Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 221 of 410
Found at i:67941908 original size:24 final size:24
Alignment explanation
Indices: 67941857--67941999 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
67941847 GCTTTATCAT
*
67941857 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
67941882 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
67941906 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
67941929 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
67941953 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
67941977 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
67942000 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:67941936 original size:47 final size:48
Alignment explanation
Indices: 67941857--67941998 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
67941847 GCTTTATCAT
* *
67941857 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
67941906 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
67941953 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
67941999 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:67941957 original size:71 final size:72
Alignment explanation
Indices: 67941856--67941999 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
67941846 TGCTTTATCA
*
67941856 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
67941921 GCCCTTT
66 GCCCTTT
* * **
67941928 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
67941991 AGCCCTTT
65 AGCCCTTT
67941999 T
1 T
67942000 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:67942075 original size:20 final size:20
Alignment explanation
Indices: 67942050--67942109 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
67942040 TATGATTACC
67942050 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
67942070 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
67942090 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
67942110 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:67942080 original size:11 final size:11
Alignment explanation
Indices: 67942050--67942104 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
67942040 TATGATTACC
67942050 TCATGTGCATA
1 TCATGTGCATA
*
67942061 TCA--TACATA
1 TCATGTGCATA
67942070 TCATGTGCATA
1 TCATGTGCATA
* *
67942081 TCA--TACATT
1 TCATGTGCATA
67942090 TCATGTGCATA
1 TCATGTGCATA
67942101 TCAT
1 TCAT
67942105 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:67949267 original size:28 final size:28
Alignment explanation
Indices: 67949235--67949304 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
67949225 AATGAGATTG
67949235 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
67949263 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
67949291 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
67949305 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:67957059 original size:28 final size:28
Alignment explanation
Indices: 67957027--67957095 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
67957017 AATGAGATTG
**
67957027 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATACTA-A
*
67957055 GCACTAAGTGTGCGAGTTTGACTACTAA
1 GCACTAAGTGTGCGAGTTTGAATACTAA
67957083 GCACTAAGTGTGC
1 GCACTAAGTGTGC
67957096 AGACTTACTA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 33 0.89
29 4 0.11
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATACTAA
Found at i:67958855 original size:22 final size:22
Alignment explanation
Indices: 67958827--67958872 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
67958817 GTGTCTCAAC
67958827 TGTGTGTGACACACAGCTATGT
1 TGTGTGTGACACACAGCTATGT
67958849 TGTGTGTGACACACAGCTATGT
1 TGTGTGTGACACACAGCTATGT
67958871 TG
1 TG
67958873 CACAGTCGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (22 bp):
TGTGTGTGACACACAGCTATGT
Found at i:67964729 original size:28 final size:28
Alignment explanation
Indices: 67964697--67964765 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
67964687 GCGTAGATCA
67964697 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
* *
67964725 CGAAATTACCCCTAAAGAGCATAATTAT
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
67964753 CGATA-TACCCCTA
1 CGAAATTACCCCTA
67964766 GGGTTTTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 8 0.21
28 30 0.79
ACGTcount: A:0.42, C:0.26, G:0.10, T:0.22
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:67970383 original size:41 final size:41
Alignment explanation
Indices: 67970338--67970455 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
67970328 TGAAAGATAA
67970338 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
67970379 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67970409 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67970450 ATGTAG
1 ATGTAG
67970456 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:67970394 original size:71 final size:71
Alignment explanation
Indices: 67970306--67970469 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67970296 GAGATGTATC
67970306 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67970371 AGGACA
66 AGGACA
67970377 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67970442 AGGACA
66 AGGACA
67970448 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
67970470 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:67977972 original size:67 final size:67
Alignment explanation
Indices: 67977888--67978023 Score: 272
Period size: 67 Copynumber: 2.0 Consensus size: 67
67977878 TAGACAAGAG
67977888 AGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGA
1 AGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGA
67977953 CA
66 CA
67977955 AGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGA
1 AGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGA
67978020 CA
66 CA
67978022 AG
1 AG
67978024 AGAGCTACGA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 69 1.00
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.21
Consensus pattern (67 bp):
AGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGA
CA
Found at i:67979850 original size:124 final size:124
Alignment explanation
Indices: 67979628--67979852 Score: 310
Period size: 124 Copynumber: 1.8 Consensus size: 124
67979618 GAATTATGTG
* * * * * * * *
67979628 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCAGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATCTGTGCATGAGCAATTGAATGATACCAGG
* **
67979693 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
67979752 AAATGAAATATGAATGTCTAATGATTATTGATGTATCTGTGCATGAGCAATTGAATGATATCC-G
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATCTGTGCATGAGCAATTGAATGATA-CCAG
*
67979816 GGCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
65 GGCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
67979853 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
123 3 0.03
124 82 0.94
125 2 0.02
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATCTGTGCATGAGCAATTGAATGATACCAGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:67979895 original size:40 final size:41
Alignment explanation
Indices: 67979850--67979960 Score: 140
Period size: 40 Copynumber: 2.8 Consensus size: 41
67979840 CTGGAAATTA
* * *
67979850 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCG-TAC
*
67979891 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCGTTC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCGTAC
*
67979930 TATACGGGCTAAGACCCGAAGGC-ATTCGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGC
67979961 ACGTGGTTAT
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
39 5 0.08
40 58 0.92
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.22
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCGTAC
Found at i:67988146 original size:34 final size:35
Alignment explanation
Indices: 67988073--67988159 Score: 90
Period size: 34 Copynumber: 2.5 Consensus size: 35
67988063 AGGTAAGTAT
67988073 ATGT-AAGCTTATATTGAACTTGATTATTCGATTAC
1 ATGTGAAG-TTATATTGAACTTGATTATTCGATTAC
* * **
67988108 ATGTGAA-TTATATTGAACTT-ATATATTTGGTTTT
1 ATGTGAAGTTATATTGAACTTGAT-TATTCGATTAC
*
67988142 ATGTGAAGTTATTTTGAA
1 ATGTGAAGTTATATTGAA
67988160 TGTGCATATT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
33 2 0.05
34 27 0.61
35 13 0.30
36 2 0.05
ACGTcount: A:0.31, C:0.06, G:0.16, T:0.47
Consensus pattern (35 bp):
ATGTGAAGTTATATTGAACTTGATTATTCGATTAC
Found at i:67989875 original size:23 final size:24
Alignment explanation
Indices: 67989826--67989927 Score: 109
Period size: 30 Copynumber: 4.0 Consensus size: 24
67989816 GCTTTATCAT
*
67989826 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
67989851 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
67989874 ATAACTGGGGCATAAGCCCTTTATAA
1 ATAACTGGGGCATAAGCCCTTT-T-A
67989900 GCCCATAACTGGGGCATAAGCCCTTTTA
1 ----ATAACTGGGGCATAAGCCCTTTTA
67989928 CACTTCCTCC
Statistics
Matches: 68, Mismatches: 1, Indels: 13
0.83 0.01 0.16
Matches are distributed among these distances:
23 18 0.26
24 16 0.24
25 9 0.13
26 1 0.01
28 1 0.01
29 1 0.01
30 22 0.32
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:67990001 original size:20 final size:20
Alignment explanation
Indices: 67989976--67990042 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
67989966 TTATGAATAC
67989976 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
67989996 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
67990016 GTCATGCGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
67990036 ACCATGT
1 ATCATGT
67990043 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:67997933 original size:25 final size:25
Alignment explanation
Indices: 67997842--67997970 Score: 149
Period size: 25 Copynumber: 5.2 Consensus size: 25
67997832 AGCATAGCTG
*
67997842 CTTTATCATATAACTGGAGGCCT-AGCC
1 CTTTATC--ATAACTGG-GGCATAAGCC
*
67997869 TCTTT-TAATAACTGGGGCA-AAGCC
1 -CTTTATCATAACTGGGGCATAAGCC
*
67997893 CTTT-TAATAACTGGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCC
*
67997917 CTTTATCATAATTGGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCC
*
67997942 CTTTATCATAACTGAGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCC
67997967 CTTT
1 CTTT
67997971 TACACTTCCT
