Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 220 of 410
Found at i:67611736 original size:16 final size:16
Alignment explanation
Indices: 67611715--67611747 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
67611705 AAATGACAAT
67611715 ATCTCC-CTCCAATACC
1 ATCTCCACTCCAA-ACC
67611731 ATCTCCACTCCAAACC
1 ATCTCCACTCCAAACC
67611747 A
1 A
67611748 CCGTCATGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.30, C:0.48, G:0.00, T:0.21
Consensus pattern (16 bp):
ATCTCCACTCCAAACC
Found at i:67612171 original size:17 final size:18
Alignment explanation
Indices: 67612141--67612182 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
67612131 AGTTAATTCA
*
67612141 TCAAATTAACTAATTT-TC
1 TCAAA-TAAATAATTTATC
67612159 TCAAATAAATAATTTATC
1 TCAAATAAATAATTTATC
67612177 -CAAATA
1 TCAAATA
67612183 TTCTAGGCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (18 bp):
TCAAATAAATAATTTATC
Found at i:67615640 original size:40 final size:40
Alignment explanation
Indices: 67615580--67615742 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
67615570 TGAATGATAC
* * *
67615580 CCGGGCTAAG-TCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
67615619 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * * *
67615659 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
67615699 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
67615739 CCGG
1 CCGG
67615743 TTAAATCCCG
Statistics
Matches: 104, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
39 13 0.12
40 86 0.83
41 5 0.05
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:67623748 original size:40 final size:40
Alignment explanation
Indices: 67623693--67623856 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
67623683 TGAATGATAC
* * *
67623693 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
67623733 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * * *
67623773 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
67623813 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
67623853 CCGG
1 CCGG
67623857 TTAAATCCCG
Statistics
Matches: 105, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.03
40 97 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:67623826 original size:80 final size:80
Alignment explanation
Indices: 67623693--67623870 Score: 209
Period size: 80 Copynumber: 2.2 Consensus size: 80
67623683 TGAATGATAC
* * * * * *
67623693 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATT-
*
67623757 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* * *
67623773 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTG
**
67623838 TGCTTGTGGTTATAT
66 TGCGAGTGGTTATAT
67623853 CC-GGTTAA-ATCCCGAAGG
1 CCGGGTTAAGA-CCCGAAGG
67623871 TACGTGACTC
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
79 14 0.17
80 66 0.79
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:67633137 original size:40 final size:40
Alignment explanation
Indices: 67633093--67633185 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 40
67633083 TCGGTATCGT
* *
67633093 ACACTTAGTGCCAGATAAAGCCGAAGCTAT-TCCAATTCGC
1 ACACTAAGTGCCAGATAAAGCCGAAGCTATCTCCAA-ACGC
* * * * *
67633133 ACACTAAGTGCTATATATAGCTGAAGCTATCTCGAAACGC
1 ACACTAAGTGCCAGATAAAGCCGAAGCTATCTCCAAACGC
67633173 ACACTAAGTGCCA
1 ACACTAAGTGCCA
67633186 AACATAGTAG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
40 40 0.91
41 4 0.09
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (40 bp):
ACACTAAGTGCCAGATAAAGCCGAAGCTATCTCCAAACGC
Found at i:67635346 original size:40 final size:40
Alignment explanation
Indices: 67635291--67635436 Score: 177
Period size: 40 Copynumber: 3.6 Consensus size: 40
67635281 AATGGTACCT
* *
67635291 GGGCTAAGTCCCGAAGGCATTTATGCGAGTGATTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCC
* *
67635331 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCT
1 GGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATATCC
* * ** *
67635371 GGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCC
* *
67635411 GGGTTAAGACCCGAAGGCAATTGTGC
1 GGGCTAAGACCCGAAGGCATTTGTGC
67635437 TTGTGGTTAT
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 1 0.01
40 88 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCC
Found at i:67635422 original size:80 final size:80
Alignment explanation
Indices: 67635289--67635456 Score: 214
Period size: 80 Copynumber: 2.1 Consensus size: 80
67635279 TGAATGGTAC
* * ** *
67635289 CTGGGCTAAGTCCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CTGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATT-
*
67635353 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* * *
67635369 CTGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CTGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
**
67635434 TGCTTGTGGTTATAT
66 TGCGAGTGGTTATAT
67635449 CT-GGCTAA
1 CTGGGCTAA
67635457 ATTTCGAAGA
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
79 6 0.08
80 67 0.88
81 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
CTGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:67643949 original size:68 final size:70
Alignment explanation
Indices: 67643877--67644074 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
67643867 ACACCCTGTA
* * * *
67643877 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
67643939 ATAAAT
65 ATAAAT
*
67643945 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
67644010 ATAAAT
65 ATAAAT
*
67644016 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
67644075 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:67643988 original size:41 final size:41
Alignment explanation
Indices: 67643943--67644060 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
67643933 TGAAAGATAA
67643943 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
67643984 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67644014 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67644055 ATGTAG
1 ATGTAG
67644061 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:67644000 original size:71 final size:71
Alignment explanation
Indices: 67643911--67644074 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67643901 GAGATGTATC
67643911 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67643976 AGGACA
66 AGGACA
67643982 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67644047 AGGACA
66 AGGACA
67644053 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
67644075 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:67651900 original size:30 final size:30
Alignment explanation
Indices: 67651866--67651925 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67651856 CCCTAGTACG
67651866 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* * *
67651896 AACTTTTGCATATTTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
67651926 GGCTCAAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:67660914 original size:40 final size:39
Alignment explanation
Indices: 67660746--67660916 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
67660736 AGAAATTGAA
* *
67660746 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
67660786 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
67660826 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
67660866 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
67660906 TGATATCCGGG
1 TGATATCCGGG
67660917 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:67669017 original size:40 final size:39
Alignment explanation
Indices: 67668849--67669019 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
67668839 AGAAATTGAA
* *
67668849 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
67668889 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
67668929 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
67668969 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
67669009 TGATATCCGGG
1 TGATATCCGGG
67669020 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:67672338 original size:16 final size:16
Alignment explanation
Indices: 67672314--67672356 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
67672304 ACAGCCAAAC
* *
67672314 TTTCGGCTTTTTGGCA
1 TTTCAGCTTTTTAGCA
67672330 TTTCAGCTTTTTAGCA
1 TTTCAGCTTTTTAGCA
67672346 TTTCAGCTTTT
1 TTTCAGCTTTT
67672357 GCCGATCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.12, C:0.19, G:0.16, T:0.53
Consensus pattern (16 bp):
TTTCAGCTTTTTAGCA
Found at i:67678024 original size:106 final size:107
Alignment explanation
Indices: 67677839--67678085 Score: 327
Period size: 106 Copynumber: 2.3 Consensus size: 107
67677829 CCAAATTGAC
* *
67677839 CCTTATAGGGTAAAATGACTATTTTACCCTTATATGGTAAAATGACTGTTTTGCCCTTATGGGGT
1 CCTTATAGGGTAAAATGACTATTTTACCCTTATATGGTAAAATGACTATTTTGCCCTTATGAGGT
*
67677904 AAAATGACTGTTTTG-CCTTATGGGGTAAAATGACTGTTTTG
66 AAAATGACTGTTTTGTCCTTATGGGGCAAAATGACTGTTTTG
* * * * *
67677945 CCTTATGGGGTAAAATGATTGTTTTTCCCTTATATGGTAAAATGACTATTTTTCCCTTATGAGGT
1 CCTTATAGGGTAAAATGACTATTTTACCCTTATATGGTAAAATGACTATTTTGCCCTTATGAGGT
** *
67678010 CGAATGACTGTTTTGTCCTTATGGGGCAAAATGATTGTTTTG
66 AAAATGACTGTTTTGTCCTTATGGGGCAAAATGACTGTTTTG
* * * *
67678052 CTCCTA-ACTGATAAAATGACTATTTTGCCCTTAT
1 C-CTTATA-GGGTAAAATGACTATTTTACCCTTAT
67678086 GTGATATATG
Statistics
Matches: 120, Mismatches: 18, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
106 71 0.59
107 25 0.21
108 24 0.20
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.40
Consensus pattern (107 bp):
CCTTATAGGGTAAAATGACTATTTTACCCTTATATGGTAAAATGACTATTTTGCCCTTATGAGGT
AAAATGACTGTTTTGTCCTTATGGGGCAAAATGACTGTTTTG
Found at i:67678091 original size:27 final size:27
Alignment explanation
Indices: 67677838--67678086 Score: 272
Period size: 27 Copynumber: 9.3 Consensus size: 27
67677828 CCCAAATTGA
* * *
67677838 CCCTTATAGGGTAAAATGACTATTTTA
1 CCCTTATGGGGTAAAATGACTGTTTTG
**
67677865 CCCTTATATGGTAAAATGACTGTTTTG
1 CCCTTATGGGGTAAAATGACTGTTTTG
67677892 CCCTTATGGGGTAAAATGACTGTTTTG
1 CCCTTATGGGGTAAAATGACTGTTTTG
67677919 -CCTTATGGGGTAAAATGACTGTTTTG
1 CCCTTATGGGGTAAAATGACTGTTTTG
* *
67677945 -CCTTATGGGGTAAAATGATTGTTTTT
1 CCCTTATGGGGTAAAATGACTGTTTTG
** * *
67677971 CCCTTATATGGTAAAATGACTATTTTT
1 CCCTTATGGGGTAAAATGACTGTTTTG
* **
67677998 CCCTTATGAGGTCGAATGACTGTTTTG
1 CCCTTATGGGGTAAAATGACTGTTTTG
* * *
67678025 TCCTTATGGGGCAAAATGATTGTTTTG
1 CCCTTATGGGGTAAAATGACTGTTTTG
* * *
67678052 CTCCTAACT--GATAAAATGACTATTTTG
1 C-CCTTA-TGGGGTAAAATGACTGTTTTG
67678079 CCCTTATG
1 CCCTTATG
67678087 TGATATATGT
Statistics
Matches: 188, Mismatches: 30, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
25 1 0.01
26 54 0.29
27 128 0.68
28 4 0.02
29 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (27 bp):
CCCTTATGGGGTAAAATGACTGTTTTG
Found at i:67691367 original size:524 final size:525
Alignment explanation
Indices: 67685940--67696873 Score: 18761
Period size: 524 Copynumber: 20.9 Consensus size: 525
67685930 TTTCTGGCCA
* *
67685940 TCGAGCAACAAGGTTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCAATTTAG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
*
67686005 AAGGCCATAATGCCACCCTATAAGGGTCTTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
67686070 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
*
67686135 GCTTATAATCCATAGCAAATCATGACATATTCTAAGCCAAAAATCATACCAAAATACATGATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
*
67686200 TAATCTCAGTTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
* *
67686265 CAAAGCTTACCAAATTGACCAATTCAGTTGGCCATTCAAAAGTGCATCAAAACATACCA-TTTTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
67686329 TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
391 TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
* * *
67686394 GGCCACACGACCTGGCACACGCCCGTCTGTGCGACTATGTGATCTGCCCAGACTCATTTCGAAAT
456 GGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAAT
*
67686459 GGCCT
521 GGCTT
*
67686464 TCAAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
* *
67686529 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGAATCAAAATGAATTCATTTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
67686594 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
* *
67686659 GCTTATAATCCATAGCAAATCAAGACATATTCTAAGCCAAAAATCATACCAAAATACATGATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
67686724 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
* *
67686789 C-AAACTTACCAAATTGACCAATTCAGTTGGCCATTCAAAAGTGCATCAAAACATATCATTTTTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCA--TTTT
* * * * *
67686853 TTTTTGGACACAAAACATATGCCAAAATACATTCATGATCACATCCGTAACCAAGCCAAAATTTA
389 TTTTT-AACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGA
* * * *
67686918 CTTGGCCACACGACCTGGCACACACCCGTGTGTGCGACTCTGTGATCTGCCCACGCTCATTTCGA
453 CTTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGA
* *
67686983 CATGGCCT
518 AATGGCTT
*
67686991 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTG-CCGTATGGGCAAAAATAGGCCATTTTG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
* *
67687055 AAGGCCATAATGCGACCCTAGAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
*
67687120 AATTTTCAACCAATTCACAACCAAAACTTACAACACTCATGACATATCATTATCATCAATTTCAT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
* *
67687185 GCTTATAATCCACAGCAAATCATAACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
*
67687250 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGCCACATAC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
* *
67687315 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAACTGCATCAAAACATGCCATTTCTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTT-TT
* *
67687380 TTTTGGACTCAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
390 TTTT-AACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
* * *
67687445 TTGGCCACACGACCTGGCACACGCCCGTGTGTACGACTATGTGATCTGCCCAGGTTCATTTCGAA
454 TTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAA
*
67687510 ATGGCCT
519 ATGGCTT
* * *
67687517 TCGAGCAACAATGCTGAGACACATGCCCGTGTCCCTGCCCGTATGGGCAAAAATAAGCCATTTAG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
* * *
67687582 AAGGCCATAATGCCAACCTATAAGGGTCCTCCCTACAAGCATCAAAACAAATTCATCTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
* * * *
67687647 AATTTTTAACCAATTCACAACCAAAACTTAAAACATTCATGACATATCGTTATGATCAATTTCAT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
67687712 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
*
67687777 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACAAAATTCCAAAATA-G-ACATAC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
67687840 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
**
67687905 TTGGACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
391 TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
** * * *
67687970 GGCCACGTGACCTGGCACACGCCCGTGTGTGCGACTCTGTGATCTGCCCAGGCTCATTTTGAAAT
456 GGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAAT
*
67688035 GGCCT
521 GGCTT
*
67688040 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTG-CCGTATAGGCAAAAATAGGCCATTTAG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
67688104 AAGGCC--AATGCCA--CTATAAGGGTCCT-CCTACAAGCATCAAAACGAATTCATTTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
*
67688164 AATTTTCAACCAATTCACAACCAAAACTGACAACATTCATGACATATCA-TATCATCAATTTCAT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
*
67688228 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATAAATGATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
* * * *
67688293 TAATCTCAATTTACCTCATTCACTCTCATGCTAACATATTACGATATTCCAAAATAGGCACAGAC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
*
67688358 CAAAACTTACCAAATTGACCAATTCATTTGGCCATTCAAAAGTGCATCAAAACATACCA--TTTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
67688421 TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
391 TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
* * *
67688486 GGCCACACGACCTGGCACACGCCCGTCTGTGCGACTATGTGATCTGCCCAGGCTCA-TTCCAAAT
456 GGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAAT
*
67688550 GGCCT
521 GGCTT
* * *
67688555 TCAAGCAACAAGGCTGAGACACACACCCGTGTCTCTGCCCGTATGGGCAAAAATAGGCCA--TAG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
67688618 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
*
67688683 AATCTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
*
67688748 GCTTATAATCCATAGCAAATCATGACATATTCTAAGCCAAAAATCATACCAAAATAC-TGATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
67688812 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
* * *
67688877 CAAAGCTTACCAAATTGACCAATTCAGTTGGCCATTCAAAAGTGCATCAAAACATATCATTTTTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
