Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 22 of 410
Found at i:5753840 original size:18 final size:18
Alignment explanation
Indices: 5753819--5753881 Score: 96
Period size: 18 Copynumber: 3.7 Consensus size: 18
5753809 TCCATCAATT
5753819 TGAACATCATTTGAAATG
1 TGAACATCATTTGAAATG
5753837 TGAACATCATTTG-AA--
1 TGAACATCATTTGAAATG
*
5753852 TGAACATCATTTAAAATG
1 TGAACATCATTTGAAATG
5753870 TGAACATCATTT
1 TGAACATCATTT
5753882 CTCACATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
15 12 0.29
16 2 0.05
17 2 0.05
18 25 0.61
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (18 bp):
TGAACATCATTTGAAATG
Found at i:5753861 original size:33 final size:33
Alignment explanation
Indices: 5753819--5753881 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
5753809 TCCATCAATT
*
5753819 TGAACATCATTTGAAATGTGAACATCATTTGAA
1 TGAACATCATTTAAAATGTGAACATCATTTGAA
5753852 TGAACATCATTTAAAATGTGAACATCATTT
1 TGAACATCATTTAAAATGTGAACATCATTT
5753882 CTCACATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (33 bp):
TGAACATCATTTAAAATGTGAACATCATTTGAA
Found at i:5755347 original size:31 final size:31
Alignment explanation
Indices: 5755303--5755366 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
5755293 CCTTTTCATA
*
5755303 TTTCATATCTCATAACACTGGGCCGAAGCCT
1 TTTCAAATCTCATAACACTGGGCCGAAGCCT
* **
5755334 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATCTCATAACACTGGGCCGAAGCCT
5755365 TT
1 TT
5755367 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (31 bp):
TTTCAAATCTCATAACACTGGGCCGAAGCCT
Found at i:5755611 original size:24 final size:24
Alignment explanation
Indices: 5755559--5755700 Score: 191
Period size: 24 Copynumber: 6.0 Consensus size: 24
5755549 GCTTTATCAT
*
5755559 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
5755584 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
5755608 ATAACTGGGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
5755631 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
5755655 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
5755678 ATAACTGGGGCATAAGCTCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
5755701 TCACTTCCTC
Statistics
Matches: 107, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
23 43 0.40
24 52 0.49
25 12 0.11
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:5755638 original size:23 final size:23
Alignment explanation
Indices: 5755584--5755699 Score: 178
Period size: 23 Copynumber: 5.0 Consensus size: 23
5755574 GCCTCTTTTA
* *
5755584 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCC-TTTG
5755608 ATAACTGGGGCATAAGCCCTTTG
1 ATAACTGGGGCATAAGCCCTTTG
5755631 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCC-TTTG
*
5755655 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTG
*
5755678 ATAACTGGGGCATAAGCTCTTT
1 ATAACTGGGGCATAAGCCCTTT
5755700 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
23 46 0.53
24 41 0.47
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTG
Found at i:5755639 original size:47 final size:47
Alignment explanation
Indices: 5755558--5755701 Score: 209
Period size: 47 Copynumber: 3.0 Consensus size: 47
5755548 TGCTTTATCA
* *
5755558 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-C-TTTAATAACTGGGGCATAAGCCCTTTT
*
5755607 TATAACTGGGGCATAAGCCCTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
* *
5755654 GATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCTCTTTT
1 TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
5755701 T
1 T
5755702 CACTTCCTCC
Statistics
Matches: 87, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
47 69 0.79
48 5 0.06
49 13 0.15
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (47 bp):
TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:5755775 original size:20 final size:20
Alignment explanation
Indices: 5755747--5755830 Score: 150
Period size: 20 Copynumber: 4.2 Consensus size: 20
5755737 GCATTTATGA
*
5755747 ACATCTCATGTGCATATCAT
1 ACATGTCATGTGCATATCAT
5755767 ACATGTCATGTGCATATCAT
1 ACATGTCATGTGCATATCAT
*
5755787 ACATATCATGTGCATATCAT
1 ACATGTCATGTGCATATCAT
5755807 ACATGTCATGTGCATATCAT
1 ACATGTCATGTGCATATCAT
5755827 ACAT
1 ACAT
5755831 ACCATGTTTA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (20 bp):
ACATGTCATGTGCATATCAT
Found at i:5755802 original size:11 final size:11
Alignment explanation
Indices: 5755752--5755826 Score: 63
Period size: 11 Copynumber: 7.4 Consensus size: 11
5755742 TATGAACATC
5755752 TCATGTGCATA
1 TCATGTGCATA
* *
5755763 TCA--TACATG
1 TCATGTGCATA
5755772 TCATGTGCATA
1 TCATGTGCATA
*
5755783 TCA--TACATA
1 TCATGTGCATA
5755792 TCATGTGCATA
1 TCATGTGCATA
* *
5755803 TCA--TACATG
1 TCATGTGCATA
5755812 TCATGTGCATA
1 TCATGTGCATA
5755823 TCAT
1 TCAT
5755827 ACATACCATG
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 22 0.46
11 26 0.54
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:5755902 original size:25 final size:25
Alignment explanation
Indices: 5755874--5755921 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
5755864 ATGTATAAAC
* *
5755874 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
5755899 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
5755922 AATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:5757114 original size:27 final size:27
Alignment explanation
Indices: 5757084--5757169 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 27
5757074 TACCATACAG
*
5757084 GGGTATTTTGGTAGTTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAATTGA
** * * *
5757111 GGGTATTGCGGTAATTTCACAAACTAA
1 GGGTATTTTGGTAATTTTACAAATTGA
* ** *
5757138 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATTGA
5757165 GGGTA
1 GGGTA
5757170 AAACAGTAAT
Statistics
Matches: 44, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.29, C:0.07, G:0.26, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATTGA
Found at i:5757177 original size:27 final size:27
Alignment explanation
Indices: 5757147--5757379 Score: 285
Period size: 27 Copynumber: 8.6 Consensus size: 27
5757137 AGGGTATTTT
*
5757147 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
5757174 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
5757201 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
5757228 AGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
5757255 AGTAATTCTGTAAA-CTGAGGGTAAAGC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
5757282 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* **
5757309 -GATAATTTTACAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* *
5757336 AATAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
5757363 GGTAATTCTATAAATCG
1 AGTAATTCTGTAAATCG
5757380 GGAGTTCTTT
Statistics
Matches: 180, Mismatches: 18, Indels: 16
0.84 0.08 0.07
Matches are distributed among these distances:
26 4 0.02
27 173 0.96
28 3 0.02
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:5757377 original size:81 final size:81
Alignment explanation
Indices: 5757147--5757379 Score: 319
Period size: 81 Copynumber: 2.9 Consensus size: 81
5757137 AGGGTATTTT
* **
5757147 AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAA-TCAAGGGTAAAACAATAATTCTG
1 AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACT-GAGGGTAAAACGGTAATTCTG
5757211 TAAA-CTGAGGGTAAAAC
65 TAAATC-GAGGGTAAAAC
* * *
5757228 AGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAGCGGTAATTCTGT
1 AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGT
5757293 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
** * * *
5757309 -GATAATTTTACAAATCGAGGGTAAAACAATAATTCTATAAACTGAGGGTAAAACGGTAATTCTA
1 AG-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTG
5757373 TAAATCG
65 TAAATCG
5757380 GGAGTTCTTT
Statistics
Matches: 135, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
80 1 0.01
81 132 0.98
82 2 0.01
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (81 bp):
AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGT
AAATCGAGGGTAAAAC
Found at i:5760525 original size:24 final size:24
Alignment explanation
Indices: 5760473--5760614 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
5760463 GCTTTATCAT
*
5760473 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
5760498 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
5760522 ATAACTGGGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
5760545 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
5760569 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
5760592 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
5760615 TCACTTCCTC
Statistics
Matches: 108, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
23 44 0.41
24 52 0.48
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:5760552 original size:23 final size:23
Alignment explanation
Indices: 5760498--5760613 Score: 187
Period size: 23 Copynumber: 5.0 Consensus size: 23
5760488 GCCTCTTTTA
* *
5760498 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCC-TTTG
5760522 ATAACTGGGGCATAAGCCCTTTG
1 ATAACTGGGGCATAAGCCCTTTG
5760545 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCC-TTTG
*
5760569 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTG
5760592 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
5760614 TTCACTTCCT
Statistics
Matches: 88, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
23 47 0.53
24 41 0.47
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTG
Found at i:5760553 original size:47 final size:47
Alignment explanation
Indices: 5760472--5760615 Score: 218
Period size: 47 Copynumber: 3.0 Consensus size: 47
5760462 TGCTTTATCA
* *
5760472 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-C-TTTAATAACTGGGGCATAAGCCCTTTT
*
5760521 TATAACTGGGGCATAAGCCCTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
*
5760568 GATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
5760615 T
1 T
5760616 CACTTCCTCC
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
47 70 0.80
48 5 0.06
49 13 0.15
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (47 bp):
TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:5760708 original size:20 final size:20
Alignment explanation
Indices: 5760659--5760748 Score: 146