Statistics
Matches: 92, Mismatches: 6, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
23 18 0.20
24 16 0.17
25 53 0.58
27 1 0.01
28 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (25 bp):
CTTTATCATAACTGGGGCATAAGCC
Found at i:67997933 original size:48 final size:49
Alignment explanation
Indices: 67997842--67997972 Score: 151
Period size: 48 Copynumber: 2.6 Consensus size: 49
67997832 AGCATAGCTG
*
67997842 CTTTATCATATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCC
1 CTTTAT-A-ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCC
* *
67997893 CTTT-TAATAACTGGGGCATAAGCCCTTTATCATAATTGGGGCATAAGCC
1 CTTTATAATAACTGGGGCATAAGCCCTTT-TAATAACTGGGGCATAAGCC
* *
67997942 CTTTATCATAACTGAGGCATAAGCCCTTTTA
1 CTTTATAATAACTGGGGCATAAGCCCTTTTA
67997973 CACTTCCTCC
Statistics
Matches: 70, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
47 8 0.11
48 24 0.34
49 11 0.16
50 23 0.33
51 4 0.06
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (49 bp):
CTTTATAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
Found at i:67998046 original size:20 final size:20
Alignment explanation
Indices: 67998021--67998087 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
67998011 TTATGAATAC
67998021 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
67998041 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
67998061 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
67998081 ACCATGT
1 ATCATGT
67998088 TTATTAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:67998052 original size:11 final size:11
Alignment explanation
Indices: 67998021--67998076 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
67998011 TTATGAATAC
67998021 ATCATGTGCAT
1 ATCATGTGCAT
*
67998032 ATCA--TACAT
1 ATCATGTGCAT
67998041 ATCATGTGCAT
1 ATCATGTGCAT
*
67998052 ATCA--TACAT
1 ATCATGTGCAT
*
67998061 GTCATGTGCAT
1 ATCATGTGCAT
67998072 ATCAT
1 ATCAT
67998077 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:68000187 original size:76 final size:76
Alignment explanation
Indices: 68000093--68000247 Score: 283
Period size: 76 Copynumber: 2.0 Consensus size: 76
68000083 GAATAGTGAT
*
68000093 TTTATGTAATAGTACACCATGACCATTATATGCATTTTTGAAAAATTGATAATTATGTGTACATA
1 TTTATGTAATAGTACACCATGACCATTATATACATTTTTGAAAAATTGATAATTATGTGTACATA
68000158 TATACATGTAC
66 TATACATGTAC
* *
68000169 TTTATGTAATAGTACACCATGAGCATTATATACATTTTTGAAAAATTGATAATTATGTGTACGTA
1 TTTATGTAATAGTACACCATGACCATTATATACATTTTTGAAAAATTGATAATTATGTGTACATA
68000234 TATACATGTAC
66 TATACATGTAC
68000245 TTT
1 TTT
68000248 GATTGTTAAT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.41
Consensus pattern (76 bp):
TTTATGTAATAGTACACCATGACCATTATATACATTTTTGAAAAATTGATAATTATGTGTACATA
TATACATGTAC
Found at i:68001214 original size:6 final size:6
Alignment explanation
Indices: 68001203--68001228 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
68001193 TATCATAACT
68001203 AGAATC AGAATC AGAATC AGAATC AG
1 AGAATC AGAATC AGAATC AGAATC AG
68001229 GTGATAGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.19, T:0.15
Consensus pattern (6 bp):
AGAATC
Found at i:68001405 original size:27 final size:26
Alignment explanation
Indices: 68001368--68001433 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
68001358 AGCATGGCTG
*
68001368 CCAGAACAGATATCGTGAAAGAGTCA
1 CCAGAACAGATATCGTGAAAGAGCCA
* **
68001394 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGAAAGAGCCA
68001421 CCAGAATCAGATA
1 CCAGAA-CAGATA
68001434 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGAAAGAGCCA
Found at i:68001438 original size:27 final size:27
Alignment explanation
Indices: 68001387--68001441 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
68001377 ATATCGTGAA
* *
68001387 AGAGTCACCAGATACAGATATTGTGGC
1 AGAGCCACCAGATACAGATAATGTGGC
68001414 AGAGCCACCAGA-ATCAGATAATGTGGC
1 AGAGCCACCAGATA-CAGATAATGTGGC
68001441 A
1 A
68001442 AACCCACCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 24 0.96
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.18
Consensus pattern (27 bp):
AGAGCCACCAGATACAGATAATGTGGC
Found at i:68001448 original size:27 final size:27
Alignment explanation
Indices: 68001392--68001449 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
68001382 GTGAAAGAGT
* * *
68001392 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
68001419 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
68001446 CACC
1 CACC
68001450 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:68001653 original size:22 final size:22
Alignment explanation
Indices: 68001605--68001663 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
68001595 GTAAATACGT
68001605 TTGGCACAAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
68001627 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
68001649 TTGGCACAAAACCAT
1 TTGGCACAAAGCCAT
68001664 TAACAACGGG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:68001830 original size:27 final size:26
Alignment explanation
Indices: 68001751--68001833 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
68001741 TCGATCGGTC
* * *
68001751 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
68001777 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
68001804 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
68001831 AAC
1 AAC
68001834 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:68002093 original size:27 final size:27
Alignment explanation
Indices: 68002032--68002226 Score: 212
Period size: 27 Copynumber: 7.3 Consensus size: 27
68002022 GGGGCAAAAT
* * *
68002032 GGTAATTTTACCC-ACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
68002058 TGTAATTCTACCCTACAGGGGTACTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
68002085 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
68002112 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
68002139 GGTATTTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
68002166 TGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
68002193 GGAAACTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
68002220 AGTAATT
1 GGTAATT
68002227 TTACAATTAA
Statistics
Matches: 138, Mismatches: 30, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
26 11 0.08
27 127 0.92
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:68002108 original size:54 final size:54
Alignment explanation
Indices: 68002036--68002226 Score: 253
Period size: 54 Copynumber: 3.6 Consensus size: 54
68002026 CAAAATGGTA
* * *
68002036 ATTT-TACCC-ACAAGGGTATCTCTGTAATTCTACCCTACAGGGGTACTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCTGTAATTCTACCCTATAGGGGTATTTCGGT
68002088 ATTTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTATAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCTG-TAATTCTACCCTATAGGGGTATTTCGGT
* * * *
68002142 ATTTCTATCCTATAAGGGTATTTCTGTAATTCTACCCTATAGGGGTATTTTGGA
1 ATTTCTACCCTACAAGGGTATTTCTGTAATTCTACCCTATAGGGGTATTTCGGT
** * *
68002196 AACTCTACCCTACAGGGGTATTTCAGTAATT
1 ATTTCTACCCTACAAGGGTATTTCTGTAATT
68002227 TTACAATTAA
Statistics
Matches: 122, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
52 4 0.03
53 6 0.05
54 111 0.91
55 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCTGTAATTCTACCCTATAGGGGTATTTCGGT
Found at i:68002268 original size:27 final size:27
Alignment explanation
Indices: 68002236--68002671 Score: 486
Period size: 27 Copynumber: 16.1 Consensus size: 27
68002226 TTTACAATTA
68002236 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
68002263 AGGGTAAAACGATAATTTTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
* * *
68002290 AGGGTAAACCAGTAATTCTGTAAATCA
1 AGGGTAAAACGGTAATTCTGTAAATCG
* * **
68002317 AGGGTAAAACAGTAATTTTACAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
68002344 AGGGTAAAACGGTAATTTTGTAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
68002371 AAGGTAAAACAGTAATTCTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
*
68002398 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
** *
68002425 AGGGTAAAATAGCAATTCTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
*
68002452 AGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
** * *
68002479 AGGGTAAAATAGTAATTCTATAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATCG
68002506 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
68002533 AGGGTAAAACGGTAATTCTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
*
68002560 GGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
68002587 AGGGTAAAACGATAATTTTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
* * * *
68002614 AGGGTTAACCAGTAATTCTGTAAATCA
1 AGGGTAAAACGGTAATTCTGTAAATCG
* * * * *
68002641 AGGGTATAACAGTAATTTTATAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATCG
68002668 AGGG
1 AGGG
68002672 CATTTCAGTA
Statistics
Matches: 342, Mismatches: 57, Indels: 20
0.82 0.14 0.05
Matches are distributed among these distances:
26 4 0.01
27 333 0.97
28 5 0.01
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTGTAAATCG
Found at i:68002342 original size:81 final size:81
Alignment explanation
Indices: 68002219--68002671 Score: 540
Period size: 81 Copynumber: 5.6 Consensus size: 81
68002209 AGGGGTATTT
* * *
68002219 CAGTAATT-T-TACAATTAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTT
1 CAGTAATTCTGTA-AATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTTT
*
68002282 GTAAACTGAGGGTAAAC
65 GTAAACTGAGGGTAAAA
* * *
68002299 CAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTTTACAAATCGAGGGTAAAACGGTAATTTTG
1 CAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTTTG
* *
68002364 TAAATTGAAGGTAAAA
66 TAAACTGAGGGTAAAA
* * * * *
68002380 CAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA-TAGCAATTC
1 CAGTAATTCTGTAAATC-AAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGA-TAATTT
68002443 TGTAAACTGAGGGTAAAA
64 TGTAAACTGAGGGTAAAA
* * * * * * *
68002461 CGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATTGAGGGTAAAACGGTAATTCTG
1 CAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTTTG
68002526 TAAA-TCGAGGGTAAAA
66 TAAACT-GAGGGTAAAA
* ** * *
68002542 CGGTAATTCTGTAAA-CTGGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTT
1 CAGTAATTCTGTAAATC-AAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTTT
* *
68002606 GTAAACTGAGGGTTAAC
65 GTAAACTGAGGGTAAAA
* * *
68002623 CAGTAATTCTGTAAATCAAGGGTATAACAGTAATTTTATAAATTGAGGG
1 CAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGG
68002672 CATTTCAGTA
Statistics
Matches: 318, Mismatches: 45, Indels: 19
0.83 0.12 0.05
Matches are distributed among these distances:
80 11 0.03
81 302 0.95
82 5 0.02
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (81 bp):
CAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTTTG
TAAACTGAGGGTAAAA
Found at i:68002684 original size:54 final size:54
Alignment explanation
Indices: 68002236--68002671 Score: 574
Period size: 54 Copynumber: 8.1 Consensus size: 54
68002226 TTTACAATTA
*
68002236 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC-GATAATTTTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAACTG
* * * *
68002290 AGGGTAAACCAGTAATTCTGTAAATCAAGGGTAAAACAGTAATT-T-TACAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA-AACT-G
* * *
68002344 AGGGTAAAACGGTAATTTTGTAAATTGAAGGTAAAACAGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
* * *
68002398 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGCAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
* * * *
68002452 AGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
*
68002506 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
* *
68002560 GGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC-GATAATTTTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAACTG
* * * * * * * *
68002614 AGGGTTAACCAGTAATTCTGTAAATCAAGGGTATAACAGTAATTTTATAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
68002668 AGGG
1 AGGG
68002672 CATTTCAGTA
Statistics
Matches: 338, Mismatches: 37, Indels: 14
0.87 0.10 0.04
Matches are distributed among these distances:
52 2 0.01
53 5 0.01
54 323 0.96
55 6 0.02
56 2 0.01
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.28
Consensus pattern (54 bp):
AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
Found at i:68004356 original size:47 final size:47
Alignment explanation
Indices: 68004312--68004443 Score: 144
Period size: 47 Copynumber: 2.7 Consensus size: 47
68004302 TCTAGCTATG
*
68004312 AACAGTAAGCTC-TATTGAGCTGAAATGGTAAGCTCT-GACGAGCTAAA
1 AACAGTAAGCTCTTA-TGAGCTGAAATGGTAAGCTCTCAACGAGCT-AA
* * **
68004359 AATAGTAAGCTTTTATGAGCTGAAACAGTAAGCT-TCAACGAGCTGAA
1 AACAGTAAGCTCTTATGAGCTGAAATGGTAAGCTCTCAACGAGCT-AA
68004406 AACAGTAAGCTCTTATGAGCTGATATATCGGTAAGCTC
1 AACAGTAAGCTCTTATGAGCTGA-A-AT-GGTAAGCTC
68004444 GTTCGAGCTG
Statistics
Matches: 69, Mismatches: 10, Indels: 8
0.79 0.11 0.09
Matches are distributed among these distances:
46 1 0.01
47 57 0.83
48 3 0.04
49 1 0.01
50 7 0.10
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.26
Consensus pattern (47 bp):
AACAGTAAGCTCTTATGAGCTGAAATGGTAAGCTCTCAACGAGCTAA
Found at i:68004366 original size:24 final size:23
Alignment explanation
Indices: 68004312--68004418 Score: 81
Period size: 23 Copynumber: 4.6 Consensus size: 23
68004302 TCTAGCTATG
** *
68004312 AACAGTAAGCTCTATTGAGCTGA
1 AACAGTAAGCTCTAACGAGCTAA
** *
68004335 AATGGTAAGCTCTGACGAGCTAAA
1 AACAGTAAGCTCTAACGAGCT-AA
* * * * *
68004359 AATAGTAAGCTTTTATGAGCTGA
1 AACAGTAAGCTCTAACGAGCTAA
68004382 AACAGTAAGCT-TCAACGAGCTGAA
1 AACAGTAAGCTCT-AACGAGCT-AA
68004406 AACAGTAAGCTCT
1 AACAGTAAGCTCT
68004419 TATGAGCTGA
Statistics
Matches: 65, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
22 1 0.02
23 33 0.51
24 30 0.46
25 1 0.02
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.24
Consensus pattern (23 bp):
AACAGTAAGCTCTAACGAGCTAA
Found at i:68004425 original size:24 final size:24
Alignment explanation
Indices: 68004312--68004428 Score: 107
Period size: 24 Copynumber: 5.0 Consensus size: 24
68004302 TCTAGCTATG
68004312 AACAGTAAGCTC-TATTGAGCTG-A
1 AACAGTAAGCTCTTA-TGAGCTGAA
** * * *
68004335 AATGGTAAGCTCTGACGAGCTAAA
1 AACAGTAAGCTCTTATGAGCTGAA
* *
68004359 AATAGTAAGCTTTTATGAGCTG-A
1 AACAGTAAGCTCTTATGAGCTGAA
* *
68004382 AACAGTAAGCT-TCAACGAGCTGAA
1 AACAGTAAGCTCT-TATGAGCTGAA
68004406 AACAGTAAGCTCTTATGAGCTGA
1 AACAGTAAGCTCTTATGAGCTGA
68004429 TATATCGGTA
Statistics
Matches: 74, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
22 1 0.01
23 33 0.45
24 39 0.53
25 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (24 bp):
AACAGTAAGCTCTTATGAGCTGAA
Found at i:68008121 original size:26 final size:26
Alignment explanation
Indices: 68008092--68008147 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
68008082 TCAAATATAA
68008092 TCATACATCTCA-TAGGGGCATAACAG
1 TCAT-CATCTCACTAGGGGCATAACAG
** *
68008118 TCATTTTCTCACTAGGGGCATAATAG
1 TCATCATCTCACTAGGGGCATAACAG
68008144 TCAT
1 TCAT
68008148 TTTATCAACT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TCATCATCTCACTAGGGGCATAACAG
Found at i:68008148 original size:26 final size:26
Alignment explanation
Indices: 68008099--68008162 Score: 94
Period size: 26 Copynumber: 2.5 Consensus size: 26
68008089 TAATCATACA
68008099 TCTCA-TAGGGGCATAACAGTCATTT
1 TCTCACTAGGGGCATAACAGTCATTT
*
68008124 TCTCACTAGGGGCATAATAGTCATTT
1 TCTCACTAGGGGCATAACAGTCATTT
*
68008150 TATCAACTAGGGG
1 TCTC-ACTAGGGG
68008163 GTCTAGGCAC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 5 0.14
26 22 0.63
27 8 0.23
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (26 bp):
TCTCACTAGGGGCATAACAGTCATTT
Found at i:68014160 original size:27 final size:28
Alignment explanation
Indices: 68014130--68014199 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
68014120 ATAATAAGTC
*
68014130 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
68014157 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
68014185 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68014200 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68018901 original size:27 final size:27
Alignment explanation
Indices: 68018871--68018930 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
68018861 ATACATCTCA
68018871 TAGGGGCATAATAGTCATTTTACCAAC
1 TAGGGGCATAATAGTCATTTTACCAAC
*
68018898 TAGGGGCATAATAGTCATTTTATCAAC
1 TAGGGGCATAATAGTCATTTTACCAAC
68018925 TAGGGG
1 TAGGGG
68018931 GACTAGGTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (27 bp):
TAGGGGCATAATAGTCATTTTACCAAC
Found at i:68021446 original size:41 final size:41
Alignment explanation
Indices: 68021389--68021571 Score: 214
Period size: 41 Copynumber: 4.5 Consensus size: 41
68021379 AGCTTGGGTT
*
68021389 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAATTA
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTA
* *
68021430 CGAAGGGCTTTTGAGCCAGTGCTAATAACCAAACTTAGTTT
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTA
* * *
68021471 CGAAGGGCTTTTGAGCCAGTG-TCATAACCGGACTTAGTTC
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTA
* * * *
68021511 CGAAGGGCCTTCGAGCCAGTGGCCTAAT--CCGAGCTTGGTCT-
1 CGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGT-TA
68021552 CGAAGGGC-TTTGAGCCAGTG
1 CGAAGGGCTTTTGAGCCAGTG
68021572 TTAAGAATCT
Statistics
Matches: 124, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 43 0.35
41 76 0.61
42 1 0.01
43 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTA
Found at i:68021527 original size:81 final size:81
Alignment explanation
Indices: 68021387--68021572 Score: 234
Period size: 81 Copynumber: 2.3 Consensus size: 81
68021377 CGAGCTTGGG
* *
68021387 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAATTACGAAGGGCTTTTGAGCCAGT-G
1 TTCGAAGGGCTTTTGAGCCAGTG-TAATAACCGAACTTAATTACGAAGGGCCTTCGAGCCAGTGG
68021451 -CTAATAACCAAACTTAGT
65 CCTAAT--CCAAACTTAGT
* * * *
68021469 TTCGAAGGGCTTTTGAGCCAGTGTCATAACCGGACTTAGTTCCGAAGGGCCTTCGAGCCAGTGGC
1 TTCGAAGGGCTTTTGAGCCAGTGTAATAACCGAACTTAATTACGAAGGGCCTTCGAGCCAGTGGC
* * *
68021534 CTAATCCGAGCTTGGT
66 CTAATCCAAACTTAGT
*
68021550 CTCGAAGGGC-TTTGAGCCAGTGT
1 TTCGAAGGGCTTTTGAGCCAGTGT
68021573 TAAGAATCTT
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
80 13 0.14
81 50 0.54
82 24 0.26
83 5 0.05
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (81 bp):
TTCGAAGGGCTTTTGAGCCAGTGTAATAACCGAACTTAATTACGAAGGGCCTTCGAGCCAGTGGC
CTAATCCAAACTTAGT
Found at i:68021593 original size:81 final size:77
Alignment explanation
Indices: 68021373--68021598 Score: 220
Period size: 81 Copynumber: 2.8 Consensus size: 77
68021363 TCGGGGTGTA
* *
68021373 AATCCGAGCTTGGGTTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAATTACGAAGGGC
1 AATCCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTG-TAATAACC-AGCTTAATTCCGAAGGGC
* *
68021438 TTTTGAGCCAGTGCT
63 CTTCGAGCCAGTGCT
* * * * * *
68021453 AATAACCAAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGTCATAACCGGACTTAGTTCCGAAGGG
1 AAT--CCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTGTAATAACCAG-CTTAATTCCGAAGGG
68021518 CCTTCGAGCCAGTGGCCT
62 CCTTCGAGCCAGT-G-CT
* **
68021536 AATCCGAGCTTGGTCTCGAAGGGC-TTTGAGCCAGTGTTAAGAATCTTGCTTAATTCCGAAGGG
1 AATCCGAGCTTGGT-TCGAAGGGCTTTTGAGCCAGTG-TAATAA-CCAGCTTAATTCCGAAGGG
68021599 TGGTTGTGCC
Statistics
Matches: 119, Mismatches: 19, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
80 17 0.14
81 64 0.54
82 33 0.28
83 5 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (77 bp):
AATCCGAGCTTGGTTCGAAGGGCTTTTGAGCCAGTGTAATAACCAGCTTAATTCCGAAGGGCCTT
CGAGCCAGTGCT
Found at i:68023424 original size:40 final size:39
Alignment explanation
Indices: 68023333--68023483 Score: 119
Period size: 40 Copynumber: 3.8 Consensus size: 39
68023323 ATAACCATGT
* * *
68023333 GCACAAATGCCTTCGGGTCTTAGCCTGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
68023373 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
68023413 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
68023453 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAA-TGCCTTCGGG-TCTTAGCCCGGATA
68023484 TCATTCAATT
Statistics
Matches: 91, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 84 0.92
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.28
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:68023467 original size:80 final size:80
Alignment explanation
Indices: 68023333--68023482 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
68023323 ATAACCATGT
* *
