Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 223 of 410
Found at i:68474006 original size:15 final size:15
Alignment explanation
Indices: 68473986--68474024 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
68473976 TCAAGCTCAT
68473986 AAATTTAAAAGCATA
1 AAATTTAAAAGCATA
68474001 AAATTTAAAAGCATA
1 AAATTTAAAAGCATA
68474016 AAATTTAAA
1 AAATTTAAA
68474025 TGACTTTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (15 bp):
AAATTTAAAAGCATA
Found at i:68476506 original size:27 final size:27
Alignment explanation
Indices: 68476487--68476616 Score: 161
Period size: 27 Copynumber: 4.8 Consensus size: 27
68476477 ATTACCAAAG
68476487 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
68476514 TACCTTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
68476541 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
** * * **
68476568 TACCCTTAATTTACAAAATTATTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
68476595 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
68476617 TAAAATACCC
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:68476617 original size:54 final size:54
Alignment explanation
Indices: 68476487--68476617 Score: 183
Period size: 54 Copynumber: 2.4 Consensus size: 54
68476477 ATTACCAAAG
* * *
68476487 TACCCTCGATTTATAGAATTACCGTTTTACCTTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTTTACCTTCAATTTACAAAATTACCGTTT
**
68476541 TACCCTCGATTTATAGAATTACTGTTTTACCCTT-AATTTACAAAATTATTGTTT
1 TACCCTCGATTTATAGAATTACTGTTTTA-CCTTCAATTTACAAAATTACCGTTT
* *
68476595 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTATAGAATTACT
68476618 AAAATACCCT
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 65 0.94
55 4 0.06
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACTGTTTTACCTTCAATTTACAAAATTACCGTTT
Found at i:68476625 original size:27 final size:27
Alignment explanation
Indices: 68476595--68476868 Score: 193
Period size: 27 Copynumber: 10.2 Consensus size: 27
68476585 ATTATTGTTT
* *
68476595 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
68476622 TACCCTC-AGTTTATAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
*
68476649 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAA
* * * *
68476676 TACCCTAG-TTTGTAAAATTGCTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * * *
68476702 TACCCTTGGTTTGT-AAATTACCGAAA
1 TACCCTCGATTTATAAAATTACCAAAA
** * * *
68476728 TACCCTTAATTTGTAAAATTATCAGAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
68476755 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* ** *
68476782 TACCACT-GGTTTACGAAATTACCGAAA
1 TACC-CTCGATTTATAAAATTACCAAAA
** *
68476809 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * **
68476836 TACCC-CTGATTTACAAAGTTACGGAAA
1 TACCCTC-GATTTATAAAATTACCAAAA
68476863 TACCCT
1 TACCCT
68476869 TGACTTTCTA
Statistics
Matches: 197, Mismatches: 39, Indels: 21
0.77 0.15 0.08
Matches are distributed among these distances:
26 46 0.23
27 148 0.75
28 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:68476626 original size:54 final size:54
Alignment explanation
Indices: 68476522--68476644 Score: 138
Period size: 54 Copynumber: 2.3 Consensus size: 54
68476512 TTTACCTTCG
* * * **** *
68476522 ATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTA
1 ATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCA
**
68476576 ATTTACAAAATTATTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCA
1 ATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCA
* *
68476630 GTTTATAAAATTACC
1 ATTTACAAAATTACC
68476645 AAAATACCCT
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.40
Consensus pattern (54 bp):
ATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCA
Found at i:68476718 original size:53 final size:53
Alignment explanation
Indices: 68476609--68476840 Score: 250
Period size: 54 Copynumber: 4.3 Consensus size: 53
68476599 CTCGATTTAC
* ** **
68476609 AAAATTACTAAAATACCCTCAGTTTATAAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCT-AGTTTATAAAATTACCAAAATACCCTTAATTTGT
* * * **
68476663 AAAATTACCAAAATACCCTAGTTTGTAAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTAGTTTATAAAATTACCAAAATACCCTTAATTTGT
* * * * * *
68476716 -AAATTACCGAAATACCCTTAATTTGTAAAATTATCAGAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCC-TAGTTTATAAAATTACCAAAATACCCTTAATTTGT
* ** *
68476769 AAAATTACCAAAATACCACTGGTTTACGAAATTACCGAAATACCCTTAATTTGT
1 AAAATTACCAAAATACC-CTAGTTTATAAAATTACCAAAATACCCTTAATTTGT
68476823 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
68476841 CTGATTTACA
Statistics
Matches: 150, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
52 16 0.11
53 57 0.38
54 76 0.51
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTAGTTTATAAAATTACCAAAATACCCTTAATTTGT
Found at i:68477015 original size:27 final size:27
Alignment explanation
Indices: 68476985--68477072 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 27
68476975 ACCCCTATTA
68476985 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAAAGACCGTAAAGCCCCTGTAG
* * *
68477012 GGTAAAGAGACCGTAAAGGCCCTATAG
1 GGTAAAAAGACCGTAAAGCCCCTGTAG
** *
68477039 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAAAGACCGTAA-AGCCCCTGTAG
68477066 GGTAAAA
1 GGTAAAA
68477073 TGATGAATGT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.18
Consensus pattern (27 bp):
GGTAAAAAGACCGTAAAGCCCCTGTAG
Found at i:68477971 original size:25 final size:26
Alignment explanation
Indices: 68477874--68477996 Score: 205
Period size: 26 Copynumber: 4.8 Consensus size: 26
68477864 GAGAAAGTGC
*
68477874 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
68477900 AAAAGGGCTTATGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
68477926 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
68477952 AAAAGGGCTT-TGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
68477977 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
68477997 ATTAAAAGAG
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
25 35 0.38
26 57 0.62
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:68478292 original size:31 final size:31
Alignment explanation
Indices: 68478215--68478327 Score: 144
Period size: 31 Copynumber: 3.7 Consensus size: 31
68478205 CGTTTACAGT
*
68478215 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
68478246 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* ** *
68478277 AAAGGCTTCAGCCCAGT-A-ACCATTAAATG-
1 AAAGGCTTCGGCCCAGTGATATGATT-TATGA
68478306 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
68478328 TCAAGACTAA
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
29 21 0.29
30 5 0.07
31 46 0.64
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:68479473 original size:27 final size:27
Alignment explanation
Indices: 68479443--68479580 Score: 73
Period size: 27 Copynumber: 5.1 Consensus size: 27
68479433 AACAGTCATC
* *
68479443 TTACCATAAAAGAACAAAATAGTAATT
1 TTACCATAAAAGAACAAAACAATAATT
* * **
68479470 TTACCTTATAAGGGCAAAACAATAATT
1 TTACCATAAAAGAACAAAACAATAATT
* * * *
68479497 TTACCACATAAAGGA-AAAACATTCATT
1 TTACCATA-AAAGAACAAAACAATAATT
* * ** *
68479524 TCACC-TCATAAGGGCAAAACAATCATT
1 TTACCAT-AAAAGAACAAAACAATAATT
* ** *
68479551 TTACCACAAAAGGGCAAAACAATTATT
1 TTACCATAAAAGAACAAAACAATAATT
68479578 TTA
1 TTA
68479581 TCGATTAAGG
Statistics
Matches: 86, Mismatches: 21, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
26 4 0.05
27 78 0.91
28 4 0.05
ACGTcount: A:0.47, C:0.17, G:0.09, T:0.26
Consensus pattern (27 bp):
TTACCATAAAAGAACAAAACAATAATT
Found at i:68479570 original size:54 final size:54
Alignment explanation
Indices: 68479422--68479571 Score: 158
Period size: 54 Copynumber: 2.8 Consensus size: 54
68479412 ACATACATCA
* * * * * ** * *
68479422 CATAGGGGTAAAACAGTCATCTTACCATAAAAGAACAAAATAGTAATTTTACCT
1 CATAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACAGTAATTTCACCT
* * * * *
68479476 TATAAGGGCAAAACAATAATTTTACCACATAAA-GGAAAAACATTCATTTCACCT
1 CATAAGGGCAAAACAATCATTTTACCACA-AAAGGGCAAAACAGTAATTTCACCT
68479530 CATAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACA
1 CATAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACA
68479572 ATTATTTTAT
Statistics
Matches: 77, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
53 3 0.04
54 71 0.92
55 3 0.04
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.23
Consensus pattern (54 bp):
CATAAGGGCAAAACAATCATTTTACCACAAAAGGGCAAAACAGTAATTTCACCT
Found at i:68479591 original size:27 final size:27
Alignment explanation
Indices: 68479467--68479580 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 27
68479457 CAAAATAGTA
** *
68479467 ATTTTACCTTATAAGGGCAAAACAATA
1 ATTTTACCACATAAGGGCAAAACAATC
* * *
68479494 ATTTTACCACATAAAGGAAAAACATTC
1 ATTTTACCACATAAGGGCAAAACAATC
* *
68479521 ATTTCACCTCATAAGGGCAAAACAATC
1 ATTTTACCACATAAGGGCAAAACAATC
* *
68479548 ATTTTACCACAAAAGGGCAAAACAATT
1 ATTTTACCACATAAGGGCAAAACAATC
68479575 ATTTTA
1 ATTTTA
68479581 TCGATTAAGG
Statistics
Matches: 72, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.45, C:0.18, G:0.10, T:0.27
Consensus pattern (27 bp):
ATTTTACCACATAAGGGCAAAACAATC
Found at i:68480596 original size:12 final size:12
Alignment explanation
Indices: 68480564--68480602 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
68480554 CCTCCCCTAT
*
68480564 TCTCTCCTAAAA
1 TCTCTCCTCAAA
*
68480576 TCCCTCCTCAAA
1 TCTCTCCTCAAA
*
68480588 TCTCTCCTCCAA
1 TCTCTCCTCAAA
68480600 TCT
1 TCT
68480603 TTCAACTAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.23, C:0.44, G:0.00, T:0.33
Consensus pattern (12 bp):
TCTCTCCTCAAA
Found at i:68487624 original size:40 final size:39
Alignment explanation
Indices: 68487580--68487703 Score: 153
Period size: 40 Copynumber: 3.2 Consensus size: 39
68487570 GGGACTCAAC
*
68487580 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
68487620 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
68487660 CCGGATTTAGTACTTAGCAC-AAAGCCTTCGGA-CTTAGC
1 CCGGATTTAGTACTT-GCACGAAAGCCTTCGGATCTTAGT
68487698 CCGGAT
1 CCGGAT
68487704 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
38 11 0.15
39 12 0.17
40 48 0.67
41 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:68487636 original size:80 final size:78
Alignment explanation
Indices: 68487519--68487703 Score: 205
Period size: 80 Copynumber: 2.3 Consensus size: 78
68487509 GCTACACATT
* * *
68487519 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGA-CTCAACCC
1 CAAA-GCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTC-GGATCTCAACCC
*
68487582 GGATTTAGTAGCTT-GCT
62 GGATTTAGTA-CTTAGCA
* * * **
68487599 CGAAAGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGTCCGG
1 C-AAAGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGATCTCAACCCGG
68487664 ATTTAGTACTTAGCA
64 ATTTAGTACTTAGCA
68487679 CAAAGCCTTCGGACTTAGCCCGGAT
1 CAAAGCCTTCGGACTTAGCCCGGAT
68487704 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
78 11 0.12
79 21 0.23
80 53 0.59
81 5 0.06
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (78 bp):
CAAAGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGATCTCAACCCGGAT
TTAGTACTTAGCA
Found at i:68493839 original size:38 final size:39
Alignment explanation