Period size: 20 Copynumber: 4.5 Consensus size: 20
5760649 GCATTTATGA
*
5760659 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
5760679 ACAT-TCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
5760698 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
5760718 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
5760738 ACATACCATGT
1 ACATATCATGT
5760749 TTATCAAAAT
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
19 19 0.29
20 47 0.71
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:5760813 original size:25 final size:25
Alignment explanation
Indices: 5760784--5760831 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
5760774 CATTATAAAC
* * *
5760784 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
5760809 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
5760832 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:5762069 original size:27 final size:27
Alignment explanation
Indices: 5762049--5762281 Score: 301
Period size: 27 Copynumber: 8.6 Consensus size: 27
5762039 AGGGTATTTT
*
5762049 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
5762076 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
5762103 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
5762130 AGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
5762157 AGTAATTCTGTAAATTGAGGGTAAAGC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
5762184 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* **
5762211 -GATAATTTTACAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
*
5762238 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
5762265 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
5762282 GGAGTACTTT
Statistics
Matches: 181, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
26 3 0.02
27 175 0.97
28 3 0.02
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:5762298 original size:81 final size:80
Alignment explanation
Indices: 5762050--5762312 Score: 296
Period size: 81 Copynumber: 3.2 Consensus size: 80
5762040 GGGTATTTTA
** * **
5762050 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAATAATTCTGTA
1 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTGTAAAT-GAGGGTAAAACGGTAATTCTGTA
*
5762115 AA-CTGAGGGTAAAACA
65 AATC-GAGGGTAAAACG
* ** * * *
5762131 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATTGAGGGTAAAGCGGTAATTCTATA
1 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTGTAAA-TGAGGGTAAAACGGTAATTCTGTA
5762196 AATCGAGGGTAAAACG
65 AATCGAGGGTAAAACG
* *
5762212 ATAATTTTACAAATCGAGGGTAAAACAGTAATTCTATAAACTGAGGGTAAAACGGTAATTCTGTA
1 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTGTAAA-TGAGGGTAAAACGGTAATTCTGTA
****
5762277 AATCG-GGAGTACTTTG
65 AATCGAGG-GTAAAACG
*
5762293 GTAATTTTACAAGTCGAGGG
1 GTAATTTTACAAATCGAGGG
5762313 CATTTCAGTA
Statistics
Matches: 156, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
80 2 0.01
81 152 0.97
82 2 0.01
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.29
Consensus pattern (80 bp):
GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTGTAAATGAGGGTAAAACGGTAATTCTGTAA
ATCGAGGGTAAAACG
Found at i:5763610 original size:21 final size:21
Alignment explanation
Indices: 5763543--5763610 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
5763533 ATAATATATA
5763543 TAAATATATATGGTCATAG-C
1 TAAATATATATGGTCATAGTC
* *
5763563 ATAAAAATAT-TGCAGTCAATA-TA
1 -TAAATATATATG--GTC-ATAGTC
5763586 TAAATATATATGGTCATAGTC
1 TAAATATATATGGTCATAGTC
5763607 TAAA
1 TAAA
5763611 CCAATGGAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
20 5 0.14
21 16 0.43
22 11 0.30
23 5 0.14
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.34
Consensus pattern (21 bp):
TAAATATATATGGTCATAGTC
Found at i:5764444 original size:26 final size:26
Alignment explanation
Indices: 5764415--5764522 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
5764405 TGGTACAAAT
5764415 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
5764441 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
5764467 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
5764493 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
5764519 TGAT
1 TGAT
5764523 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:5771461 original size:26 final size:26
Alignment explanation
Indices: 5771432--5771539 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
5771422 TGGTACAAAT
5771432 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
5771458 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
5771484 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
5771510 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
5771536 TGAT
1 TGAT
5771540 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:5777224 original size:21 final size:21
Alignment explanation
Indices: 5777195--5777236 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
5777185 TTTGCGTAAG
*
5777195 ATGTAAATTGGATTGAATTGA
1 ATGTAAATTGGATTAAATTGA
* *
5777216 ATGTGAATTGTATTAAATTGA
1 ATGTAAATTGGATTAAATTGA
5777237 GTCAAATTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.40
Consensus pattern (21 bp):
ATGTAAATTGGATTAAATTGA
Found at i:5777482 original size:27 final size:27
Alignment explanation
Indices: 5777444--5777500 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
5777434 AATCACACAT
5777444 CCGATAATGTCTGACAAGTATTAAGCC
1 CCGATAATGTCTGACAAGTATTAAGCC
5777471 CCGATAATGTCTGACAAGTATTAAGCC
1 CCGATAATGTCTGACAAGTATTAAGCC
5777498 CCG
1 CCG
5777501 TATGGATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (27 bp):
CCGATAATGTCTGACAAGTATTAAGCC
Found at i:5777756 original size:23 final size:24
Alignment explanation
Indices: 5777726--5777816 Score: 75
Period size: 25 Copynumber: 3.8 Consensus size: 24
5777716 GCGTCTCAAT
5777726 ATATGGC-TCTTCGGAGCTTCCC-A
1 ATATGGCTTCTT-GGAGCTTCCCGA
*
5777749 ATATGGCTTGCTT-GAACTTCCCGA
1 ATATGGCTT-CTTGGAGCTTCCCGA
5777773 TATATGGCTATCTTGG-GCTTCCCGA
1 -ATATGGCT-TCTTGGAGCTTCCCGA
*
5777798 TTAATGGC-TCTTCGGAGCT
1 AT-ATGGCTTCTT-GGAGCT
5777817 ACCGCATGAG
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
23 19 0.34
24 5 0.09
25 30 0.54
26 2 0.04
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (24 bp):
ATATGGCTTCTTGGAGCTTCCCGA
Found at i:5780495 original size:37 final size:38
Alignment explanation
Indices: 5780414--5780547 Score: 135
Period size: 37 Copynumber: 3.4 Consensus size: 38
5780404 ACCAATTTGG
* * * *
5780414 CACCCAGTGCCTCATCGGATAATTCAAAGTAGTAAATTGA
1 CACCCAGTGTCTCATCGAATAAATC--AGAAGTAAATTGA
* *
5780454 CACCCAGTGTCTCATCGATTAAA-CAGAAGTAAATTGG
1 CACCCAGTGTCTCATCGAATAAATCAGAAGTAAATTGA
* * *
5780491 CACCCAGTGCCTTATCGAATAAATCCGAAGTGATAGATTGA
1 CACCCAGTGTCTCATCGAATAAATCAGAAGT-A-A-ATTGA
5780532 CACCCAGTGTCTCATC
1 CACCCAGTGTCTCATC
5780548 AACTCGAAGT
Statistics
Matches: 77, Mismatches: 13, Indels: 7
0.79 0.13 0.07
Matches are distributed among these distances:
37 31 0.40
38 6 0.08
39 2 0.03
40 20 0.26
41 18 0.23
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (38 bp):
CACCCAGTGTCTCATCGAATAAATCAGAAGTAAATTGA
Found at i:5786352 original size:22 final size:22
Alignment explanation
Indices: 5786314--5786361 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
5786304 CGTAAATTTT
5786314 TAAATTCAAAAAGTAAAA-AGA
1 TAAATTCAAAAAGTAAAATAGA
*
5786335 CTAAATTTCAAATA-TAAAATAGA
1 -TAAA-TTCAAAAAGTAAAATAGA
5786358 TAAA
1 TAAA
5786362 AGAATTTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.25
Consensus pattern (22 bp):
TAAATTCAAAAAGTAAAATAGA
Found at i:5787451 original size:55 final size:55
Alignment explanation
Indices: 5787357--5787480 Score: 167
Period size: 57 Copynumber: 2.2 Consensus size: 55
5787347 ATGGAAAAAA
* *
5787357 ATTAGAAGGCCAGCACCTAAAAAAATTTGAATTTTTTTTTTGTACCTGGTGCAAGCC
1 ATTAGAAGGCCAACACCTAAAAAAAATTGAA-TTTTTTTTTGTA-CTGGTGCAAGCC
* * * **
5787414 ATTAGAAAGCCAATACCTAAAAAAAATTGAATTTTTTTTTGTATTGGTGCCGGCC
1 ATTAGAAGGCCAACACCTAAAAAAAATTGAATTTTTTTTTGTACTGGTGCAAGCC
5787469 ATTAGAAGGCCA
1 ATTAGAAGGCCA
5787481 GAACCAAATT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
55 20 0.34
56 12 0.20
57 27 0.46
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (55 bp):
ATTAGAAGGCCAACACCTAAAAAAAATTGAATTTTTTTTTGTACTGGTGCAAGCC
Found at i:5790636 original size:26 final size:26
Alignment explanation
Indices: 5790598--5790655 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
5790588 CATGAAATTC
5790598 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
5790624 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
5790650 TTATCA
1 TTATCA
5790656 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:5791539 original size:2 final size:2
Alignment explanation
Indices: 5791532--5791571 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
5791522 ATTTTTATTT
*
5791532 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5791572 CATTCTTATA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:5792115 original size:22 final size:22
Alignment explanation
Indices: 5792107--5792151 Score: 69
Period size: 19 Copynumber: 2.2 Consensus size: 22
5792097 TTAAAATTTT
5792107 AAAATAAAAAAATTTAAAAATA
1 AAAATAAAAAAATTTAAAAATA
5792129 AAAAT-AAAAAA--TAAAAATA
1 AAAATAAAAAAATTTAAAAATA
5792148 AAAA
1 AAAA
5792152 ACTTAAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 12 0.52
21 6 0.26
22 5 0.22
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (22 bp):
AAAATAAAAAAATTTAAAAATA
Found at i:5792117 original size:7 final size:7
Alignment explanation
Indices: 5792107--5792152 Score: 51
Period size: 6 Copynumber: 6.6 Consensus size: 7
5792097 TTAAAATTTT
5792107 AAAATAAA
1 AAAAT-AA
*
5792115 AAAATTTA
1 AAAA-TAA
5792123 AAAAT-A
1 AAAATAA
5792129 AAAATAA
1 AAAATAA
5792136 AAAAT-A
1 AAAATAA
5792142 AAAATAA
1 AAAATAA
5792149 AAAA
1 AAAA
5792153 CTTAAATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
6 12 0.35
7 12 0.35
8 9 0.26
9 1 0.03
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (7 bp):
AAAATAA
Found at i:5792118 original size:16 final size:16
Alignment explanation
Indices: 5792066--5792132 Score: 64
Period size: 16 Copynumber: 4.0 Consensus size: 16
5792056 TTTATATGTT
*
5792066 AATTTAAAAATTATAAA
1 AATTTAAAAA-TAAAAA
*
5792083 AATCTTCAAAAA-AATTAA
1 AAT-TT-AAAAATAA-AAA