* * *
67688942 TTTGGACACAAAACATATGCCAAAATACATTCATGATCACATCCATAACCAAGCCAAAATTGACT
391 TTT-AACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACT
* * *
67689007 TGGCCATACGACCTGGCACACGCCCGTGTGTGCGACTCTGTGATCTGCCCA-GCTCATTTCGAAA
455 TGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAA
*
67689071 TGGCCT
520 TGGCTT
67689077 TC-AGCAACAAGGCTGAGACACACGCCCGTGTCCCTG-CCGTATGGGCAAAAATAGGCCATTTAG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
* *
67689140 AAGGCCATAATGCGACCCTAGAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
67689205 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
*
67689270 GCTTATAATCCACAGCAAATCAT-ACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
67689334 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATA-GCACATAC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
67689398 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCA-TTTTT
* *
67689463 TTTTGGACTCAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
390 TTTT-AACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
* * *
67689528 TTGGCCACACGACCTGGCACACGCCCGTGTGTACGACTATGTGATCTGCCCAGGTTCATTTCGAA
454 TTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAA
*
67689593 ATGGCCT
519 ATGGCTT
* * *
67689600 TCGAGCAACAA-GCTGAGACACATGCCCGTGTCCCTGCCTGTATGGGCAAAAATAAGCCATTTAG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
* *
67689664 AAGGCCATAATGCCA-CCTATAAGGGTCCTCCCTACAAGCATCAAAACAAATTCATCTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
* * * * *
67689728 AATTTTTAACCAATTCACAACCAAAACTTAAAACATTCATGACATATCGTTATGATCAATTTCGT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
67689793 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
* *
67689858 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACAAAATTCCAAAATAGACACATAC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
67689923 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
**
67689988 TTGGACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
391 TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
**
67690053 GGCCACGTGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTG-CCAGGCTCATTTCGAAAT
456 GGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAAT
67690117 GGCCTT
521 GG-CTT
* *
67690123 T-GAGCAACAGGGCTGAGACACACGCCCGTGTCCCTGCCAGTATGGGCAAAAATAGGCCATTTAG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
*
67690187 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAAGGAATTCATTTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
67690252 AATTTTCAACCAATTCACAACCAAAACTTACAA-ATTCATGACATATCATTATCATCAATTTCAT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
67690316 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCC-AAAATCATACCAAAATACATGATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
*
67690380 CAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
67690445 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATC-AAACATACCATTTTTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
67690509 TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
391 TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
* *
67690574 GGCCCCACGACCTGGCACATGCCCGTGTGTGCGACTATGTGATCTGA-CAGGCTCATTTCGAAAT
456 GGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAAT
67690638 GGCTT
521 GGCTT
* *
67690643 TCGAGC-ACAAGGCTGAGATACACGCCCATGTCCCTGCCCGTATGGGC-AAAATAGGCCATTTAG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
*
67690706 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAATGAATTCATTTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
* * *
67690771 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATGTCATTATCTTGAATTTCAT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
*
67690836 ACTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
67690901 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
*
67690966 CAAAACTTACCAAATTGACCAATTCACTTGGCCACTCAAAAGTGCATCAAAACATACCATTTTTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
*
67691031 TTTCACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
391 TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
67691096 GGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGT-ATTCTGACCAGGCTCA-TTCGAAA
456 GGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGA-TCTGACCAGGCTCATTTCGAAA
67691159 TGGCTT
520 TGGCTT
* * * *
67691165 TCGAGCAAGAAGGCTGAGATATACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCTATTTAG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
*
67691230 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAAGGAATTCATTTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
67691295 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
* *
67691360 GCTTATAATCCATAGCAAATCATGACATATTCTAAGCCAAAAATCATACCAAAATACTTGATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
* *
67691425 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACAAAATTCCAATATAGGCACATAC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
* *
67691490 CAAAGCTTACCAAATTGACCAATTCAGTTGGCCATTCAAAAGTGCATCAAAACATACCATATTTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCAT-TTTT
* * *
67691555 TTTTGGACACAAAACATATACCAAAATACATTCATGATCACATCCATAACCAAGCCAAAATGGAC
390 TTTT-AACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
* * *
67691620 TTGGCCACACGACCTGGCGCACGCCCGTGTGTGCGATTATGTGATCTAACCAGGCTCATTTCGAA
454 TTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAA
67691685 ATGGCTT
519 ATGGCTT
* *
67691692 TCGAGCAACAAGGCTGAGATACACGCCCGTGTCCCTGCCCGTATGGGAAAAAATAGGCCATTTAG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
* * *
67691757 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTAGAAGCATCAAAATGAATTTATTTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
* * * *
67691822 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATGAAGTCCTT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
*
67691887 TCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
*
67691952 TAATCTTAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
67692017 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
*
67692082 TTTCACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
391 TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
67692147 GGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGT-ATCTGACCAGGCTCATTTCGAAAT
456 GGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAAT
67692211 GGCTT
521 GGCTT
*
67692216 TCGAGCAA-AAGGCTGAG--ATA-GCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
*
67692277 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAATGAATTCATTTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
67692342 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
* * *
67692407 GCTTATAATCCATAGCAAATCATGACATATTCTAAGCCAAAAATCATACCAAAATACTTCATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
* *
67692472 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACAAAATTCCAATATAGGCACATAC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
* *
67692537 CAAAGCTTACCAAATTGACCAATTCAGTTGGCCATTCAAAAGTGCATCAAAACATACCATATTTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCAT-TTTT
* *
67692602 TTTTGGACACAAAACATATACCAAAATACATTCATGATCACATCCATAACCAAGCCAAAATTGAC
390 TTTT-AACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
* * * *
67692667 TTGGCCACACGACCTGGCGCACGTCCGTGTGTGCGATTATGTGATCTAACCAGGCTCATTTCGAA
454 TTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAA
*
67692732 ATTGCTT
519 ATGGCTT
* *
67692739 TCGAGCAACAAGGCTGAGATACACGCCCGTGT-CCTGCCCGTATGGGAAAAAATAGGCCATTTAG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
* *
67692803 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTAGAAGCATCAAAATGAATT-ATTTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
* *
67692867 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCA-TATTCAT-GATGTCC
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTA-TCATCAAT-TTC
* *
67692930 TTTCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATT
194 ATGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATT
67692995 CATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACAT
259 CATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACAT
*
67693060 ACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATAGCATTTT
324 ACCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTT
*
67693125 TTTTTAACACAAAACATATGCCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
389 TTTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAC
*
67693190 TTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAAGCTCATTTCGAA
454 TTGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAA
67693255 ATGGCTT
519 ATGGCTT
* * * *
67693262 TCGAGCAATAGGGCTGAGATACACGCCCGTGTCCCTACCCGTATGGGCAAAAATAGGCCATTTAG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
* *
67693327 AAGGCCATAATGCCACCCTATAATGGTCTTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
*
67693392 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGAAATATCATTATCATCAATTTCAT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
67693457 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
*
67693522 TAATCTCAATTTACCTCATTCACTCTTATGCTAACAT-TTACCAAATTCCAAAATAGGCTCATAC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
*
67693586 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACTTACCA-TTTTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
* *
67693650 TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAGGCCAAAATTGGCTT
391 TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
* *
67693715 GTCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGTCTCATTTCGAAAT
456 GGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAAT
67693780 GGCATT
521 GGC-TT
*
67693786 T-GAGCAACAAGGCTGAGACACACGCCCGTGTCTCTGCCCGTATGGGCAAAAATAGGCCATTTAG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
67693850 AAGGCCATAATGCCACCCTATAAGGGTCC-CCCTACAAGCATCAAAACGAATTCATTTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
67693914 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
67693979 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
67694044 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
* *
67694109 CAAAACTTACCAAATTGACCAATTCACTTGGTCATTCAAAAGTGCATCAAAACATACCAGTTTTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
* *
67694174 TTTAACACAAAACGTATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGAGTT
391 TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
** *
67694239 GGCCACACGACCTGGCACACGCTTGTGTGTGCGACTATGTGATCTAACCAGGCTCATTTCGAAAT
456 GGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAAT
67694304 GGCTT
521 GGCTT
* * * *
67694309 TCGAGCAACAAGGCTGAGATACACGCCCTTGTCCCTGCCCGTATGGGAAAAAATAGGCCATTTAT
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
* * *
67694374 AAGGCCATAATGCCACCCTATAAGGGTCCTCCTTAGAAGCATCAAAATGAATTCATTTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
* * * *
67694439 AATTTTCAACCAATTCACAACCAAAACTTACAACATTAATGACATATCATTGTCAT-GATTTCTT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
** * *
67694503 TATTCTAATCCATAGCAAATCATGACATATCATAAGCCAAAAATCATACCAAAATACATGATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
* *
67694568 TAATCTCAATTTCCCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACACAC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
67694633 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
*
67694698 TTTCACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
391 TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
67694763 GGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAAT
456 GGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAAT
67694828 GGCTT
521 GGCTT
* *
67694833 TCGAGCAA-AAGGGCTGAGATACACGCCCGTGTTCCTGCCCGTATGGGCAAAAATAGGCCATTTA
1 TCGAGCAACAA-GGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTA
* *
67694897 GAAGGTCATAATGCCACCCTATAAGGGTCTTCCCTACAAGCATCAAAACGAATTCATTTTGTACC
65 GAAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACC
* *
67694962 AAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGAAATATCATTATCATCAATTTCT
130 AAATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCA
67695027 TGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTC
195 TGCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTC
*
67695092 ATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATCGGCACATA
260 ATAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATA
67695157 CCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCA---TT
325 CCAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTT
*
67695219 TTTTAACACAAAACATATGCCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACT
390 TTTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACT
67695284 TGGCCACACGACCTGGCACACGCCC--GTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAA
455 TGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAA
*
67695347 TAGCTT
520 TGGCTT
* *
67695353 TCGAGCAA-AAGGCTGAGATACACGCCCGTGTTCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
* *
67695417 AAGGTCATAATGCCACCCTATAAGGGTCTTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
* *
67695482 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGAAATATCATTATCATCAATTTCTT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
* *
67695547 GTTTATAATCCATAGTAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
*
67695612 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATCGGCACATAC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
*
67695677 CAAAACTTACCAAATTGACCATTTCACTTGGCCATTCAAAAGTGCATCAAAACATACCA-TTTTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
**
67695741 TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCACT-ACCAAGCCAAAATTGGGT
391 TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCA-TAACCAAGCCAAAATTGACT
* *
67695805 TGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTGATTTCAAAA
455 TGGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAA
67695870 TGGCTT
520 TGGCTT
* *
67695876 TTGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTACCCGTATGGGCAAAAATAGGCCATTTAG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
*
67695941 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATTAAAACGAATTCATTTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
* * *
67696006 AATTTTCGACCAATTCACAAACAAAACTTACAACATTCATGACATATCATTATCAACAATTTCAT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
*
67696071 GCTTATAATCCATAGCAAATCAAGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
* * *
67696136 CAATCTCAATTTACCTCATTCACTCTTGTGCTCACATATTACCAAATTCCAAAATAGGCACATAC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
*
67696201 CAAAACTTACCAAATTGACCAATTCACTTGGTCATTCAAAAGTGCATCAAAACATACCA--TTTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
*
67696264 TTTAACACAAAATATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
391 TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
*
67696329 GGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCCCATTTCGAAAT
456 GGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAAT
*
67696394 GGCCT
521 GGCTT
* *
67696399 TCGAGCAACTAGGCTGAGACACACGCCCATGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
1 TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
* **
67696464 AAGGCCATAATGCCGCCCTATAAGGGTCCTCCCTACAAGCATCAAAATTAATTCATTTTGTACCA
66 AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
* *
67696529 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCAT-GATTTCTT
131 AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
* * *
67696593 TCTTATAATCCGTAGCAAATCATGACATATCATAAGCCAAAAATCATACCAAAATACATGATTCA
196 GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
* * * *
67696658 TAATCTCAATTTCCCTCATTCACTCTTATGCTAACATGTTGCCAAATTCCAAAATAGGCACATTC
261 TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
*
67696723 CAAAACTTACCAGATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCA-TTTTT
326 CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
*
67696787 TTTAACACAAAACATATGCCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
391 TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
67696852 GGCCACACGACCTGGCACACGC
456 GGCCACACGACCTGGCACACGC
67696874 ACATGTCCCT
Statistics
Matches: 9889, Mismatches: 448, Indels: 147
0.94 0.04 0.01
Matches are distributed among these distances:
514 9 0.00
515 45 0.00
516 278 0.03
517 78 0.01
518 89 0.01
519 688 0.07
520 603 0.06
521 519 0.05
522 1359 0.14
523 1615 0.16
524 2160 0.22
525 930 0.09
526 655 0.07
527 861 0.09
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (525 bp):
TCGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAG
AAGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCA
AATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCAT
GCTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCA
TAATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATAC
CAAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTT
TTTAACACAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT
GGCCACACGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAAT
GGCTT
Found at i:67699498 original size:525 final size:525
Alignment explanation
Indices: 67696999--67700754 Score: 6524
Period size: 524 Copynumber: 7.2 Consensus size: 525
67696989 AATTCACAAC
* *
67696999 CAAAACATATACCAAAATTCATTCATTATCACATCCATAACCAAGCCAAAATTTACTTGGCCACA
1 CAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACA
* **
67697064 TGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCTTAGGCTCATTTCGAAATGGCCTTC
66 CGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTC
* * *
67697129 GAGCAACAAAGCTGAGACACATGCCCGTGTCCCTGCCCGTATGGGCAAAAATTGGCCATTTAGAA
131 GAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAA
* *
67697194 GGCCATAATGCCACCCTATAAGGGTCTTACCTACAAGCATCAAAACGAATTCATTTTGTACCAAA
196 GGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCAAA
67697259 TTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAA-TTCATGC
261 TTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGC
*
67697323 -TGTAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATA
326 TTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATA
* *
67697387 ATCTCAATTTACCTCATTCACTCTTATGCTAACATTTTACCAAATTCCAAAATAGGCTCATACCA
391 ATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCA
*
67697452 AAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACTTACCA-TTTTTTT
456 AAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTT
67697516 TAACA
521 TAACA
* * *
67697521 CAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAGGCCAAAATTGGCTTGTCCACA
1 CAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACA
* * * *
67697586 CGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGTCTCATTTCGAAATGGCATTT
66 CGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTC
*
67697651 GAGCAACAAGGCTGAGACACACGCCCGTGTCTCTGCCCGTATGGGCAAAAATAGGCCATTTAGAA
131 GAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAA
*
67697716 GGCCATAATGCCACCCTATAAGGGTCCCCCCTACAAGCATCAAAACGAATTCATTTTGTACCAAA
196 GGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCAAA
67697781 TTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGC
261 TTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGC
* *
67697846 TTATAATCCATAGCAAATCATGACATATCCTAAGGCAAAAATCATACCAAAATACATGATTCACA
326 TTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATA
67697911 ATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCA
391 ATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCA
* *
67697976 AAACTTACCAAATAGACCAATTCACTTGGCCATTCAAAATTGCATCAAAACATACCATTTTTTTA
456 AAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTT-
67698041 TTAACA
520 TTAACA
* * *
67698047 CAAAATATATTCCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGATTTGGCCACA
1 CAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACA
* *
67698112 TGACCTGGCACACGCCCGTGTGTGCAACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTC
66 CGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTC
* * *
67698177 GAACAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCATATGGGCAAAAATAGGCAATTTAGAA
131 GAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAA
*
67698242 GGCCATAATGCCACCCTATAAGGGTCCTCCGTACAAGCATCAAAACGAATTCATTTTGTACCAAA
196 GGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCAAA
67698307 TTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGC
261 TTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGC
67698372 TTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATA
326 TTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATA
*
67698437 ATCTCAATTTACCTAATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCA
391 ATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCA
67698502 AAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCAATTTTTTT
456 AAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACC-ATTTTTTT
*
67698567 TGAACA
520 TTAACA
*
67698573 CAAAACATATACCAAAATTCATTCATGATCACATCCA-AACCAAGCCAAAATTGACTTAGCCACA
1 CAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACA
* * * * *
67698637 CGACCTGGCACACACCCGTGTGTACGACTATGTGAT-TGCCCAAGATCATTTCGAAATGGTCTTC
66 CGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTC
* *
67698701 GAGCAACAAGGCTGAGACACATGCCCGTGTCCCTGCCTGTATGGGCAAAAATAGGCCATTTAGAA
131 GAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAA
* *
67698766 GGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATCTTGTACCGAA
196 GGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCAAA
* * * * *
67698831 TTTTTAACCAATTCACAACCAAAACTTAAAACATTCATGACAAATCGTTATCATCAATTTTATGC
261 TTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGC
67698896 TTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATA
326 TTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATA
*
67698961 ATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGACACATACCA
391 ATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCA
67699026 AAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTT
456 AAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTT
*
67699091 TGGACA
521 T-AACA
*
67699097 CAAAACATATGCCAAAATTCATTCATGATCACATCCATAACCAAGCC-AAATTGACTTGGCCACA
1 CAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACA
* *
67699161 TGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCAAAATGGCCTTC
66 CGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTC
*
67699226 GA-CAAACAAGGCTGAGACACACGCCCGTGTCCTTGCCCGTATGGGCAAAAATAGGCCATTTAGA
131 GAGC-AACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGA
* * *
67699290 AGGCCATAATGCCACCCTATATGGGTCCTCCCTGCAAGCATCAAAATGAATTCATTTTGTACCAA
195 AGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCAA
* *
67699355 ATTTTCAACCAATTCACAACCAAAACTTACAACATTCATAACATATCATTATCATGAATTTCATG
260 ATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATG
67699420 CTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCAT
325 CTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCAT
67699485 AATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACC
390 AATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACC
**
67699550 AAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATATGA-TTTTTT
455 AAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTT
67699614 TTAACA
520 TTAACA
67699620 CAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACA
1 CAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACA
* * *
67699685 CGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGACCAGGCTTATTTCGAAATGGCTTTC
66 CGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTC
* * * *
67699750 AAGCCATAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCACAAATAGGCCATTTAGAA
131 GAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAA
* *
67699815 GACCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAATGAATTCATTTTGTACCAAA
196 GGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCAAA
67699880 TTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGC
261 TTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGC
* *
67699945 TTATAATCCATAGCAAATCATGACATATCCTAAGGCAAAAATCATACCAAAATACATGATTCACA
326 TTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATA
67700010 ATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCA
391 ATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCA
* *
67700075 GAACTTACCAAATTGACCAACTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTA
456 AAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTT-
67700140 TTAACA
520 TTAACA
* *
67700146 CAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCGAAAATTGACTTGGCCATA
1 CAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACA
*
67700211 -GAACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCTAGGCTCATTTCGAAATGGCCTT
66 CG-ACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTT
* * *
67700275 CGAGCAACAAAGCTGAGACACATGCCCGTGTCCCTGCCTGTATGGGCAAAAATAGGCCATTTAGA
130 CGAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGA
* * *
67700340 AGGCCATAATGCCACCCTATAAGGGTCTTCCCTACAAGCATCAAAATGAATTCATTTTGTACCGA
195 AGGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCAA
* *
67700405 ATTTTCAATCAATTCACAACCAAAACTTACAACATTCATGACATATCTTTATCATCAATTTCATG
260 ATTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATG
*
67700470 C-TGTAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCAT
325 CTTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCAT
*
67700534 AATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACGTACC
390 AATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACC
67700599 AAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTT
455 AAAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTT
67700664 ATTAACA
520 -TTAACA
* * *
67700671 CAAAACATATACGAAAATTCATTCATGATCACATCCATAACCAAGCGAAAATTGACATGGCCACA
1 CAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACA
67700736 CGACCTGGCACACGCCCGT
66 CGACCTGGCACACGCCCGT
67700755 TGTAACACCC
Statistics
Matches: 3063, Mismatches: 156, Indels: 27
0.94 0.05 0.01
Matches are distributed among these distances:
522 298 0.10
523 65 0.02
524 1107 0.36
525 739 0.24
526 846 0.28
527 8 0.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (525 bp):
CAAAACATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACA
CGACCTGGCACACGCCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTC
GAGCAACAAGGCTGAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAA
GGCCATAATGCCACCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCAAA
TTTTCAACCAATTCACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGC
TTATAATCCATAGCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATA
ATCTCAATTTACCTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCA
AAACTTACCAAATTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTT
TAACA
Found at i:67702610 original size:27 final size:27
Alignment explanation
Indices: 67702549--67702609 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
67702539 GGGCAAAATG
67702549 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* *
67702576 GTAATTTTACCCTACAGGGGTATTT-A
1 GTAATTTTACCCCACAAGGGTATTTCA
67702602 GTAATTTT
1 GTAATTTT
67702610 TCAAACCATG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 9 0.28
27 23 0.72
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.39
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:67702623 original size:53 final size:54
Alignment explanation
Indices: 67702565--67702690 Score: 132
Period size: 54 Copynumber: 2.4 Consensus size: 54
67702555 TTACCCCACA
** *
67702565 AGGGTATTTCAGTAATTTTACCCTAC-AGGGGTA-TTTAGTAATTTTTCAAA-CC
1 AGGGTATTTCAGTAATTTTA-CAAACTAGGGGTATTTTAGTAATTTTACAAATCC
** * **
67702617 ATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
*
67702672 AGGGTATTTCTGTAATTTT
1 AGGGTATTTCAGTAATTTT
67702691 GTAAATCGAG
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
52 4 0.07
53 24 0.40
54 31 0.52
55 1 0.02
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.43
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
Found at i:67702632 original size:27 final size:27
Alignment explanation
Indices: 67702590--67702668 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
67702580 TTTTACCCTA
* *
67702590 CAGGGGTA-TTTAGTAATTTTTCAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
67702616 CATGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
67702643 TAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
67702669 TTGAGGGTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 7 0.15
27 40 0.85
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:67702676 original size:27 final size:27
Alignment explanation
Indices: 67702619--67702704 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
67702609 TTCAAACCAT
*
67702619 GGGTATTTTGGTAATTTTACAAACT-A
1 GGGTATTTTGGTAATTTTACAAATTGA
67702645 GGGGTATTTTGGTAATTTTACAAATTGA
1 -GGGTATTTTGGTAATTTTACAAATTGA
** *
67702673 GGGTATTTCT-GTAATTTTGTAAATCGA
1 GGGTATTT-TGGTAATTTTACAAATTGA
67702700 GGGTA
1 GGGTA
67702705 AAATAGTAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
27 51 0.96
28 2 0.04
ACGTcount: A:0.28, C:0.06, G:0.24, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATTGA
Found at i:67702713 original size:27 final size:26
Alignment explanation
Indices: 67702683--67702838 Score: 134
Period size: 27 Copynumber: 5.8 Consensus size: 26
67702673 GGGTATTTCT
*
67702683 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAA-A
* * *
67702710 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAA-A
* * *
67702737 GTAATTCTATAAATCG-CGGTAAAAC
1 GTAATTCTGTAAATCGAGGGTAAAAA
* * *
67702762 GATAATTTTTTAAATCGAGGGTAAAACG
1 G-TAATTCTGTAAATCGAGGGTAAAA-A
* * *
67702790 GTAATTATGTAAATCGGGGGTAAAAC
1 GTAATTCTGTAAATCGAGGGTAAAAA
*
67702816 GATAATTCTGTAAATCGGGGGTA
1 G-TAATTCTGTAAATCGAGGGTA
67702839 CTTTGGTAAT
Statistics
Matches: 106, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
25 1 0.01
26 19 0.18
27 85 0.80
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.29
Consensus pattern (26 bp):
GTAATTCTGTAAATCGAGGGTAAAAA
Found at i:67702741 original size:54 final size:53
Alignment explanation
Indices: 67702683--67702831 Score: 156
Period size: 53 Copynumber: 2.8 Consensus size: 53
67702673 GGGTATTTCT
* * *
67702683 GTAATTTTGTAAATCGAGGGTAAAA-TAGTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTATGTAAATCG-GGGTAAAACGA-TAATTCTGTAAATCAAGAGAAAAACA
* * * * * * * * *
67702737 GTAATTCTATAAATCGCGGTAAAACGATAATTTTTTAAATCGAGGGTAAAACG
1 GTAATTATGTAAATCGGGGTAAAACGATAATTCTGTAAATCAAGAGAAAAACA
67702790 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATC
1 GTAATTATGTAAATC-GGGGTAAAACGATAATTCTGTAAATC
67702832 GGGGGTACTT
Statistics
Matches: 77, Mismatches: 16, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
53 39 0.51
54 38 0.49
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.30
Consensus pattern (53 bp):
GTAATTATGTAAATCGGGGTAAAACGATAATTCTGTAAATCAAGAGAAAAACA
Found at i:67702832 original size:54 final size:54
Alignment explanation
Indices: 67702683--67702838 Score: 163
Period size: 54 Copynumber: 2.9 Consensus size: 54
67702673 GGGTATTTCT
* * * * * * *
67702683 GTAATTTTGTAAATCGAGGGTAAAA-TAGTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTATGTAAATCGGGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAACA
* * * * * *
67702737 GTAATTCTATAAATC-GCGGTAAAACGATAATTTTTTAAATCGAGGGTAAAACG
1 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACA
*
67702790 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGAGGGTA
67702839 CTTTGGTAAT
Statistics
Matches: 82, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
53 39 0.48
54 43 0.52
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.29
Consensus pattern (54 bp):
GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACA
Found at i:67702916 original size:26 final size:27
Alignment explanation
Indices: 67702844--67702932 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
67702834 GGGTACTTTG
*
67702844 GTAATTTTACAAGTCGAA-GGTATTTCA
1 GTAATTTTACAAATC-AAGGGTATTTCA
*
67702871 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCAAGGGTATTTCA
* *
67702898 GTATTTTTACAAAT-AAGGGTATTTCG
1 GTAATTTTACAAATCAAGGGTATTTCA
67702924 GTAATTTTA
1 GTAATTTTA
67702933 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 19 0.35
27 36 0.65
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCAAGGGTATTTCA
Found at i:67704938 original size:523 final size:525
Alignment explanation
Indices: 67703951--67708673 Score: 8150
Period size: 526 Copynumber: 9.0 Consensus size: 525
67703941 GGGTGTTACA
* *
67703951 CCCGTGTGTACGACTATGTGATCTGCCCAGGATCATTTCGAAATGGCCTTCGAGCAACAAGGCTG
1 CCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTCGAGCAACAAGGCTG
*
67704016 AGACACATGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCAC
66 AGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCAC
* * * * *
67704081 ACTATAAGGGTCCTTCCTACAAGCATCAAAACGAATTCATCTTGTACCAAATTTTTAACCAATTC
131 CCTATAAGGGTCCTCCCTACAAGCATCAAAATGAATTCATTTTGTACCAAATTTTCAACCAATTC
* * * *
67704146 ACAACCAAAACTTAAAACATTTATGACAAAT-AGTTATCATCAATTTCATGCTTATAATCCGTAG
196 ACAACCAAAACTTACAACATTCATGACATATCA-TTATCATCAATTTCATGCTTATAATCCATAG
* *