Indices: 68493788--68494077 Score: 437
Period size: 38 Copynumber: 7.5 Consensus size: 39
68493778 TAATGGAGAA
*
68493788 ATATCCGGGCTAAGT-TCGAAGGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
* *
68493826 ATATCCGGGCTAAGTCCCGAAGGCATTCATGTTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
* *
68493865 ATATCCGAGCTAAG-CCCGAAGGCATTCGTACTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
68493903 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
68493942 ATATCCGGGCTAA-TCCCGAAGGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
68493980 ATATCCGGGCTAAG-CCCGAAGGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
* * *
68494018 ATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTATT
1 ATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTGTT
*
68494057 ATATTCGGGCTTAAAGTCCCG
1 ATATCCGGGC-T-AAGTCCCG
68494078 CATGCTTTGG
Statistics
Matches: 233, Mismatches: 13, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
38 122 0.52
39 93 0.40
40 18 0.08
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
Found at i:68493877 original size:77 final size:78
Alignment explanation
Indices: 68493788--68494077 Score: 437
Period size: 77 Copynumber: 3.7 Consensus size: 78
68493778 TAATGGAGAA
*
68493788 ATATCCGGGCTAAGT-TCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCAT
* *
68493852 TCATGTTGGTGTT
66 TCGTGCTGGTGTT
* *
68493865 ATATCCGAGCTAAG-CCCGAAGGCATTCGTACTGGTGTTATATCCGGGCTAAGTCCCGAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCAT
68493929 TCGTGCTGGTGTT
66 TCGTGCTGGTGTT
68493942 ATATCCGGGCTAA-TCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAG-CCCGAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCAT
68494005 TCGTGCTGGTGTT
66 TCGTGCTGGTGTT
* * * *
68494018 ATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTATTATATTCGGGCTTAAAGTCCCG
1 ATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC-T-AAGTCCCG
68494078 CATGCTTTGG
Statistics
Matches: 195, Mismatches: 11, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
76 35 0.18
77 143 0.73
78 10 0.05
79 3 0.02
80 4 0.02
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (78 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCAT
TCGTGCTGGTGTT
Found at i:68493977 original size:115 final size:116
Alignment explanation
Indices: 68493788--68494077 Score: 451
Period size: 115 Copynumber: 2.5 Consensus size: 116
68493778 TAATGGAGAA
*
68493788 ATATCCGGGCTAAGT-TCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCAT
*
68493852 TCATGTTGGTGTTATATCCGAGCTAAGCCCGAAGGCATTCGTACTGGTGTT
66 TCATGCTGGTGTTATATCCGAGCTAAGCCCGAAGGCATTCGTACTGGTGTT
68493903 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAA-TCCCGAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCAT
* * *
68493967 TCGTGCTGGTGTTATATCCGGGCTAAGCCCGAAGGCATTCGTGCTGGTGTT
66 TCATGCTGGTGTTATATCCGAGCTAAGCCCGAAGGCATTCGTACTGGTGTT
* * * *
68494018 ATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTATTATATTCGGGCTTAAAGTCCCG
1 ATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC-T-AAGTCCCG
68494078 CATGCTTTGG
Statistics
Matches: 161, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
115 106 0.66
116 48 0.30
117 2 0.01
118 5 0.03
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (116 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCAT
TCATGCTGGTGTTATATCCGAGCTAAGCCCGAAGGCATTCGTACTGGTGTT
Found at i:68498898 original size:2 final size:2
Alignment explanation
Indices: 68498893--68498917 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
68498883 GATTTAGGTT
68498893 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
68498918 GTGTGTGTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:68500014 original size:38 final size:38
Alignment explanation
Indices: 68499945--68500196 Score: 364
Period size: 38 Copynumber: 6.5 Consensus size: 38
68499935 TAATGGAGAA
68499945 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGT-CCGAAGGCATTCGTGCTGGTG
68499984 TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG
* *
68500022 TTATATCTGGGCTAAGCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG
68500060 TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG
* *
68500098 TTATATCCGGGCTAAGCCCCGAAGGCATTCATGC-GGTG
1 TTATATCCGGGCTAAG-TCCGAAGGCATTCGTGCTGGTG
* * *
68500136 TTATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGT-CCGAAGGCATTCGTGCTGGTG
*
68500175 TTATATTCGGGCTTAAAGTCCG
1 TTATATCCGGGC-T-AAGTCCG
68500197 CATGCTTTGT
Statistics
Matches: 196, Mismatches: 12, Indels: 10
0.90 0.06 0.05
Matches are distributed among these distances:
38 131 0.67
39 59 0.30
40 6 0.03
ACGTcount: A:0.19, C:0.22, G:0.30, T:0.29
Consensus pattern (38 bp):
TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG
Found at i:68506069 original size:14 final size:16
Alignment explanation
Indices: 68506040--68506071 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
68506030 GGATTATGTA
68506040 GAAAAAATAAAGAAAT
1 GAAAAAATAAAGAAAT
68506056 GAAAAAA-AAA-AAAT
1 GAAAAAATAAAGAAAT
68506070 GA
1 GA
68506072 GCATGGATGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 3 0.19
16 7 0.44
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.09
Consensus pattern (16 bp):
GAAAAAATAAAGAAAT
Found at i:68507252 original size:29 final size:29
Alignment explanation
Indices: 68507218--68507295 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
68507208 GTGACGAGAT
* *
68507218 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
68507247 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
68507276 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
68507296 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:68514951 original size:29 final size:29
Alignment explanation
Indices: 68514917--68514994 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
68514907 GTGACGAGAT
* *
68514917 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
68514946 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
68514975 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
68514995 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:68522517 original size:42 final size:39
Alignment explanation
Indices: 68522470--68522585 Score: 115
Period size: 39 Copynumber: 2.9 Consensus size: 39
68522460 GTAGGCATAA
* *
68522470 TGCCGGTGAATAAGTTTCAGACTTAATATCTAGCAGGCCTCG
1 TGCCGGTG-ATAA-ATTCAG-CTTAATACCTAGCAGGCCTCG
* * *
68522512 TGCCGGTGGTAAATTCAGGTTTATACCTAGCAGGCCTCG
1 TGCCGGTGATAAATTCAGCTTAATACCTAGCAGGCCTCG
* * * * *
68522551 TGCCGGTGTTAAGTTCGGGTTTATACCTAGCAGGC
1 TGCCGGTGATAAATTCAGCTTAATACCTAGCAGGC
68522586 AAATTGCCGG
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
39 50 0.76
40 5 0.08
41 3 0.05
42 8 0.12
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (39 bp):
TGCCGGTGATAAATTCAGCTTAATACCTAGCAGGCCTCG
Found at i:68522545 original size:39 final size:39
Alignment explanation
Indices: 68522499--68522585 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
68522489 GACTTAATAT
68522499 CTAGCAGGCCTCGTGCCGGTGGTAAATTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGGTAAATTCAGGTTTATAC
* * *
68522538 CTAGCAGGCCTCGTGCCGGTGTTAAGTTCGGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGGTAAATTCAGGTTTATAC
68522577 CTAGCAGGC
1 CTAGCAGGC
68522586 AAATTGCCGG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.18, C:0.24, G:0.30, T:0.28
Consensus pattern (39 bp):
CTAGCAGGCCTCGTGCCGGTGGTAAATTCAGGTTTATAC
Found at i:68522594 original size:39 final size:39
Alignment explanation
Indices: 68522511--68522597 Score: 111
Period size: 39 Copynumber: 2.2 Consensus size: 39
68522501 AGCAGGCCTC
***
68522511 GTGCCGGTGGTAAATTCAGGTTTATACCTAGCAGGCCTC
1 GTGCCGGTGGTAAATTCAGGTTTATACCTAGCAGGCAAA
* * *
68522550 GTGCCGGTGTTAAGTTCGGGTTTATACCTAGCAGGCAAA
1 GTGCCGGTGGTAAATTCAGGTTTATACCTAGCAGGCAAA
*
68522589 TTGCCGGTG
1 GTGCCGGTG
68522598 AAACAATAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.29
Consensus pattern (39 bp):
GTGCCGGTGGTAAATTCAGGTTTATACCTAGCAGGCAAA
Found at i:68529067 original size:14 final size:14
Alignment explanation
Indices: 68529048--68529074 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
68529038 GATTTTGAAT
68529048 AATGTAAGTAATGG
1 AATGTAAGTAATGG
68529062 AATGTAAGTAATG
1 AATGTAAGTAATG
68529075 TTTATGCAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.26, T:0.30
Consensus pattern (14 bp):
AATGTAAGTAATGG
Found at i:68535134 original size:40 final size:39
Alignment explanation
Indices: 68535051--68535242 Score: 136
Period size: 40 Copynumber: 4.8 Consensus size: 39
68535041 TCGAATGATG
* * * * *
68535051 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
68535091 TCCGGACTAGGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * * * *
68535131 TCCGGGCTAAGCCCAAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * * *
68535170 CCCGGGTTAAGTCCTGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCC-GAAGGCATTCGTGCGAGTTAATA-AA
** * *
68535211 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
68535243 CGTTATATCC
Statistics
Matches: 121, Mismatches: 26, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
39 34 0.28
40 76 0.63
41 11 0.09
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:68535215 original size:79 final size:81
Alignment explanation
Indices: 68535051--68535235 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
68535041 TCGAATGATG
* * *
68535051 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
68535115 CGTGCGAGTTAATAAA
66 CGTGCGAGTCAATAAA
* * **
68535131 TCCGGGCTAAG-CCCAAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCTGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCC-GAAGGCAT
*
68535193 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATA-AA
**
68535211 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68535236 AGCGAGTCGT
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 33 0.37
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATAAA
Found at i:68536965 original size:20 final size:19
Alignment explanation
Indices: 68536941--68536988 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
68536931 GTTTCGACCC
* *
68536941 AAATTAATTATTTTCATTA
1 AAATTAATTAATTACATTA
* *
68536960 ATAATTATTTAATTACTTTA
1 A-AATTAATTAATTACATTA
68536980 AAATTAATT
1 AAATTAATT
68536989 TTCCAAAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (19 bp):
AAATTAATTAATTACATTA
Found at i:68539571 original size:40 final size:40
Alignment explanation
Indices: 68539527--68539711 Score: 255
Period size: 40 Copynumber: 4.7 Consensus size: 40
68539517 GCCACTAGCT
* * * *
68539527 CAAATGCCTTCGGGACTTAGCCTGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
68539567 CAAATGCCTTCGGGACTTGGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* * *
68539606 CAAATTCCTTCGGGACTTAGCCCGGATATAATAGCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* * *
68539646 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
68539686 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68539712 ATTAGCCACT
Statistics
Matches: 130, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 35 0.27
40 95 0.73
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