*
5792101 AATTTTAAAATAAAAA
1 AATTTAAAAATAAAAA
5792117 AATTTAAAAATAAAAA
1 AATTTAAAAATAAAAA
5792133 TAAAAAATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
16 21 0.51
17 8 0.20
18 7 0.17
19 5 0.12
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (16 bp):
AATTTAAAAATAAAAA
Found at i:5792130 original size:6 final size:6
Alignment explanation
Indices: 5792121--5792151 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
5792111 TAAAAAAATT
5792121 TAAAAA TAAAAA TAAAAAA TAAAAA TAAAAA
1 TAAAAA TAAAAA T-AAAAA TAAAAA TAAAAA
5792152 ACTTAAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
TAAAAA
Found at i:5792160 original size:13 final size:13
Alignment explanation
Indices: 5792122--5792152 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
5792112 AAAAAAATTT
5792122 AAAAATAAAAATA
1 AAAAATAAAAATA
5792135 AAAAATAAAAATA
1 AAAAATAAAAATA
5792148 AAAAA
1 AAAAA
5792153 CTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (13 bp):
AAAAATAAAAATA
Found at i:5792167 original size:7 final size:7
Alignment explanation
Indices: 5792157--5792184 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
5792147 AAAAAACTTA
5792157 AATATTT
1 AATATTT
5792164 AATATTT
1 AATATTT
5792171 AATATTT
1 AATATTT
5792178 AATATTT
1 AATATTT
5792185 TAGTCCATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
AATATTT
Found at i:5792295 original size:10 final size:9
Alignment explanation
Indices: 5792271--5792298 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
5792261 AAATTTTGAA
5792271 AGAAAAAAT
1 AGAAAAAAT
5792280 AGAAAAAAT
1 AGAAAAAAT
5792289 AGAAAAAAT
1 AGAAAAAAT
5792298 A
1 A
5792299 TGTTAGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.11
Consensus pattern (9 bp):
AGAAAAAAT
Found at i:5794735 original size:40 final size:40
Alignment explanation
Indices: 5794642--5794833 Score: 167
Period size: 40 Copynumber: 4.8 Consensus size: 40
5794632 GGATATAACG
* ** *
5794642 ACTCGCTCAAATGCCTTCGGGACGAAGCCC-GATTATAGTG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* * *
5794682 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
5794722 ACTTGCACAAATGCCTTCAGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * * * * *
5794761 ACTCGCACGAATACCTTC-GGATCCTAGTCCTGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
*
5794801 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
5794834 CATCATTCGA
Statistics
Matches: 119, Mismatches: 28, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 74 0.62
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:5798371 original size:15 final size:16
Alignment explanation
Indices: 5798351--5798381 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
5798341 GTTTTTATCT
5798351 TATATATGAT-TAAAA
1 TATATATGATCTAAAA
5798366 TATATATGATCTAAAA
1 TATATATGATCTAAAA
5798382 GCAAGAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (16 bp):
TATATATGATCTAAAA
Found at i:5799828 original size:43 final size:43
Alignment explanation
Indices: 5799763--5800017 Score: 268
Period size: 43 Copynumber: 6.0 Consensus size: 43
5799753 GATCATTATT
* * * * *
5799763 TTTAGCGGCGTTTGTGAGAAAAGTGTCGCTAAAGGTTATGATC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
5799806 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
5799849 TTTAGCGGCGTTTGCT-AAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTG-TGAAAAAAGCGCCGCTAAAGGTCATGGTC
* * * * ** * *
5799892 TTTAGTGGCATTTGCG-AAAAAGCGCCACTAAAACTCTTAGT-
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
*** * *
5799933 TTTAAGCGGCGTTT-TTTTAAAAGCGCCGCTAAAAGTCCTGGTC
1 TTT-AGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
* *
5799976 TTTAGCGGTGTTT-TCGAAAAATGCGCCGCTAAAGGTCATGGT
1 TTTAGCGGCGTTTGT-GAAAAAAGCGCCGCTAAAGGTCATGGT
5800018 TAGTGGCCTT
Statistics
Matches: 177, Mismatches: 29, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
41 3 0.02
42 58 0.33
43 115 0.65
44 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:5804453 original size:15 final size:15
Alignment explanation
Indices: 5804435--5804474 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
5804425 TTTTCAATTT
5804435 TTTTCAAATTTAATA
1 TTTTCAAATTTAATA
* *
5804450 TTTT-AAATTAAATC
1 TTTTCAAATTTAATA
5804464 TTTTCAAATTT
1 TTTTCAAATTT
5804475 CGAACATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTTCAAATTTAATA
Found at i:5818214 original size:35 final size:35
Alignment explanation
Indices: 5818120--5818450 Score: 389
Period size: 35 Copynumber: 9.5 Consensus size: 35
5818110 GGAAAAGTGA
*
5818120 GAAATGTAGGTATGGTA-TAACCATATCGAGTTGT
1 GAAATGTAGGTATGGTATTAACCATACCGAGTTGT
* ** *** * * *
5818154 GAAATGTAAGTATGGCGTCGTCCATACTGAGCTAT
1 GAAATGTAGGTATGGTATTAACCATACCGAGTTGT
* *
5818189 GATACGTAGGTATGGTATTAACCATACCGAGTTGT
1 GAAATGTAGGTATGGTATTAACCATACCGAGTTGT
*
5818224 GAAACGTAGGTATGGTATTAACCATACCGAGTTGT
1 GAAATGTAGGTATGGTATTAACCATACCGAGTTGT
* *
5818259 GAAAGGTAGGTATGGTATTAACCATACCGAGATGT
1 GAAATGTAGGTATGGTATTAACCATACCGAGTTGT
* *
5818294 GAAACGTAGGTATGGTA--ATCCATACCGAGTTGT
1 GAAATGTAGGTATGGTATTAACCATACCGAGTTGT
* * *
5818327 GAAATGTAGGTATGGTATCATCCATACCGAGTTGA
1 GAAATGTAGGTATGGTATTAACCATACCGAGTTGT
* * **
5818362 GAAATGTAGGTATGGTATTATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATTAACCATACCGAGTTGT
* ** *
5818397 GAAATGTAGGTATGGCATTTCCCATACTGAGTTGT
1 GAAATGTAGGTATGGTATTAACCATACCGAGTTGT
5818432 GAAATGTAGGTATGGTATT
1 GAAATGTAGGTATGGTATT
5818451 TCAATGAGAA
Statistics
Matches: 256, Mismatches: 38, Indels: 5
0.86 0.13 0.02
Matches are distributed among these distances:
33 30 0.12
34 14 0.05
35 212 0.83
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTAACCATACCGAGTTGT
Found at i:5818387 original size:138 final size:138
Alignment explanation
Indices: 5818119--5818448 Score: 419
Period size: 138 Copynumber: 2.4 Consensus size: 138
5818109 TGGAAAAGTG
* * ** *
5818119 AGAAATGTAGGTATGGTA-TAACCATATCGAGTTGTGAAATGTAAGTATGGCGTCGTCCATACTG
1 AGAAATGTAGGTATGGTATTAACCATACCGAGTTGTGAAATGTAGGTAT-G-GTAATCCATACCG
* * *
5818183 AGCTATGATACGTAGGTATGGTATTAACCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCA
64 AGCTATGAAACGTAGGTATGGTATCAACCATACCGAGTTGAGAAACGTAGGTATGGTATTAACCA
*
5818248 TACCGAGTTG
129 TACCGAGTTA
* * * *
5818258 TGAAAGGTAGGTATGGTATTAACCATACCGAGATGTGAAACGTAGGTATGGTAATCCATACCGAG
1 AGAAATGTAGGTATGGTATTAACCATACCGAGTTGTGAAATGTAGGTATGGTAATCCATACCGAG
* * * * * *
5818323 TTGTGAAATGTAGGTATGGTATCATCCATACCGAGTTGAGAAATGTAGGTATGGTATTATCCATA
66 CTATGAAACGTAGGTATGGTATCAACCATACCGAGTTGAGAAACGTAGGTATGGTATTAACCATA
*
5818388 CTGAGTTA
131 CCGAGTTA
* ** *
5818396 AGAAATGTAGGTATGGCATTTCCCATACTGAGTTGTGAAATGTAGGTATGGTA
1 AGAAATGTAGGTATGGTATTAACCATACCGAGTTGTGAAATGTAGGTATGGTA
5818449 TTTCAATGAG
Statistics
Matches: 162, Mismatches: 28, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
138 119 0.73
139 17 0.10
140 26 0.16
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.30
Consensus pattern (138 bp):
AGAAATGTAGGTATGGTATTAACCATACCGAGTTGTGAAATGTAGGTATGGTAATCCATACCGAG
CTATGAAACGTAGGTATGGTATCAACCATACCGAGTTGAGAAACGTAGGTATGGTATTAACCATA
CCGAGTTA
Found at i:5818435 original size:173 final size:174
Alignment explanation
Indices: 5818120--5818450 Score: 450
Period size: 173 Copynumber: 1.9 Consensus size: 174
5818110 GGAAAAGTGA
* * * * *
5818120 GAAATGTAGGTATGGTATAACCATATCGAGTTGTGAAATGTAAGTATGGCGTCGTCCATACTGAG
1 GAAACGTAGGTATGGTATAACCATACCGAGTTGTGAAATGTAAGTATGGCATCATCCATACCGAG
* ** *
5818185 CTATGATACGTAGGTATGGTATTAACCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATA
66 CTATGAAACGTAGGTATGGTATTAACCATACCGAGTTAAGAAACGTAGGTATGGCATTAACCATA
5818250 CCGAGTTGTGAAAGGTAGGTATGGTATTAACCATACCGAGATGT
131 CCGAGTTGTGAAAGGTAGGTATGGTATTAACCATACCGAGATGT
* * *
5818294 GAAACGTAGGTATGGTA-ATCCATACCGAGTTGTGAAATGTAGGTATGGTATCATCCATACCGAG
1 GAAACGTAGGTATGGTATAACCATACCGAGTTGTGAAATGTAAGTATGGCATCATCCATACCGAG
* * * * * **
5818358 TTGA-GAAATGTAGGTATGGTATTATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCCCAT
66 CT-ATGAAACGTAGGTATGGTATTAACCATACCGAGTTAAGAAACGTAGGTATGGCATTAACCAT
* *
5818422 ACTGAGTTGTGAAATGTAGGTATGGTATT
130 ACCGAGTTGTGAAAGGTAGGTATGGTATT
5818451 TCAATGAGAA
Statistics
Matches: 135, Mismatches: 21, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
173 118 0.87
174 17 0.13
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (174 bp):
GAAACGTAGGTATGGTATAACCATACCGAGTTGTGAAATGTAAGTATGGCATCATCCATACCGAG
CTATGAAACGTAGGTATGGTATTAACCATACCGAGTTAAGAAACGTAGGTATGGCATTAACCATA
CCGAGTTGTGAAAGGTAGGTATGGTATTAACCATACCGAGATGT
Found at i:5825557 original size:13 final size:13
Alignment explanation
Indices: 5825541--5825581 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
5825531 TATTTTTCTG
5825541 AATCACTTTTGAA
1 AATCACTTTTGAA
5825554 AATCACTTTTGAA
1 AATCACTTTTGAA
*
5825567 AAGT-ACTTCTGAA
1 AA-TCACTTTTGAA
5825580 AA
1 AA
5825582 AGAGAAGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 25 0.96
14 1 0.04
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.34
Consensus pattern (13 bp):
AATCACTTTTGAA
Found at i:5827655 original size:24 final size:24
Alignment explanation
Indices: 5827626--5827672 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
5827616 TTTTCAGTAT
5827626 TAAGAAAATCATTCATTAAAAATA
1 TAAGAAAATCATTCATTAAAAATA
5827650 TAAGAAAATCATTCATTAAAAAT
1 TAAGAAAATCATTCATTAAAAAT
5827673 CATATATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.57, C:0.09, G:0.04, T:0.30
Consensus pattern (24 bp):
TAAGAAAATCATTCATTAAAAATA
Found at i:5831828 original size:17 final size:17
Alignment explanation
Indices: 5831806--5831843 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
5831796 AGGCCGTGTA
*
5831806 GGCCACAC-GGACATGTG
1 GGCCACACAGG-CATCTG
5831823 GGCCACACAGGCATCTG
1 GGCCACACAGGCATCTG
5831840 GGCC
1 GGCC
5831844 CAAAATTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.21, C:0.34, G:0.34, T:0.11
Consensus pattern (17 bp):
GGCCACACAGGCATCTG
Found at i:5832302 original size:6 final size:6
Alignment explanation
Indices: 5832291--5832324 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
5832281 ATAATCTAAG
*
5832291 TCTGAA TCTGAA TCTGAA TTTGAA TCTGAA TCTG
1 TCTGAA TCTGAA TCTGAA TCTGAA TCTGAA TCTG
5832325 TATGTGACTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (6 bp):