68023333 GCACAAATGCCTTCGGGTCTTAGCCTGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
68023397 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
68023413 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
68023476 CCCGGAT
64 CCCGGAT
68023483 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 3 0.05
80 56 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:68027327 original size:18 final size:18
Alignment explanation
Indices: 68027304--68027339 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
68027294 TAGTACTTGT
68027304 CGAACGAGCTTGCAAAGC
1 CGAACGAGCTTGCAAAGC
68027322 CGAACGAGCTTGCAAAGC
1 CGAACGAGCTTGCAAAGC
68027340 TGAAGTGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.28, G:0.28, T:0.11
Consensus pattern (18 bp):
CGAACGAGCTTGCAAAGC
Found at i:68029740 original size:23 final size:23
Alignment explanation
Indices: 68029710--68029771 Score: 79
Period size: 24 Copynumber: 2.7 Consensus size: 23
68029700 ACCAAACGTT
* * **
68029710 GCACACATAGTGCTTATTATGTC
1 GCACACATAGTGCATAGTAAATC
68029733 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CATAGTAAATC
68029757 GCACACATAGTGCAT
1 GCACACATAGTGCAT
68029772 TCGAGATAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 15 0.44
24 19 0.56
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (23 bp):
GCACACATAGTGCATAGTAAATC
Found at i:68037539 original size:24 final size:24
Alignment explanation
Indices: 68037512--68037573 Score: 106
Period size: 24 Copynumber: 2.6 Consensus size: 24
68037502 TTATTATGTC
68037512 CGCACACATAGTGCCAGAGTAAAT
1 CGCACACATAGTGCCAGAGTAAAT
*
68037536 CGCACACATAGTGCCATAGTAAAT
1 CGCACACATAGTGCCAGAGTAAAT
*
68037560 CGTACACATAGTGC
1 CGCACACATAGTGC
68037574 ATTCGAGATA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.19
Consensus pattern (24 bp):
CGCACACATAGTGCCAGAGTAAAT
Found at i:68041491 original size:28 final size:28
Alignment explanation
Indices: 68041443--68041533 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
68041433 GTGACAGAGT
*
68041443 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
*
68041472 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
68041500 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
68041528 CACCAG
1 CACCAG
68041534 GACGCTTCCT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:68041686 original size:28 final size:28
Alignment explanation
Indices: 68041639--68041703 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
68041629 AAATTAACCC
*
68041639 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
68041667 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
68041695 TAGGGGTAT
1 TAGGGGTAT
68041704 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:68049355 original size:26 final size:27
Alignment explanation
Indices: 68049280--68049393 Score: 108
Period size: 26 Copynumber: 4.1 Consensus size: 27
68049270 AGCATGGCTG
* * * *
68049280 CCAGATACAGAAAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGTGCCA
*
68049307 CCAGATACAGATATTTTGTGGCAGTGCCA
1 CCAGATACAGATA--ATGTGGCAGTGCCA
*
68049336 CCAGA-ACAGATAATGTGGCAGGGCCA
1 CCAGATACAGATAATGTGGCAGTGCCA
68049362 CCAGA-ACAGATAATTTGTGGCA-TAGCCA
1 CCAGATACAGATAA--TGTGGCAGT-GCCA
68049390 CCAG
1 CCAG
68049394 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
26 25 0.34
27 12 0.16
28 22 0.30
29 15 0.20
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGTGCCA
Found at i:68049389 original size:28 final size:27
Alignment explanation
Indices: 68049305--68049393 Score: 110
Period size: 26 Copynumber: 3.2 Consensus size: 27
68049295 GTGACAGAGT
*
68049305 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
*
68049334 CACCAGAACAGATAA--TGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
68049360 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
68049388 CACCAG
1 CACCAG
68049394 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
26 25 0.46
28 22 0.41
29 7 0.13
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:68049390 original size:54 final size:56
Alignment explanation
Indices: 68049280--68049393 Score: 153
Period size: 54 Copynumber: 2.1 Consensus size: 56
68049270 AGCATGGCTG
* *
68049280 CCAGATACAGAAAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGTGCCA
1 CCAGATACAGAAAATGTGACAGAGCCACCAGATACAGATAATTTGTGGCAGTGCCA
* * *
68049336 CCAGA-ACAGATAATGTGGCAGGGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
1 CCAGATACAGAAAATGTGACAGAGCCACCAGATACAGATAATTTGTGGCAGT-GCCA
68049390 CCAG
1 CCAG
68049394 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
53 1 0.02
54 24 0.46
55 22 0.42
56 5 0.10
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (56 bp):
CCAGATACAGAAAATGTGACAGAGCCACCAGATACAGATAATTTGTGGCAGTGCCA
Found at i:68049546 original size:28 final size:28
Alignment explanation
Indices: 68049499--68049563 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
68049489 AAATTAACCC
*
68049499 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
68049527 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
68049555 TAGGGGTAT
1 TAGGGGTAT
68049564 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:68064712 original size:43 final size:43
Alignment explanation
Indices: 68064660--68064746 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 43
68064650 ATATGTGATT
** *
68064660 TCGATATGTGTTTACGA-GTAAGACCCTATCTGGGACAG-TGGCA
1 TCGATATGTGACTA-GATGTAAGACCATATCTGGGAC-GTTGGCA
*
68064703 TCGATATGTGACTATATGTAAGACCATATCTGGGACGTTGGCA
1 TCGATATGTGACTAGATGTAAGACCATATCTGGGACGTTGGCA
68064746 T
1 T
68064747 TATACGACTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
42 2 0.05
43 36 0.95
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (43 bp):
TCGATATGTGACTAGATGTAAGACCATATCTGGGACGTTGGCA
Found at i:68075225 original size:47 final size:47
Alignment explanation
Indices: 68075174--68075415 Score: 358
Period size: 47 Copynumber: 5.1 Consensus size: 47
68075164 TTAGGATTTT
*
68075174 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
68075221 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
68075272 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
68075319 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
68075366 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
68075413 ATG
1 ATG
68075416 CGAAATGTGT
Statistics
Matches: 178, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
47 133 0.75
49 2 0.01
51 43 0.24
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:68075276 original size:24 final size:24
Alignment explanation
Indices: 68075248--68075323 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
68075238 CCGTATATAT
68075248 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
68075272 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
68075295 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
68075319 ATGTG
1 ATGTG
68075324 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:68075525 original size:46 final size:46
Alignment explanation
Indices: 68075389--68075525 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
68075379 GAACATGTAT
* *
68075389 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
68075435 ATATGAGGTAAAGCTGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
68075481 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
68075526 TGTATATATA
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:68075779 original size:37 final size:37
Alignment explanation
Indices: 68075671--68075779 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
68075661 GGAAATATAT
*
68075671 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
68075708 TCCGGGTAAGACCCGATGACTACGTATGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
68075745 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
68075780 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:68083158 original size:29 final size:29
Alignment explanation
Indices: 68083124--68083255 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
68083114 TACTCGATTT
** * *
68083124 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
68083153 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
68083182 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
68083211 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
68083240 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
68083256 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:68090638 original size:29 final size:29
Alignment explanation
Indices: 68090604--68090735 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
68090594 TACTCGATTT
** * *
68090604 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
68090633 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
68090662 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
68090691 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
68090720 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
68090736 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:68098669 original size:29 final size:29
Alignment explanation
Indices: 68098641--68098743 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
68098631 CCTCCGAGCT
** * * *
68098641 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
68098670 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
68098699 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
68098728 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
68098744 ATCTCGACAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:68100579 original size:20 final size:20
Alignment explanation
Indices: 68100541--68100579 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
68100531 TAGAGTAGGA
* **
68100541 ATATCGATACCTTTGGAAAT
1 ATATAGATACCTTAAGAAAT
68100561 ATATAGATACCTTAAGAAA
1 ATATAGATACCTTAAGAAA
68100580 AGTATTGAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.31
Consensus pattern (20 bp):
ATATAGATACCTTAAGAAAT
Found at i:68103352 original size:39 final size:40
Alignment explanation
Indices: 68103264--68103467 Score: 333
Period size: 39 Copynumber: 5.2 Consensus size: 40
68103254 GGACTAAGAT
* * *
68103264 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