67704210 AAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATAATCTCAATTTAAC
260 CAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATAATCTCAATTTACC
*
67704275 TCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGACACATACCAAAACTTACCAAAT
325 TCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAAT
* *
67704340 TGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTTTGGAGACAAAACA
390 TGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTTT-AACACAAAACA
* * * *
67704405 TATACCAAAATTCATTCATGATCACATCCATAACAAAACCAAAGTTGACTTGGCCACATGACCTG
454 TATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACACGACCTG
67704470 GCACACG
519 GCACACG
* * * *
67704477 CCCGTGTGTGCGACTATGTGATCTACCTAGGCTCATTTTGAAATGGCCTTCGAGCAACAAAGCTG
1 CCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTCGAGCAACAAGGCTG
*
67704542 AGACACATGCCCGTGTCCCTGCCCGTATGGGCAAAAAT-GGCCATTTAGAAGGCCATAATGCCAC
66 AGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCAC
*
67704606 CCTATAAGGGT-CT-CCTACAAGCATCAAAACGAATTCATTTTGTACCAAATTTTCAACCAATTC
131 CCTATAAGGGTCCTCCCTACAAGCATCAAAATGAATTCATTTTGTACCAAATTTTCAACCAATTC
67704669 ACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGCTTATAATCCATAGC
196 ACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGCTTATAATCCATAGC
67704734 AAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATAATCTCAATTTACCT
261 AAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATAATCTCAATTTACCT
*
67704799 CATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATA
326 CATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATT
* *
67704864 GACCAATTCACTTGGCCATTCAAAATTGCCTCAAAACATACCATTTTTTTATTAACACAAAACAT
391 GACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTT-TTAACACAAAACAT
* *
67704929 ATTCCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACATGACCTGG
455 ATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACACGACCTGG
67704994 CACACG
520 CACACG
* *
67705000 CCCGTGTGTGCAACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTCGAACAACAAGGCTG
1 CCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTCGAGCAACAAGGCTG
* *
67705065 AGACACACGCCCGTGTCCCTGCCCATATGGGCAAAAATAGGCAATTTAGAAGGCCATAATGCCAC
66 AGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCAC
* *
67705130 CCTATAAGGGTCCTCCGTACAAGCATCAAAACGAATTCATTTTGTACCAAATTTTCAACCAATTC
131 CCTATAAGGGTCCTCCCTACAAGCATCAAAATGAATTCATTTTGTACCAAATTTTCAACCAATTC
67705195 ACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGCTTATAATCCATAGC
196 ACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGCTTATAATCCATAGC
*
67705260 AAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATCATTCATAATCTCAATTTACCT
261 AAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATAATCTCAATTTACCT
*
67705325 AATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATT
326 CATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATT
67705390 GACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCAATTTTTTTTTTGAACACAAAAC
391 GACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACC-A-TTTTTTTTT-AACACAAAAC
* * *
67705455 ATATGCCAAAATTCATTCATGATCACATCCAAAACCAAGCCAAAATTGACTTAGCCACACGACCT
453 ATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACACGACCT
*
67705520 GGCACACA
518 GGCACACG
* * *
67705528 CCCGTGTGTACGACTATGTGATCTGCCCAAGATCATTTCGAAATGGCCTTCGAGCAACAAGGCTG
1 CCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTCGAGCAACAAGGCTG
* *
67705593 AGACACATGCCCGTGTCCCTGCCTGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCAC
66 AGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCAC
* *
67705658 CCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCA-TTTGTACCGAATTTT-AACCAATTC
131 CCTATAAGGGTCCTCCCTACAAGCATCAAAATGAATTCATTTTGTACCAAATTTTCAACCAATTC
* * * *
67705721 ACAACCAAAACTTAAAACATTCATGACAAATCGTTATCATCAATTTTATGCTTATAATCCATAGC
196 ACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGCTTATAATCCATAGC
67705786 AAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATAATCTCAATTTACCT
261 AAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATAATCTCAATTTACCT
*
67705851 CATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGACACATACCAAAACTTACCAAATT
326 CATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATT
* **
67705916 GACCAATTCACTTGGCCATTCAAAAGTGCAACAAAACATACCATTTTTTTTGGACACAAAACATA
391 GACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTTTAACACAAAACATA
* * *
67705981 TGCCAAAATTCATTCATGATCACATCCATAACCAAGCCAAATTTGACTTGGCCACATGACCTGGC
456 TACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACACGACCTGGC
67706046 ACACG
521 ACACG
*
67706051 CCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCAAAATGGCCTTCGA-CAAACAAGGCT
1 CCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTCGAGC-AACAAGGCT
67706115 GAGACACACGCCCGTGT-CCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCA
65 GAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCA
* *
67706179 CCCTATATGGGTCCTCCCTGCAAGCATCAAAATGAATTCATTTTGTACCAAATTTTCAACCAATT
130 CCCTATAAGGGTCCTCCCTACAAGCATCAAAATGAATTCATTTTGTACCAAATTTTCAACCAATT
* *
67706244 CACAACCAAAACTTACAACATTCATAACATATCATTATCATGAATTTCATGCTTATAATCCATAG
195 CACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGCTTATAATCCATAG
67706309 CAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATAATCTCAATTTACC
260 CAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATAATCTCAATTTACC
67706374 TCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAAT
325 TCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAAT
**
67706439 TGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATATGA-TTTTTTTTAACACAAAACAT
390 TGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTTTAACACAAAACAT
67706503 ATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTT-GCCACACGACCTGG
455 ATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACACGACCTGG
67706567 CACACG
520 CACACG
* * * * * *
67706573 CCCGTGTGTGCGACTATGTGATCTGACCAGGCTTATTTCGAAATGGCTTTCAAGCCATAAGGCTG
1 CCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTCGAGCAACAAGGCTG
*
67706638 AGACACACGCCCGTGTCCCTGCCCGTATGGGC-AAAATAGGCCATTTAGAAGACCATAATGCCAC
66 AGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCAC
67706702 CCTATAAGGGTCCTCCCTACAAGCATCAAAATGAATTCATTTTGTACCAAATTTTCAACCAATTC
131 CCTATAAGGGTCCTCCCTACAAGCATCAAAATGAATTCATTTTGTACCAAATTTTCAACCAATTC
67706767 ACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGCTTATAATCCATAGC
196 ACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGCTTATAATCCATAGC
67706832 AAATCATGACATATCCTAAG-CAAAAATCATACCAAAATACATGATTCATAATCTCAATTTACCT
261 AAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATAATCTCAATTTACCT
67706896 CATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATT
326 CATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATT
**
67706961 GACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATATGA--TTTTTTTAACACAAAACATA
391 GACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTTTAACACAAAACATA
67707024 TACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACACGACCTGGC
456 TACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACACGACCTGGC
67707089 ACACG
521 ACACG
* * * * *
67707094 CCCGTGTGTGCGACTATGTGATCTGACCAGGCTTATTTCGAAATGGCTTTCAAGCCAA-AAAGCT
1 CCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTCGAG-CAACAAGGCT
*
67707158 GAGACACACGCCCGTGTCCTTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCA
65 GAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCA
* *
67707223 CCCTATATGGGTCCTCCCTGCAAGCATCAAAATGAATTCATTTTGTACCAAATTTTCAACCAATT
130 CCCTATAAGGGTCCTCCCTACAAGCATCAAAATGAATTCATTTTGTACCAAATTTTCAACCAATT
* * *
67707288 CACAACCAAAACTTACAATATTCATAACATATCATTATCATGAATTTCATGCTTATAATCCATAG
195 CACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGCTTATAATCCATAG
67707353 CAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATAATCTCAATTTACC
260 CAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATAATCTCAATTTACC
67707418 TCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAAT
325 TCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAAT
**
67707483 TGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATATGA-TTTTTTTTAACACAAAACAT
390 TGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTTTAACACAAAACAT
67707547 ATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACACGACCTGG
455 ATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACACGACCTGG
67707612 CACACG
520 CACACG
* * * * * *
67707618 CCCGTGTGTGCGACTATGTGATCTGACCAGGCTTATTTCGAAATGGCTTTCAAGCCATAAGGCTG
1 CCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTCGAGCAACAAGGCTG
* *
67707683 AGACACACGCCCGTGTCCCTGCCCGTATGGGCACAAATAGGCCATTTAGAAGACCATAATGCCAC
66 AGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCAC
67707748 CCTATAAGGGTCCTCCCTACAAGCATCAAAATGAATTCATTTTGTACCAAATTTTCAACCAATTC
131 CCTATAAGGGTCCTCCCTACAAGCATCAAAATGAATTCATTTTGTACCAAATTTTCAACCAATTC
67707813 ACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGCTTATAATCCATAGC
196 ACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGCTTATAATCCATAGC
* *
67707878 AAATCATGACATATCCTAAGGCAAAAATCATACCAAAATACATGATTCACAATCTCAATTTACCT
261 AAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATAATCTCAATTTACCT
* *
67707943 CATTCACTCTTATGCTAACATATTACGAAATTCCAAAATAGGCACATACCAGAACTTACCAAATT
326 CATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATT
*
67708008 GACCAACTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTATTAACACAAAACAT
391 GACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTT-TTAACACAAAACAT
* *
67708073 ATACCAAAATTCATTCATGATCACATCCATAACCAAGCGAAGATTGACTTGGCCACA-GAACCTG
455 ATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACACG-ACCTG
67708137 GCACACG
519 GCACACG
* *
67708144 CCCGTGTGTGCGACTATGTGATCTGCCTAGGCTCATTTCGAAATGGCCTTCGAGCAACAAAGCTG
1 CCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTCGAGCAACAAGGCTG
* *
67708209 AGACACATGCCCGTGTCCCTGCCTGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCAC
66 AGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCAC
* * *
67708274 CCTATAAGGGTCTTCCCTACAAGCATCAAAATGAATTCATTTTGTACCGAATTTTCAATCAATTC
131 CCTATAAGGGTCCTCCCTACAAGCATCAAAATGAATTCATTTTGTACCAAATTTTCAACCAATTC
* *
67708339 ACAACCAAAACTTACAACATTCATGACATATCTTTATCATCAATTTCATGC-TGTAATCCATAGC
196 ACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGCTTATAATCCATAGC
67708403 AAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATAATCTCAATTTACCT
261 AAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATAATCTCAATTTACCT
*
67708468 CATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACGTACCAAAACTTACCAAATT
326 CATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATT
67708533 GACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTATTAACACAAAACAT
391 GACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTT-TTAACACAAAACAT
* * *
67708598 ATACGAAAATTCATTCATGATCACATCCATAACCAAGCGAAAATTGACATGGCCACACGACCTGG
455 ATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACACGACCTGG
67708663 CACACG
520 CACACG
67708669 CCCGT
1 CCCGT
67708674 TGTAACACCC
Statistics
Matches: 4012, Mismatches: 162, Indels: 47
0.95 0.04 0.01
Matches are distributed among these distances:
520 69 0.02
521 263 0.07
522 530 0.13
523 854 0.21
524 789 0.20
525 318 0.08
526 928 0.23
527 17 0.00
528 244 0.06
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (525 bp):
CCCGTGTGTGCGACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTCGAGCAACAAGGCTG
AGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCAC
CCTATAAGGGTCCTCCCTACAAGCATCAAAATGAATTCATTTTGTACCAAATTTTCAACCAATTC
ACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGCTTATAATCCATAGC
AAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATAATCTCAATTTACCT
CATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATT
GACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTTTAACACAAAACATA
TACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACACGACCTGGC
ACACG
Found at i:67710498 original size:27 final size:27
Alignment explanation
Indices: 67710468--67710529 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
67710458 GGGCAAAATG
67710468 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
67710495 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
67710522 GTAATTTT
1 GTAATTTT
67710530 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:67710542 original size:27 final size:27
Alignment explanation
Indices: 67710509--67710588 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
67710499 TTTTACCCTA
* *
67710509 CAGGGGTATTTTAGTAATTTTTCAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
67710536 CATGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
67710563 TAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
67710589 TTGAGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:67710543 original size:54 final size:54
Alignment explanation
Indices: 67710484--67710610 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
67710474 TTACCCCACA
** *
67710484 AGGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGTATTTCAGTAATTTTA-CAAACTAGGGGTATTTTAGTAATTTTACAAATCC
** * **
67710537 ATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
*
67710592 AGGGTATTTCTGTAATTTT
1 AGGGTATTTCAGTAATTTT
67710611 GTAAATCGAG
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.07
54 56 0.92
55 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
Found at i:67710596 original size:27 final size:28
Alignment explanation
Indices: 67710510--67710622 Score: 117
Period size: 27 Copynumber: 4.1 Consensus size: 28
67710500 TTTACCCTAC
* * *
67710510 AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATCG
* *
67710537 ATGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGGTATTTTGGTAATTTTACAAATCG
*
67710564 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTTACAAATCG
**
67710592 A-GGGTATTTCT-GTAATTTTGTAAATCG
1 AGGGGTATTT-TGGTAATTTTACAAATCG
67710619 AGGG
1 AGGG
67710623 TAAAATAGTA
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 69 0.95
28 4 0.05
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACAAATCG
Found at i:67710633 original size:27 final size:26
Alignment explanation
Indices: 67710603--67710759 Score: 143
Period size: 27 Copynumber: 5.8 Consensus size: 26
67710593 GGGTATTTCT
*
67710603 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAA-A
* * *
67710630 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAA-A
* * *
67710657 GTAATTCTATAAATCGACGGTAAAAC
1 GTAATTCTGTAAATCGAGGGTAAAAA
* * *
67710683 GATAATTTTTTAAATCGAGGGTAAAACG
1 G-TAATTCTGTAAATCGAGGGTAAAA-A
* * *
67710711 GTAATTATGTAAATCGGGGGTAAAAC
1 GTAATTCTGTAAATCGAGGGTAAAAA
*
67710737 GATAATTCTGTAAATCGGGGGTA
1 G-TAATTCTGTAAATCGAGGGTA
67710760 CTTTGGTAAT
Statistics
Matches: 108, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.02
27 105 0.97
28 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (26 bp):
GTAATTCTGTAAATCGAGGGTAAAAA
Found at i:67710753 original size:54 final size:54
Alignment explanation
Indices: 67710603--67710759 Score: 172
Period size: 54 Copynumber: 2.9 Consensus size: 54
67710593 GGGTATTTCT
* * * * * *
67710603 GTAATTTTGTAAATCGAGGGTAAAA-TAGTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTATGTAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAACA
* * * * * *
67710657 GTAATTCTATAAATCGACGGTAAAACGATAATTTTTTAAATCGAGGGTAAAACG
1 GTAATTATGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACA
* *
67710711 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 GTAATTATGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
67710760 CTTTGGTAAT
Statistics
Matches: 84, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
54 83 0.99
55 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (54 bp):
GTAATTATGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACA
Found at i:67710786 original size:27 final size:27
Alignment explanation
Indices: 67710765--67710854 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
67710755 GGGTACTTTG
*
67710765 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
67710792 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
67710819 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
67710846 GTAATTTTA
1 GTAATTTTA
67710855 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:67710806 original size:54 final size:54
Alignment explanation
Indices: 67710748--67710854 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
67710738 ATAATTCTGT
* * *
67710748 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
67710802 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