Found at i:68539627 original size:79 final size:80
Alignment explanation
Indices: 68539527--68539711 Score: 255
Period size: 79 Copynumber: 2.3 Consensus size: 80
68539517 GCCACTAGCT
* * * * * *
68539527 CAAATGCCTTCGGGACTTAGCCTGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTGGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
68539592 -TATAATAACTCGCA
66 ATATAATAACTCGCA
* * *
68539606 CAAATTCCTTCGGGACTTAGCCCGGATATAATAGCTCGTACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
68539671 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
*
68539686 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68539712 ATTAGCCACT
Statistics
Matches: 92, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
79 56 0.61
80 36 0.39
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:68539732 original size:40 final size:39
Alignment explanation
Indices: 68539527--68539749 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 39
68539517 GCCACTAGCT
* * *
68539527 CAAATGCCTTCGGGACTTAGCCTGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAG-AACTCGCA
* *
68539567 CAAATGCCTTCGGGACTTGGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATAT-AGAACTCGCA
* *
68539606 CAAATTCCTTCGGGACTTAGCCCGGATATA-ATAGCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGA-A-CTCGCA
* *
68539646 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAG-AACTCGCA
* * * *
68539686 CGAATGCCTTCGGGACTTAGCCCGGA-ATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAG-AACTCGCA
68539726 CAAATG-CTCTCGGGACTTAGCCCG
1 CAAATGCCT-TCGGGACTTAGCCCG
68539750 ATTATCATCC
Statistics
Matches: 156, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
38 1 0.01
39 38 0.24
40 116 0.74
42 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGAACTCGCA
Found at i:68544327 original size:7 final size:7
Alignment explanation
Indices: 68544315--68544353 Score: 69
Period size: 7 Copynumber: 5.6 Consensus size: 7
68544305 CCATTCCTAA
68544315 TCATCCC
1 TCATCCC
*
68544322 TCATCCA
1 TCATCCC
68544329 TCATCCC
1 TCATCCC
68544336 TCATCCC
1 TCATCCC
68544343 TCATCCC
1 TCATCCC
68544350 TCAT
1 TCAT
68544354 ATTCTCTCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.18, C:0.51, G:0.00, T:0.31
Consensus pattern (7 bp):
TCATCCC
Found at i:68544498 original size:13 final size:13
Alignment explanation
Indices: 68544480--68544506 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
68544470 GAGAGCCATC
68544480 AGCGAAGGAGCGA
1 AGCGAAGGAGCGA
68544493 AGCGAAGGAGCGA
1 AGCGAAGGAGCGA
68544506 A
1 A
68544507 AGAGCCTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.44, T:0.00
Consensus pattern (13 bp):
AGCGAAGGAGCGA
Found at i:68550294 original size:25 final size:25
Alignment explanation
Indices: 68550260--68550364 Score: 105
Period size: 25 Copynumber: 4.4 Consensus size: 25
68550250 AATCAAAATG
* * * *
68550260 AGAATTAGAATCAGAACCAGGTGAC
1 AGAATCAGAATCAGTATCAGGTAAC
*
68550285 AGAATCAGAATTAGTATCAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAAC
*
68550310 AGAATCAGAATC---A--A-GTGAC
1 AGAATCAGAATCAGTATCAGGTAAC
68550329 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAAC
*
68550354 AGAACCAGAAT
1 AGAATCAGAAT
68550365 GTGAATGCAA
Statistics
Matches: 65, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
19 16 0.25
20 1 0.02
22 2 0.03
24 1 0.02
25 45 0.69
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.18
Consensus pattern (25 bp):
AGAATCAGAATCAGTATCAGGTAAC
Found at i:68550357 original size:19 final size:19
Alignment explanation
Indices: 68550290--68550342 Score: 70
Period size: 19 Copynumber: 2.8 Consensus size: 19
68550280 GTGACAGAAT
* *
68550290 CAGAATTAGTATCAGGTAA
1 CAGAATCAGAATCAGGTAA
* *
68550309 CAGAATCAGAATCAAGTGA
1 CAGAATCAGAATCAGGTAA
68550328 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
68550343 TATCAGGTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.19
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:68550364 original size:44 final size:44
Alignment explanation
Indices: 68550266--68550364 Score: 162
Period size: 44 Copynumber: 2.2 Consensus size: 44
68550256 AATGAGAATT
* * *
68550266 AGAATCAGAACCAGGTGACAGAATCAGAATTAGTATCAGGTAAC
1 AGAATCAGAATCAAGTGACAGAATCAGAATCAGTATCAGGTAAC
68550310 AGAATCAGAATCAAGTGACAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAAGTGACAGAATCAGAATCAGTATCAGGTAAC
*
68550354 AGAACCAGAAT
1 AGAATCAGAAT
68550365 GTGAATGCAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 51 1.00
ACGTcount: A:0.45, C:0.16, G:0.21, T:0.17
Consensus pattern (44 bp):
AGAATCAGAATCAAGTGACAGAATCAGAATCAGTATCAGGTAAC
Found at i:68550519 original size:27 final size:26
Alignment explanation
Indices: 68550482--68550561 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
68550472 AGTATGGCTT
*
68550482 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
68550508 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * *
68550535 CCAGAACAGATAATGTGGCAAAGCCA
1 CCAGAACAGATATTGTGACAGAGCCA
68550561 C
1 C
68550562 TTAACAGAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 25 0.51
27 24 0.49
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:68550748 original size:22 final size:22
Alignment explanation
Indices: 68550720--68550784 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
68550710 GCAAATACGT
*
68550720 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
*
68550742 TTGGCACAAAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
68550764 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
68550785 AAGGCTTTCA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:68551677 original size:27 final size:27
Alignment explanation
Indices: 68551240--68551670 Score: 601
Period size: 27 Copynumber: 16.0 Consensus size: 27
68551230 GGGTATCCTA
* *
68551240 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* * *
68551267 ATATTTCTACCCTACAAAGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* **
68551294 GTATTTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCG
* *
68551321 GTATTTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* *
68551348 GGATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* *
68551375 GTATTTCTACCCTACAAGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCG
68551402 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
*
68551429 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
*
68551456 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCG
* * *
68551483 ATAATTCTACTCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
*
68551510 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* *
68551537 ATATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
*
68551564 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* * *
68551591 ATAATTCTATCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* *
68551618 GTAATTCGACGCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
*
68551645 GTAATTCTACCCTACAGGGGTATTTC
1 GTAATTCTACCCTACAAGGGTATTTC
68551671 AATAATTTTG
Statistics
Matches: 361, Mismatches: 43, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 361 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCG
Found at i:68551692 original size:27 final size:27
Alignment explanation
Indices: 68551662--68551928 Score: 196
Period size: 27 Copynumber: 9.9 Consensus size: 27
68551652 TACCCTACAG
* ** *
68551662 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCAA
*** ** *
68551689 GGGTAAAACAGTAATTTTGTAAATTAA
1 GGGTATTTCAGTAATTTTACAAATCAA
* * *
68551716 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCAGTAATTTTACAAATCAA
68551743 GGGTATTTCAGTAATTTTACAAATCAA
1 GGGTATTTCAGTAATTTTACAAATCAA
68551770 GGGTATTTCAGTAATTTTACAAA-CTAA
1 GGGTATTTCAGTAATTTTACAAATC-AA
** * *
68551797 GGGTATTTTGGTAATTTCACAAATCAG
1 GGGTATTTCAGTAATTTTACAAATCAA
** * *
68551824 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTCAGTAATTTTACAAATCAA
** * *
68551851 GGGTATTTTGGTAATTTTACAAACCCA
1 GGGTATTTCAGTAATTTTACAAATCAA
* ** ** *
68551878 GTGGCATTTTGGTAATTTTGTAAACCAA
1 G-GGTATTTCAGTAATTTTACAAATCAA
**
68551906 GGGTATTTTGGTAATTTTACAAA
1 GGGTATTTCAGTAATTTTACAAA
68551929 CCAGAGGTAT
Statistics
Matches: 202, Mismatches: 33, Indels: 10
0.82 0.13 0.04
Matches are distributed among these distances:
26 4 0.02
27 174 0.86
28 24 0.12
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCAA
Found at i:68551718 original size:81 final size:80
Alignment explanation
Indices: 68551633--68551855 Score: 184
Period size: 81 Copynumber: 2.8 Consensus size: 80
68551623 TCGACGCTAC
* ** *
68551633 AAGGGTATTTCGGTAATTCTAC-CCTAC-AGGGGTATTTCAATAATTTTGTAAATCGAGGGTAAA
1 AAGGGTATTT-GGTAATTCTACAACT-CGA-GGGTATTTCAATAATTTTACAAATCAAGGGTAAA
** *
68551696 ACAGTAATTTTGTAAATT
63 ACAGTAATTTTACAAACT
* * * ***
68551714 AAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTC
1 AAGGGTA-TTTGGTAATTCTACAACTCGAGGGTATTTCAATAATTTTACAAATCAAGGGTAAAAC
68551779 AGTAATTTTACAAACT
65 AGTAATTTTACAAACT
* *** * *
68551795 AAGGGTATTTTGGTAATT-TCACAAATC-AGGGGTATTTTGGTAATTTTACAAACCAGGGGTA
1 AAGGGTA-TTTGGTAATTCT-ACAACTCGA-GGGTATTTCAATAATTTTACAAATCAAGGGTA
68551856 TTTTGGTAAT
Statistics
Matches: 118, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
80 2 0.02
81 111 0.94
82 5 0.04
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.36
Consensus pattern (80 bp):
AAGGGTATTTGGTAATTCTACAACTCGAGGGTATTTCAATAATTTTACAAATCAAGGGTAAAACA
GTAATTTTACAAACT
Found at i:68551929 original size:27 final size:27
Alignment explanation
Indices: 68551714--68551949 Score: 276
Period size: 27 Copynumber: 8.7 Consensus size: 27
68551704 TTTGTAAATT
* **
68551714 AAGGGTACTTTGGTAATTTTACAAGTC
1 AAGGGTATTTTGGTAATTTTACAAACC
* ** *
68551741 GAGGGTATTTCAGTAATTTTACAAATC
1 AAGGGTATTTTGGTAATTTTACAAACC
** *
68551768 AAGGGTATTTCAGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACC
* *
68551795 AAGGGTATTTTGGTAATTTCACAAATC
1 AAGGGTATTTTGGTAATTTTACAAACC
*
68551822 AGGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
*
68551849 AGGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
* * **
68551876 CAGTGGCATTTTGGTAATTTTGTAAACC
1 AAG-GGTATTTTGGTAATTTTACAAACC
68551904 AAGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACC
*
68551931 -AGAGGTATTTTGGTGATTT
1 AAG-GGTATTTTGGTAATTT
68551950 GATAAACTAA
Statistics
Matches: 181, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.01
27 156 0.86
28 23 0.13
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.38
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACC
Found at i:68563040 original size:34 final size:34
Alignment explanation
Indices: 68562976--68563042 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
68562966 CTATTACTAT
*
68562976 TACTGTAATGGGCTAAGGCCCACCTGGATACTTA
1 TACTGTAATGGGCTAAGGCCCAACTGGATACTTA
*
68563010 TACTGTAATGGGCTATGGCCCTAACT-GATACTT
1 TACTGTAATGGGCTAAGGCCC-AACTGGATACTT
68563043 GACTGTCACT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 27 0.90
35 3 0.10
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (34 bp):
TACTGTAATGGGCTAAGGCCCAACTGGATACTTA
Found at i:68572292 original size:13 final size:13
Alignment explanation