68103304 CCGAAGGCATTTGTGCGAGTTACTATATCCGGG-TAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
68103343 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
68103383 CCGAAGGCATTTGTGC-AGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
** *
68103422 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
68103461 CCGAAGG
1 CCGAAGG
68103468 TACTTGGGTT
Statistics
Matches: 157, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
39 93 0.59
40 64 0.41
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:68103395 original size:79 final size:79
Alignment explanation
Indices: 68103264--68103467 Score: 331
Period size: 79 Copynumber: 2.6 Consensus size: 79
68103254 GGACTAAGAT
* * *
68103264 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTTACTA
68103329 TATCCGGG-TAAGTC
65 TATCCGGGCTAAGTC
68103343 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAGTTACTAT
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAGTTACTAT
68103408 ATCCGGGCTAAGTC
66 ATCCGGGCTAAGTC
** *
68103422 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATCCCGAAGG
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
68103468 TACTTGGGTT
Statistics
Matches: 118, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
78 31 0.26
79 87 0.74
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAGTTACTAT
ATCCGGGCTAAGTC
Found at i:68111298 original size:40 final size:40
Alignment explanation
Indices: 68111243--68111448 Score: 342
Period size: 40 Copynumber: 5.2 Consensus size: 40
68111233 GGACTAAGAT
* * *
68111243 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
68111283 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
68111323 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
68111363 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
** *
68111403 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
68111442 CCGAAGG
1 CCGAAGG
68111449 TACTTGGGTT
Statistics
Matches: 160, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
39 15 0.09
40 145 0.91
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:68114711 original size:20 final size:20
Alignment explanation
Indices: 68114673--68114711 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
68114663 TGGAGCAGGG
**
68114673 ATATCAATACCTTTGGAAAT
1 ATATCAATACCTTAAGAAAT
*
68114693 ATATCGATACCTTAAGAAA
1 ATATCAATACCTTAAGAAA
68114712 AGTATAGATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (20 bp):
ATATCAATACCTTAAGAAAT
Found at i:68118861 original size:45 final size:45
Alignment explanation
Indices: 68118797--68118970 Score: 217
Period size: 45 Copynumber: 3.8 Consensus size: 45
68118787 TGTAACCCGC
*
68118797 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
*
68118842 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
68118888 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
68118935 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
68118971 ATGCCCAATA
Statistics
Matches: 110, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 36 0.33
46 33 0.30
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:68118963 original size:93 final size:92
Alignment explanation
Indices: 68118805--68118975 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 92
68118795 GCCCATAAGT
*
68118805 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
68118870 GAGCTCGGATGCCTAGTTACATCTCTC
66 GAGCTCGGATGCCTAGTTACATCTCTC
*
68118897 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
68118962 CGAGTTCGGATGCC
65 CGAGCTCGGATGCC
68118976 CAATATCCTA
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 27 0.36
93 48 0.64
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:68124410 original size:93 final size:93
Alignment explanation
Indices: 68124298--68124469 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
68124288 GCCCATAAGT
* *
68124298 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68124363 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
68124391 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
68124456 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
68124470 CAATATCCTA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:68124465 original size:46 final size:46
Alignment explanation
Indices: 68124290--68124465 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
68124280 TGTAACCCGC
* *
68124290 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
68124336 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
68124382 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
68124429 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
68124466 TGCCCAATAT
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:68128466 original size:40 final size:40
Alignment explanation
Indices: 68128382--68128566 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
68128372 TCGAATGATG
* *
68128382 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
68128421 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
68128462 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
68128501 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
68128540 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
68128567 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:68128518 original size:79 final size:81
Alignment explanation
Indices: 68128382--68128564 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
68128372 TCGAATGATG
* * *
68128382 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
68128446 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
68128461 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACCAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
68128523 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
68128541 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
68128565 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:68128588 original size:79 final size:78
Alignment explanation
Indices: 68128383--68128599 Score: 228
Period size: 79 Copynumber: 2.7 Consensus size: 78
68128373 CGAATGATGT
* *
68128383 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
68128446 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* * *
68128463 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CCAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
68128526 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
68128542 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
68128600 TACGTGATTT
Statistics
Matches: 115, Mismatches: 13, Indels: 19
0.78 0.09 0.13
Matches are distributed among these distances:
78 3 0.03
79 67 0.58
80 45 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:68133223 original size:46 final size:46
Alignment explanation
Indices: 68133148--68133370 Score: 272
Period size: 46 Copynumber: 4.8 Consensus size: 46
68133138 TGTAACCCGC
* * *
68133148 CCATAAGTGAACTCGGGACTCAACTCAACGAGCTCGGGCATTGGCAT
1 CCATAAGTGAACTC-GGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
68133195 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* *** * *
68133241 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACTTTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
68133288 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
68133334 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68133371 TGCCCAATTA
Statistics
Matches: 151, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
46 99 0.66
47 44 0.29
49 3 0.02
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:68139869 original size:49 final size:49
Alignment explanation
Indices: 68139811--68140336 Score: 861
Period size: 49 Copynumber: 10.9 Consensus size: 49
68139801 GTATGAGATG
* *
68139811 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
* *
68139860 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAACGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
68139909 TATATATGTGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGAGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
68139958 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
68140005 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
68140054 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
* *
68140101 GATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
68140150 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
68140197 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
* * *
68140244 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
68140293 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
68140337 TATATGTGTG
Statistics
Matches: 449, Mismatches: 22, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
47 179 0.40
49 270 0.60
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.28
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
Found at i:68140036 original size:96 final size:96
Alignment explanation
Indices: 68139810--68140336 Score: 896
Period size: 96 Copynumber: 5.5 Consensus size: 96
68139800 TGTATGAGAT
* *
68139810 GTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
* *
68139875 GCCTAATGGCCAATGTGATGAACGTGAAAGT
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
* *
68139906 GTATATATATGTGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGAGTATATACATGTGATA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATA
68139971 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
64 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
68140004 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
68140069 GCCTAATGGCCAATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
*
68140100 GGATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
68140165 GCCTAATGGCCAATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
*
68140196 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATAT--ATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
* * *
68140259 GCCTAATGGCCGATGTGATGAATGTGAAGGT
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
*
68140290 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
68140337 TATATGTGTG
Statistics
Matches: 412, Mismatches: 15, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
94 39 0.09
96 283 0.69
98 90 0.22
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.28