67710855 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:67710868 original size:27 final size:27
Alignment explanation
Indices: 67710765--67710869 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
67710755 GGGTACTTTG
* *
67710765 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
67710792 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
67710819 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
67710846 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
67710870 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:67713109 original size:524 final size:526
Alignment explanation
Indices: 67711873--67713943 Score: 3589
Period size: 524 Copynumber: 3.9 Consensus size: 526
67711863 GGGTGTTACA
* * *
67711873 CCCGTGTGTACGACTATGTGATCTGCCCAGGATCATTTCGAAATGGCCTTCGAGCAACAAGGCTG
1 CCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAATGGCCTTCGAGCAACAAGGCTG
*
67711938 AGACACATGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCA-
66 AGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCAC
* * *
67712002 CACTATAAGGGTCCTTCCTACAAGCATCAAAACGAATTCATCTTGTACCAAATTTTTAACCAATT
131 CA-TATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCAAATTTTCAACCAATT
* * * *
67712067 CACAACCAAAACTTAAAACATTTATGACAAAT-AGTTATCATCAATTTCATGCTTATAATCCGTA
195 CACAACCAAAACTTACAACATTCATGACATATCA-TTATCATCAATTTCATGCTTATAATCCATA
* * *
67712131 GAAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCATAATCTCAATTTAA
259 GCAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCACAATCTCAATTTAC
*
67712196 CTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGACACATACCAAAACTTACCAAA
324 CTCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAA
* *
67712261 TTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTTTGGAGACAAAAC
389 TTGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTTTGAACACAAAAC
* * *
67712326 ATATACCAAAATTCATTCATGATCACATCCATAACAAAACCAAAGTTGACTTGGCCACATGACCT
454 ATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACATGACCT
67712391 GGCACACG
519 GGCACACG
* *
67712399 CCCGTGTGTGCGACTATGTGATCT-ACCTAGGCTCATTTTGAAATGGCCTTCGAGCAACAAAGCT
1 CCCGTGTGTGCGACTATGTGATCTGACC-AGGCTCATTTCGAAATGGCCTTCGAGCAACAAGGCT
* *
67712463 GAGACACATGCCCGTGTCCCTGCCCGTATGGGAAAAAATAGGCCATTTAGAAGGCCATAATGCCA
65 GAGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCA
*
67712528 CCCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCAAATTTTCAACCAATT
130 CCATATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCAAATTTTCAACCAATT
* *
67712593 CTCAACCAAAACTTACAACATTTATGACATATCATTATCATCAATTTCATGCTTATAATCCATAG
195 CACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGCTTATAATCCATAG
67712658 CAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCACAATCTCAATTTACC
260 CAAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCACAATCTCAATTTACC
*
67712723 TCATTCACTCTTATGCTAACATATTACCAAATTCCAATATAGGCACATACCAAAACTTACCAAAT
325 TCATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAAT
* *
67712788 AGACCAATTCACTTGGCCATTCAAAATTGCATCAAAACATACCA-TTTTTTTT-AACACAAAACA
390 TGACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTTTGAACACAAAACA
* *
67712851 TATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACACGACCTA
455 TATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACATGACCTG
*
67712916 GAACACG
520 GCACACG
* * *
67712923 CCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAATGGCTTTTGAGCGACAAGGCTG
1 CCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAATGGCCTTCGAGCAACAAGGCTG
67712988 AGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCAC
66 AGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCAC
67713053 CATATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCAAATTTTCAACCAATTC
131 CATATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCAAATTTTCAACCAATTC
*
67713118 ACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGCTTATAATCCGTAGC
196 ACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGCTTATAATCCATAGC
*
67713183 AAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACACGATTCACAATCTCAATTTACCT
261 AAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCACAATCTCAATTTACCT
67713248 CATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATT
326 CATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATT
* * *
67713313 GACCAATTCACTTGGCCATTGAAAAGTGCATAAAAACATACCA-TTTTTTTT-AACGCAAAACAT
391 GACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTTTGAACACAAAACAT
67713376 ATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACATGACCTGG
456 ATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACATGACCTGG
67713441 CACACG
521 CACACG
* * *
67713447 CCCGTGTGTGCAACTATGTGATCTGCCCAGGCTCATTTCGAAATGGCCTTTGAGCAACAAGGCTG
1 CCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAATGGCCTTCGAGCAACAAGGCTG
*
67713512 AGACACACGCCCGTGTCCCTGCCCATATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCAC
66 AGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCAC
*
67713577 CCTATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCAAATTTTCAACCAATTC
131 CATATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCAAATTTTCAACCAATTC
*
67713642 ACAACCAAAACTTACAACATTCATAACATATCATTATCATCAATTTCATGCTTATAATCCATAGC
196 ACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGCTTATAATCCATAGC
* *
67713707 AAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATTATTCATAATCTCAATTTACCT
261 AAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCACAATCTCAATTTACCT
*
67713772 CATTCACTCTTATGCTAACATATTACCAAATTCAAAAATAGGCACATACCAAAACTTACCAAATT
326 CATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATT
*
67713837 GACCAATTCACTTGGCCATTCAAAAGGGCATCAAAACATACCAATTTTTTTTTTGAACACAAAAC
391 GACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACC-A-TTTTTTTTTGAACACAAAAC
67713902 ATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCA
454 ATATACCAAAATTCATTCATGATCACATCCATAACCAAGCCA
67713944 TATCACATGG
Statistics
Matches: 1471, Mismatches: 66, Indels: 14
0.95 0.04 0.01
Matches are distributed among these distances:
524 991 0.67
525 14 0.01
526 405 0.28
527 10 0.01
528 51 0.03
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (526 bp):
CCCGTGTGTGCGACTATGTGATCTGACCAGGCTCATTTCGAAATGGCCTTCGAGCAACAAGGCTG
AGACACACGCCCGTGTCCCTGCCCGTATGGGCAAAAATAGGCCATTTAGAAGGCCATAATGCCAC
CATATAAGGGTCCTCCCTACAAGCATCAAAACGAATTCATTTTGTACCAAATTTTCAACCAATTC
ACAACCAAAACTTACAACATTCATGACATATCATTATCATCAATTTCATGCTTATAATCCATAGC
AAATCATGACATATCCTAAGCCAAAAATCATACCAAAATACATGATTCACAATCTCAATTTACCT
CATTCACTCTTATGCTAACATATTACCAAATTCCAAAATAGGCACATACCAAAACTTACCAAATT
GACCAATTCACTTGGCCATTCAAAAGTGCATCAAAACATACCATTTTTTTTTGAACACAAAACAT
ATACCAAAATTCATTCATGATCACATCCATAACCAAGCCAAAATTGACTTGGCCACATGACCTGG
CACACG
Found at i:67714575 original size:42 final size:43
Alignment explanation
Indices: 67714475--67714636 Score: 161
Period size: 43 Copynumber: 3.8 Consensus size: 43
67714465 AGCTCGTACA
* * * *
67714475 ATGCCAATGTCCCAGAC-GTGGCCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACAGTGGTCTTACACGAAATCAAACA-CG
* *
67714518 ATGCCACTTTCCCAGACAG-GGTCTTACACGAAATCAAACACG
1 ATGCCAATGTCCCAGACAGTGGTCTTACACGAAATCAAACACG
* **
67714560 ATGCCGATGTCCCAGACA-TGGTCTTACACGTAAATCATAAGTCG
1 ATGCCAATGTCCCAGACAGTGGTCTTACACG-AAATCA-AACACG
** *
67714604 ATGCCAACATCCCAGA-TGTGGTCTTACACGAAA
1 ATGCCAATGTCCCAGACAGTGGTCTTACACGAAA
67714637 ACACATATCG
Statistics
Matches: 99, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
42 28 0.28
43 41 0.41
44 30 0.30
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGTGGTCTTACACGAAATCAAACACG
Found at i:67714617 original size:86 final size:85
Alignment explanation
Indices: 67714475--67714636 Score: 204
Period size: 86 Copynumber: 1.9 Consensus size: 85
67714465 AGCTCGTACA
* * *
67714475 ATGCCAATGTCCCAGACGTGGCCTTACATGTAATCAAATATCGATGCCACTTTCCCAGACAG-GG
1 ATGCCAATGTCCCAGACATGGCCTTACACGTAATCAAATATCGATGCCACTATCCCAGA-AGTGG
67714539 TCTTACACGAAATCAAACACG
65 TCTTACACGAAATCAAACACG
* * * *
67714560 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCATAA-GTCGATGCCAAC-ATCCCAGATGT
1 ATGCCAATGTCCCAGACATGGCCTTACACGT-AATCA-AATATCGATGCC-ACTATCCCAGAAGT
67714623 GGTCTTACACGAAA
63 GGTCTTACACGAAA
67714637 ACACATATCG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 28 0.42
86 34 0.52
87 4 0.06
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (85 bp):
ATGCCAATGTCCCAGACATGGCCTTACACGTAATCAAATATCGATGCCACTATCCCAGAAGTGGT
CTTACACGAAATCAAACACG
Found at i:67724424 original size:66 final size:67
Alignment explanation
Indices: 67724212--67724657 Score: 420
Period size: 67 Copynumber: 6.7 Consensus size: 67
67724202 GGCTATAATG
** * * * *
67724212 GGGTATAACATGTAAGACCATAGCTCAACTATGACAACATAGAGAGTCCACCATGACATTAAACA
1 GGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCACCAGGACATTAAACA
67724277 T-
66 TA
* * * * * * **
67724278 GTGGTATTATGTGAAAGACCATAGCT-TATCTATGGAAAGATACAGAGTTTTGCCAGGACATT-A
1 G-GGTATAATGTGTAAGACCATAGCTCGA-CTATGGCAACATAGAGAG-TTCACCAGGACATTAA
67724341 ACATA
63 ACATA
* * *
67724346 GTGTATAATGTGTAAAACCATAGCTCGACTATGGCAACATAGACAGTTCACCAGGACATTAAACA
1 GGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCACCAGGACATTAAACA
67724411 T-
66 TA
* * * * * * *
67724412 GGGTGTAATGTGTAAGACCATAGGTCGACTATGGTAACATAAAAAGTCCACCAGGACATGAAACA
1 GGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCACCAGGACATTAAACA
67724477 TA
66 TA
** * * * *
67724479 GGGTATAATGTGTAAGACCATAATTCG-CTATGACAACATAAAGAGTTCACCAAGATATTAAACA
1 GGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCACCAGGACATTAAACA
67724543 TA
66 TA
* * * * * **
67724545 TGGTATATTGTGTAAGACCATACCTTGACTATTGTTACATAGAGAGTTC-CCTAGGACATTAAAC
1 GGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCACC-AGGACATTAAAC
*
67724609 ATG
65 ATA
* * * * *
67724612 GGGTATGATGTGTAAGACCACAGCT-AACTATGACAACATATAGAGT
1 GGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGT
67724658 CTGTTGGGAC
Statistics
Matches: 304, Mismatches: 67, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
66 142 0.47
67 150 0.49
68 12 0.04
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.26
Consensus pattern (67 bp):
GGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCACCAGGACATTAAACA
TA
Found at i:67724499 original size:133 final size:131
Alignment explanation
Indices: 67724212--67724657 Score: 448
Period size: 133 Copynumber: 3.4 Consensus size: 131
67724202 GGCTATAATG
** * *
67724212 GGGTATAACATGTAAGACCATAGCTCAACTATGACAACATAGAGAGTCCACCATGACATTAAACA
1 GGGTATAATGTGTAAGACCATAGCTCAACTATGACAACATAGAGAGTTCACCAAGACATTAAACA
* * * * * * ** *
67724277 TGTGGTATTATGTGAAAGACCATAGCTTATCTATGGAAAGATACAGAGTTTTGCCAGGACATTAA
66 TG-GGTATAATGTGTAAGACCATAGCTGA-CTATGGTAACATAAAGAG-TTCCCCAGGACATAAA
67724342 CATA
128 CATA
* * * * * *
67724346 GTGTATAATGTGTAAAACCATAGCTCGACTATGGCAACATAGACAGTTCACCAGGACATTAAACA
1 GGGTATAATGTGTAAGACCATAGCTCAACTATGACAACATAGAGAGTTCACCAAGACATTAAACA
* * *
67724411 TGGGTGTAATGTGTAAGACCATAGGTCGACTATGGTAACATAAAAAG-TCCACCAGGACATGAAA
66 TGGGTATAATGTGTAAGACCATAGCT-GACTATGGTAACATAAAGAGTTCC-CCAGGACAT-AAA
67724475 CATA
128 CATA
** * * *
67724479 GGGTATAATGTGTAAGACCATAATTC-GCTATGACAACATAAAGAGTTCACCAAGATATTAAACA
1 GGGTATAATGTGTAAGACCATAGCTCAACTATGACAACATAGAGAGTTCACCAAGACATTAAACA
* * * * * * *
67724543 TATGGTATATTGTGTAAGACCATACCTTGACTATTGTTACATAGAGAGTTCCCTAGGACATTAAA
66 T-GGGTATAATGTGTAAGACCATAGC-TGACTATGGTAACATAAAGAGTTCCCCAGGACA-TAAA
*
67724608 CATG
128 CATA
* * *
67724612 GGGTATGATGTGTAAGACCACAGCT-AACTATGACAACATATAGAGT
1 GGGTATAATGTGTAAGACCATAGCTCAACTATGACAACATAGAGAGT
67724658 CTGTTGGGAC
Statistics
Matches: 256, Mismatches: 48, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
131 1 0.00
132 42 0.16
133 149 0.58
134 64 0.25
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.26
Consensus pattern (131 bp):
GGGTATAATGTGTAAGACCATAGCTCAACTATGACAACATAGAGAGTTCACCAAGACATTAAACA
TGGGTATAATGTGTAAGACCATAGCTGACTATGGTAACATAAAGAGTTCCCCAGGACATAAACAT
A
Found at i:67726062 original size:344 final size:344
Alignment explanation
Indices: 67725415--67726081 Score: 1113
Period size: 343 Copynumber: 1.9 Consensus size: 344
67725405 CCTTAAAAGC
* *
67725415 AAGGTATCACAAATAGGGTGAAATACAAGGGAGTAACCCAAACAAAATTTCAAATTGAGTGTAGG
1 AAGGTATCACAAATAGGGTGAAATACAAGGGAGTAACCCAAAAAAAAATTCAAATTGAGTGTAGG
*
67725480 GTAGAAGTAGAAAAGATGAAATAGAGTAAGTCTGCCATGGTGGCATGGGTTTTTATTAGTGGCCT
66 GTAGAAGTAGAAAAGATGAAATAGAGTAAGTCTGCCAAGGTGGCATGGGTTTTTATTAGTGGCCT
* * *
67725545 AAGTGTGGAATGCCAGTAAATATGCCTGAACTATTTTGAGATATAAGGATCAACTAAAGGGTACC
131 AAGGGTGGAATGCCAGTAAATATGCCAGAACTATTTTGAGATACAAGGATCAACTAAAGGGTACC
* * *
67725610 ACGTAATGGGAGTTTCATTAAGGATAGAGCATACAATCAGACTTACAATCAAGGATGGTGATGTG
196 ACGTAATGGGAGTTTCATTAAGGATAGAACATACAATCAGACTTACAACCAAGGATGATGATGTG
*
67725675 GCCAACAACTCACCAGGTTTCAAATTATAGGTCTATAAGTCGGGATAAAGGTAAATGGTTGTTTA
261 GCCAACAACTCACCAAGTTTCAAATTATAGGTCTATAAGTCGGGATAAAGGTAAATGGTTGTTTA
67725740 TAACCAGAAATCTGTGGAA
326 TAACCAGAAATCTGTGGAA
67725759 AAGGTATCA-AGAATAGGGTGAAATACAAGGGAGTAACCCAAAAAAAAATTCAAATTGAGTGTAG
1 AAGGTATCACA-AATAGGGTGAAATACAAGGGAGTAACCCAAAAAAAAATTCAAATTGAGTGTAG
* *
67725823 GGTGGAAGTAGAAAAGATGAAATAGAGTAAGTCTGCCAAGGTGGCGTGGG-TTTTATTAGTGGCC
65 GGTAGAAGTAGAAAAGATGAAATAGAGTAAGTCTGCCAAGGTGGCATGGGTTTTTATTAGTGGCC
* * *
67725887 TAAGGGTGGAATGTCAGTAAATATGCCAGAACTATTTTGAGATACGAGGATCATCTAAAGGGTAC
130 TAAGGGTGGAATGCCAGTAAATATGCCAGAACTATTTTGAGATACAAGGATCAACTAAAGGGTAC
* * * * *
67725952 CATGTAATGGGAGTTTTATTAAGGATGGAACGTACAATCAGATTTACAACCAAGGATGATGATGT
195 CACGTAATGGGAGTTTCATTAAGGATAGAACATACAATCAGACTTACAACCAAGGATGATGATGT
*
67726017 GGCCAACAACTCACCAAGTTTCAAAGTTATAGGTCTATGAGTCGGGATAAAGGTAAATGGTTGTT
260 GGCCAACAACTCACCAAGTTTCAAA-TTATAGGTCTATAAGTCGGGATAAAGGTAAATGGTTGTT
67726082 CATGACTGGA
Statistics
Matches: 300, Mismatches: 21, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
343 155 0.52
344 145 0.48
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.26
Consensus pattern (344 bp):
AAGGTATCACAAATAGGGTGAAATACAAGGGAGTAACCCAAAAAAAAATTCAAATTGAGTGTAGG
GTAGAAGTAGAAAAGATGAAATAGAGTAAGTCTGCCAAGGTGGCATGGGTTTTTATTAGTGGCCT
AAGGGTGGAATGCCAGTAAATATGCCAGAACTATTTTGAGATACAAGGATCAACTAAAGGGTACC
ACGTAATGGGAGTTTCATTAAGGATAGAACATACAATCAGACTTACAACCAAGGATGATGATGTG
GCCAACAACTCACCAAGTTTCAAATTATAGGTCTATAAGTCGGGATAAAGGTAAATGGTTGTTTA
TAACCAGAAATCTGTGGAA
Found at i:67745325 original size:39 final size:38
Alignment explanation
Indices: 67745232--67745326 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 38
67745222 AAATTGAATG
* *
67745232 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGG--ACT
* * *
67745272 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAGTGG-CT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGC--TGGACT
67745311 ATATCCGGGCTAAGAC
1 ATATCCGGGCTAAGAC
67745327 GGCATAGTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
39 16 0.34
40 28 0.60
42 3 0.06
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.22
Consensus pattern (38 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGACT
Found at i:67753263 original size:40 final size:41
Alignment explanation
Indices: 67753197--67753380 Score: 218
Period size: 40 Copynumber: 4.6 Consensus size: 41
67753187 AAATTGAATG
* * **
67753197 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTCGTGC-GAGTCATT
* * ***
67753236 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCATT
67753276 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCATT
*
67753316 CTATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCATT
*
67753356 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
67753381 TTTGTGCACA
Statistics
Matches: 127, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 16 0.13
40 111 0.87
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCATT
Found at i:67753381 original size:40 final size:40
Alignment explanation
Indices: 67753237--67753387 Score: 223
Period size: 40 Copynumber: 3.8 Consensus size: 40
67753227 CTGGAAATTA
* * *** *
67753237 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
67753277 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
67753317 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
*
67753357 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGC
67753388 ACATGCTTAT
Statistics
Matches: 103, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 3 0.03
40 100 0.97
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
Found at i:67755396 original size:39 final size:39
Alignment explanation
Indices: 67755338--67755528 Score: 310
Period size: 39 Copynumber: 4.9 Consensus size: 39
67755328 ATGTATGAGA
*
67755338 CTAGAAATATATCCGGACATGAGGTCTGCAGGCTATATG