Indices: 68572274--68572305 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
68572264 CTTAAAGAGC
68572274 CCTTGGTTGGCCA
1 CCTTGGTTGGCCA
68572287 CCTTGGTTGGCCA
1 CCTTGGTTGGCCA
68572300 CCTTGG
1 CCTTGG
68572306 GTGACAGCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.06, C:0.31, G:0.31, T:0.31
Consensus pattern (13 bp):
CCTTGGTTGGCCA
Found at i:68577049 original size:40 final size:40
Alignment explanation
Indices: 68576990--68577116 Score: 220
Period size: 40 Copynumber: 3.2 Consensus size: 40
68576980 TGGGATTTAG
* *
68576990 CGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCC
68577030 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
68577070 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
68577110 CGGATAT
1 CGGATAT
68577117 CATTCGAATA
Statistics
Matches: 84, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
40 83 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
Found at i:68585303 original size:40 final size:40
Alignment explanation
Indices: 68585237--68585387 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
68585227 AAATTGAATG
* * *
68585237 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
68585276 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
68585316 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
68585356 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
68585388 ACATGTTATA
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:68593418 original size:40 final size:39
Alignment explanation
Indices: 68593253--68593420 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 39
68593243 AAATTGAATG
* * * * * **
68593253 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTCGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAC-AGCTT
* * *
68593293 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGCTT
* *
68593333 ATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C-TT
*
68593373 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGCTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GCTT
68593413 ATATCCGG
1 ATATCCGG
68593421 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 98 0.94
41 2 0.02
42 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGCTT
Found at i:68598323 original size:12 final size:12
Alignment explanation
Indices: 68598306--68598331 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
68598296 TGAGAATTTA
68598306 GACTCTTCTGAT
1 GACTCTTCTGAT
68598318 GACTCTTCTGAT
1 GACTCTTCTGAT
68598330 GA
1 GA
68598332 ATTTGAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.38
Consensus pattern (12 bp):
GACTCTTCTGAT
Found at i:68600581 original size:30 final size:30
Alignment explanation
Indices: 68600547--68600607 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
68600537 TCTTTAATAC
*
68600547 AAACTTTGGAAAAATTACATTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
68600577 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
68600607 A
1 A
68600608 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:68615316 original size:40 final size:40
Alignment explanation
Indices: 68615271--68615400 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
68615261 CGGAATATAA
68615271 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
68615311 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
68615351 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
68615391 CCGGATATAA
1 CCGGATATAA
68615401 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:68615415 original size:40 final size:40
Alignment explanation
Indices: 68615287--68615438 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
68615277 ATAACCACGT
* * *
68615287 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
68615327 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
68615367 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
68615407 GCATAATTGTCTTCGAGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCG-GGTCTTAGCCCGGATAT
68615439 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 85 0.93
41 4 0.04
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:68615421 original size:80 final size:80
Alignment explanation
Indices: 68615287--68615436 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
68615277 ATAACCACGT
*
68615287 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCG-GGTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGAGG-CTTAGC
68615351 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
68615367 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGAGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGAGGCTTAG
68615430 CCCGGAT
64 CCCGGAT
68615437 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 56 0.92
81 2 0.03
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGAGGCTTAGCC
CGGATGTAGCCACTA
Found at i:68626941 original size:29 final size:29
Alignment explanation
Indices: 68626908--68627068 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
68626898 GTGACGAGAT
68626908 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
68626937 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
68626966 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
68626995 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
68627024 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
68627053 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
68627069 AAATCGAGTA
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 115 0.98
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:68634406 original size:29 final size:29
Alignment explanation
Indices: 68634373--68634533 Score: 198
Period size: 29 Copynumber: 5.6 Consensus size: 29
68634363 GTGACGAGAT
68634373 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
68634402 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
68634431 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
68634460 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
68634489 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
68634518 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
68634534 AAATCGAGTA
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 115 0.98
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:68639166 original size:31 final size:31
Alignment explanation
Indices: 68639131--68639193 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
68639121 CCTTTTCATA
68639131 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
** *
68639162 TTTCATATTTCATATTACTGGGTCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
68639193 T
1 T
68639194 CACTGTAAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:68639473 original size:26 final size:24
Alignment explanation
Indices: 68639402--68639484 Score: 98
Period size: 26 Copynumber: 3.4 Consensus size: 24
68639392 CTGGAGGCCT
*
68639402 AGCCTCTTTT-AATAACTAGGGC-AA
1 AGCC-CTTTTGAA-AACTGGGGCAAA
68639426 AGCCCTTTTGAAAACTGGGGCAAA
1 AGCCCTTTTGAAAACTGGGGCAAA
*
68639450 AGCCCTTTTCGGTAAACTGGGGCAAA
1 AGCCCTTTT--GAAAACTGGGGCAAA
68639476 AGCCCTTTT
1 AGCCCTTTT
68639485 TGCACTTCCT
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
23 13 0.25
24 17 0.32
26 23 0.43
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AGCCCTTTTGAAAACTGGGGCAAA
Found at i:68643742 original size:29 final size:29
Alignment explanation
Indices: 68643698--68643785 Score: 115
Period size: 29 Copynumber: 3.1 Consensus size: 29
68643688 GAAAGCTTGT
* *
68643698 ATATGAATGTGGTTTGGGCCTAATGGGCT
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
68643727 GTATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
68643756 ATATGAATGAGA-TTGGGCCTAGTGGACC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
68643784 AT
1 AT
68643786 GTGCATGTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
28 16 0.31
29 36 0.69
ACGTcount: A:0.24, C:0.12, G:0.33, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:68648247 original size:28 final size:29
Alignment explanation
Indices: 68648164--68648259 Score: 131
Period size: 29 Copynumber: 3.3 Consensus size: 29
68648154 GAGAGCATGT
* *
68648164 ATATGAATGTGATTTGGGCCTAATAGGCT
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
68648193 GTATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
68648222 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
68648250 ATATGCATGT
1 ATATGAATGT
68648260 ATGTAGACTT
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 23 0.39
29 36 0.61
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:68655496 original size:68 final size:68
Alignment explanation
Indices: 68655417--68655553 Score: 274
Period size: 68 Copynumber: 2.0 Consensus size: 68
68655407 AAGCCCGTGC
68655417 CCACCACCCATGGTCGAGACTATCAAAAGAACATGGGTGTTGGAGAAGCAAACCACATCGCGCAC
1 CCACCACCCATGGTCGAGACTATCAAAAGAACATGGGTGTTGGAGAAGCAAACCACATCGCGCAC
68655482 AGT
66 AGT
68655485 CCACCACCCATGGTCGAGACTATCAAAAGAACATGGGTGTTGGAGAAGCAAACCACATCGCGCAC
1 CCACCACCCATGGTCGAGACTATCAAAAGAACATGGGTGTTGGAGAAGCAAACCACATCGCGCAC
68655550 AGT
66 AGT
68655553 C
1 C
68655554 ATATGATACG
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.34, C:0.28, G:0.23, T:0.15
Consensus pattern (68 bp):
CCACCACCCATGGTCGAGACTATCAAAAGAACATGGGTGTTGGAGAAGCAAACCACATCGCGCAC
AGT
Found at i:68660114 original size:93 final size:93
Alignment explanation
Indices: 68660002--68660173 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
68659992 CGCCCATAAG
* *
68660002 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
68660067 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
68660095 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
68660160 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
68660174 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:68660170 original size:46 final size:46
Alignment explanation
Indices: 68659995--68660170 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
68659985 TGTAACCCGC
* * *
68659995 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
68660041 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
* *
68660091 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
68660134 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
68660171 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:68667661 original size:93 final size:93
Alignment explanation
Indices: 68667549--68667720 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
68667539 CGCCCATAAG
* *
68667549 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68667614 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
68667642 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68667707 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
68667721 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:68667717 original size:46 final size:46
Alignment explanation
Indices: 68667542--68667717 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
68667532 TGTAACCCGC
* * *
68667542 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
68667588 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
68667638 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
68667681 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