TCTGAA
Found at i:5834443 original size:46 final size:46
Alignment explanation
Indices: 5834429--5834608 Score: 306
Period size: 46 Copynumber: 3.9 Consensus size: 46
5834419 TGTCATGTTT
** * * *
5834429 CCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTG
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTG
*
5834475 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGATG
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTG
5834521 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTG
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTG
5834567 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
5834609 AGAGCACACT
Statistics
Matches: 127, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 127 1.00
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.38
Consensus pattern (46 bp):
CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTG
Found at i:5836751 original size:11 final size:11
Alignment explanation
Indices: 5836735--5836782 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
5836725 CTTTATATAC
5836735 TAATAAAATAA
1 TAATAAAATAA
*
5836746 TAATAAAATATCT
1 TAATAAAATA--A
* *
5836759 TATTAAAATAT
1 TAATAAAATAA
5836770 TAATAAAATAA
1 TAATAAAATAA
5836781 TA
1 TA
5836783 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:5837378 original size:41 final size:41
Alignment explanation
Indices: 5837323--5837672 Score: 515
Period size: 41 Copynumber: 8.5 Consensus size: 41
5837313 TCAGTGATAT
5837323 TCAGGCTTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA
1 TCAGGC-TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA
*
5837365 TCAGGCTTATTGCCTAGTAGGCTTTGTGCCGGTGTATTATA
1 TCAGGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA
* * * *
5837406 TCAGGCTTATTGCCTAGCAGGCTTTGTGCTGATGTTTTAAA
1 TCAGGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA
*
5837447 TCAGGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAA
1 TCAGGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA
* *
5837488 TCAGGCTTATTGCCTAGCAGGCTTTGTTCCGGTGTATTAAA
1 TCAGGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA
*
5837529 TCAGGCTTATTACCTAGCAGGCTTTGTGCCGGTGTATTATA
1 TCAGGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA
* *
5837570 TCAGGCTTATTGCCTAGCAGGCTTTATATGCCGATGTATTATA
1 TCAGGCTTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATA
* * *
5837613 TCAAGCTTATTGCCTAGCAGGCTCTGTGCCGATGTATTATA
1 TCAGGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA
5837654 -CTAGGCTT-TATGCCTAGCA
1 TC-AGGCTTAT-TGCCTAGCA
5837673 AATTTTATGT
Statistics
Matches: 284, Mismatches: 20, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
40 2 0.01
41 237 0.83
42 9 0.03
43 36 0.13
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (41 bp):
TCAGGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA
Found at i:5844204 original size:41 final size:41
Alignment explanation
Indices: 5844158--5844459 Score: 428
Period size: 41 Copynumber: 7.3 Consensus size: 41
5844148 TATTCGGGCT
5844158 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* * *
5844199 TTATTGCCTAGCAAGCTTTGTGCCGGTGTTTTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* *
5844240 TTATTGCCTAGCAGGCTTTGTGCCGCTGTATTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
5844281 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* * *
5844322 TTGTTGCCTAGCAGGCTTTGTGCCAGTGTATTATATCAGTC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* *
5844363 TTATTGCCTAGCAGGCTTTATATACCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGC
* * *
5844406 TTATTGCCTAGCAGGCTCTATGCCGATGTATTATA-CTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGC
5844447 TT-TATGCCTAGCA
1 TTAT-TGCCTAGCA
5844460 AATTTTATGT
Statistics
Matches: 238, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
40 2 0.01
41 198 0.83
42 3 0.01
43 35 0.15
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.36
Consensus pattern (41 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
Found at i:5845700 original size:27 final size:27
Alignment explanation
Indices: 5845589--5845703 Score: 128
Period size: 27 Copynumber: 4.3 Consensus size: 27
5845579 GGAGGAAGCG
*
5845589 TCTGGTGGCTATGCCACATATATCTGT
1 TCTGGTGGCTATGCCACATATATCTAT
* *
5845616 CCTGGTGGCTATGCTACA-ATTATCTGA-
1 TCTGGTGGCTATGCCACATA-TATCT-AT
* *
5845643 TCTAGTGGCTCTGCCACATATATCTAT
1 TCTGGTGGCTATGCCACATATATCTAT
*
5845670 TCTGGTGGCTCTGCCACA-ATATCTAT
1 TCTGGTGGCTATGCCACATATATCTAT
5845696 ATCTGGTG
1 -TCTGGTG
5845704 ACTTCATCAA
Statistics
Matches: 75, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
26 10 0.13
27 64 0.85
28 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTATGCCACATATATCTAT
Found at i:5849712 original size:27 final size:27
Alignment explanation
Indices: 5849682--5849768 Score: 133
Period size: 27 Copynumber: 3.2 Consensus size: 27
5849672 GTGATGAAGT
5849682 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
5849709 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
5849736 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
5849763 CACCAG
1 CACCAG
5849769 GACGCTTCCT
Statistics
Matches: 56, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
26 8 0.14
27 46 0.82
28 2 0.04
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.17
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:5852699 original size:21 final size:22
Alignment explanation
Indices: 5852658--5852699 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
5852648 ATCAAATTTG
*
5852658 GTATAATGTGTGCTGGATGATT
1 GTATAATATGTGCTGGATGATT
*
5852680 GTATAATATG-GCTTGATGAT
1 GTATAATATGTGCTGGATGAT
5852700 GATGTAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.26, C:0.05, G:0.29, T:0.40
Consensus pattern (22 bp):
GTATAATATGTGCTGGATGATT
Found at i:5855818 original size:11 final size:11
Alignment explanation
Indices: 5855804--5855844 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
5855794 TATTTTCTCT
5855804 CTATTTTGCTA
1 CTATTTTGCTA
*
5855815 CTATTTTACTA
1 CTATTTTGCTA
* *
5855826 TTATGTTGCTA
1 CTATTTTGCTA
5855837 CTATTTTG
1 CTATTTTG
5855845 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:5855930 original size:30 final size:31
Alignment explanation
Indices: 5855881--5855944 Score: 96
Period size: 30 Copynumber: 2.1 Consensus size: 31
5855871 ACTTATTTTA
*
5855881 TTGTTAATTTTTTTTATTATTTTA-AAGACAT
1 TTGTTAATTTTTGTTATTATTTTAGAA-ACAT
5855912 TTGTTAA-TTTTGTTATTATTTTAGAAACAT
1 TTGTTAATTTTTGTTATTATTTTAGAAACAT
5855942 TTG
1 TTG
5855945 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
30 22 0.71
31 9 0.29
ACGTcount: A:0.28, C:0.03, G:0.09, T:0.59
Consensus pattern (31 bp):
TTGTTAATTTTTGTTATTATTTTAGAAACAT
Found at i:5856048 original size:18 final size:18
Alignment explanation
Indices: 5856027--5856065 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
5856017 GAAATATTTA
5856027 TTTGATGATTT-TAGTATT
1 TTTGATGATTTATA-TATT
*
5856045 TTTGATGGTTTATATATT
1 TTTGATGATTTATATATT
5856063 TTT
1 TTT
5856066 TAAAATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.21, C:0.00, G:0.15, T:0.64
Consensus pattern (18 bp):
TTTGATGATTTATATATT
Found at i:5856088 original size:12 final size:12
Alignment explanation
Indices: 5856067--5856100 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
5856057 TATATTTTTT
*
5856067 AAAATTATATAA
1 AAAATAATATAA
5856079 AAAATAATATAA
1 AAAATAATATAA
*
5856091 AAATTAATAT
1 AAAATAATAT
5856101 GGCCGGTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:5868090 original size:20 final size:18
Alignment explanation
Indices: 5868043--5868146 Score: 60
Period size: 20 Copynumber: 5.8 Consensus size: 18
5868033 CAAGATAAAC
5868043 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
5868060 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
*
5868080 ATTAAATTAATA--AAAT
1 ATTAAATTAATATTTAAT
5868096 ATTAAGA-TAAGTA-TTAA-
1 ATTAA-ATTAA-TATTTAAT
* *
5868113 ATTAAATTTAATAATAAACT
1 ATTAAA-TTAATATTTAA-T
*
5868133 ATTAAAATAATATT
1 ATTAAATTAATATT
5868147 ATTTTTGGAA
Statistics
Matches: 69, Mismatches: 5, Indels: 24
0.70 0.05 0.24
Matches are distributed among these distances:
16 12 0.17
17 18 0.26
18 9 0.13
19 9 0.13
20 21 0.30
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:5868531 original size:26 final size:25
Alignment explanation
Indices: 5868502--5868611 Score: 148
Period size: 26 Copynumber: 4.2 Consensus size: 25
5868492 TGGTACAAAT
5868502 TGATAATAGGTTAGGTAAATGTTCAA
1 TGATAATAGGTTAGGTAAATGTTC-A
*
5868528 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
*
5868554 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
* *
5868580 TGATAATGGGTTAGGTAAATGTTTTA
1 TGATAATAGGTTAGGTAAATG-TTCA
5868606 TGATAA
1 TGATAA
5868612 GAATTTCATG
Statistics
Matches: 78, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
26 75 0.96
27 3 0.04
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.37
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:5868868 original size:27 final size:27
Alignment explanation
Indices: 5868827--5868996 Score: 259
Period size: 27 Copynumber: 6.3 Consensus size: 27
5868817 GAGGAAGCGT
*
5868827 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
5868854 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
5868881 TCTGGTGGCTCTGCCACATATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
5868908 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
5868935 TCTGGTGGCGCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
** *
5868962 TCTGGTGGCTCTGCCATGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
5868990 TCTGGTG
1 TCTGGTG
5868997 ACTTTGTCAC
Statistics
Matches: 130, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
27 123 0.95
28 7 0.05
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.33
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:5868909 original size:54 final size:54
Alignment explanation
Indices: 5868827--5869020 Score: 273
Period size: 54 Copynumber: 3.6 Consensus size: 54
5868817 GAGGAAGCGT
* *
5868827 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACATATATCTGATCTGGTGGCTCTGCCACAAATATCTGA
5868881 TCTGGTGGCTCTGCCACATATATCTGATCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACATATATCTGATCTGGTGGCTCTGCCACAAATATCTGA