1 CTAGAAATATATCCGGACATGAGGTCCGCAGGCTATATG
* **
67755377 CTGGAAATATATCTAGACATGAGGTCCGCAGGCTATATG
1 CTAGAAATATATCCGGACATGAGGTCCGCAGGCTATATG
*
67755416 CTAGAAATATATCCGGACATGAGGTCCGTAGGCTATATG
1 CTAGAAATATATCCGGACATGAGGTCCGCAGGCTATATG
*
67755455 CTGGAAATATATCCGGACATGAGGTCCGCAGGCTATATG
1 CTAGAAATATATCCGGACATGAGGTCCGCAGGCTATATG
* *
67755494 CTAGAAATATATCCGGACTTGAGGTCCGCAAGCTA
1 CTAGAAATATATCCGGACATGAGGTCCGCAGGCTA
67755529 CGTGCTGAAA
Statistics
Matches: 139, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 139 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (39 bp):
CTAGAAATATATCCGGACATGAGGTCCGCAGGCTATATG
Found at i:67757770 original size:40 final size:40
Alignment explanation
Indices: 67757578--67757763 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
67757568 TCGAATGATG
* * *
67757578 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
67757618 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67757658 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
67757698 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
67757739 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67757764 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67757770 original size:80 final size:80
Alignment explanation
Indices: 67757578--67757796 Score: 238
Period size: 80 Copynumber: 2.8 Consensus size: 80
67757568 TCGAATGATG
* * **
67757578 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
67757642 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
* *
67757658 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
67757720 TCTGTGCGAGTTACTATAA
64 TC-GTGCGAGTTACTA-AA
* **
67757739 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
67757797 TACGTGATTC
Statistics
Matches: 119, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
79 19 0.16
80 90 0.76
81 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:67763969 original size:47 final size:47
Alignment explanation
Indices: 67763895--67764381 Score: 726
Period size: 47 Copynumber: 10.4 Consensus size: 47
67763885 AACTGCTTGT
* *
67763895 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* *
67763942 AGTGTATATATGTGATAAGGCCTAATGGCC-ATGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* *
67763988 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* *
67764035 AGTGCATATCTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * * *
67764082 AGTGTATGTATGTGATAAGG-CTAATGGCCCACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * *
67764128 AGTGCATATGTGTGATAAGGCCGAATGGCCAATATGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* *
67764175 AGTGTATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* *
67764222 AGTGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
** *
67764269 AGTGTATACGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* *
67764316 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* *
67764363 AGTGCATATGTGTGATAAG
1 AGTGTATATATGTGATAAG
67764382 TCCCGAAGGG
Statistics
Matches: 399, Mismatches: 39, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
46 86 0.22
47 313 0.78
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
Found at i:67764157 original size:140 final size:141
Alignment explanation
Indices: 67763895--67764381 Score: 744
Period size: 140 Copynumber: 3.5 Consensus size: 141
67763885 AACTGCTTGT
* * *
67763895 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGTGATAA
* * * *
67763960 GGCCTAATGG-CCATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
66 GGCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCGAATGGCCAATGTG
67764024 ATGAATGTGAA
131 ATGAATGTGAA
* * * *
67764035 AGTGCATATCTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGTGATAA
* * *
67764100 GG-CTAATGGCCCACGTGATGAATGTGAAAGTGCATATGTGTGATAAGGCCGAATGGCCAATATG
66 GGCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCGAATGGCCAATGTG
67764164 ATGAATGTGAA
131 ATGAATGTGAA
* * *
67764175 AGTGTATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTGCATATGTGTGATAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGTGATAA
* * *
67764240 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATACGTGTGATAAGGCCGAATGGCCAATGTG
66 GGCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCGAATGGCCAATGTG
*
67764305 ATGGATGTGAA
131 ATGAATGTGAA
* * *
67764316 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATATGTGTGATAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGTGATAA
67764381 G
66 G
67764382 TCCCGAAGGG
Statistics
Matches: 319, Mismatches: 26, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
139 7 0.02
140 181 0.57
141 131 0.41
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (141 bp):
AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGTGATAA
GGCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCGAATGGCCAATGTG
ATGAATGTGAA
Found at i:67767102 original size:47 final size:47
Alignment explanation
Indices: 67767026--67767445 Score: 660
Period size: 47 Copynumber: 8.9 Consensus size: 47
67767016 AACTGCTTGT
* * *
67767026 AGTGCATATGTGTGGTAAGGCCGAATGGCCAATGTGATGGATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * *
67767073 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * *
67767120 AGTGAATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * *
67767167 AGTGTATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
67767214 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
*
67767261 AGTGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * *
67767308 AGTGTATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
*
67767355 AGTGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
** *
67767402 AGTGTATGCGTGTGATAAGGCCGAATGGCCAATGTGATGGATGT
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
67767446 AACACCCGTA
Statistics
Matches: 347, Mismatches: 26, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 347 1.00
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
Found at i:67767251 original size:22 final size:22
Alignment explanation
Indices: 67767224--67767298 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
67767214 AGTGTATATG
67767224 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
67767246 TGTGATGAATG-TGAAAGTG-CATA
1 TGTGAT-AAGGCCGAATG-GCCA-A
67767269 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
67767293 TGTGAT
1 TGTGAT
67767299 GAATGTGAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 18 0.45
23 5 0.12
24 5 0.12
25 12 0.30
ACGTcount: A:0.31, C:0.12, G:0.32, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:67768883 original size:40 final size:40
Alignment explanation
Indices: 67768830--67768966 Score: 143
Period size: 40 Copynumber: 3.5 Consensus size: 40
67768820 GGATATAACG
*
67768830 ACTCGCTCAAATGCCTTCGGGAC-AAACCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCCGGTT-TAGTA
* * * *
67768870 ACTCGCACGAATGCCTTCGGAACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCCGGTTTAGTA
* ** * *
67768910 ACTCGCACAAATGCCTTCGGG-CTTAACCTAGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCCGGTTTAGTA
* *
67768949 ACTCGCACGAACGCCTTC
1 ACTCGCACAAATGCCTTC
67768967 AGATCTTAGT
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 30 0.36
40 44 0.53
41 9 0.11
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTAAACCCCGGTTTAGTA
Found at i:67773393 original size:40 final size:40
Alignment explanation
Indices: 67773338--67773499 Score: 234
Period size: 40 Copynumber: 4.0 Consensus size: 40
67773328 AGGTCTCGAC
67773338 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
67773378 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* ** * *
67773418 GATGTATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
67773458 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
67773498 GA
1 GA
67773500 CGTGTATTCG
Statistics
Matches: 108, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 108 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:67776581 original size:47 final size:47
Alignment explanation
Indices: 67776507--67777276 Score: 1182
Period size: 47 Copynumber: 16.4 Consensus size: 47
67776497 ACCTGCTTGT
*
67776507 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * * *
67776554 AGTGTATATATGTGATAAGGCCTAATGGCCCATGTGATGGATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
*
67776601 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * *
67776648 AGTGTATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* *
67776695 AGTGCATATGTGTGATAAGGACGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * * *
67776742 AGTGTATATATGTGATAAGGCCTAATGGCCCATGTGGTGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* *
67776789 AGTGCATATGTGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * *
67776836 AGTGTATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
*
67776883 AGTGCATATGTGTGATAA-GCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
*
67776929 AGTGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * *
67776976 AGTGTATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
*
67777023 AGTGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * * *
67777070 AGTGTATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGGA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
*
67777117 AGTGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * *
67777164 AGTGTATACGTGTGATAAGGCCGAATGGCCAATGTAATGGATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * * *
67777211 AGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
*
67777258 AGTGCATATGTGTGATAAG
1 AGTGTATATGTGTGATAAG
67777277 TCCCGAAGGG
Statistics
Matches: 656, Mismatches: 66, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
46 44 0.07
47 612 0.93
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
AGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
Found at i:67783078 original size:40 final size:40
Alignment explanation
Indices: 67782887--67783071 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
67782877 TCGAATGATG
* * *
67782887 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
67782926 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67782966 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
67783006 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
67783047 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67783072 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
39 11 0.08
40 111 0.85
41 8 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67783078 original size:80 final size:79
Alignment explanation
Indices: 67782939--67783094 Score: 194
Period size: 80 Copynumber: 2.0 Consensus size: 79
67782929 GGACTAAGAT
**
67782939 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
67783003 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* *
67783019 CCGAAGGCA-TCTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAG
1 CCGAAGGCATTC-GTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAG
*
67783081 CTATATCCGGTTAA
63 CTAAATCCGGTTAA
67783095 ACTCCGAAGG
Statistics
Matches: 67, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
79 11 0.16
80 54 0.81
81 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:67785822 original size:40 final size:39
Alignment explanation
Indices: 67785778--67785931 Score: 191
Period size: 39 Copynumber: 3.9 Consensus size: 39
67785768 GTTCAAAACA
* * ** * *
67785778 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
67785818 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
67785858 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
67785897 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
67785932 TTCATTCACA
Statistics
Matches: 100, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 60 0.60
40 40 0.40
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:67785889 original size:39 final size:39
Alignment explanation
Indices: 67785808--67785931 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
67785798 TATGGTAACC
* *
67785808 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
67785848 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
67785887 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
67785926 CGCACA
1 CGCACA
67785932 TTCATTCACA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 60 0.78
40 17 0.22
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:67789799 original size:46 final size:46
Alignment explanation
Indices: 67789732--67789822 Score: 182
Period size: 46 Copynumber: 2.0 Consensus size: 46
67789722 TCACATAACA
67789732 TATTAGCCCTAATGAGCTCATACCATAATCAAACATAATCGATTTT
1 TATTAGCCCTAATGAGCTCATACCATAATCAAACATAATCGATTTT
67789778 TATTAGCCCTAATGAGCTCATACCATAATCAAACATAATCGATTT
1 TATTAGCCCTAATGAGCTCATACCATAATCAAACATAATCGATTT
67789823 CAAGTAAGGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (46 bp):
TATTAGCCCTAATGAGCTCATACCATAATCAAACATAATCGATTTT
Found at i:67795723 original size:68 final size:70
Alignment explanation
Indices: 67795651--67795848 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
67795641 ACACCCTGTA
* * * *
67795651 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
67795713 ATAAAT
65 ATAAAT
*
67795719 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
67795784 ATAAAT
65 ATAAAT
*
67795790 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
67795849 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:67795762 original size:41 final size:41
Alignment explanation
Indices: 67795717--67795834 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
67795707 TGAAAGATAA
67795717 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
67795758 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67795788 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67795829 ATGTAG
1 ATGTAG
67795835 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:67795774 original size:71 final size:71
Alignment explanation
Indices: 67795685--67795848 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67795675 GAGATGTATC
67795685 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67795750 AGGACA
66 AGGACA
67795756 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67795821 AGGACA
66 AGGACA
67795827 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
67795849 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:67803292 original size:68 final size:70
Alignment explanation
Indices: 67803220--67803417 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
67803210 ACACCCTGTA
* * * *
67803220 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
67803282 ATAAAT
65 ATAAAT
*
67803288 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
67803353 ATAAAT
65 ATAAAT
*
67803359 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
67803418 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:67803331 original size:41 final size:41
Alignment explanation
Indices: 67803286--67803403 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
67803276 TGAAAGATAA
67803286 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
67803327 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67803357 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67803398 ATGTAG
1 ATGTAG
67803404 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:67803343 original size:71 final size:71
Alignment explanation
Indices: 67803254--67803417 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67803244 GAGATGTATC
67803254 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67803319 AGGACA
66 AGGACA
67803325 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67803390 AGGACA
66 AGGACA
67803396 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
67803418 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:67806491 original size:41 final size:42
Alignment explanation
Indices: 67806364--67806491 Score: 136
Period size: 43 Copynumber: 3.0 Consensus size: 42
67806354 ACATAGGATT
* *
67806364 TCGATATGTGTTCTCGTGTAAGACCATGTCTGGAAC-GTTGGCA
1 TCGATATGTGAT-TCGTGTAAGACCATGTCTGGGACAG-TGGCA
* * *
67806407 TCGATATGTGATTACGTGTAAAACCACGTTTGGGACA-TCGGCA
1 TCGATATGTGATT-CGTGTAAGACCATGTCTGGGACAGT-GGCA
* *
67806450 TCG-TATTTGATTCGTGTAAGACCTTGTCTGGGACAGTGGCA
1 TCGATATGTGATTCGTGTAAGACCATGTCTGGGACAGTGGCA
67806491 T
1 T
67806492 TGATTTATCG
Statistics
Matches: 71, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
41 24 0.34
42 11 0.15
43 36 0.51
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (42 bp):
TCGATATGTGATTCGTGTAAGACCATGTCTGGGACAGTGGCA
Found at i:67814811 original size:29 final size:29
Alignment explanation
Indices: 67814772--67814850 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