68667718 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:68670139 original size:27 final size:27
Alignment explanation
Indices: 68670109--68670835 Score: 1223
Period size: 27 Copynumber: 27.1 Consensus size: 27
68670099 ATCAAGAAAG
68670109 TTACTGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
68670136 TTACTGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
68670163 TTACTGAAATACCCCTGTA-GGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
*
68670189 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
68670216 TTACTGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
*
68670243 TTACCGAAATA-CCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
*
68670269 TTACCGAAATA-CCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
*
68670295 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
*
68670322 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
68670349 TTACTGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
68670376 TTACTGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
68670403 TTACTGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
68670430 TTACTGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
68670457 TTACTGAAATACCCCTGTA-GGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
*
68670483 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
68670510 TTACTGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
*
68670537 TTACCGAAATA-CCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
*
68670563 TTACCGAAATA-CCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
*
68670589 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
*
68670616 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
* * *
68670643 TTACTAAAATACCCCTATATGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
* *
68670670 TTACCGAAATACCCTTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
*
68670697 TTACTAAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
* * *
68670724 TTACCGAAATACCCCTGTAAGGTAAAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
*
68670751 TTACTGAAATACCCCTATAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
68670778 TTACTGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
*
68670805 TTACTAAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
68670832 TTAC
1 TTAC
68670836 CAAGATACCC
Statistics
Matches: 667, Mismatches: 29, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
26 154 0.23
27 513 0.77
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
TTACTGAAATACCCCTGTAGGGTAGAA
Found at i:68670579 original size:294 final size:294
Alignment explanation
Indices: 68670109--68670846 Score: 1343
Period size: 294 Copynumber: 2.5 Consensus size: 294
68670099 ATCAAGAAAG
68670109 TTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATA
1 TTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATA
68670174 CCCCTGTAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGT
66 CCCCTGTAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGT
68670239 AGAATTACCGAAATACCCTGTAGGGTAGAATTACCGAAATACCCTGTAGGGTAGAATTACCGAAA
131 AGAATTACCGAAATACCCTGTAGGGTAGAATTACCGAAATACCCTGTAGGGTAGAATTACCGAAA
* *
68670304 TACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAG
196 TACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAG
*
68670369 GGTAGAATTACTGAAATACCCCTGTAGGGTAGAA
261 GGTAGAATTACCGAAATACCCCTGTAGGGTAGAA
68670403 TTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATA
1 TTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATA
68670468 CCCCTGTAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGT
66 CCCCTGTAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGT
68670533 AGAATTACCGAAATACCCTGTAGGGTAGAATTACCGAAATACCCTGTAGGGTAGAATTACCGAAA
131 AGAATTACCGAAATACCCTGTAGGGTAGAATTACCGAAATACCCTGTAGGGTAGAATTACCGAAA
*
68670598 TACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAT
196 TACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAG
*
68670663 GGTAGAATTACCGAAATACCCTTGTAGGGTAGAA
261 GGTAGAATTACCGAAATACCCCTGTAGGGTAGAA
* * * *
68670697 TTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAAGGTAAAATTACTGAAATA
1 TTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATA
* * *
68670762 CCCCTATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGG
66 CCCCTGTA-GGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGG
68670827 TAGAATTACC-AAGATACCCT
130 TAGAATTACCGAA-ATACCCT
68670847 TCTGGGGTAA
Statistics
Matches: 430, Mismatches: 12, Indels: 3
0.97 0.03 0.01
Matches are distributed among these distances:
294 359 0.83
295 71 0.17
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.25
Consensus pattern (294 bp):
TTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATA
CCCCTGTAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGT
AGAATTACCGAAATACCCTGTAGGGTAGAATTACCGAAATACCCTGTAGGGTAGAATTACCGAAA
TACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAG
GGTAGAATTACCGAAATACCCCTGTAGGGTAGAA
Found at i:68671133 original size:27 final size:28
Alignment explanation
Indices: 68671088--68671196 Score: 118
Period size: 27 Copynumber: 4.0 Consensus size: 28
68671078 GGAGGAAGCG
*
68671088 TTCTGGTGGCTATGTCACAAATATCTGT
1 TTCTGGTGGCTATGACACAAATATCTGT
*
68671116 TTCTGGT-GTTATGACACAAATATCTG-
1 TTCTGGTGGCTATGACACAAATATCTGT
* *
68671142 TTCTGGTGGCTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGACACAAATATCTGT
* * * *
68671169 ATCTGGTGACTCTGTCAC-AATATCTGT
1 TTCTGGTGGCTATGACACAAATATCTGT
68671196 T
1 T
68671197 GACTGATTGA
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 15 0.21
27 48 0.69
28 7 0.10
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (28 bp):
TTCTGGTGGCTATGACACAAATATCTGT
Found at i:68671191 original size:53 final size:54
Alignment explanation
Indices: 68671087--68671196 Score: 143
Period size: 53 Copynumber: 2.1 Consensus size: 54
68671077 TGGAGGAAGC
* * *
68671087 GTTCTGGTGGCTATGTCACAAATATCTGTTTCTGGTGTTATGACACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGTATCTGGTGCTATGACACAAATATCT
* * *
68671141 GTTCTGGTGGCTCTGCCAC-AATATCTGTATCTGGTGACTCTGTCAC-AATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGTATCTGGTG-CTATGACACAAATATCT
68671194 GTT
1 GTT
68671197 GACTGATTGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
53 26 0.53
54 23 0.47
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGTATCTGGTGCTATGACACAAATATCT
Found at i:68671530 original size:27 final size:27
Alignment explanation
Indices: 68671500--68671556 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
68671490 ATTCTGTTAA
* *
68671500 GTGGCTTTGCCACATTATCTG-ATTCTG
1 GTGGCTCTGCCACAATATCTGTA-TCTG
68671527 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
68671554 GTG
1 GTG
68671557 ACGTCGTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:68671726 original size:31 final size:31
Alignment explanation
Indices: 68671691--68671763 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
68671681 TTGCATTCAC
* * *
68671691 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTAATTCTGTCACCTGATACTG
*
68671722 ATTCTGATTCTAATTCTGTCACCTGATTCTG
1 ATTCTGATTCTAATTCTGTCACCTGATACTG
68671753 ATTCTGATTCT
1 ATTCTGATTCT
68671764 CATTTTGATT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTGATACTG
Found at i:68671730 original size:6 final size:6
Alignment explanation
Indices: 68671691--68671784 Score: 75
Period size: 6 Copynumber: 15.3 Consensus size: 6
68671681 TTGCATTCAC
* * *
68671691 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
68671740 -TCACCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCTA ATTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT
68671785 AATGTTTCTT
Statistics
Matches: 68, Mismatches: 14, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
5 3 0.04
6 57 0.84
7 6 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:68673837 original size:27 final size:27
Alignment explanation
Indices: 68673807--68674964 Score: 1729
Period size: 27 Copynumber: 43.1 Consensus size: 27
68673797 ATCAGGAAAG
68673807 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68673834 TTACTGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68673861 TTACCGAAATA-CCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* *
68673887 TTACTGAAATACCCCAGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68673914 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68673941 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68673968 TTATCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68673995 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68674022 TTACTGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* * *
68674049 TTATCGAAATACCCCTCTAGGGAAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* *
68674076 TTACCG-AATACCCCTATAAGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68674102 TTACCAAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
** * *
68674129 TTACTAAAATACCCCTATATGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68674156 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68674183 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
** * *
68674210 TTACTAAAATACCCCTATATGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* *
68674237 TTACCAAAATACCCTTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68674264 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* * *
68674291 TTACCGAAATATCACTGTATGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* *
68674318 TTACCGAAATACCCTTGTATGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68674345 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* * * *
68674372 TTTCTGAAATACCCATGTAGGGCAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* *
68674399 TTACCGAAATACCTCTGCAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68674426 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68674453 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68674480 TTACCGAAATACCCATGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* *
68674507 TTACCGAAATAACCCTATAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68674534 TTATCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68674561 TTACCG-AATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68674587 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68674614 TTATCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68674641 TTATCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68674668 TTACCG-AATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68674694 TTACCGAAATA-CCCTAGTAGGGTAGAA
1 TTACCGAAATACCCCT-GTAGGGTAGAA
*
68674721 TTACCGAAATACCCCTGTACGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* ** *
68674748 TTTCTAAAATACCCCTAT-GTGGTAGAA
1 TTACCGAAATACCCCTGTAG-GGTAGAA
* *
68674775 TTACCGAAATACCCTTGTAAGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68674802 TTA-CGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68674828 TTACCGAAATACCCCTGTAAGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* * *
68674855 TTACTGAAATACCCCTATAAGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* *
68674882 TTACTGAAATACCCCAGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