Consensus pattern (96 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:68140087 original size:22 final size:22
Alignment explanation
Indices: 68140059--68140134 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
68140049 GTGTATATAC
68140059 ATGTGATAAGGCCTAATGGCCA
1 ATGTGATAAGGCCTAATGGCCA
* *** * **
68140081 ATGTGATGAATGTGAAAGAGGATA
1 ATGTGAT-AAGGCCTAA-TGGCCA
68140105 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCTAATGGCCA
68140128 ATGTGAT
1 ATGTGAT
68140135 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCA
Found at i:68140385 original size:48 final size:48
Alignment explanation
Indices: 68140328--68140479 Score: 286
Period size: 48 Copynumber: 3.2 Consensus size: 48
68140318 CGATGTGATG
*
68140328 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
68140376 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
68140424 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
68140472 AATGTGAA
1 AATGTGAA
68140480 TGTTGTAACA
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 102 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:68140573 original size:37 final size:37
Alignment explanation
Indices: 68140519--68140599 Score: 144
Period size: 37 Copynumber: 2.2 Consensus size: 37
68140509 AACTTGGAAA
*
68140519 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
68140557 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
68140594 TATGTC
1 TATGTC
68140600 TGACTACGTG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
37 38 0.90
38 4 0.10
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.27
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:68140607 original size:23 final size:23
Alignment explanation
Indices: 68140577--68140622 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
68140567 TAAGACCCGA
68140577 TGACTACGTGTGGAGATTATGTC
1 TGACTACGTGTGGAGATTATGTC
68140600 TGACTACGTGTGGAGATTATGTC
1 TGACTACGTGTGGAGATTATGTC
68140623 CGGGTAAGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.13, G:0.30, T:0.35
Consensus pattern (23 bp):
TGACTACGTGTGGAGATTATGTC
Found at i:68140613 original size:60 final size:60
Alignment explanation
Indices: 68140540--68140659 Score: 240
Period size: 60 Copynumber: 2.0 Consensus size: 60
68140530 TGAGACCCGA
68140540 TGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 TGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
68140600 TGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 TGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
68140660 CGGGTAAGAC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (60 bp):
TGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
Found at i:68150048 original size:30 final size:30
Alignment explanation
Indices: 68150014--68150074 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
68150004 TCCTTAACTC
68150014 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
68150044 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
68150074 A
1 A
68150075 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:68152330 original size:101 final size:100
Alignment explanation
Indices: 68152141--68152481 Score: 459
Period size: 101 Copynumber: 3.4 Consensus size: 100
68152131 AATTCATTTT
* * *
68152141 TTACATTCGTAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGT
1 TTACGTTCATAGTGCCATAACCCAGTTATGGTCTTATCATTAGAATGCCATAGCCCAGCTATGGT
*
68152206 CTTACATATAAACACTGCCATGGTTGGACCATGGTC
66 CTTACATATAAACACTGCCATGGTT-AACCATGGTC
* * * * * *
68152242 TTATGTTCATAGTTCCATAACCCAGTTATGGTCTTGTCATTAGAGTGCCATAGCCTAGCTGTGGT
1 TTACGTTCATAGTGCCATAACCCAGTTATGGTCTTATCATTAGAATGCCATAGCCCAGCTATGGT
* * *
68152307 CTTACATATAAACATTACCATGGTCCAACCATGGT-
66 CTTACATATAAACACTGCCATGGT-TAACCATGGTC
* * * *
68152342 TCTACGTTCATAGTGCAATAACCCAGTTATGGTCTTTTCATTAAAATGCCACAGCCCAGCTATGG
1 T-TACGTTCATAGTGCCATAACCCAGTTATGGTCTTATCATTAGAATGCCATAGCCCAGCTATGG
*
68152407 TATTACATATAAACACTGCCATGGTCTAACCATGGTC
65 TCTTACATATAAACACTGCCATGGT-TAACCATGGTC
* *
68152444 TTACATTCATAGTGCCATAACCCATTTATGGTCTTATC
1 TTACGTTCATAGTGCCATAACCCAGTTATGGTCTTATC
68152482 CATCAACTTA
Statistics
Matches: 207, Mismatches: 30, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
100 1 0.00
101 205 0.99
102 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (100 bp):
TTACGTTCATAGTGCCATAACCCAGTTATGGTCTTATCATTAGAATGCCATAGCCCAGCTATGGT
CTTACATATAAACACTGCCATGGTTAACCATGGTC
Found at i:68153572 original size:14 final size:13
Alignment explanation
Indices: 68153552--68153583 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
68153542 AATATTTGAC
68153552 TTGTTCTTAATTA
1 TTGTTCTTAATTA
68153565 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
68153579 TTGTT
1 TTGTT
68153584 TTGATATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:68157463 original size:13 final size:13
Alignment explanation
Indices: 68157445--68157482 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
68157435 AACAAAGATA
68157445 GACACGGCCGTGC
1 GACACGGCCGTGC
68157458 GACACGGCCGTGC
1 GACACGGCCGTGC
*
68157471 GACACGACCGTG
1 GACACGGCCGTG
68157483 TGCACCCACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.18, C:0.37, G:0.37, T:0.08
Consensus pattern (13 bp):
GACACGGCCGTGC
Found at i:68162321 original size:17 final size:18
Alignment explanation
Indices: 68162281--68162348 Score: 79
Period size: 18 Copynumber: 3.8 Consensus size: 18
68162271 GCAAACACAT
68162281 AAACCGAGAAC-ACACGAC
1 AAACCGA-AACTACACGAC
* *
68162299 AAACCGAAACTACA-TAT
1 AAACCGAAACTACACGAC
68162316 AAACCGAGAAC-ACACGAC
1 AAACCGA-AACTACACGAC
68162334 AAACCGAAACTACAC
1 AAACCGAAACTACAC
68162349 CAGAACGAGG
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
17 17 0.40
18 25 0.60
ACGTcount: A:0.51, C:0.31, G:0.12, T:0.06
Consensus pattern (18 bp):
AAACCGAAACTACACGAC
Found at i:68162321 original size:35 final size:35
Alignment explanation
Indices: 68162279--68162347 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
68162269 TGGCAAACAC
68162279 ATAAACCGAGAACACACGACAAACCGAAACTACAT
1 ATAAACCGAGAACACACGACAAACCGAAACTACAT
68162314 ATAAACCGAGAACACACGACAAACCGAAACTACA
1 ATAAACCGAGAACACACGACAAACCGAAACTACA
68162348 CCAGAACGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.52, C:0.29, G:0.12, T:0.07
Consensus pattern (35 bp):
ATAAACCGAGAACACACGACAAACCGAAACTACAT
Found at i:68168665 original size:2 final size:2
Alignment explanation
Indices: 68168658--68168692 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
68168648 CATTTTAACT
68168658 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
68168693 CACAAATCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:68178901 original size:40 final size:39
Alignment explanation
Indices: 68178856--68179062 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 39
68178846 CGGAATACAA
*
68178856 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACA-GCACAAATGCCTTCGGGTCTTAGC
* * * *
68178896 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAG-
1 CCGGATATAACCAC-AGCACAAATGCCTTCGGGTCTTAGC
* * * *
68178935 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-AGCACAAATGCCTTCGGGTCTTAGC
* ** *
68178975 CCGGATGTAGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCAC-AGCACAAAT-GCCTTCGGGTCTTAGC
** * * *
68179015 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCAC-AGCACAAATGCCTTCGGGTCTTAGC
68179055 CCGGATAT
1 CCGGATAT
68179063 CATTCAATTG
Statistics
Matches: 140, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 37 0.26
40 100 0.71
41 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACAGCACAAATGCCTTCGGGTCTTAGC
Found at i:68178995 original size:79 final size:81
Alignment explanation
Indices: 68178856--68179060 Score: 224
Period size: 79 Copynumber: 2.6 Consensus size: 81
68178846 CGGAATACAA
* *
68178856 CCGGATATAACCAC-ACGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAA
1 CCGGATATAACAACTA-GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCAC-AA
*
68178919 T-GCCTTCGGGTATT-AG
64 TGGCCTTCGGGTATTAAC
* * *
68178935 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAT
*
68178998 GGCCTTCGGGTCTTAAC
65 GGCCTTCGGGTATTAAC
** ** * *
68179015 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGCCCGGAT
68179061 ATCATTCAAT
Statistics
Matches: 106, Mismatches: 15, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.57
80 40 0.38
81 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAATG
GCCTTCGGGTATTAAC
Found at i:68186916 original size:40 final size:40
Alignment explanation
Indices: 68186871--68187039 Score: 214
Period size: 40 Copynumber: 4.2 Consensus size: 40
68186861 CGGAATACAA
*
68186871 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
68186911 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
68186951 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
68186991 CCGGATGTAGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAAT-GCCTTCGGGTCTTAGC
68187031 CCGGATATA
1 CCGGATATA
68187040 CCCGGATATT
Statistics
Matches: 111, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 3 0.03
40 108 0.97
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:68196327 original size:40 final size:40
Alignment explanation
Indices: 68196199--68196329 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
68196189 TATGCTGGAA
* * * *
68196199 ATTATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
68196239 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
68196279 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
68196319 ATTATATCCGG
1 ATTATATCCGG
68196330 TTATATTCCG
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:68198622 original size:13 final size:13
Alignment explanation
Indices: 68198604--68198628 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68198594 GGTTTGTTTA
68198604 TTAAACTAATTAT
1 TTAAACTAATTAT
68198617 TTAAACTAATTA
1 TTAAACTAATTA
68198629 ACTAATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:68202623 original size:23 final size:23
Alignment explanation
Indices: 68202565--68202612 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
68202555 TATCAAGATA
68202565 AATACTAGATTAAATTTAATATT
1 AATACTAGATTAAATTTAATATT
68202588 AATACTAGATTAAATTTAATATT