67814762 CTTAATAATC
*
67814772 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
67814802 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
67814831 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
67814851 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:67815506 original size:2 final size:2
Alignment explanation
Indices: 67815488--67815535 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
67815478 TGATGGCCGA
* *
67815488 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67815530 AT AT AT
1 AT AT AT
67815536 CAACATACTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67822926 original size:29 final size:29
Alignment explanation
Indices: 67822884--67822958 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
67822874 TATAGTGGGT
*
67822884 TCGCACACTTAGTGCCATGTACTTT-AAAC
1 TCGCACACTTAGTGCCATGCA-TTTCAAAC
*
67822913 TCGCACACTTAGTGCCATGCATTTCAAGC
1 TCGCACACTTAGTGCCATGCATTTCAAAC
*
67822942 CCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
67822959 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 3 0.07
29 39 0.93
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATGCATTTCAAAC
Found at i:67826153 original size:43 final size:42
Alignment explanation
Indices: 67826078--67826207 Score: 120
Period size: 43 Copynumber: 3.1 Consensus size: 42
67826068 AAATAGGATT
* * **
67826078 TCGATATGTGTTCTCGTGTAAGACTACATCTGGGACGTTGGCA
1 TCGATATGTG-ACTCGTGTAAGACCATGTCTGGGACGTTGGCA
* * *
67826121 TCGATATGTGACTACGTGTAAGACCATGTCTGGAACATCGGCA
1 TCGATATGTGACT-CGTGTAAGACCATGTCTGGGACGTTGGCA
* * * *
67826164 -CCATATTTGATTCGTGTAAGACCCTGTCTGGGACAG-TGGCA
1 TCGATATGTGACTCGTGTAAGACCATGTCTGGGAC-GTTGGCA
67826205 TCG
1 TCG
67826208 TTTATTTTCG
Statistics
Matches: 69, Mismatches: 15, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
41 24 0.35
42 12 0.17
43 33 0.48
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (42 bp):
TCGATATGTGACTCGTGTAAGACCATGTCTGGGACGTTGGCA
Found at i:67833209 original size:68 final size:70
Alignment explanation
Indices: 67833137--67833334 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
67833127 ACACCCTGTA
* * * *
67833137 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
67833199 ATAAAT
65 ATAAAT
*
67833205 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
67833270 ATAAAT
65 ATAAAT
*
67833276 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
67833335 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:67833248 original size:41 final size:41
Alignment explanation
Indices: 67833203--67833320 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
67833193 TGAAAGATAA
67833203 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
67833244 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67833274 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67833315 ATGTAG
1 ATGTAG
67833321 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:67833260 original size:71 final size:71
Alignment explanation
Indices: 67833171--67833334 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67833161 GAGATGTATC
67833171 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67833236 AGGACA
66 AGGACA
67833242 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67833307 AGGACA
66 AGGACA
67833313 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
67833335 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:67840777 original size:68 final size:70
Alignment explanation
Indices: 67840705--67840902 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
67840695 ACACCCTGTA
* * * *
67840705 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
67840767 ATAAAT
65 ATAAAT
*
67840773 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
67840838 ATAAAT
65 ATAAAT
*
67840844 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
67840903 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:67840816 original size:41 final size:41
Alignment explanation
Indices: 67840771--67840888 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
67840761 TGAAAGATAA
67840771 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
67840812 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67840842 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67840883 ATGTAG
1 ATGTAG
67840889 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:67840828 original size:71 final size:71
Alignment explanation
Indices: 67840739--67840902 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67840729 GAGATGTATC
67840739 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67840804 AGGACA
66 AGGACA
67840810 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67840875 AGGACA
66 AGGACA
67840881 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
67840903 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:67848327 original size:68 final size:70
Alignment explanation
Indices: 67848255--67848452 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
67848245 ACACCCTGTA
* * * *
67848255 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
67848317 ATAAAT
65 ATAAAT
*
67848323 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
67848388 ATAAAT
65 ATAAAT
*
67848394 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
67848453 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:67848366 original size:41 final size:41
Alignment explanation
Indices: 67848321--67848438 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
67848311 TGAAAGATAA
67848321 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
67848362 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67848392 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67848433 ATGTAG
1 ATGTAG
67848439 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:67848378 original size:71 final size:71
Alignment explanation
Indices: 67848289--67848452 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67848279 GAGATGTATC
67848289 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67848354 AGGACA
66 AGGACA
67848360 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67848425 AGGACA
66 AGGACA
67848431 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
67848453 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:67852747 original size:25 final size:26
Alignment explanation
Indices: 67852713--67852764 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
67852703 GATAGAATGA
67852713 CTCGCACGAATGCC-TCGGGTCTTAG
1 CTCGCACGAATGCCTTCGGGTCTTAG
67852738 CTCGCACGAATGCCTTCGGGTCTTAG
1 CTCGCACGAATGCCTTCGGGTCTTAG
67852764 C
1 C
67852765 CCGGATATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.15, C:0.33, G:0.27, T:0.25
Consensus pattern (26 bp):
CTCGCACGAATGCCTTCGGGTCTTAG
Found at i:67852792 original size:65 final size:66
Alignment explanation
Indices: 67852676--67852802 Score: 177
Period size: 65 Copynumber: 1.9 Consensus size: 66
67852666 ATAAGCATGT
** *
67852676 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCC-TCGGGTCTTAGCT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTAGCACGAATGCCTTCGGGTCTTAGCT
67852740 C
66 C
* * *
67852741 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCAC-AATTGCCTTCGGGTCTTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTAGCACGAA-TGCCTTCGGGTCTTA
67852803 ACCCGGATAT
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
64 2 0.04
65 42 0.78
66 10 0.19
ACGTcount: A:0.21, C:0.29, G:0.25, T:0.24
Consensus pattern (66 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTAGCACGAATGCCTTCGGGTCTTAGCT
C
Found at i:67852829 original size:40 final size:40
Alignment explanation
Indices: 67852748--67852851 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
67852738 CTCGCACGAA
* *
67852748 TGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAACCACCAGCACAAT
* *** *
67852788 TGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAACCACCAGCACAAT
*
67852828 TGTCTTCGGG-CTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
67852852 CATTCAATTT
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
39 13 0.24
40 42 0.76
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.30
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACCACCAGCACAAT
Found at i:67855768 original size:3 final size:3
Alignment explanation
Indices: 67855760--67855784 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
67855750 CCCAAAGATT
67855760 TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
67855785 AGTTACGGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:67856447 original size:27 final size:27
Alignment explanation
Indices: 67856415--67856560 Score: 211
Period size: 27 Copynumber: 5.4 Consensus size: 27
67856405 GGGGCAAAAT
* * * *
67856415 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67856442 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67856469 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67856496 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
67856523 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
67856550 AATAATTCTAC
1 GGTAATTCTAC
67856561 AACATATCCA
Statistics
Matches: 107, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 107 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:67858794 original size:39 final size:39
Alignment explanation
Indices: 67858657--67858879 Score: 292
Period size: 40 Copynumber: 5.7 Consensus size: 39
67858647 GCTACTCGTT
* *
67858657 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
67858697 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
*
67858737 CCAATGCCTTCGGG-CTTAGCCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
*
67858775 CAAATGCCTTC-GGATCTTAGTCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTAGTAACTCGCA
* * *
67858814 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
67858855 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67858880 CATCATTCGA
Statistics
Matches: 167, Mismatches: 10, Indels: 12
0.88 0.05 0.06
Matches are distributed among these distances:
37 2 0.01
38 23 0.14
39 60 0.36
40 70 0.42
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:67858839 original size:117 final size:119
Alignment explanation
Indices: 67858657--67858879 Score: 303
Period size: 117 Copynumber: 1.9 Consensus size: 119
67858647 GCTACTCGTT
*
67858657 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
67858722 ATTTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCCCGGATTAGTAACTCGCA
66 ATATAGTAACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* * **
67858775 CAAATGCCTTC-GGATCTTAGTCCGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
*
67858837 GGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
67858880 CATCATTCGA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
116 3 0.03
117 54 0.59
118 35 0.38
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:67866832 original size:40 final size:40
Alignment explanation
Indices: 67866776--67867018 Score: 284
Period size: 40 Copynumber: 6.1 Consensus size: 40
67866766 CGGAATTTAA
** *
67866776 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67866816 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67866856 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAG-
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
67866894 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
67866934 CCGGATATAGTAACTCGCACAAATGCATTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
67866974 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
67867014 CCGGA
1 CCGGA
67867019 CATCATTCGA
Statistics
Matches: 179, Mismatches: 16, Indels: 16
0.85 0.08 0.08
Matches are distributed among these distances:
37 2 0.01
38 27 0.15
39 10 0.06
40 128 0.72
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:67866923 original size:78 final size:79
Alignment explanation
Indices: 67866776--67867018 Score: 280
Period size: 78 Copynumber: 3.1 Consensus size: 79
67866766 CGGAATTTAA
** * *
67866776 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAAT
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAAT
*
67866840 GCCTTCGGGACTTAAC
64 GCCTTCGGGACTTAGC
* *
67866856 CCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAG-CCGGA-ATTAGTAACTCGCACAAATG
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
67866919 CCTTC-GGATCTTAGT
65 CCTTCGGGA-CTTAGC
* * * * *
67866934 CCGGATATAGTAACTCGCACAAATGCATTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-
1 CCGGATATAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAAT
67866998 GCCTTCGGGACTTAGC
64 GCCTTCGGGACTTAGC
67867014 CCGGA
1 CCGGA
67867019 CATCATTCGA
Statistics
Matches: 140, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
77 4 0.03
78 60 0.43
79 10 0.07
80 54 0.39
81 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGC
CTTCGGGACTTAGC
Found at i:67867002 original size:118 final size:119
Alignment explanation
Indices: 67866795--67867014 Score: 295
Period size: 118 Copynumber: 1.9 Consensus size: 119
67866785 GCTACTCGTT
* *
67866795 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCATTCGGGACTTAACCCGG
* * *
67866860 ATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCGGAATTAGTAACTCGCA
66 ATATAGTAACTAGCACCAAAGCCTTCGGGACTTAGCCGGAATTAGTAACTCGCA
* * **
67866913 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTAACTCGCACAAATGCATTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGTAACTCGCACAAATGCATTCGGGA-CTTAACCC
*
67866976 GGATATAGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCC
64 GGATATAGTAAC-TAGCACCAAAGCCTTCGGGACTTAGCC
67867015 CGGACATCAT
Statistics
Matches: 88, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
117 6 0.07
118 71 0.81
119 11 0.12
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCATTCGGGACTTAACCCGG
ATATAGTAACTAGCACCAAAGCCTTCGGGACTTAGCCGGAATTAGTAACTCGCA
Found at i:67870229 original size:49 final size:49
Alignment explanation
Indices: 67870165--67870284 Score: 152
Period size: 49 Copynumber: 2.4 Consensus size: 49
67870155 TTTGTGTGTT
* * *
67870165 AGTGTAAGAGCTGTCTGGGACATGGCATTGACAC-CGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGCC
* * * *
67870214 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTTGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
*
67870263 AGTGTAAGACCTGTCTAGGACA
1 AGTGTAAGACCTGTCTGGGACA
67870285 CTGCATCAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
48 1 0.02
49 61 0.98
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
Found at i:67877680 original size:32 final size:32
Alignment explanation
Indices: 67877639--67877716 Score: 113
Period size: 32 Copynumber: 2.4 Consensus size: 32
67877629 TGATATTGAA
*
67877639 ATGGGCTAGGCCCAACTGATACTAG-TTCTGAT
1 ATGGGCTAGGCCCAACTGATA-TAGATTCTGAG
*
67877671 ATGGGCTAGGCCCAACTGATATTGATTCTGAG
1 ATGGGCTAGGCCCAACTGATATAGATTCTGAG
*
67877703 ATAGGCTAGGCCCA
1 ATGGGCTAGGCCCA
67877717 CTTAAGATTG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
31 2 0.05
32 40 0.95
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (32 bp):
ATGGGCTAGGCCCAACTGATATAGATTCTGAG
Found at i:67883338 original size:47 final size:47
Alignment explanation
Indices: 67883270--67883485 Score: 369
Period size: 47 Copynumber: 4.6 Consensus size: 47
67883260 CCTGTATATA
* *
67883270 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
67883317 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
67883364 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
**
67883411 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
* * *
67883458 TATATGTGGTAAGGCCGAATGGCTAATG
1 TATGTGTGATAAGGCCGAATGGCCAATG
67883486 CGAAATGTGT
Statistics
Matches: 162, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 162 1.00
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
Found at i:67883525 original size:46 final size:46
Alignment explanation
Indices: 67883459--67883548 Score: 135
Period size: 46 Copynumber: 2.0 Consensus size: 46
67883449 GAACATGTAT
* * *
67883459 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATAG
* *
67883505 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGAT
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGAT
67883549 GTATATATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATAG
Found at i:67886372 original size:40 final size:40
Alignment explanation
Indices: 67885832--67886354 Score: 897
Period size: 40 Copynumber: 13.1 Consensus size: 40
67885822 AGTTGTATAG
* * * *
67885832 CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
67885872 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
67885912 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