**
68674909 TTACTAAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* * *
68674936 TTACC-AAGATACCCTTGTGGGGTAAAA
1 TTACCGAA-ATACCCCTGTAGGGTAGAA
68674963 TT
1 TT
68674965 GCCATTTTGC
Statistics
Matches: 1028, Mismatches: 93, Indels: 20
0.90 0.08 0.02
Matches are distributed among these distances:
26 129 0.13
27 895 0.87
28 4 0.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
TTACCGAAATACCCCTGTAGGGTAGAA
Found at i:68675232 original size:27 final size:27
Alignment explanation
Indices: 68675192--68675300 Score: 123
Period size: 27 Copynumber: 4.0 Consensus size: 27
68675182 GGAGGAAGTG
68675192 TTCTGGTGGCTATGTCACAAATATCTGT
1 TTCTGGTGGCTATGTCAC-AATATCTGT
* *
68675220 TTCTGGT-GTTATGACACAAATATCTG-
1 TTCTGGTGGCTATGTCAC-AATATCTGT
* *
68675246 TTCTGGTGGCTCTGCCACAATATCTGT
1 TTCTGGTGGCTATGTCACAATATCTGT
* * *
68675273 ATCTGGTGACTCTGTCACAATATCTGT
1 TTCTGGTGGCTATGTCACAATATCTGT
68675300 T
1 T
68675301 GACTGATTGA
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 15 0.21
27 48 0.69
28 7 0.10
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (27 bp):
TTCTGGTGGCTATGTCACAATATCTGT
Found at i:68675295 original size:53 final size:54
Alignment explanation
Indices: 68675190--68675300 Score: 145
Period size: 53 Copynumber: 2.1 Consensus size: 54
68675180 ATGGAGGAAG
* * *
68675190 TGTTCTGGTGGCTATGTCACAAATATCTGTTTCTGGTGTTATGACACAAATATC
1 TGTTCTGGTGGCTATGCCACAAATATCTGTATCTGGTGCTATGACACAAATATC
* * *
68675244 TGTTCTGGTGGCTCTGCCAC-AATATCTGTATCTGGTGACTCTGTCAC-AATATC
1 TGTTCTGGTGGCTATGCCACAAATATCTGTATCTGGTG-CTATGACACAAATATC
68675297 TGTT
1 TGTT
68675301 GACTGATTGA
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 26 0.52
54 24 0.48
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.39
Consensus pattern (54 bp):
TGTTCTGGTGGCTATGCCACAAATATCTGTATCTGGTGCTATGACACAAATATC
Found at i:68675420 original size:22 final size:22
Alignment explanation
Indices: 68675388--68675446 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
68675378 CCCATTATCG
*
68675388 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
*** *
68675410 ATGGCTTTGTGCCATTTTAACT
1 ATGGCTTTGTGCCAACCTAAAT
*
68675432 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
68675447 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:68675634 original size:27 final size:27
Alignment explanation
Indices: 68675604--68675660 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
68675594 ATTCTGTTAA
* **
68675604 GTGGCTTTGCCACGTTATCTG-ATTCTG
1 GTGGCTCTGCCACAATATCTGTA-TCTG
68675631 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
68675658 GTG
1 GTG
68675661 ACTTCGTCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 25 0.96
28 1 0.04
ACGTcount: A:0.14, C:0.23, G:0.26, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:68675832 original size:6 final size:6
Alignment explanation
Indices: 68675795--68675888 Score: 59
Period size: 6 Copynumber: 15.3 Consensus size: 6
68675785 TTGCATTCAC
* * * *
68675795 ATTCTA ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
68675844 -TCACCTG ATTCTG ATTCTG ATTCTCG -TTTTG ATTCTA ATTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCT-G ATTCTG ATTCTG ATTCTG AT
68675889 AATGTTTCTT
Statistics
Matches: 67, Mismatches: 13, Indels: 16
0.70 0.14 0.17
Matches are distributed among these distances:
5 4 0.06
6 54 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:68675842 original size:31 final size:31
Alignment explanation
Indices: 68675807--68675867 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
68675797 TCTAATTTTG
*
68675807 ATTCTGTTACCTGATACTGATTCTGATTCTA
1 ATTCTGTCACCTGATACTGATTCTGATTCTA
*
68675838 ATTCTGTCACCTGATTCTGATTCTGATTCT
1 ATTCTGTCACCTGATACTGATTCTGATTCT
68675868 CGTTTTGATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.20, C:0.21, G:0.13, T:0.46
Consensus pattern (31 bp):
ATTCTGTCACCTGATACTGATTCTGATTCTA
Found at i:68675897 original size:18 final size:17
Alignment explanation
Indices: 68675876--68675909 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
68675866 CTCGTTTTGA
68675876 TTCTAATTCTGATAATGT
1 TTCTAATTCTG-TAATGT
*
68675894 TTCTTATTCTGTAATG
1 TTCTAATTCTGTAATG
68675910 GGCTAAGGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (17 bp):
TTCTAATTCTGTAATGT
Found at i:68679129 original size:27 final size:27
Alignment explanation
Indices: 68677916--68679128 Score: 1830
Period size: 27 Copynumber: 45.2 Consensus size: 27
68677906 ATCAGGAAAG
68677916 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68677943 TTACCGAAATACCCCTGTAGGGTAG-A
1 TTACCGAAATACCCCTGTAGGGTAGAA
68677969 TTACCGAAATA-CCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* *
68677995 TTACTGAAATA-CCCAGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68678021 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68678048 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68678075 TTATCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68678102 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68678129 TTACCGAAATACCCCTGTATGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68678156 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68678183 TTACCGAAATA-CCCTATAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
**
68678209 TTACTAAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* * *
68678236 TTATCGAAATACCCCTATAGGGAAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68678263 TTACCG-AATACCCCTGTAAGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68678289 TTACCAAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
** * *
68678316 TTACTAAAATACCCCTATATGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68678343 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
** * *
68678370 TTACTAAAATACCCCTATATGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68678397 TTACCGAAATACCCTTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68678424 TTACCGAAATACCCCTGTAAGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68678451 TTACCGAAATATCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
** * *
68678478 TTACTAAAACACCGCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68678505 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68678532 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68678559 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68678586 TTACCGAAATACCCCAGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68678613 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* * *
68678640 TTACCGAAATACCCCTATACGTTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68678667 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68678694 TTACCGAAATACCCATGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68678721 TTACCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68678748 TTATCGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68678775 TTACCG-AATACCCCTATAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68678801 TTACCGAAATACCCCAGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68678828 TTACCGAAATACCCCTGTACGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* ** * *
68678855 TTTCTAAAATACCCCTATATGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* *
68678882 TTACCGAAATACCCTTGTAAGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
** * * *
68678909 TTACTAAAATACCTCTATATGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68678936 TTACCGAAATACCCTTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
68678963 TTA-CGAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
*
68678989 TTACCAAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* *
68679016 TTACTGAAATACCCCTATAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* *
68679043 TTACTGAAATACCCCTGTAGGGTAGAG
1 TTACCGAAATACCCCTGTAGGGTAGAA
**
68679070 TTACTAAAATACCCCTGTAGGGTAGAA
1 TTACCGAAATACCCCTGTAGGGTAGAA
* * *
68679097 TTACC-AAGATACCCTTGTGGGGTAAAA
1 TTACCGAA-ATACCCCTGTAGGGTAGAA
68679124 TTACC
1 TTACC
68679129 ATTGTGGCCC
Statistics
Matches: 1074, Mismatches: 105, Indels: 14
0.90 0.09 0.01
Matches are distributed among these distances:
25 13 0.01
26 144 0.13
27 917 0.85
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (27 bp):
TTACCGAAATACCCCTGTAGGGTAGAA
Found at i:68679398 original size:27 final size:28
Alignment explanation
Indices: 68679353--68679461 Score: 118
Period size: 27 Copynumber: 4.0 Consensus size: 28
68679343 GGAGGAAGCG
* *
68679353 TTCTGGTGGCTATGTCACAAATATTTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
68679381 TTCTGGT-GTTATGCCACAAATATCTG-
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
68679407 TTCTGGTGGCTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
* * * *
68679434 ATCTGGTGACTCTGTCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
68679461 T
1 T
68679462 GACTGATCGA
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 15 0.21
27 48 0.69
28 7 0.10
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.39
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:68679456 original size:53 final size:54
Alignment explanation
Indices: 68679352--68679461 Score: 134
Period size: 53 Copynumber: 2.1 Consensus size: 54
68679342 TGGAGGAAGC
* * * *
68679352 GTTCTGGTGGCTATGTCACAAATATTTGTTTCTGGTGTTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGTATCTGGTGCTATGCCACAAATATCT
* * *
68679406 GTTCTGGTGGCTCTGCCAC-AATATCTGTATCTGGTGACTCTGTCAC-AATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGTATCTGGTG-CTATGCCACAAATATCT
68679459 GTT
1 GTT
68679462 GACTGATCGA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
53 25 0.52
54 23 0.48
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGTATCTGGTGCTATGCCACAAATATCT
Found at i:68679581 original size:22 final size:22
Alignment explanation
Indices: 68679549--68679607 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
68679539 CCCGTTATCG
*
68679549 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
*** *
68679571 ATGGCTTTGTGCCATTTTAACT
1 ATGGCTTTGTGCCAACCTAAAT
*
68679593 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
68679608 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:68679991 original size:31 final size:31
Alignment explanation
Indices: 68679956--68680028 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
68679946 TTGCATTCAC
* * *
68679956 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTAATTCTGTCACCTGATACTG
* *
68679987 ATTCTTATTCTAATTCTGTCACCTGATTCTG
1 ATTCTGATTCTAATTCTGTCACCTGATACTG
68680018 ATTCTGATTCT
1 ATTCTGATTCT
68680029 CATTTTGATT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTGATACTG
Found at i:68680018 original size:6 final size:6
Alignment explanation
Indices: 68679956--68680049 Score: 66
Period size: 6 Copynumber: 15.3 Consensus size: 6
68679946 TTGCATTCAC
* * * *
68679956 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTT ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
68680005 -TCACCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCTA ATTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT
68680050 AATGTTTCTT
Statistics
Matches: 67, Mismatches: 15, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
5 3 0.04
6 56 0.84