* * ** *
5868935 TCTGGTGGCGCTGCCACATATATCTGTTCTGGTGGCTCTGCCATGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
5868990 TCTGGTGACTTTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGATCTGG
5869021 CAGCCATGCT
Statistics
Matches: 128, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
54 112 0.88
55 16 0.12
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
TCTGGTGGCTCTGCCACATATATCTGATCTGGTGGCTCTGCCACAAATATCTGA
Found at i:5869010 original size:27 final size:26
Alignment explanation
Indices: 5868827--5869020 Score: 226
Period size: 27 Copynumber: 7.2 Consensus size: 26
5868817 GAGGAAGCGT
* *
5868827 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCAC-ATTATCTGA
*
5868854 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCAC-ATTATCTGA
5868881 TCTGGTGGCTCTGCCACATATATCTGA
1 TCTGGTGGCTCTGCCACAT-TATCTGA
*
5868908 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCAC-ATTATCTGA
* *
5868935 TCTGGTGGCGCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAT-TATCTGA
*
5868962 TCTGGTGGCTCTGCCATGATTATCTGTA
1 TCTGGTGGCTCTGCCA-CATTATCTG-A
* * * *
5868990 TCTGGTGACTTTGTCACATTATCTGT
1 TCTGGTGGCTCTGCCACATTATCTGA
5869016 TCTGG
1 TCTGG
5869021 CAGCCATGCT
Statistics
Matches: 148, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
26 7 0.05
27 125 0.84
28 16 0.11
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
TCTGGTGGCTCTGCCACATTATCTGA
Found at i:5873007 original size:26 final size:25
Alignment explanation
Indices: 5872978--5873087 Score: 148
Period size: 26 Copynumber: 4.2 Consensus size: 25
5872968 TGGTACAAAT
5872978 TGATAATAGGTTAGGTAAATGTTCAA
1 TGATAATAGGTTAGGTAAATGTTC-A
*
5873004 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
*
5873030 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
* *
5873056 TGATAATGGGTTAGGTAAATGTTTTA
1 TGATAATAGGTTAGGTAAATG-TTCA
5873082 TGATAA
1 TGATAA
5873088 GAATTTCATG
Statistics
Matches: 78, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
26 75 0.96
27 3 0.04
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.37
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:5874285 original size:16 final size:15
Alignment explanation
Indices: 5874259--5874288 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
5874249 ACTAGATTGG
5874259 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
5874274 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
5874289 TCAGTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.23, G:0.20, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:5874745 original size:27 final size:27
Alignment explanation
Indices: 5874704--5874924 Score: 300
Period size: 27 Copynumber: 8.2 Consensus size: 27
5874694 GAGGAAGCGT
* *
5874704 TCTGGTGGCTATGCCACAAATATCTTA
1 TCTGGTGGCTCTGCCACAAATATCTGA
5874731 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
5874758 TCTGATGGCTCTGCCACATATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
5874785 TCTGGTGGCTCTGCCACATATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
5874812 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
5874839 TCTGGTGGCTCTACCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
5874866 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
5874894 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
5874920 TCTGG
1 TCTGG
5874925 CAGCCATGCG
Statistics
Matches: 176, Mismatches: 17, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
26 5 0.03
27 156 0.89
28 15 0.09
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:5877387 original size:25 final size:27
Alignment explanation
Indices: 5877350--5877402 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
5877340 TCAAACATGC
5877350 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
5877376 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
5877402 A
1 A
5877403 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:5878914 original size:26 final size:26
Alignment explanation
Indices: 5878883--5878990 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
5878873 TGAAATTCCC
*
5878883 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
5878909 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
5878935 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
5878961 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
5878987 ATCA
1 ATCA
5878991 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:5880662 original size:19 final size:22
Alignment explanation
Indices: 5880638--5880677 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
5880628 TCAGAGTCCT
5880638 TCGG-AACACA-AA-TTCTTCC
1 TCGGAAACACAGAACTTCTTCC
5880657 TCGGAAACACAGAACTTCTTC
1 TCGGAAACACAGAACTTCTTC
5880678 GCCATTTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 6 0.33
21 2 0.11
22 6 0.33
ACGTcount: A:0.33, C:0.30, G:0.12, T:0.25
Consensus pattern (22 bp):
TCGGAAACACAGAACTTCTTCC
Found at i:5885971 original size:26 final size:26
Alignment explanation
Indices: 5885940--5886047 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
5885930 TGAAATTCCC
*
5885940 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
5885966 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
5885992 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
5886018 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
5886044 ATCA
1 ATCA
5886048 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:5888294 original size:43 final size:43
Alignment explanation
Indices: 5888231--5888348 Score: 175
Period size: 43 Copynumber: 2.7 Consensus size: 43
5888221 TTCAACGAAC
* *
5888231 TCGCACACTTAGTGCTAATTAATTAATCGAAGCTATAATTGCA
1 TCGCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGCA
* *
5888274 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGCA
5888317 TCGCACACTTAGTGCC-ATTACATTAAACCGAA
1 TCGCACACTTAGTGCCAATTA-ATT-AACCGAA
5888349 CTTATATCGG
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
42 4 0.06
43 58 0.85
44 6 0.09
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGCA
Found at i:5892016 original size:16 final size:16
Alignment explanation
Indices: 5891995--5892025 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
5891985 CTATGCATAC
*
5891995 AAAATATAAAAGACAA
1 AAAATACAAAAGACAA
5892011 AAAATACAAAAGACA
1 AAAATACAAAAGACA
5892026 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.10, G:0.06, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAA
Found at i:5894576 original size:12 final size:12
Alignment explanation
Indices: 5894559--5894583 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
5894549 CACAACATGC
5894559 ATGGTATTAAAA
1 ATGGTATTAAAA
5894571 ATGGTATTAAAA
1 ATGGTATTAAAA
5894583 A
1 A
5894584 AACATAATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (12 bp):
ATGGTATTAAAA
Found at i:5894754 original size:3 final size:3
Alignment explanation
Indices: 5894748--5894776 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
5894738 ACACTACTAT
5894748 ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
5894777 GAAATACAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:5895869 original size:22 final size:22
Alignment explanation
Indices: 5895827--5895869 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
5895817 TTAACAATTA
*
5895827 TAAAAATAAAATAAATCAAAAT
1 TAAAAATAAAATAAATAAAAAT
*
5895849 TAAAATTAAAA-AATATAAAAA
1 TAAAAATAAAATAA-ATAAAAA
5895870 GTTTATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (22 bp):
TAAAAATAAAATAAATAAAAAT
Found at i:5898768 original size:18 final size:16
Alignment explanation
Indices: 5898732--5898771 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
5898722 TAGTACATGA
5898732 AAATTAAAAAATAATT
1 AAATTAAAAAATAATT
*
5898748 AAATTAAATAATATTATT
1 AAATTAAA-AA-ATAATT
5898766 AAATTA
1 AAATTA
5898772 GGGAGTTGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.38
17 2 0.10
18 11 0.52
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATTAAAAAATAATT
Found at i:5902227 original size:3 final size:3
Alignment explanation
Indices: 5902219--5902384 Score: 169
Period size: 3 Copynumber: 54.3 Consensus size: 3
5902209 GTTTAATAGT
5902219 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* **
5902267 ATA ATA ATA ATA ATA A-A ATGA AGA ATA ACG ATA ATA CATTA ATA ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA -A-TA ATA ATA
* * **
5902314 ATA ACA ACA ATA AT- ATAA ATA ATA A-A ATA ATA ATA ATA GCA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
5902358 ATA GATTA ATTA ATA AT- GTA ATA ATA A
1 ATA -A-TA A-TA ATA ATA ATA ATA ATA A
5902385 GTAAATAAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 20
0.80 0.08 0.12
Matches are distributed among these distances:
2 7 0.05
3 116 0.83
4 12 0.09
5 4 0.03
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:5904285 original size:44 final size:43
Alignment explanation
Indices: 5904233--5904454 Score: 124
Period size: 44 Copynumber: 5.0 Consensus size: 43
5904223 GAGAAAAGAT
*
5904233 TTGTAGCTTCGATCTACTCCGATAGAACTTCAAGGAGATAAAAA
1 TTGTAGCTTCGATCTACTCCAAT-GAACTTCAAGGAGATAAAAA
* *** * * * * *
5904277 TTGTAGCTTCGAGCCGTTCCAATGCCATTTCAGGGAGA-AGAGAT
1 TTGTAGCTTCGATCTACTCCAATG-AACTTCAAGGAGATA-AAAA
* * * **
5904321 TTTTAGCTTCAATCTACTCCACTGGAACTTCAAGGAGATACGAA
1 TTGTAGCTTCGATCTACTCCAAT-GAACTTCAAGGAGATAAAAA
* * * * * * *
5904365 TTGTGGCTTCGAGCCACTCCAATGCCATTTCAGGGAGA-AGAAAT
1 TTGTAGCTTCGATCTACTCCAATG-AACTTCAAGGAGATA-AAAA
* ** * *
5904409 TTGTAGTTTCGATCTACTCCGCTGGAACTTTAAAGAGATAAAAA
1 TTGTAGCTTCGATCTACTCCAAT-GAACTTCAAGGAGATAAAAA
5904453 TT
1 TT
5904455 ATTGATTTCA
Statistics
Matches: 124, Mismatches: 46, Indels: 16
0.67 0.25 0.09
Matches are distributed among these distances:
43 4 0.03
44 116 0.94
45 4 0.03
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (43 bp):
TTGTAGCTTCGATCTACTCCAATGAACTTCAAGGAGATAAAAA
Found at i:5904321 original size:88 final size:88
Alignment explanation
Indices: 5904205--5904454 Score: 349
Period size: 88 Copynumber: 2.8 Consensus size: 88
5904195 ACTTCAATTG
* * *
5904205 CTCCAATGCCATTTTAGGGAGAAAAGATTTGTAGCTTCGATCTACTCCGATAGAACTTCAAGGAG
1 CTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGATGGAACTTCAAGGAG
*
5904270 ATAAAAATTGTAGCTTCGAGCCG