1 AATACTAGATTAAATTTAATATT
68202611 AA
1 AA
68202613 GTCTTATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (23 bp):
AATACTAGATTAAATTTAATATT
Found at i:68202755 original size:17 final size:17
Alignment explanation
Indices: 68202717--68202755 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
68202707 CTATTAAAAT
*
68202717 AAATATTAAATTTAATA
1 AAATATTAAATCTAATA
* *
68202734 TAATATTAAATCTATTA
1 AAATATTAAATCTAATA
68202751 AAATA
1 AAATA
68202756 ATATTATTTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
AAATATTAAATCTAATA
Found at i:68206089 original size:29 final size:29
Alignment explanation
Indices: 68205995--68206154 Score: 198
Period size: 29 Copynumber: 5.5 Consensus size: 29
68205985 GACAAGATTG
* * * * *
68205995 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
* * *
68206025 GCACTAAGTGTGCGAGTTTG--ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATATATA
68206053 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
68206082 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
68206112 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
*
68206141 GCACTAAGTCTGCG
1 GCACTAAGTGTGCG
68206155 GATTCACTAT
Statistics
Matches: 118, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
27 2 0.02
28 21 0.18
29 49 0.42
30 44 0.37
31 2 0.02
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:68206123 original size:59 final size:57
Alignment explanation
Indices: 68205995--68206154 Score: 205
Period size: 59 Copynumber: 2.8 Consensus size: 57
68205985 GACAAGATTG
* * * * * *
68205995 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
68206053 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
*
68206112 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTCTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
68206155 GATTCACTAT
Statistics
Matches: 91, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 49 0.54
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:68214070 original size:30 final size:30
Alignment explanation
Indices: 68214034--68214193 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
68214024 GACAAGATTG
* * * * *
68214034 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
68214064 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
68214092 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
68214121 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
68214151 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
68214180 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
68214194 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 48 0.40
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:68214162 original size:59 final size:57
Alignment explanation
Indices: 68214034--68214193 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
68214024 GACAAGATTG
* * * * * *
68214034 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
68214092 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
68214151 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
68214194 GATTCACTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 50 0.54
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:68219379 original size:36 final size:31
Alignment explanation
Indices: 68219316--68219378 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
68219306 AACATATTTC
*
68219316 ATATCTTCATTACAAGTACTTTACTTACCTT
1 ATATCTTAATTACAAGTACTTTACTTACCTT
68219347 ATATCTTAATTACAAGTACTTTACTTACCTT
1 ATATCTTAATTACAAGTACTTTACTTACCTT
68219378 A
1 A
68219379 CTTTCATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.21, G:0.03, T:0.44
Consensus pattern (31 bp):
ATATCTTAATTACAAGTACTTTACTTACCTT
Found at i:68220807 original size:13 final size:13
Alignment explanation
Indices: 68220789--68220813 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68220779 ACAAACAATA
68220789 AAATTTTCACACG
1 AAATTTTCACACG
68220802 AAATTTTCACAC
1 AAATTTTCACAC
68220814 ATATCAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:68224468 original size:46 final size:46
Alignment explanation
Indices: 68224415--68224583 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
68224405 TGTAACCCGC
68224415 CCATAAGTGAACTCGGACTCAACTCAACGAGCTAGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTAGGGCGTTCGCAT
* *
68224461 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTAGG--G-C--GTTCGCAT
* * * ** *
68224511 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCA-AACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCT-AGGGCGTTCGCAT
68224554 CCATAAGTGAACTCGGACTCAACTCAACGA
1 CCATAAGTGAACTCGGACTCAACTCAACGA
68224584 CTTCGGATGC
Statistics
Matches: 101, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 57 0.56
47 24 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTAGGGCGTTCGCAT
Found at i:68224535 original size:93 final size:93
Alignment explanation
Indices: 68224423--68224593 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
68224413 GCCCATAAGT
** *
68224423 GAACTCGGACTCAACTCAACGAGCT-AGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCA-AACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68224487 ACGAGC-TCGGATGCCTAGTTACATCTCAC
65 ACGA-CTTCGGATGCCTAGTTACATCTCAC
*
68224516 GAACTCGGACTCAACTCAACGAGTTCAAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68224581 CGACTTCGGATGC
66 CGACTTCGGATGC
68224594 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
92 1 0.01
93 70 0.97
94 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGACTTCGGATGCCTAGTTACATCTCAC
Found at i:68227897 original size:38 final size:39
Alignment explanation
Indices: 68227796--68227976 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 39
68227786 TTGAATGATG
* * * *
68227796 TCCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTG--CAGTTACTAAA
* * *
68227836 TCCGGACTAAGAT-CCGAAGGCATTCGTGCAGCTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAGTTACTAAA
* *
68227875 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAGTTACGAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAGTTACTAAA
* *
68227913 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AGTTACTA-AA
**
68227954 -CCGGGCTTTGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
68227977 TGAGCGAGTC
Statistics
Matches: 116, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 31 0.27
39 32 0.28
40 45 0.39
41 8 0.07
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAGTTACTAAA
Found at i:68235885 original size:40 final size:39
Alignment explanation
Indices: 68235841--68235955 Score: 140
Period size: 39 Copynumber: 2.9 Consensus size: 39
68235831 AAGTGACTAT
* * *
68235841 ATCCGGACTAAGATCCGAAGGCGTTCGTGCGAGTTAATAA
1 ATCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAAGAA
* * *
68235881 ATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACGAA
1 ATCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAAGAA
* *
68235920 ACCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA
1 ATCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTA
68235956 CTATAACCGG
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
39 32 0.50
40 32 0.50
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.22
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAAGAA
Found at i:68235956 original size:40 final size:39
Alignment explanation
Indices: 68235855--68235993 Score: 156
Period size: 40 Copynumber: 3.5 Consensus size: 39
68235845 GGACTAAGAT
* * *
68235855 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
* *
68235894 CCGAAGGCATTTGTGCGAGTTACGAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
*
68235934 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGCTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCGGG-TTAAGTC
* *
68235974 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
68235994 CGTTATATCC
Statistics
Matches: 86, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 32 0.37
40 50 0.58
41 4 0.05
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:68236008 original size:79 final size:78
Alignment explanation
Indices: 68235802--68236018 Score: 185
Period size: 79 Copynumber: 2.7 Consensus size: 78
68235792 TTGAATGATG
* ** * * *
68235802 TCCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGAC-TATATCCGGACTAAGATCCGAAGGCGT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAG-CGAGTTACGTATATCCGG-TTAAG-TCCGAAGGCAT
68235865 TCGTGCGAGTTAATAAA
62 TCGTGCGAGTTAATAAA
* * *
68235882 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACG-AAACCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTTACGTATATCC-GGTTAAGT-CCGAAGGCATTC
*
68235946 GTGCGAGTTACTATAA
64 GTGCGAGTTAATA-AA
** *
68235962 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAG-T-CGTTATATCCGGTTAAATTCCGAAG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCGAGTTACG-TATATCCGGTT-AAGTCCGAAG
68236019 ATACGTGATT
Statistics
Matches: 114, Mismatches: 14, Indels: 19
0.78 0.10 0.13
Matches are distributed among these distances:
78 3 0.03
79 64 0.56
80 47 0.41
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTTACGTATATCCGGTTAAGTCCGAAGGCATTCGT
GCGAGTTAATAAA
Found at i:68238994 original size:27 final size:26
Alignment explanation
Indices: 68238964--68239061 Score: 115
Period size: 27 Copynumber: 3.7 Consensus size: 26
68238954 TAGTTTACCG
68238964 AATTACCAAAATACCTCTGGTTTGTAA
1 AATTACCAAAATACC-CTGGTTTGTAA
* *
68238991 AATTACTAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCC-TGGTTTGTAA
* **
68239018 AATCACCAAAATACCCCTGGTTTGTTG
1 AATTACCAAAATA-CCCTGGTTTGTAA
*
68239045 AATTATCAAAATACCCT
1 AATTACCAAAATACCCT
68239062 TGTAGGGTAG
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
26 5 0.08
27 52 0.87
28 3 0.05
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (26 bp):
AATTACCAAAATACCCTGGTTTGTAA
Found at i:68239347 original size:27 final size:27
Alignment explanation
Indices: 68239053--68239346 Score: 439
Period size: 27 Copynumber: 10.9 Consensus size: 27
68239043 TGAATTATCA
*
68239053 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
68239080 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
68239107 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