7 6 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:68680058 original size:18 final size:17
Alignment explanation
Indices: 68680037--68680070 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
68680027 CTCATTTTGA
68680037 TTCTAATTCTGATAATGT
1 TTCTAATTCTG-TAATGT
*
68680055 TTCTTATTCTGTAATG
1 TTCTAATTCTGTAATG
68680071 GGCTAAGGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (17 bp):
TTCTAATTCTGTAATGT
Found at i:68683892 original size:123 final size:122
Alignment explanation
Indices: 68683672--68683894 Score: 290
Period size: 123 Copynumber: 1.8 Consensus size: 122
68683662 GAATTATGTG
* * * * * * *
68683672 AAATGAAATATGGATGTGTATTGATTATTGATTATGTGTGTATGAGTATTTGAATGATACCCGGG
1 AAATGAAATATGAATGTCTAATGATTATTGATCATGTGTGCATGAGAAATTG-ATGATACCCGGG
* *
68683737 CTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
65 CTAAGTCCCGAAGGCGATTATGCTAGTAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
68683795 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAAATTG-TGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGAT-CATGTGTGCATGAG-AAATTGATGATACCCGG
68683859 GCTAAGTCCCG-AGGAC-ATTTATGCTAGTAATTATAT
64 GCTAAGTCCCGAAGG-CGA-TTATGCTAGTAATTATAT
68683895 CCGGGCTAAG
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
122 4 0.05
123 66 0.77
124 12 0.14
125 4 0.05
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.35
Consensus pattern (122 bp):
AAATGAAATATGAATGTCTAATGATTATTGATCATGTGTGCATGAGAAATTGATGATACCCGGGC
TAAGTCCCGAAGGCGATTATGCTAGTAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:68683977 original size:40 final size:40
Alignment explanation
Indices: 68683841--68683994 Score: 148
Period size: 40 Copynumber: 3.9 Consensus size: 40
68683831 GTGTGCATGA
* *
68683841 GCAAATTGTGATATCCGGGCTAAGTCCCG-AGGACATTTAT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGG-CATTTGT
* * ** * *
68683881 GCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * * *
68683921 GCAAGTTGTTAAATCCGAGCTAAGACCCGAAGGCATTTGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * * *
68683961 GCAAATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGC
68683995 CTTGGTGCGG
Statistics
Matches: 91, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
40 88 0.97
41 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
Found at i:68691633 original size:123 final size:122
Alignment explanation
Indices: 68691413--68691635 Score: 290
Period size: 123 Copynumber: 1.8 Consensus size: 122
68691403 GAATTATGTG
* * * * * * *
68691413 AAATGAAATATGGATGTGTATTGATTATTGATTATGTGTGTATGAGTATTTGAATGATACCCGGG
1 AAATGAAATATGAATGTCTAATGATTATTGATCATGTGTGCATGAGAAATTG-ATGATACCCGGG
* *
68691478 CTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
65 CTAAGTCCCGAAGGCGATTATGCTAGTAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
68691536 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAAATTG-TGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGAT-CATGTGTGCATGAG-AAATTGATGATACCCGG
68691600 GCTAAGTCCCG-AGGAC-ATTTATGCTAGTAATTATAT
64 GCTAAGTCCCGAAGG-CGA-TTATGCTAGTAATTATAT
68691636 CCGGGCTAAG
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
122 4 0.05
123 66 0.77
124 12 0.14
125 4 0.05
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.35
Consensus pattern (122 bp):
AAATGAAATATGAATGTCTAATGATTATTGATCATGTGTGCATGAGAAATTGATGATACCCGGGC
TAAGTCCCGAAGGCGATTATGCTAGTAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:68691718 original size:40 final size:40
Alignment explanation
Indices: 68691582--68691735 Score: 157
Period size: 40 Copynumber: 3.9 Consensus size: 40
68691572 GTGTGCATGA
* *
68691582 GCAAATTGTGATATCCGGGCTAAGTCCCG-AGGACATTTAT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGG-CATTTGT
* * ** * *
68691622 GCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * *
68691662 GCAAGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * * *
68691702 GCAAATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGC
68691736 CTTGGTGCGG
Statistics
Matches: 93, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 90 0.97
41 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
Found at i:68699018 original size:40 final size:40
Alignment explanation
Indices: 68698974--68699099 Score: 243
Period size: 40 Copynumber: 3.1 Consensus size: 40
68698964 CCCGGATGTC
*
68698974 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
1 ATTCCAGCACGAAGCCTGCGGGCCTTTAAGCCCGGATACA
68699014 ATTCCAGCACGAAGCCTGCGGGCCTTTAAGCCCGGATACA
1 ATTCCAGCACGAAGCCTGCGGGCCTTTAAGCCCGGATACA
68699054 ATTCCAGCACGAAGCCTGCGGGCCTTTAAGCCCGGATACA
1 ATTCCAGCACGAAGCCTGCGGGCCTTTAAGCCCGGATACA
68699094 ATTCCA
1 ATTCCA
68699100 CATCAAATAA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 85 1.00
ACGTcount: A:0.25, C:0.32, G:0.24, T:0.19
Consensus pattern (40 bp):
ATTCCAGCACGAAGCCTGCGGGCCTTTAAGCCCGGATACA
Found at i:68707162 original size:29 final size:29
Alignment explanation
Indices: 68707120--68707183 Score: 128
Period size: 29 Copynumber: 2.2 Consensus size: 29
68707110 ACTAATAGAT
68707120 ACCTTTAACAACTAGCATTCCACTTTTGC
1 ACCTTTAACAACTAGCATTCCACTTTTGC
68707149 ACCTTTAACAACTAGCATTCCACTTTTGC
1 ACCTTTAACAACTAGCATTCCACTTTTGC
68707178 ACCTTT
1 ACCTTT
68707184 TGCGATTTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.27, C:0.31, G:0.06, T:0.36
Consensus pattern (29 bp):
ACCTTTAACAACTAGCATTCCACTTTTGC
Found at i:68719031 original size:20 final size:20
Alignment explanation
Indices: 68719006--68719043 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
68718996 GTTTATTCGC
*
68719006 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
68719026 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
68719044 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:68720702 original size:28 final size:28
Alignment explanation
Indices: 68720670--68720738 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
68720660 GCGTAGATCA
68720670 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
68720698 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
68720726 CGATA-TACCCCTA
1 CGAAATTACCCCTA
68720739 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:68727037 original size:20 final size:20
Alignment explanation
Indices: 68727012--68727049 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
68727002 GTTTATTCGC
*
68727012 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
68727032 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
68727050 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:68733881 original size:42 final size:42
Alignment explanation
Indices: 68733768--68733918 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 42
68733758 TAGGATTCCG
*
68733768 ATATGTGATTTCATGTAAGACCAC-GTCTGGGACATTGGCAT-
1 ATATTTGATTTCATGTAAGACC-CTGTCTGGGACATTGGCATC
* * *
68733809 -TGATTTGAGATTTACGTGTAAGACCATGTCTTGGACATTGGCATC
1 AT-ATTT--GATTT-CATGTAAGACCCTGTCTGGGACATTGGCATC
* * * *
68733854 ATATTTTATTTCGTGTAAGACCCTGTCTGGGATAGTGGCATC
1 ATATTTGATTTCATGTAAGACCCTGTCTGGGACATTGGCATC
*
68733896 GATATTTGATTACATGTAAGACC
1 -ATATTTGATTTCATGTAAGACC
68733919 ACATCTAGGA
Statistics
Matches: 90, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
40 1 0.01
41 3 0.03
42 27 0.30
43 28 0.31
44 26 0.29
45 4 0.04
46 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (42 bp):
ATATTTGATTTCATGTAAGACCCTGTCTGGGACATTGGCATC
Found at i:68733937 original size:43 final size:43
Alignment explanation
Indices: 68733766--68733920 Score: 154
Period size: 44 Copynumber: 3.6 Consensus size: 43
68733756 CATAGGATTC
* *
68733766 CGATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCAT
1 CGATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
* * * * *
68733809 TGAT-TTGAGATTTACGTGTAAGACCATGTCTTGGACATTGGCAT
1 CGATATT-TGA-TTACATGTAAGACCACGTCTGGGACATTGGCAT
* * * * *
68733853 C-ATATTTTATTTCGTGTAAGACC-CTGTCTGGGATAGTGGCAT
1 CGATATTTGATTACATGTAAGACCAC-GTCTGGGACATTGGCAT
68733895 CGATATTTGATTACATGTAAGACCAC
1 CGATATTTGATTACATGTAAGACCAC
68733921 ATCTAGGATG
Statistics
Matches: 88, Mismatches: 18, Indels: 11
0.75 0.15 0.09
Matches are distributed among these distances:
42 29 0.33
43 27 0.31
44 32 0.36
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (43 bp):
CGATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
Found at i:68737862 original size:47 final size:49
Alignment explanation
Indices: 68737788--68737923 Score: 169
Period size: 46 Copynumber: 2.9 Consensus size: 49
68737778 TTGGCGTTCG
*
68737788 CATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-A
1 CATCCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCA
* *
68737838 CAT-C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCG
1 CATCCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCA
*
68737881 CATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CATCCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
68737924 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 15
0.79 0.05 0.16
Matches are distributed among these distances:
42 2 0.03
43 4 0.05
44 2 0.03
45 2 0.03
46 29 0.39
47 29 0.39
48 2 0.03
49 1 0.01
50 3 0.04
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (49 bp):
CATCCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCA
Found at i:68737912 original size:93 final size:92
Alignment explanation
Indices: 68737754--68737923 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 92
68737744 GCCCCTAAGT
* *
68737754 GAACTCGGACTCAACTCAATGAGCTTGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTTGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
68737819 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
68737846 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTT-GG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68737910 ACGAGTTCGGATGC
64 ACGAGTTCGGATGC
68737924 TCAACCATCC
Statistics
Matches: 74, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
91 2 0.03
92 24 0.32
93 48 0.65
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTTGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:68737939 original size:46 final size:44
Alignment explanation
Indices: 68737751--68737939 Score: 145
Period size: 46 Copynumber: 4.1 Consensus size: 44
68737741 CCCGCCCCTA
* * * * *
68737751 AGTGAACTCGGACTCAACTCAATGAGCTT-GGCGTTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAG-TTCGG-ATGC-CAACCATCT
68737796 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
68737843 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
68737889 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
68737935 AGTGA
1 AGTGA
68737940 CATGTCACTT
Statistics
Matches: 116, Mismatches: 14, Indels: 27
0.74 0.09 0.17
Matches are distributed among these distances:
43 1 0.01
44 14 0.12
45 28 0.24
46 36 0.31
47 31 0.27
48 1 0.01
49 4 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:68738371 original size:30 final size:30
Alignment explanation
Indices: 68738337--68738396 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
68738327 ATTTAATACG
68738337 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
68738367 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