66 ATAAAAATTGTAGCTTCGAGCCA
* * *
5904293 TTCCAATGCCATTTCAGGGAGAAGAGATTTTTAGCTTCAATCTACTCC-ACTGGAACTTCAAGGA
1 CTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGA-TGGAACTTCAAGGA
** *
5904357 GATACGAATTGTGGCTTCGAGCCA
65 GATAAAAATTGTAGCTTCGAGCCA
* * * * *
5904381 CTCCAATGCCATTTCAGGGAGAAGAAATTTGTAGTTTCGATCTACTCCGCTGGAACTTTAAAGAG
1 CTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGATGGAACTTCAAGGAG
5904446 ATAAAAATT
66 ATAAAAATT
5904455 ATTGATTTCA
Statistics
Matches: 140, Mismatches: 20, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
87 1 0.01
88 139 0.99
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (88 bp):
CTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGATGGAACTTCAAGGAG
ATAAAAATTGTAGCTTCGAGCCA
Found at i:5904557 original size:86 final size:86
Alignment explanation
Indices: 5904467--5904972 Score: 316
Period size: 86 Copynumber: 5.8 Consensus size: 86
5904457 TGATTTCAAC
* * *
5904467 CTGCTCCACTACTGCTTAGGGAGATAGGAT-GGTGGCTTAAATCTACTCCACTACTGCTTAGGGA
1 CTGCTCCACTACTGCTTAGGGAGACAAGATCGATGGCTTAAATCTACTCCACTACTGCTTAGGGA
*
5904531 GATAAGATTTGTTATCTTTGAT
66 GATAAGATTTGTAATCTTT-AT
* *** * * *
5904553 CTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATATTCAACCTACTCCACTACTGCTTAAGG
1 CTGCTCCACTACTGCTTAGGGAGACAAGATCGAT-GGCTTAAATCTACTCCACTACTGCTTAGGG
* * * *
5904618 AGATAGGA-TGGTGA-CTTAAAT
65 AGATAAGATTTGTAATCTT-TAT
* * * * * * *
5904639 CTGTTCCACTGCTGCTTAAGGAGACAAGATTC-ACCGTCTTCAATCTGCTCCACTACTGCTTAGG
1 CTGCTCCACTACTGCTTAGGGAGACAAGA-TCGA-TGGCTTAAATCTACTCCACTACTGCTTAGG
* *
5904703 GAGATAAGATCTGTAATCTTTAGC
64 GAGATAAGATTTGTAATCTTTA-T
* ***
5904727 CTACTCCACTACTGCTTAGGGAGATGGGAT-GATGGCTTAAATCTACTCCACTACTGCTTAGGGA
1 CTGCTCCACTACTGCTTAGGGAGACAAGATCGATGGCTTAAATCTACTCCACTACTGCTTAGGGA
* * *** *
5904791 GACAAGATTCGCCGTCTTCAAT
66 GATAAGATTTGTAATCTT-TAT
* * * ** * *
5904813 -TCGCTCCACTACTAC-TATGGGAGATAAGATCTGTAAT--CTTCAGCCTACTTCACTACTGTTT
1 CT-GCTCCACTACTGCTTA-GGGAGACAAGATC-G--ATGGCTTAAATCTACTCCACTACTGCTT
* * * *
5904874 AGGGAGATAGGA-TGGT-AGCTTAAAT
61 AGGGAGATAAGATTTGTAATCTT-TAT
** * * ** * *
5904899 CTGCTCCACTTTTGCTTAGGGAGGCAAGATTCG-TCGTCTTCGATCTTCTCCACTACTGCTGAGG
1 CTGCTCCACTACTGCTTAGGGAGACAAGA-TCGAT-GGCTTAAATCTACTCCACTACTGCTTAGG
5904963 GAGATAAGAT
64 GAGATAAGAT
5904973 CTGTGAATTC
Statistics
Matches: 320, Mismatches: 77, Indels: 45
0.72 0.17 0.10
Matches are distributed among these distances:
83 1 0.00
85 3 0.01
86 207 0.65
87 21 0.07
88 86 0.27
90 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (86 bp):
CTGCTCCACTACTGCTTAGGGAGACAAGATCGATGGCTTAAATCTACTCCACTACTGCTTAGGGA
GATAAGATTTGTAATCTTTAT
Found at i:5904595 original size:130 final size:130
Alignment explanation
Indices: 5904461--5904976 Score: 685
Period size: 130 Copynumber: 4.0 Consensus size: 130
5904451 AATTATTGAT
*
5904461 TTCAACCTGCTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTT
1 TTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTT
* * *** ** * * *
5904526 AGGGAGATAAGATTTGTTATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATA
66 AGGGAGACAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
* * ** *
5904591 TTCAACCTACTCCACTACTGCTTAAGGAGATAGGATGGTGACTTAAATCTGTTCCACTGCTGCTT
1 TTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTT
* *
5904656 AAGGAGACAAGATTCACCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
66 AGGGAGACAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
* * * *
5904721 TTTAGCCTACTCCACTACTGCTTAGGGAGATGGGATGATGGCTTAAATCTACTCCACTACTGCTT
1 TTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTT
*
5904786 AGGGAGACAAGATTCGCCGTCTTCAAT-TCGCTCCACTACTAC-TATGGGAGATAAGATCTGTAA
66 AGGGAGACAAGATTCGCCGTCTTCAATCT-GCTCCACTACTGCTTA-GGGAGATAAGATCTGTAA
5904849 TC
129 TC
* * * * * **
5904851 TTCAGCCTACTTCACTACTGTTTAGGGAGATAGGATGGTAGCTTAAATCTGCTCCACTTTTGCTT
1 TTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTT
* * * * *
5904916 AGGGAGGCAAGATTCGTCGTCTTCGATCTTCTCCACTACTGCTGAGGGAGATAAGATCTGT
66 AGGGAGACAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
5904977 GAATTCACCG
Statistics
Matches: 337, Mismatches: 45, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
129 3 0.01
130 332 0.99
131 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (130 bp):
TTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTT
AGGGAGACAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
Found at i:5911683 original size:3 final size:3
Alignment explanation
Indices: 5911670--5911807 Score: 102
Period size: 3 Copynumber: 45.3 Consensus size: 3
5911660 GTTTAATAGT
* ** * * * * *
5911670 ATA ACA ATA ATA ATA ATA ATA ATA GCA ATG ATA ATA ATA ATT TTG GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
5911718 ATAA ATA ATA ATA ATA ATA ATA ACA ATA AT- ATAA ATA ATA AT- ATA
1 AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA
* * *
5911763 AAA ATA ATA ATA GTA ATA ATA GATTA ATTA ATA AT- GTA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA -A-TA A-TA ATA ATA ATA ATA ATA A
5911808 GTAAATAAAC
Statistics
Matches: 106, Mismatches: 22, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
2 5 0.05
3 88 0.83
4 11 0.10
5 2 0.02
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:5911795 original size:38 final size:38
Alignment explanation
Indices: 5911675--5911807 Score: 117
Period size: 38 Copynumber: 3.5 Consensus size: 38
5911665 ATAGTATAAC
** * * * *
5911675 AATAATAATAATAATAATAGCAATGATAATAATAATTTT
1 AATAATAAT-ATAATAATAATAATAATAACAATAATATA
**
5911714 GGTAATAA-ATAATAATAATAATAATAACAATAATATA
1 AATAATAATATAATAATAATAATAATAACAATAATATA
* * *
5911751 AATAATAATATAAAAATAATAATAGTAATAATAGAT-TA
1 AATAATAATATAATAATAATAATAATAACAATA-ATATA
* *
5911789 ATTAATAATGTAATAATAA
1 AATAATAATATAATAATAA
5911808 GTAAATAAAC
Statistics
Matches: 76, Mismatches: 16, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
37 29 0.38
38 39 0.51
39 8 0.11
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (38 bp):
AATAATAATATAATAATAATAATAATAACAATAATATA
Found at i:5917325 original size:34 final size:34
Alignment explanation
Indices: 5917277--5917349 Score: 128
Period size: 34 Copynumber: 2.1 Consensus size: 34
5917267 CCTTACAATT
* *
5917277 ATAATTTATAATTAGTAGTTTAAAAATTTTTAGA
1 ATAAATTATAATTAGTAGTTTAAAAATTGTTAGA
5917311 ATAAATTATAATTAGTAGTTTAAAAATTGTTAGA
1 ATAAATTATAATTAGTAGTTTAAAAATTGTTAGA
5917345 ATAAA
1 ATAAA
5917350 CAAAATTTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (34 bp):
ATAAATTATAATTAGTAGTTTAAAAATTGTTAGA
Found at i:5923755 original size:17 final size:17
Alignment explanation
Indices: 5923733--5923767 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
5923723 ATGTAATTTT
* *
5923733 TTTTAAATTTTTTAAAA
1 TTTTAAATATATTAAAA
5923750 TTTTAAATATATTAAAA
1 TTTTAAATATATTAAAA
5923767 T
1 T
5923768 ATGTTAAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTTAAATATATTAAAA
Found at i:5924553 original size:9 final size:9
Alignment explanation
Indices: 5924539--5924577 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
5924529 TTTTAAAAAA
5924539 TAAATATAT
1 TAAATATAT
5924548 TAAATATAT
1 TAAATATAT
*
5924557 TAAA-ATTT
1 TAAATATAT
5924565 TAAATATAT
1 TAAATATAT
5924574 TAAA
1 TAAA
5924578 AAATGTTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
8 7 0.26
9 20 0.74
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
TAAATATAT
Found at i:5924569 original size:17 final size:17
Alignment explanation
Indices: 5924506--5924578 Score: 69
Period size: 17 Copynumber: 4.2 Consensus size: 17
5924496 TATAGATAAA
*
5924506 AAAATTTCTTAATATACTT
1 AAAATTT-TAAATATA-TT
* *
5924525 AGAATTTTAAA-A-AAT
1 AAAATTTTAAATATATT
*
5924540 AAATATATTAAATATATT
1 AAA-ATTTTAAATATATT
5924558 AAAATTTTAAATATATT
1 AAAATTTTAAATATATT
5924575 AAAA
1 AAAA
5924579 AATGTTAAGT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
15 3 0.07
16 8 0.18
17 19 0.43
18 8 0.18
19 6 0.14
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (17 bp):
AAAATTTTAAATATATT
Found at i:5924631 original size:13 final size:13
Alignment explanation
Indices: 5924615--5924640 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5924605 TATTTAATAT
5924615 ATATTTTTTAAAA
1 ATATTTTTTAAAA
5924628 ATATTTTTTAAAA
1 ATATTTTTTAAAA
5924641 TTTTAATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATATTTTTTAAAA
Found at i:5924772 original size:30 final size:30
Alignment explanation
Indices: 5924737--5924799 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
5924727 TAAAATTTTA
5924737 AATATGTTAAAGAAAATGTTGAGTATAACC
1 AATATGTTAAAGAAAATGTTGAGTATAACC
5924767 AATATGTTAAAGAAAATGTTGAGTATAACC
1 AATATGTTAAAGAAAATGTTGAGTATAACC
5924797 AAT
1 AAT
5924800 TTTAAGTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.48, C:0.06, G:0.16, T:0.30
Consensus pattern (30 bp):
AATATGTTAAAGAAAATGTTGAGTATAACC
Found at i:5925525 original size:71 final size:70
Alignment explanation
Indices: 5925436--5925716 Score: 273
Period size: 71 Copynumber: 3.9 Consensus size: 70
5925426 ATATTAAAAA
* *
5925436 TTTAAAATATATTGAATATATTAAATTTTAAAATTGGTTATACTTAACATTTTTTTAATATATTT
1 TTTAAAAT-TATTAAATATATTAAATTTTAAAATTGATTATACTTAACATTTTTTTAATATATTT
5925501 AATTTT
65 AATTTT
5925507 TTTAAAATGTATTAAATATATTAAAATTTTAAAATTGATTATACTTAACA-TTTTTTAATATATT
1 TTTAAAAT-TATTAAATATATT-AAATTTTAAAATTGATTATACTTAACATTTTTTTAATATATT
5925571 TAATTTT
64 TAATTTT
** * * ** * * * * * **
5925578 TTTAAGTTTTTTAAA-ATTTTAAATATATTAAGAATTTTTTTTGTCTTTAC-CTATTAAAATATA
1 TTTAAAATTATTAAATATATTAAAT-T-TTAA-AATTGATTAT-ACTTAACATTTTTTTAATATA
* *
5925641 TATTAAATAT
62 T-TTAATTTT
* * *
5925651 ATTAAAATT-TTAAATATAATAAAATTTTAAAATTAATTATACTTAACATTTTTTTAATATATTT
1 TTTAAAATTATTAAATAT-ATTAAATTTTAAAATTGATTATACTTAACATTTTTTTAATATATTT
5925715 AA
65 AA
5925717 AATTTTAGAA
Statistics
Matches: 169, Mismatches: 31, Indels: 21
0.76 0.14 0.10
Matches are distributed among these distances:
68 4 0.02
69 5 0.03
70 19 0.11
71 71 0.42
72 50 0.30
73 15 0.09
74 5 0.03
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (70 bp):
TTTAAAATTATTAAATATATTAAATTTTAAAATTGATTATACTTAACATTTTTTTAATATATTTA
ATTTT
Found at i:5925615 original size:27 final size:28
Alignment explanation
Indices: 5925505--5925616 Score: 67
Period size: 27 Copynumber: 4.2 Consensus size: 28