67885952 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
67885992 CCGGACTAAATCCCGAAGAGCATTTGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
67886032 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
67886072 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
67886112 CCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
67886152 CCGGACTAAATCCCGAAGAGCATTTGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
67886192 CCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
67886232 CCGGACTAAATCCCGAAGAGCATT-GTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
67886271 CTGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
67886311 CCGTG-CTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCG-GACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
67886351 CCGG
1 CCGG
67886355 GTTGGGTCCC
Statistics
Matches: 460, Mismatches: 21, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
39 37 0.08
40 422 0.92
41 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:67889342 original size:47 final size:47
Alignment explanation
Indices: 67889273--67889483 Score: 359
Period size: 47 Copynumber: 4.5 Consensus size: 47
67889263 CCTGTATATA
* *
67889273 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
*
67889320 TATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
67889367 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
**
67889414 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
* *
67889461 TATATGTGGTAAGGCCGAATGGC
1 TATGTGTGATAAGGCCGAATGGC
67889484 TAATTCGAAA
Statistics
Matches: 156, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 156 1.00
ACGTcount: A:0.30, C:0.12, G:0.32, T:0.27
Consensus pattern (47 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
Found at i:67889375 original size:25 final size:24
Alignment explanation
Indices: 67889299--67889423 Score: 68
Period size: 25 Copynumber: 5.2 Consensus size: 24
67889289 GAATGGCCAA
67889299 TGTGATGAATGTGAACATGTGTATG
1 TGTGATGAATGTGAACATG-GTATG
* * *
67889324 TGTGAT-AAGGCTG-A-ATGGCCA-A
1 TGTGATGAATG-TGAACATGG-TATG
67889346 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATG-GTATG
* * * *
67889371 TGTGAT-AAGGCCG-A-ATGGCCA-A
1 TGTGATGAATG-TGAACATGG-TATG
67889393 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATG-GTATG
67889418 TGTGAT
1 TGTGAT
67889424 AAGGCCGAAT
Statistics
Matches: 72, Mismatches: 14, Indels: 28
0.63 0.12 0.25
Matches are distributed among these distances:
22 17 0.24
23 16 0.22
24 16 0.22
25 23 0.32
ACGTcount: A:0.29, C:0.10, G:0.32, T:0.30
Consensus pattern (24 bp):
TGTGATGAATGTGAACATGGTATG
Found at i:67889528 original size:46 final size:46
Alignment explanation
Indices: 67889462--67889551 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
67889452 GAACATGTAT
* * *
67889462 ATATGTGGTAAGGCCGAATGGCTAAT-TCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCAAATGGCTAATGT-GAAATATGTATGAGATAG
*
67889508 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGAT
1 ATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGAT
67889552 GTATATATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
46 38 0.97
47 1 0.03
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATAG
Found at i:67894273 original size:27 final size:27
Alignment explanation
Indices: 67894236--67894439 Score: 128
Period size: 27 Copynumber: 7.6 Consensus size: 27
67894226 ACATAGGCGT
*
67894236 AAAATAGTCATCTTACCATAAAAGGGC
1 AAAATAGTCATTTTACCATAAAAGGGC
* * *
67894263 AAAATAATCATTTTACCACATAAA-GGT
1 AAAATAGTCATTTTACCATA-AAAGGGC
* * *
67894290 AAAACAGTCATTTTACCTTATAAGGGC
1 AAAATAGTCATTTTACCATAAAAGGGC
* * * ** *
67894317 AAAACAGTTATTTTCCCCCATAAGGGC
1 AAAATAGTCATTTTACCATAAAAGGGC
* * * *
67894344 AAAACAATCATTTTACC-TCATAAGAGC
1 AAAATAGTCATTTTACCAT-AAAAGGGC
* *
67894371 AAAACAGTCATTTTACCTTATAAA-GGC
1 AAAATAGTCATTTTACCATA-AAAGGGC
* * * * *
67894398 AAAACAATCATTTTACC-TCATAATGGA
1 AAAATAGTCATTTTACCAT-AAAAGGGC
67894425 AAAATAGTCATTTTA
1 AAAATAGTCATTTTA
67894440 TCGATTAAGG
Statistics
Matches: 143, Mismatches: 27, Indels: 14
0.78 0.15 0.08
Matches are distributed among these distances:
26 5 0.03
27 132 0.92
28 6 0.04
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.28
Consensus pattern (27 bp):
AAAATAGTCATTTTACCATAAAAGGGC
Found at i:67894330 original size:54 final size:54
Alignment explanation
Indices: 67894257--67894439 Score: 231
Period size: 54 Copynumber: 3.4 Consensus size: 54
67894247 CTTACCATAA
* * * * *
67894257 AAGGGCAAAATAATCATTTTACCACATAAAGGTAAAACAGTCATTTTACCTTAT
1 AAGGGCAAAACAGTCATTTTACCACATAAAGGCAAAACAATCATTTTACCTCAT
* * * *
67894311 AAGGGCAAAACAGTTATTTTCCCCCATAAGGGCAAAACAATCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCACATAAAGGCAAAACAATCATTTTACCTCAT
* **
67894365 AAGAGCAAAACAGTCATTTTACCTTATAAAGGCAAAACAATCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCACATAAAGGCAAAACAATCATTTTACCTCAT
* * *
67894419 AATGGAAAAATAGTCATTTTA
1 AAGGGCAAAACAGTCATTTTA
67894440 TCGATTAAGG
Statistics
Matches: 110, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 110 1.00
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.28
Consensus pattern (54 bp):
AAGGGCAAAACAGTCATTTTACCACATAAAGGCAAAACAATCATTTTACCTCAT
Found at i:67894392 original size:81 final size:81
Alignment explanation
Indices: 67894257--67894439 Score: 251
Period size: 81 Copynumber: 2.3 Consensus size: 81
67894247 CTTACCATAA
* *
67894257 AAGGGCAAAATAATCATTTTACCACATAAAGGTAAAACAGTCATTTTACCTTATAAGGGCAAAAC
1 AAGGGCAAAATAATCATTTTACCACATAAAGGCAAAACAGTCATTTTACCTTATAAAGGCAAAAC
* * *
67894322 AGTTATTTTCCCCCAT
66 AATCATTTTACCCCAT
* *
67894338 AAGGGCAAAACAATCATTTTACCTCAT-AAGAGCAAAACAGTCATTTTACCTTATAAAGGCAAAA
1 AAGGGCAAAATAATCATTTTACCACATAAAG-GCAAAACAGTCATTTTACCTTATAAAGGCAAAA
*
67894402 CAATCATTTTACCTCAT
65 CAATCATTTTACCCCAT
* * *
67894419 AATGGAAAAATAGTCATTTTA
1 AAGGGCAAAATAATCATTTTA
67894440 TCGATTAAGG
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 3 0.03
81 86 0.97
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.28
Consensus pattern (81 bp):
AAGGGCAAAATAATCATTTTACCACATAAAGGCAAAACAGTCATTTTACCTTATAAAGGCAAAAC
AATCATTTTACCCCAT
Found at i:67896673 original size:7 final size:7
Alignment explanation
Indices: 67896661--67896694 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
67896651 AATAGACATG
67896661 GCCGTGT
1 GCCGTGT
67896668 GCCGTG-
1 GCCGTGT
67896674 GCCGTGT
1 GCCGTGT
67896681 GCCGTG-
1 GCCGTGT
67896687 GCCGTGT
1 GCCGTGT
67896694 G
1 G
67896695 ATACTTAGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 12 0.48
7 13 0.52
ACGTcount: A:0.00, C:0.29, G:0.47, T:0.24
Consensus pattern (7 bp):
GCCGTGT
Found at i:67896677 original size:13 final size:13
Alignment explanation
Indices: 67896659--67896694 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
67896649 CTAATAGACA
67896659 TGGCCGTGTGCCG
1 TGGCCGTGTGCCG
67896672 TGGCCGTGTGCCG
1 TGGCCGTGTGCCG
67896685 TGGCCGTGTG
1 TGGCCGTGTG
67896695 ATACTTAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.00, C:0.28, G:0.47, T:0.25
Consensus pattern (13 bp):
TGGCCGTGTGCCG
Found at i:67896679 original size:6 final size:6
Alignment explanation
Indices: 67896659--67896692 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
67896649 CTAATAGACA
67896659 TGGCCG TGTGCCG TGGCCG TGTGCCG TGGCCG TG
1 TGGCCG TG-GCCG TGGCCG TG-GCCG TGGCCG TG
67896693 TGATACTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 14 0.54
7 12 0.46
ACGTcount: A:0.00, C:0.29, G:0.47, T:0.24
Consensus pattern (6 bp):
TGGCCG
Found at i:67897743 original size:44 final size:42
Alignment explanation
Indices: 67897647--67897747 Score: 107
Period size: 44 Copynumber: 2.4 Consensus size: 42
67897637 TCGATGCTTC
* * *
67897647 TGTCCCAGACAGGGTCTTACATGAAATAAGATACGATGCCTA
1 TGTCCCAGACATGGTCTTACACGAAATAAGATACGAGGCCTA
**
67897689 TGTCTTAGACATGGTCTTACACGTAAATCTCAA-AT-CGAGGCCTA
1 TGTCCCAGACATGGTCTTACACG-AAA--T-AAGATACGAGGCCTA
67897733 TGTCCCAGACATGGT
1 TGTCCCAGACATGGT
67897748 GTGTAACACC
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
42 19 0.40
43 3 0.06
44 21 0.44
45 3 0.06
46 2 0.04
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (42 bp):
TGTCCCAGACATGGTCTTACACGAAATAAGATACGAGGCCTA
Found at i:67898898 original size:27 final size:28
Alignment explanation
Indices: 67898858--67898925 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
67898848 TTTAAAACCC
*
67898858 TAGGGGT-ATATCGGTAA-TTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
67898884 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
67898912 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
67898926 TGATCTACGC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 7 0.18
27 9 0.23
28 23 0.59
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:67900549 original size:20 final size:20
Alignment explanation
Indices: 67900526--67900563 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67900516 CACATCCAAA
*
67900526 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
67900546 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
67900564 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:67906689 original size:27 final size:27
Alignment explanation
Indices: 67906659--67906860 Score: 117
Period size: 27 Copynumber: 7.6 Consensus size: 27
67906649 ACATAGGCGT
*
67906659 AAAATAGTCATCTTACCATAAAAGGGC
1 AAAATAGTCATTTTACCATAAAAGGGC
* * *
67906686 AAAATAATCATTTTACCACATAAA-GGT
1 AAAATAGTCATTTTACCATA-AAAGGGC
* * *
67906713 AAAACAGTCATTTTACCTTATAAGGGC
1 AAAATAGTCATTTTACCATAAAAGGGC
* * * ** *
67906740 AAAACAGTTATTTTCCCCCATAAGGGC
1 AAAATAGTCATTTTACCATAAAAGGGC
* * * *
67906767 AAAACAATCATTTTACC-TCATAAGAGC
1 AAAATAGTCATTTTACCAT-AAAAGGGC
* * *
67906794 AAAACAGTCA-TTTACCTTATAA-GGC
1 AAAATAGTCATTTTACCATAAAAGGGC
* * * * *
67906819 AAAACAATCATTTTACC-TCATAATGGA
1 AAAATAGTCATTTTACCAT-AAAAGGGC
67906846 AAAATAGTCATTTTA
1 AAAATAGTCATTTTA
67906861 TCGATTAAGG
Statistics
Matches: 143, Mismatches: 25, Indels: 14
0.79 0.14 0.08
Matches are distributed among these distances:
25 12 0.08
26 22 0.15
27 106 0.74
28 3 0.02
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.28
Consensus pattern (27 bp):
AAAATAGTCATTTTACCATAAAAGGGC
Found at i:67906753 original size:54 final size:54
Alignment explanation
Indices: 67906680--67906860 Score: 213
Period size: 54 Copynumber: 3.4 Consensus size: 54
67906670 CTTACCATAA
* * * * *
67906680 AAGGGCAAAATAATCATTTTACCACATAAAGGTAAAACAGTCATTTTACCTTAT
1 AAGGGCAAAACAGTCATTTTACCACATAAAGGCAAAACAATCATTTTACCTCAT
* * * *
67906734 AAGGGCAAAACAGTTATTTTCCCCCATAAGGGCAAAACAATCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCACATAAAGGCAAAACAATCATTTTACCTCAT
* **
67906788 AAGAGCAAAACAGTCA-TTTACCTTAT-AAGGCAAAACAATCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCACATAAAGGCAAAACAATCATTTTACCTCAT
* * *
67906840 AATGGAAAAATAGTCATTTTA
1 AAGGGCAAAACAGTCATTTTA
67906861 TCGATTAAGG
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
52 37 0.35
53 11 0.10
54 59 0.55
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.28
Consensus pattern (54 bp):
AAGGGCAAAACAGTCATTTTACCACATAAAGGCAAAACAATCATTTTACCTCAT
Found at i:67906815 original size:26 final size:26
Alignment explanation
Indices: 67906683--67906860 Score: 187
Period size: 27 Copynumber: 6.7 Consensus size: 26
67906673 ACCATAAAAG
* * *
67906683 GGCAAAATAATCATTTTACCACATAAA
1 GGCAAAACAGTCATTTTACCTCAT-AA
* *
67906710 GGTAAAACAGTCATTTTACCTTATAA
1 GGCAAAACAGTCATTTTACCTCATAA
* * *
67906736 GGGCAAAACAGTTATTTTCCCCCATAA
1 -GGCAAAACAGTCATTTTACCTCATAA
*
67906763 GGGCAAAACAATCATTTTACCTCATAA
1 -GGCAAAACAGTCATTTTACCTCATAA
*
67906790 GAGCAAAACAGTCA-TTTACCTTATAA
1 G-GCAAAACAGTCATTTTACCTCATAA
*
67906816 GGCAAAACAATCATTTTACCTCATAA
1 GGCAAAACAGTCATTTTACCTCATAA
* *
67906842 TGGAAAAATAGTCATTTTA
1 -GGCAAAACAGTCATTTTA
67906861 TCGATTAAGG
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
25 11 0.09
26 26 0.21
27 89 0.71
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (26 bp):
GGCAAAACAGTCATTTTACCTCATAA
Found at i:67909092 original size:12 final size:13
Alignment explanation
Indices: 67909073--67909107 Score: 63
Period size: 12 Copynumber: 2.8 Consensus size: 13
67909063 CTAATAGACA
67909073 TGGCCGTGTGCCG
1 TGGCCGTGTGCCG
67909086 T-GCCGTGTGCCG
1 TGGCCGTGTGCCG
67909098 TGGCCGTGTG
1 TGGCCGTGTG
67909108 ATACTTAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 12 0.57
13 9 0.43
ACGTcount: A:0.00, C:0.29, G:0.46, T:0.26
Consensus pattern (13 bp):
TGGCCGTGTGCCG
Found at i:67911332 original size:28 final size:28
Alignment explanation
Indices: 67911297--67911355 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
67911287 CTAGGGTATA
67911297 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
67911325 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
67911353 TCG
1 TCG
67911356 TGATCTACGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.17, C:0.12, G:0.25, T:0.46
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAGGGGTAATT
Found at i:67912983 original size:20 final size:20
Alignment explanation
Indices: 67912960--67912997 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67912950 CACATCCAAA
*
67912960 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
67912980 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
67912998 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:67921028 original size:40 final size:40
Alignment explanation
Indices: 67920984--67921093 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
67920974 TTCACAATTT
* *
67920984 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
67921024 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
67921064 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
67921094 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:67924727 original size:20 final size:20
Alignment explanation
Indices: 67924702--67924754 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
67924692 AGCAATGTAG
67924702 CACTTTAACAATTAGCTAGC
1 CACTTTAACAATTAGCTAGC
67924722 CACTTTAACAATTAGCTAGC
1 CACTTTAACAATTAGCTAGC
*
67924742 CACTTTTACAATT
1 CACTTTAACAATT
67924755 TACGCGATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.34, C:0.25, G:0.08, T:0.34
Consensus pattern (20 bp):
CACTTTAACAATTAGCTAGC
Found at i:67927612 original size:48 final size:48
Alignment explanation
Indices: 67927544--67927637 Score: 179
Period size: 48 Copynumber: 2.0 Consensus size: 48
67927534 AGTGTACAAC
67927544 CCCCTATCAGCCAATTGGTATACAACATACAGTAACAGACTGGGCCAA
1 CCCCTATCAGCCAATTGGTATACAACATACAGTAACAGACTGGGCCAA
*
67927592 CCCCTATCAGTCAATTGGTATACAACATACAGTAACAGACTGGGCC
1 CCCCTATCAGCCAATTGGTATACAACATACAGTAACAGACTGGGCC
67927638 TGAGCCTTAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (48 bp):
CCCCTATCAGCCAATTGGTATACAACATACAGTAACAGACTGGGCCAA
Found at i:67934983 original size:63 final size:64
Alignment explanation
Indices: 67934903--67935073 Score: 186
Period size: 66 Copynumber: 2.7 Consensus size: 64
67934893 AGACATTATG
* *
67934903 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAACAGAGCTACG-GATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAACAGAGCTACGAGATAA
* * * * * *
67934966 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAACAGAGCTACGAGAT
67935031 AA
63 AA
* * *
67935033 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGT
67935074 GTACAAGAGA
Statistics
Matches: 87, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
63 33 0.38
64 1 0.01
65 2 0.02
66 44 0.51
67 7 0.08
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAACAGAGCTACGAGATAA
Found at i:67939262 original size:64 final size:64
Alignment explanation
Indices: 67939182--67939365 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
67939172 AGACATTATG
* * * *
67939182 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
** * * * *
67939246 ATGTAGCTAGGTCGCATGCTTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
67939311 AA
63 AA
* * *
67939313 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
67939366 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 24 0.25
66 20 0.21
67 32 0.33
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:67941609 original size:31 final size:31
Alignment explanation
Indices: 67941571--67941665 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
67941561 CCTTTTCATA
*
67941571 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
67941602 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
67941633 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
67941664 TT
1 TT
67941666 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Done.