602597 GCCTGCTAGGCTCGAAGCC
1 GCCTGCTAGGCTCGAAGCC
67602616 TGAATTCATC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.28
Consensus pattern (43 bp):
GCCTGCTAGGCTCGAAGCCCGATATTATTTCACCAGCATTATA
Found at i:67603624 original size:9 final size:9
Alignment explanation
Indices: 67603600--67603638 Score: 60
Period size: 9 Copynumber: 4.2 Consensus size: 9
67603590 CTCAAACTTA
*
67603600 ATTTATAAC
1 ATTTAAAAC
67603609 TATTTAAAAC
1 -ATTTAAAAC
67603619 ATTTAAAAC
1 ATTTAAAAC
67603628 ATTTAAAAC
1 ATTTAAAAC
67603637 AT
1 AT
67603639 CCAACACCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
9 20 0.71
10 8 0.29
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.38
Consensus pattern (9 bp):
ATTTAAAAC
Found at i:67605659 original size:28 final size:27
Alignment explanation
Indices: 67605596--67605665 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
67605586 ATAGTGAGTC
67605596 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
67605623 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
67605651 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67605666 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:67611596 original size:21 final size:21
Alignment explanation
Indices: 67611570--67611620 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
67611560 AAAGCCAAAC
*
67611570 AGAAGCTCATAAGAGCTGAAT
1 AGAAGCTCATAAGAGCTGAAA
* *
67611591 AGAAGCTCGTAAGAGCTTAAA
1 AGAAGCTCATAAGAGCTGAAA
67611612 AGAAGCTCA
1 AGAAGCTCA
67611621 GGAGAATTGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.43, C:0.16, G:0.24, T:0.18
Consensus pattern (21 bp):
AGAAGCTCATAAGAGCTGAAA
Done.