5925495 ATATTTAATT
*
5925505 TTTTTAAAATGTATTAAATATATTAA-AA
1 TTTTTAAAATAT-TTAAATATATTAAGAA
* * * *
5925533 -TTTT-AAA-A-TTGATTATACTTAACAT
1 TTTTTAAAATATTTAAATATA-TTAAGAA
* * * * *
5925558 TTTTTAATATATTTAATTTTTTTAAG-T
1 TTTTTAAAATATTTAAATATATTAAGAA
5925585 TTTTTAAAAT-TTTAAATATATTAAGAA
1 TTTTTAAAATATTTAAATATATTAAGAA
5925612 TTTTT
1 TTTTT
5925617 TTTGTCTTTA
Statistics
Matches: 63, Mismatches: 14, Indels: 15
0.68 0.15 0.16
Matches are distributed among these distances:
23 7 0.11
24 4 0.06
25 1 0.02
26 19 0.30
27 21 0.33
28 5 0.08
29 6 0.10
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (28 bp):
TTTTTAAAATATTTAAATATATTAAGAA
Found at i:5925687 original size:17 final size:17
Alignment explanation
Indices: 5925643--5925681 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
5925633 AAAATATATA
*
5925643 TTAAATATATTAAAATT
1 TTAAATATAATAAAATT
5925660 TTAAATATAATAAAATT
1 TTAAATATAATAAAATT
5925677 TTAAA
1 TTAAA
5925682 ATTAATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAAATATAATAAAATT
Found at i:5925716 original size:20 final size:21
Alignment explanation
Indices: 5925683--5925722 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
5925673 AATTTTAAAA
*
5925683 TTAATTATACTTAACATTTTT
1 TTAATTATACTTAAAATTTTT
*
5925704 TTAA-TATATTTAAAATTTT
1 TTAATTATACTTAAAATTTT
5925723 AGAAAACTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (21 bp):
TTAATTATACTTAAAATTTTT
Found at i:5927928 original size:2 final size:2
Alignment explanation
Indices: 5927923--5927949 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
5927913 TATATGTAAA
5927923 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
5927950 AATAGTAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:5928481 original size:17 final size:17
Alignment explanation
Indices: 5928447--5928498 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
5928437 AAGCAAATAT
** *
5928447 AACAAAGTAAAATCAAA
1 AACAAAGTATTATAAAA
5928464 AACAAAGTATTATAAAA
1 AACAAAGTATTATAAAA
* *
5928481 AAAAAACTATATATAAAA
1 AACAAAGTAT-TATAAAA
5928499 GCTATATGTA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 22 0.76
18 7 0.24
ACGTcount: A:0.69, C:0.08, G:0.04, T:0.19
Consensus pattern (17 bp):
AACAAAGTATTATAAAA
Found at i:5928578 original size:3 final size:3
Alignment explanation
Indices: 5928547--5928790 Score: 142
Period size: 3 Copynumber: 83.3 Consensus size: 3
5928537 TATAAGTAAA
* *
5928547 AAT AAGT AAT AGT AAT GAA- AAT AAT -AT AAT AAT AAT AAT GAT -AT
1 AAT AA-T AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
5928591 AA- AAGGT GAAT -AT AAT -AT AAT AAT ATT AA- AAT AAA AAT AAA AAT
1 AAT AA--T -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
5928635 AA- AGT AAT AGAT AAT AAT AA- ATAT AAT AAT AGA- AAT -AT AAT ATT
1 AAT AAT AAT A-AT AAT AAT AAT A-AT AAT AAT A-AT AAT AAT AAT AAT
* * * *
5928679 AA- AGAT AAT ACT AA- ATAT AAT -AT TAT TAT TAT AAT -AT AAT AAT
1 AAT A-AT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
5928722 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT AAT AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
5928769 AGT AAT GAT GAT AAT ACT AAT A
1 AAT AAT AAT AAT AAT AAT AAT A
5928791 TAAAAAGAAT
Statistics
Matches: 191, Mismatches: 24, Indels: 52
0.72 0.09 0.19
Matches are distributed among these distances:
2 27 0.14
3 149 0.78
4 13 0.07
6 2 0.01
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:5928764 original size:38 final size:38
Alignment explanation
Indices: 5928538--5928793 Score: 151
Period size: 38 Copynumber: 6.7 Consensus size: 38
5928528 ATATATATAT
* * *
5928538 ATAAGTAAAAATAAGTAATAGTAATGAAAATAAT-ATAATA
1 ATAA-TAATAATAA-TAATAATAAT-ATAATAATAATAATA
*
5928578 ATAATAATGAT-ATAA-AAGGTGAATATAAT-ATAATAATA
1 ATAATAATAATAATAATAA--T-AATATAATAATAATAATA
* * *
5928616 TTAA-AATAAAAATAAAAATAA-AGTAATAGATAATAATA
1 ATAATAATAATAATAATAATAATA-TAATA-ATAATAATA
*
5928654 A-ATATAATAATAGA-AAT-ATAATATTAA-AGATAATACTA
1 ATA-ATAATAATA-ATAATAATAATA-TAATA-ATAATAATA
* * *
5928692 A-ATATAAT-ATTATTATTATAATATAATAATAATAATA
1 ATA-ATAATAATAATAATAATAATATAATAATAATAATA
*
5928729 ATAATAATAATAATAATAATAATA-ATATAATAATAATG
1 ATAATAATAATAATAATAATAATATA-ATAATAATAATA
* * * *
5928767 ATAGTAATGATGATAATACTAATATAA
1 ATAATAATAATAATAATAATAATATAA
5928794 AAAGAATAGA
Statistics
Matches: 173, Mismatches: 23, Indels: 42
0.73 0.10 0.18
Matches are distributed among these distances:
35 1 0.01
36 8 0.05
37 33 0.19
38 103 0.60
39 23 0.13
40 5 0.03
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (38 bp):
ATAATAATAATAATAATAATAATATAATAATAATAATA
Found at i:5930172 original size:18 final size:19
Alignment explanation
Indices: 5930130--5930175 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
5930120 TGGTTTAAGT
**
5930130 GGTTTTGGGTAGTTAGTTG
1 GGTTTTGGGTAGTTAAATG
5930149 GG-TTTGGGTAG-TAAATG
1 GGTTTTGGGTAGTTAAATG
5930166 GGTTTTGGGT
1 GGTTTTGGGT
5930176 TATAATGTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 6 0.25
18 16 0.67
19 2 0.08
ACGTcount: A:0.13, C:0.00, G:0.43, T:0.43
Consensus pattern (19 bp):
GGTTTTGGGTAGTTAAATG
Found at i:5931133 original size:26 final size:26
Alignment explanation
Indices: 5931104--5931211 Score: 155
Period size: 26 Copynumber: 4.2 Consensus size: 26
5931094 TGGTACAAAT
5931104 TGATAATAGG-TTAGGTAAATGTTCCA
1 TGATAAT-GGATTAGGTAAATGTTCCA
* * *
5931130 TGATGATGGATTAGGTAAATATTTCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
5931156 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
5931182 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
5931208 TGAT
1 TGAT
5931212 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
25 2 0.03
26 71 0.97
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:5931182 original size:52 final size:52
Alignment explanation
Indices: 5931104--5931211 Score: 171
Period size: 52 Copynumber: 2.1 Consensus size: 52
5931094 TGGTACAAAT
* *
5931104 TGATAATAGGTTAGGTAAATGTTCCATGATGATGGATTAGGTAAATATTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* * *
5931156 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
5931208 TGAT
1 TGAT
5931212 GGGCATTTCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:5947489 original size:36 final size:36
Alignment explanation
Indices: 5947448--5947520 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
5947438 ACTATTAGAG
5947448 TTCTTGAGTATGGATTTTAAAAGAATGAATTTTTAT
1 TTCTTGAGTATGGATTTTAAAAGAATGAATTTTTAT
5947484 TTCTTGAGTATGGATTTTAAAAGAATGAATTTTTAT
1 TTCTTGAGTATGGATTTTAAAAGAATGAATTTTTAT
5947520 T
1 T
5947521 AATACTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.33, C:0.03, G:0.16, T:0.48
Consensus pattern (36 bp):
TTCTTGAGTATGGATTTTAAAAGAATGAATTTTTAT
Found at i:5948144 original size:18 final size:17
Alignment explanation
Indices: 5948110--5948148 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
5948100 AAGTGTTATG
* *
5948110 TTTTAAAAATCTTTACC
1 TTTTAAAAACCTCTACC
5948127 TTTTCAAAAACCTCTACC
1 TTTT-AAAAACCTCTACC
5948145 TTTT
1 TTTT
5948149 TAAACTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (17 bp):
TTTTAAAAACCTCTACC
Found at i:5949023 original size:21 final size:21
Alignment explanation
Indices: 5948997--5949050 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
5948987 TTGCAACCCT
5948997 GTATTGATACTTACCTATGTG
1 GTATTGATACTTACCTATGTG
5949018 GTATTGATACTTACCTATGTG
1 GTATTGATACTTACCTATGTG
5949039 GTATTGATACTT
1 GTATTGATACTT
5949051 GACTAAAAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.24, C:0.13, G:0.19, T:0.44
Consensus pattern (21 bp):
GTATTGATACTTACCTATGTG
Found at i:5952560 original size:29 final size:30
Alignment explanation
Indices: 5952484--5952560 Score: 86
Period size: 31 Copynumber: 2.6 Consensus size: 30
5952474 ACACAAATTA
* *
5952484 AAATCAGAGTTTCATGTATATATTTGAACT
1 AAATCAAAGTTTCATGTATATAATTGAACT
* *
5952514 ATGATCAAAGTTTAATGTATATAATT-ACACT
1 A-AATCAAAGTTTCATGTATATAATTGA-ACT
5952545 AAATCAAAG-TTCATGT
1 AAATCAAAGTTTCATGT
5952561 GTCAAATTGT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
29 6 0.15
30 9 0.23
31 24 0.62
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (30 bp):
AAATCAAAGTTTCATGTATATAATTGAACT
Found at i:5955213 original size:2 final size:2
Alignment explanation
Indices: 5955202--5955260 Score: 86
Period size: 2 Copynumber: 30.5 Consensus size: 2
5955192 ATAAAAGCTT
*
5955202 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
5955243 TA TG TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA T
5955261 TCCATTACCG
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
1 2 0.04
2 49 0.96
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:5955965 original size:2 final size:2
Alignment explanation
Indices: 5955958--5955982 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
5955948 TTATTTTGTA
5955958 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
5955983 ACACTTACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:5956839 original size:2 final size:2
Alignment explanation
Indices: 5956834--5956889 Score: 103
Period size: 2 Copynumber: 28.0 Consensus size: 2
5956824 TTTCCAGATA
*
5956834 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5956876 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
5956890 TCAAACACAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:5958435 original size:33 final size:33
Alignment explanation
Indices: 5958398--5958473 Score: 152
Period size: 33 Copynumber: 2.3 Consensus size: 33
5958388 ATTATGAAGT
5958398 TAGGCATTTTGATTCTTCAATTCAAAAAACTGC
1 TAGGCATTTTGATTCTTCAATTCAAAAAACTGC
5958431 TAGGCATTTTGATTCTTCAATTCAAAAAACTGC
1 TAGGCATTTTGATTCTTCAATTCAAAAAACTGC
5958464 TAGGCATTTT
1 TAGGCATTTT
5958474 TTGAATTTTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (33 bp):
TAGGCATTTTGATTCTTCAATTCAAAAAACTGC
Found at i:5964555 original size:4 final size:4
Alignment explanation
Indices: 5964546--5964571 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
5964536 TTTGAGTATC
5964546 CTGT CTGT CTGT CTGT CTGT CTGT CT
1 CTGT CTGT CTGT CTGT CTGT CTGT CT
5964572 TATGATCTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.27, G:0.23, T:0.50
Consensus pattern (4 bp):
CTGT
Found at i:5968068 original size:114 final size:114