68239134 AAATACCCCTATA-GGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
68239160 AAATACCCCTGTAGGGTTGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
68239187 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
68239214 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
68239241 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
68239268 AAATACCCTTGTAGGGTAGAAATA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-G
* *
68239295 AAATACCCCTGTAGGGTAAAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * * *
68239322 AGATACCCTTGTGGGGTAAAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
68239347 CATTTTGCCC
Statistics
Matches: 244, Mismatches: 20, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
26 25 0.10
27 219 0.90
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTG
Found at i:68239869 original size:6 final size:6
Alignment explanation
Indices: 68239860--68240048 Score: 168
Period size: 6 Copynumber: 30.8 Consensus size: 6
68239850 TTGCATTCAC
*
68239860 ATTCTG ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
* * * * *
68239909 -TTACCTA ATTCTG ATTTTG GTTCTG ATTCTG ATTCTG ATTTTG GTTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
68239958 ATTCTG ATTCAG TTATCTA ATTCTG ATTCTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG AT-TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
68240007 -TCACCTG ATTCTG ATTCTA ATTCTG ATTCTC ATTTTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
68240049 AGTTATGATA
Statistics
Matches: 145, Mismatches: 28, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
5 5 0.03
6 125 0.86
7 11 0.08
8 4 0.03
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:68239891 original size:25 final size:24
Alignment explanation
Indices: 68239860--68240048 Score: 168
Period size: 25 Copynumber: 7.7 Consensus size: 24
68239850 TTGCATTCAC
68239860 ATTCTGATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTGATTCTG
*
68239884 -TTACCTGATACTGATTCTGATTCTG
1 ATT--CTGATTCTGATTCTGATTCTG
* * *
68239909 -TTACCTAATTCTGATTTTGGTTCTG
1 ATT--CTGATTCTGATTCTGATTCTG
* *
68239934 ATTCTGATTCTGATTTTGGTTCTG
1 ATTCTGATTCTGATTCTGATTCTG
* * *
68239958 ATTCTGATTCAGTTATCTAATTCTG
1 ATTCTGATTCTGAT-TCTGATTCTG
*
68239983 ATTCTGATTCTGATTTTGATTCTG
1 ATTCTGATTCTGATTCTGATTCTG
* *
68240007 -TCACCTGATTCTGATTCTAATTCTG
1 AT--TCTGATTCTGATTCTGATTCTG
* *
68240032 ATTCTCATTTTGATTCT
1 ATTCTGATTCTGATTCT
68240049 AGTTATGATA
Statistics
Matches: 137, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
23 3 0.02
24 52 0.38
25 79 0.58
26 3 0.02
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (24 bp):
ATTCTGATTCTGATTCTGATTCTG
Found at i:68239901 original size:31 final size:31
Alignment explanation
Indices: 68239860--68240036 Score: 154
Period size: 31 Copynumber: 5.7 Consensus size: 31
68239850 TTGCATTCAC
68239860 ATTCTGATTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGATTCTGTTACCTG
*
68239891 A---T-A--CTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGATTCTGTTACCTG
* *
68239916 ATTCTGATTTTGGTTCTGATTCTGATT--CTG
1 ATTCTGATTCTGATTCTGATTCTG-TTACCTG
* * *
68239946 ATTTTGGTTCTGATTCTGATTCAGTTATCTAATTCTG
1 ATTCTGATTCTGATTCTGATTCTGTTA-C-----CTG
* *
68239983 ATTCTGATTCTGATTTTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGATTCTGTTACCTG
*
68240014 ATTCTGATTCTAATTCTGATTCT
1 ATTCTGATTCTGATTCTGATTCT
68240037 CATTTTGATT
Statistics
Matches: 115, Mismatches: 16, Indels: 30
0.71 0.10 0.19
Matches are distributed among these distances:
25 22 0.19
27 1 0.01
28 2 0.02
29 3 0.03
30 21 0.18
31 38 0.33
32 2 0.02
36 1 0.01
37 25 0.22
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGATTCTGTTACCTG
Found at i:68239981 original size:37 final size:37
Alignment explanation
Indices: 68239940--68240036 Score: 122
Period size: 37 Copynumber: 2.6 Consensus size: 37
68239930 TCTGATTCTG
* * * *
68239940 ATTCTGATTTTGGTTCTGATTCTGATTCAGTTATCTA
1 ATTCTGATTCTGATTCTGATTCTGATTCAGTCACCTA
* * *
68239977 ATTCTGATTCTGATTCTGATTTTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGATTCTGATTCAGTCACCTA
*
68240014 ATTCTGATTCTAATTCTGATTCT
1 ATTCTGATTCTGATTCTGATTCT
68240037 CATTTTGATT
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (37 bp):
ATTCTGATTCTGATTCTGATTCTGATTCAGTCACCTA
Found at i:68240036 original size:43 final size:43
Alignment explanation
Indices: 68239861--68240006 Score: 104
Period size: 43 Copynumber: 3.4 Consensus size: 43
68239851 TGCATTCACA
*
68239861 TTCTGATTCTGATTCTGATTCTG-TTACCTGAT-ACTGATTCTGA
1 TTCTGATTCTGATTCTGATTTTGATT--CTGATCACTGATTCTGA
* * *
68239904 TTCTG-TTACCTAATTCTGATTTTGGTTCTGAT-TCTGATTCTGA
1 TTCTGATT--CTGATTCTGATTTTGATTCTGATCACTGATTCTGA
* * ** * * *
68239947 TTTTGGTTCTGATTCTGATTCAGTTATCTAAT-TCTGATTCTGA
1 TTCTGATTCTGATTCTGATTTTGAT-TCTGATCACTGATTCTGA
*
68239990 TTCTGATTTTGATTCTG
1 TTCTGATTCTGATTCTG
68240007 TCACCTGATT
Statistics
Matches: 86, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
42 15 0.17
43 54 0.63
44 15 0.17
45 2 0.02
ACGTcount: A:0.17, C:0.16, G:0.16, T:0.51
Consensus pattern (43 bp):
TTCTGATTCTGATTCTGATTTTGATTCTGATCACTGATTCTGA
Found at i:68248374 original size:50 final size:50
Alignment explanation
Indices: 68248299--68248533 Score: 212
Period size: 50 Copynumber: 4.7 Consensus size: 50
68248289 TGAATACACG
* * *
68248299 TGTGTAGTACTAAGTGGATGCTACTACGTGTATCAT-ACTGTTAATTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATGACTGTTAA-TCACA
* * ** *
68248349 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TC-ATGACTGTTAATCACA
* * * * *
68248400 TGTGTAGTACTAAATGCAGGCTATTACGTGTATCA-GA-TGATGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATGACTG-TTA-ATCACA
* * *
68248450 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-C-TGGATTGTTGATCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAT-GACTGTTAATCACA
* *
68248499 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA
68248534 GATAGCTTCG
Statistics
Matches: 150, Mismatches: 24, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 36 0.24
50 69 0.46
51 35 0.23
52 4 0.03
53 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATGACTGTTAATCACA
Found at i:68248470 original size:101 final size:98
Alignment explanation
Indices: 68248295--68248536 Score: 270
Period size: 101 Copynumber: 2.4 Consensus size: 98
68248285 ATTGTGAATA
* * * * * *
68248295 CACGTGTGTAGTACTAAGTGGATGCTACTACGTGTATCATACTGTTAATTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGTGAAGTCACATGTGTAGTACT
*
68248360 AAGTGCAGGCTACTATGCGTACT-CAATGACTTCGAT
65 AAGTGCAGGCTACTACGCGTACTGCAATG--TT-GAT
* * * *
68248396 CACGTGTGTAGTACTAAATGCAGGCTATTACGTGTATCAGATGATGAGGTCACGTGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATG-TGAAGTCACATGTGTAGTACT
* * *
68248461 AAGTGCAGGCTACTACGTGTACTGGATTGTTGAT
65 AAGTGCAGGCTACTACGCGTACTGCAATGTTGAT
* * * *
68248495 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT
68248537 AGCTTCGGCT
Statistics
Matches: 119, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
99 39 0.33
100 4 0.03
101 73 0.61
102 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (98 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGTGAAGTCACATGTGTAGTACTA
AGTGCAGGCTACTACGCGTACTGCAATGTTGAT
Found at i:68248536 original size:99 final size:100
Alignment explanation
Indices: 68248349--68248536 Score: 254
Period size: 99 Copynumber: 1.9 Consensus size: 100
68248339 TTAATTCGCA
* *
68248349 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCACGTGTGTAGTACTAAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAATGA-TTCGATCACATGTGTAGTACTAAA
* *
68248414 TGCAGGCTATTACGTGTATCAGATGATGAGGTCACG
65 TGCAGGCTACTACGCGTATCAGATGATGAGGTCACG
* * * * *
68248450 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATTG-TT-GATCGCATGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACT-CAATGATTCGATCACATGTGTAGTACTAAA
*
68248513 TGCAGGCTACTATGCGTATCAGAT
65 TGCAGGCTACTACGCGTATCAGAT
68248537 AGCTTCGGCT
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
99 39 0.51
100 2 0.03
101 32 0.42
102 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCAATGATTCGATCACATGTGTAGTACTAAAT
GCAGGCTACTACGCGTATCAGATGATGAGGTCACG
Found at i:68258679 original size:48 final size:46
Alignment explanation
Indices: 68258507--68258681 Score: 174
Period size: 51 Copynumber: 3.6 Consensus size: 46
68258497 TGAATACACG
* *
68258507 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTGTAT-AGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGT-TA-C-TAATGT-TGA-TCGCA
* *
68258557 TGTGTAGTACTAAGTGCAGGCTACTATGCG-TACTCAATGACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTA--CGTTACT-AATG--TT-GATCGCA
*
68258608 TGTGTAGTACTAAGTGCAGGCTACTACGTTACTGGATTGTTGATCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTTACT--AATGTTGATCGCA
68258656 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
68258682 TGCGTATCAG
Statistics
Matches: 108, Mismatches: 8, Indels: 20
0.79 0.06 0.15
Matches are distributed among these distances:
48 32 0.30
49 8 0.07
50 32 0.30
51 33 0.31
52 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (46 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTTACTAATGTTGATCGCA
Found at i:68258700 original size:99 final size:101
Alignment explanation
Indices: 68258503--68258687 Score: 290
Period size: 99 Copynumber: 1.9 Consensus size: 101
68258493 ATTGTGAATA
*
68258503 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTGTATAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATACTGTATAGTCGCATGTGTAGTACT
68258568 AAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
66 AAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
*
68258604 CACGTGTGTAGTACTAAGTGCAGGCTACTACGT-TA-C-TGGATTGT-T-GATCGCATGTGTAGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAT--ACTGTATAG-TCGCATGTGTAGT
68258664 ACTAAGTGCAGGCTACTATGCGTA
63 ACTAAGTGCAGGCTACTATGCGTA
68258688 TCAGATAGCT
Statistics
Matches: 79, Mismatches: 2, Indels: 8
0.89 0.02 0.09
Matches are distributed among these distances:
98 2 0.03
99 39 0.49
100 6 0.08
101 32 0.41
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (101 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATACTGTATAGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
Done.