68738397 GGCTAGGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:68742986 original size:40 final size:38
Alignment explanation
Indices: 68742942--68743070 Score: 129
Period size: 40 Copynumber: 3.3 Consensus size: 38
68742932 GACTCGCTCA
* *
68742942 AATGCCTTCGGGACGAAGCCCGGTTATATCGACTTGCACG
1 AATGCCTTCGGGACTAAGCCCGGTT-TAT-AACTTGCACG
68742982 AATGCCTTCGGGACTTAA-CCCGGGTTTAGTAACTTGCAC-
1 AATGCCTTCGGGAC-TAAGCCC-GGTTTA-TAACTTGCACG
* * *
68743021 AAAGCCTTCGGGA-TTAGCCCGGATTTATTAACTCGCACG
1 AATGCCTTCGGGACTAAGCCCGG-TTTA-TAACTTGCACG
68743060 AATGCCTTCGG
1 AATGCCTTCGG
68743071 ATCCTAGTCC
Statistics
Matches: 76, Mismatches: 7, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
37 4 0.05
38 16 0.21
39 22 0.29
40 27 0.36
41 7 0.09
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (38 bp):
AATGCCTTCGGGACTAAGCCCGGTTTATAACTTGCACG
Found at i:68743070 original size:78 final size:80
Alignment explanation
Indices: 68742940--68743123 Score: 214
Period size: 78 Copynumber: 2.3 Consensus size: 80
68742930 ACGACTCGCT
** ** * *
68742940 CAAATGCCTTCGGGACGAAGCCCGG-TTATATCGACTTGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
68743003 GGGTTTAGTAACTT-GCA
63 GGATATAGTAACTTAGCA
**
68743020 CAAAGCCTTCGGGA-TTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAACCCGGA
*
68743084 TATAGTCACTTAGCA
66 TATAGTAACTTAGCA
68743099 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
68743124 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
77 3 0.03
78 43 0.48
79 29 0.33
80 14 0.16
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAACCCGGA
TATAGTAACTTAGCA
Found at i:68743107 original size:40 final size:37
Alignment explanation
Indices: 68742973--68743123 Score: 122
Period size: 40 Copynumber: 3.8 Consensus size: 37
68742963 GGTTATATCG
* * * *
68742973 ACTTGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTTGCAC-AAAGCCTTC-GGA-TTAGCCCGGATATAGTA
* *
68743013 ACTTGCACAAAGCCTTCGGGATTAGCCCGGATTTATTA
1 ACTTGCACAAAGCCTTC-GGATTAGCCCGGATATAGTA
* * * *
68743051 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTC
1 ACTTGCAC-AAAGCCTTCGGAT--TAGCCCGGATATAGTA
68743091 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 ACTT-GCACAAAGCCTTC-GGA-TTAGCCCGGA
68743124 CATCATTCGA
Statistics
Matches: 92, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
38 25 0.27
39 20 0.22
40 39 0.42
41 7 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (37 bp):
ACTTGCACAAAGCCTTCGGATTAGCCCGGATATAGTA
Found at i:68748680 original size:93 final size:92
Alignment explanation
Indices: 68748570--68748739 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 92
68748560 GCCCCTAAGT
* * *
68748570 GAACTGGGCTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
68748635 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
*
68748662 GAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAAC-TGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68748727 CGAGTTCGGATGC
65 CGAGTTCGGATGC
68748740 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 4 0.05
93 69 0.95
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (92 bp):
GAACTGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:68748736 original size:46 final size:46
Alignment explanation
Indices: 68748565--68748736 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
68748555 AACCTGCCCC
* * * *
68748565 TAAGTGAACT-GGGCTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
68748610 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
68748658 TCA-CGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
68748703 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68748737 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 12 0.11
46 48 0.46
47 28 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:68748755 original size:46 final size:44
Alignment explanation
Indices: 68748612--68748755 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
68748602 CGCATCCATA
68748612 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * * *
68748659 CA-CGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
68748705 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
68748751 AGTGA
1 AGTGA
68748756 CATGTCACTT
Statistics
Matches: 78, Mismatches: 11, Indels: 16
0.74 0.10 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 32 0.41
47 30 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:68749192 original size:30 final size:30
Alignment explanation
Indices: 68749156--68749216 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
68749146 CATTTAATAC
*
68749156 AAACTTTGGAAAAATTACATTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
68749186 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
68749216 A
1 A
68749217 GGCTTAGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:68752672 original size:43 final size:41
Alignment explanation
Indices: 68752525--68752681 Score: 97
Period size: 43 Copynumber: 3.7 Consensus size: 41
68752515 TCTGTTATTG
* * * * *
68752525 TGTAAGACCACATCTGGGACGTTGACATCGACTTTTGTTTTACA
1 TGTAAGACCACGTCTGGGAAG-TGGCATCGA-TTTTG-ATTATA
* * *
68752569 TGTAAGACCATGTCTGGGACA-TCGGCATC-ATATCTGATT-TCG
1 TGTAAGACCACGTCTGGGA-AGT-GGCATCGAT-TTTGATTAT-A
*
68752611 TGTAAGACC-CTGTTTGGGATAGTGGCATCGATGTTTGATTATA
1 TGTAAGACCAC-GTCTGGGA-AGTGGCATCGAT-TTTGATTATA
*
68752654 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGAAG-TGGCAT
68752682 TGTATATGCT
Statistics
Matches: 87, Mismatches: 16, Indels: 21
0.70 0.13 0.17
Matches are distributed among these distances:
42 27 0.31
43 36 0.41
44 24 0.28
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGAAGTGGCATCGATTTTGATTATA
Found at i:68755792 original size:25 final size:26
Alignment explanation
Indices: 68755764--68755821 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
68755754 CCCGATATAT
68755764 GGCTCTTT-GGAGCTTCCCGATTAAA
1 GGCTCTTTAGGAGCTTCCCGATTAAA
* * *
68755789 GGCTCTTTCATGAGCTTTCCGATTAAT
1 GGCTCTTT-AGGAGCTTCCCGATTAAA
68755816 GGCTCT
1 GGCTCT
68755822 CCAGAACTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 8 0.29
27 20 0.71
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
GGCTCTTTAGGAGCTTCCCGATTAAA
Found at i:68762056 original size:2 final size:2
Alignment explanation
Indices: 68762049--68762080 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
68762039 TTTAAAATAA
*
68762049 AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
68762081 TAAGATGGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:68762319 original size:18 final size:19
Alignment explanation
Indices: 68762268--68762321 Score: 67
Period size: 18 Copynumber: 2.8 Consensus size: 19
68762258 TTATGTAAAA
68762268 AAAATATAAA-ATTATCAT
1 AAAATATAAATATTATCAT
*
68762286 AAAGATAAATAATATTATCAT
1 AAA-ATATA-AATATTATCAT
68762307 -AAATATAAATATTAT
1 AAAATATAAATATTAT
68762322 TCAATTAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
18 11 0.35
19 8 0.26
20 4 0.13
21 8 0.26
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (19 bp):
AAAATATAAATATTATCAT
Found at i:68762322 original size:21 final size:21
Alignment explanation
Indices: 68762273--68762322 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
68762263 TAAAAAAAAT
*
68762273 ATAAAATTATCATAAAGATAA
1 ATAATATTATCATAAAGATAA
*
68762294 ATAATATTATCATAAATATAA
1 ATAATATTATCATAAAGATAA
*
68762315 ATATTATT
1 ATAATATT
68762323 CAATTAACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (21 bp):
ATAATATTATCATAAAGATAA
Found at i:68765601 original size:2 final size:2
Alignment explanation
Indices: 68765594--68765622 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
68765584 GAGACTAGTC
68765594 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
68765623 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:68781538 original size:23 final size:23
Alignment explanation
Indices: 68781511--68781568 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
68781501 ACGTTTACCG
*
68781511 CTATTAGAAGCTTTGCTGTATTA
1 CTATTAGAAGCTTTGCTGCATTA
* *
68781534 CTATTAGTAGCTTTGCTGCGTTA
1 CTATTAGAAGCTTTGCTGCATTA
*
68781557 CTATTAGCAGCT
1 CTATTAGAAGCT
68781569 ACGCTGCAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.41
Consensus pattern (23 bp):
CTATTAGAAGCTTTGCTGCATTA
Found at i:68781574 original size:23 final size:23
Alignment explanation
Indices: 68781531--68781575 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
68781521 CTTTGCTGTA
* **
68781531 TTACTATTAGTAGCTTTGCTGCG
1 TTACTATTAGCAGCTACGCTGCG
68781554 TTACTATTAGCAGCTACGCTGC
1 TTACTATTAGCAGCTACGCTGC
68781576 AATATTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (23 bp):
TTACTATTAGCAGCTACGCTGCG
Found at i:68784845 original size:37 final size:37
Alignment explanation
Indices: 68784787--68784968 Score: 247
Period size: 37 Copynumber: 4.9 Consensus size: 37
68784777 GCTCGGAAGT
* * *
68784787 AATCTCCACACGAAGTTATCGGGTCTTACCTGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* * *
68784824 AATCTCCATACGTAGTCATCGGGTCTTACTCGGGCAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* * *
68784861 AATCTCCACACGTAGTCTTTGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* * *
68784898 ACTCTCTACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
68784935 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
68784969 ATATATTTCC
Statistics
Matches: 126, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 126 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:68785183 original size:47 final size:47
Alignment explanation
Indices: 68785131--68785551 Score: 590
Period size: 47 Copynumber: 9.0 Consensus size: 47
68785121 TTTCACACTA
* * ** * *
68785131 GCCATTCGGCTTTACCACATATATGCATTTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
68785178 GCCATTCGGCGTTATCACACATATGCATGCTCACATCCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
68785225 GCCATTCGGCCTCATCACATATATGCATGCTCACATTTATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
68785272 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
68785319 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
68785366 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
68785413 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
68785460 GCCATTCGCCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* ***
68785507 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
68785552 AAAATCCTAA
Statistics
Matches: 333, Mismatches: 41, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 333 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:68785477 original size:25 final size:25
Alignment explanation
Indices: 68785449--68785524 Score: 61
Period size: 23 Copynumber: 3.2 Consensus size: 25
68785439 ATGTTCATAT
68785449 TCACCACATTGGCCATTCGCCCTTA
1 TCACCACATTGGCCATTCGCCCTTA
* * * *
68785474 TCA-CACATAT-G-CATGCTCACAT-
1 TCACCACAT-TGGCCATTCGCCCTTA
* *
68785496 TCATCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGCCCTTA
68785521 TCAC
1 TCAC
68785525 ATATATACAC
Statistics
Matches: 36, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
22 4 0.11
23 13 0.36
24 12 0.33
25 7 0.19
ACGTcount: A:0.24, C:0.36, G:0.12, T:0.29
Consensus pattern (25 bp):
TCACCACATTGGCCATTCGCCCTTA
Done.