Alignment explanation
Indices: 5967868--5968097 Score: 442
Period size: 114 Copynumber: 2.0 Consensus size: 114
5967858 ATCGGTTTAA
5967868 AGAAGCAGCTCTATGGGGTTGAATTGACCTCCCAGGAAAGTCACCCATGCCCTAGGGGAATTGTA
1 AGAAGCAGCTCTATGGGGTTGAATTGACCTCCCAGGAAAGTCACCCATGCCCTAGGGGAATTGTA
5967933 ATAAAAGAAGTGAAAAAGTATAAACAAAACAAATCTTCCCTAAAGAATC
66 ATAAAAGAAGTGAAAAAGTATAAACAAAACAAATCTTCCCTAAAGAATC
5967982 AGAAGCAGCTCTATGGGGTTGAATTGACCTCCCAGGAAAGTCACCCATGCCCTAGGGGAATTGTA
1 AGAAGCAGCTCTATGGGGTTGAATTGACCTCCCAGGAAAGTCACCCATGCCCTAGGGGAATTGTA
* *
5968047 ATAAAAGGAGTGAAAAAGTATAAACAAAACAAATCTTCCTTAAAGAATC
66 ATAAAAGAAGTGAAAAAGTATAAACAAAACAAATCTTCCCTAAAGAATC
5968096 AG
1 AG
5968098 TCACAAGATG
Statistics
Matches: 114, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
114 114 1.00
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.20
Consensus pattern (114 bp):
AGAAGCAGCTCTATGGGGTTGAATTGACCTCCCAGGAAAGTCACCCATGCCCTAGGGGAATTGTA
ATAAAAGAAGTGAAAAAGTATAAACAAAACAAATCTTCCCTAAAGAATC
Found at i:5970902 original size:19 final size:18
Alignment explanation
Indices: 5970878--5970916 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
5970868 TAAGTCATTG
*
5970878 GTTAAAACGAAGTTCAAAT
1 GTTAAAAAGAA-TTCAAAT
*
5970897 GTTAAAAATAATTCAAAT
1 GTTAAAAAGAATTCAAAT
5970915 GT
1 GT
5970917 ATATATTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.49, C:0.08, G:0.13, T:0.31
Consensus pattern (18 bp):
GTTAAAAAGAATTCAAAT
Found at i:5979252 original size:470 final size:468
Alignment explanation
Indices: 5978302--5979492 Score: 1672
Period size: 476 Copynumber: 2.5 Consensus size: 468
5978292 ATCTACAAAT
* *
5978302 ATAAACAAGGGAACAAAAAGTAACGTTTCTACTTAAGTATAACATTCAAAAGCTTTAGAAAATAA
1 ATAAACAAGGGAACAAAAA-TAACATTTCTACTTAAGTATAACATTCAAAAGCTTTAGAAAATGA
* * *
5978367 GATAGTTGACCAATGCTAGATTGCATCAGTACTTCCAACAAA-TCCACTTTCAGAATCTTTTGAC
65 GATGGTTGACCAATGCTAGATTGCATCAGAACTTTCAACAAATTCCACTTTCAGAATCTTTTGAC
* * *
5978431 ATTAAATACAGTGGTTGATTGTTAATGCAATGATTTGCGATAAACC-AACACAATATAATTATTA
130 ATTAAATACAGTGGTTGATTGTTAATGCAATGATTCGCGATAAACCGAA-AGAATCTAATTATTA
* *
5978495 TACATCATAATGAACTAAACAAATTTGCCAAAAGAACTTATCAACTACATGTGGCAAGTTACAAA
194 TACATCATAATGAACTAACCAAATTTGCCAAAAGAACTTATCAACTACATATGGCAAGTTACAAA
* * * *
5978560 GAAACATATTCCATTTTTGATAATAGCTACAAAACCTAGAATCTAATAGTGCCAATGGAATATAA
259 GAAACAGATTCC--------T-ATAGCTACAAAACCTAGAATCTAATAGAGCCAACGGAAGATAA
* * *
5978625 AATGTCATCAAATCGTAAAACCCAGAAATCTTCATTCACTTGGGTTTCACGAGTAGCCAAAGGGC
315 AATGTCATCAAATCGAAAAAACCAGAAATCTTCATTCACTTAGGTTTCACGAGTAGCCAAAGGGC
* *
5978690 ACTTCTTACAACTTCTTGTGACATTGACTGGAGAAAATTCCTTAAATAATAGCCATATAAGGCAC
380 ACTTCTTACAACTTCTTGTGACATTAACTGGAGAAAATTCCTTAAATAATAACCATATAAGGCAC
* *
5978755 ATGTTACTTGTAGTCAACACTCTA
445 ATATTACTTGTAGTCAACACCCTA
5978779 ATAAACAAGGGAACAACAAATAACATTTCTACTTAAGTATAACATTCAAAAGCTTTAGAAAATGA
1 ATAAACAAGGGAACAA-AAATAACATTTCTACTTAAGTATAACATTCAAAAGCTTTAGAAAATGA
* * *
5978844 GATGGTTGGCCAATGCTAGATTGCATCCA-AACTTTCAACAAAATTCCACTTTCAAAATGTTTTG
65 GATGGTTGACCAATGCTAGATTGCAT-CAGAACTTTCAAC-AAATTCCACTTTCAGAATCTTTTG
* * * * * *
5978908 AAATTAAATACAGTAGTTGATTGTTAACGCAAAGATTCACGATAAACCGAAAGAATCTATTTATT
128 ACATTAAATACAGTGGTTGATTGTTAATGCAATGATTCGCGATAAACCGAAAGAATCTAATTATT
* *
5978973 ATACATCATAACGAACTAACCAACTTTGCCAAAAGAACTTATCAACTACATATGGCAAGTTACAA
193 ATACATCATAATGAACTAACCAAATTTGCCAAAAGAACTTATCAACTACATATGGCAAGTTACAA
* *
5979038 AGAAACGGATTCC-ATAGCTACAAAACCTAGAATCTAATTGAGCCAACGGAAAGATAGAAA-GTC
258 AGAAACAGATTCCTATAGCTACAAAACCTAGAATCTAATAGAGCCAACGG-AAGATA-AAATGTC
** **
5979101 ATTGAATCGAAAAAACCAGAAATCTTTGTTCACTTAGGTTTCACGAGTAGCCAAAGGGCACTTCT
321 ATCAAATCGAAAAAACCAGAAATCTTCATTCACTTAGGTTTCACGAGTAGCCAAAGGGCACTTCT
** * *
5979166 TATGACTTTTTGTGACATTAACTGGAGAAAATTCCTTAAATAATAACCATATAAGGCTCATATTA
386 TACAACTTCTTGTGACATTAACTGGAGAAAATTCCTTAAATAATAACCATATAAGGCACATATTA
5979231 CTTGTAGTCAACACCCTA
451 CTTGTAGTCAACACCCTA
*
5979249 ATAAACAAGGGAACAAGAAATAACATTTCTACTTAGGTATAACTATAACATTCAAAAGCTTTAGA
1 ATAAACAAGGGAACAA-AAATAACATTTCTAC-----T-TAAGTATAACATTCAAAAGCTTTAGA
* * * * * *
5979314 AAATGAGATGGTTGCCCGATGCTAGATTGCATCAGAACTGTCAACGTAGTTCCACTTCCAGAATC
59 AAATGAGATGGTTGACCAATGCTAGATTGCATCAGAACTTTCAAC-AAATTCCACTTTCAGAATC
*
5979379 TTTTGACATTAAATACAGTGGTTGATTGTTAATGCAATGATTCGCGATAAACCGACAGAATCTAA
123 TTTTGACATTAAATACAGTGGTTGATTGTTAATGCAATGATTCGCGATAAACCGAAAGAATCTAA
*
5979444 TTATTATACATCATAATGAACTAACCAAATTTGTCAAAAGAACTTATCA
188 TTATTATACATCATAATGAACTAACCAAATTTGCCAAAAGAACTTATCA
5979493 TGGCAGGTTT
Statistics
Matches: 637, Mismatches: 63, Indels: 29
0.87 0.09 0.04
Matches are distributed among these distances:
469 33 0.05
470 172 0.27
471 3 0.00
475 3 0.00
476 182 0.29
477 91 0.14
478 8 0.01
479 143 0.22
480 2 0.00
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (468 bp):
ATAAACAAGGGAACAAAAATAACATTTCTACTTAAGTATAACATTCAAAAGCTTTAGAAAATGAG
ATGGTTGACCAATGCTAGATTGCATCAGAACTTTCAACAAATTCCACTTTCAGAATCTTTTGACA
TTAAATACAGTGGTTGATTGTTAATGCAATGATTCGCGATAAACCGAAAGAATCTAATTATTATA
CATCATAATGAACTAACCAAATTTGCCAAAAGAACTTATCAACTACATATGGCAAGTTACAAAGA
AACAGATTCCTATAGCTACAAAACCTAGAATCTAATAGAGCCAACGGAAGATAAAATGTCATCAA
ATCGAAAAAACCAGAAATCTTCATTCACTTAGGTTTCACGAGTAGCCAAAGGGCACTTCTTACAA
CTTCTTGTGACATTAACTGGAGAAAATTCCTTAAATAATAACCATATAAGGCACATATTACTTGT
AGTCAACACCCTA
Found at i:5979627 original size:70 final size:70
Alignment explanation
Indices: 5979541--5979748 Score: 321
Period size: 70 Copynumber: 3.0 Consensus size: 70
5979531 TAAACTGGTT
* * * * *
5979541 CAAAGAAATGGCTTCCATTTTTGTTAATAGCTACAAAA-CTAGAATCTAATTGCGGCAATGGAAA
1 CAAAGAAACGGATTCCA-TTTTGTTGATAGCTACAAAATCTAGAATCTAATTGTGCCAATGGAAA
5979605 GATAAA
65 GATAAA
* *
5979611 CAAAGAAACGGATTCCATTTTGTCGATAGCTACAAAATCTAGAATCTAATTGTGTCAATGGAAAG
1 CAAAGAAACGGATTCCATTTTGTTGATAGCTACAAAATCTAGAATCTAATTGTGCCAATGGAAAG
5979676 ATAAA
66 ATAAA
*
5979681 CAAAGAAACGGATTCCATTTTGTTGATAGCTACAAAATCTAGAATCT-ATTGTGCCAATTGAAAG
1 CAAAGAAACGGATTCCATTTTGTTGATAGCTACAAAATCTAGAATCTAATTGTGCCAATGGAAAG
5979745 ATAA
66 ATAA
5979749 GAAGTCATTG
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
69 37 0.29
70 91 0.71
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (70 bp):
CAAAGAAACGGATTCCATTTTGTTGATAGCTACAAAATCTAGAATCTAATTGTGCCAATGGAAAG
ATAAA
Found at i:5983274 original size:75 final size:74
Alignment explanation
Indices: 5983153--5983324 Score: 216
Period size: 75 Copynumber: 2.4 Consensus size: 74
5983143 TCCATGGCAA
** *
5983153 AGTGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTA
1 AGTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-
*
5983213 T-CCATACTG
65 TCCCATACCG
5983222 AGCTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT
1 AG-TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT
5983287 TCCCATACCG
65 TCCCATACCG
*
5983297 AGT-TAAAAATGTAGGTATGGTATT-TCAA
1 AGTGT-GAAATGTAGGTATGGTATTATCAA
5983325 TGAGGAAAAC
Statistics
Matches: 90, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
69 2 0.02
70 18 0.20
73 9 0.10
74 20 0.22
75 41 0.46
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (74 bp):
AGTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTT
CCCATACCG
Found at i:5983293 original size:35 final size:35
Alignment explanation
Indices: 5983158--5983322 Score: 174
Period size: 35 Copynumber: 4.6 Consensus size: 35
5983148 GGCAAAGTGT
* **
5983158 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
5983193 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
5983228 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
5983268 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
5983303 -AAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
5983323 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 8, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
34 19 0.16
35 66 0.57
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:5990773 original size:75 final size:75
Alignment explanation
Indices: 5990654--5990824 Score: 212
Period size: 75 Copynumber: 2.4 Consensus size: 75
5990644 CATGGCAAAG
** *
5990654 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
5990713 CCATACTGAGC
65 CCATACCGAGC
5990724 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
5990789 CATACCGAGT
66 CATACCGAGC
***
5990799 TAAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
5990825 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 5 0.06
75 60 0.69
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:5990792 original size:35 final size:35
Alignment explanation
Indices: 5990657--5990822 Score: 174
Period size: 35 Copynumber: 4.6 Consensus size: 35
5990647 GGCAAAGTGT
* **
5990657 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
5990692 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
5990727 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
5990767 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
*
5990802 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
5990823 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
35 85 0.73
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:6006296 original size:32 final size:32
Alignment explanation
Indices: 6006260--6006359 Score: 93
Period size: 32 Copynumber: 3.2 Consensus size: 32
6006250 CTTTAATTTG
6006260 AATTAAATTAATAAATTTTTGTAAATATTAAA
1 AATTAAATTAATAAATTTTTGTAAATATTAAA
* * * *
6006292 AATTAAATTTATTAATTTTT-TATAT-TTAAG
1 AATTAAATTAATAAATTTTTGTAAATATTAAA
* *
6006322 AA-CAAATTAATATAA--TGTGTAAATATTAAA
1 AATTAAATTAATA-AATTTTTGTAAATATTAAA
*
6006352 AGTTAAAT
1 AATTAAAT
6006360 ATATTATTAA
Statistics
Matches: 52, Mismatches: 12, Indels: 9
0.71 0.16 0.12
Matches are distributed among these distances:
28 2 0.04
29 11 0.21
30 13 0.25
31 8 0.15
32 18 0.35
ACGTcount: A:0.50, C:0.01, G:0.05, T:0.44
Consensus pattern (32 bp):
AATTAAATTAATAAATTTTTGTAAATATTAAA
Found at i:6007519 original size:23 final size:23
Alignment explanation
Indices: 6007493--6007536 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
6007483 AATTTTAATT
6007493 TTAAAAT-TAAATAAATAAAAAGA
1 TTAAAATCTAAA-AAATAAAAAGA
*
6007516 TTAAATTCTAAAAAATAAAAA
1 TTAAAATCTAAAAAATAAAAA
6007537 TAAAAACTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (23 bp):
TTAAAATCTAAAAAATAAAAAGA
Done.