Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 224 of 410
Found at i:68785551 original size:94 final size:94
Alignment explanation
Indices: 68785131--68785530 Score: 656
Period size: 94 Copynumber: 4.3 Consensus size: 94
68785121 TTTCACACTA
* * * *
68785131 GCCATTCGGCTTTACCACATATATGCATTTTCATATTCACCACATTGGCCATTCGGCGTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
*
68785196 ACATATGCATGCTCACATCCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
* * * * * *
68785225 GCCATTCGGCCTCATCACATATATGCATGCTCACATTTATCACATTGGCCATTCGGCCTCATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
* * *
68785290 ATATATGCATGTTCACATTCATCACATAG
66 ACATATGCATGCTCACATTCATCACATTG
68785319 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
68785384 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
* *
68785413 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGGCCATTCGCCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
68785478 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
68785507 GCCATTCGGCCTTATCACATATAT
1 GCCATTCGGCCTTATCACATATAT
68785531 ACACATTCAC
Statistics
Matches: 281, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
94 281 1.00
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (94 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
ACATATGCATGCTCACATTCATCACATTG
Found at i:68789354 original size:25 final size:25
Alignment explanation
Indices: 68789317--68789433 Score: 130
Period size: 25 Copynumber: 4.7 Consensus size: 25
68789307 GACAAACCAT
*
68789317 AGCTCGT-ACGAGCTTACCGATTTAC
1 AGCTCGTGA-GAGCATACCGATTTAC
*
68789342 AGCTCGTGAGAGCATACTGATTTAC
1 AGCTCGTGAGAGCATACCGATTTAC
* * *
68789367 AACTCGTGAGAGCATACTGATTTAT
1 AGCTCGTGAGAGCATACCGATTTAC
* *
68789392 AGCTCGAGAGAGCATACCGATTCAC
1 AGCTCGTGAGAGCATACCGATTTAC
*
68789417 AGGTCGT-ATGAGCATAC
1 AGCTCGTGA-GAGCATAC
68789434 ATGTACATAA
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
24 1 0.01
25 77 0.97
26 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (25 bp):
AGCTCGTGAGAGCATACCGATTTAC
Found at i:68792791 original size:12 final size:13
Alignment explanation
Indices: 68792753--68792791 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 13
68792743 AAATATTTGA
68792753 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
68792766 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
68792780 CTTGTT-TTAATT
1 CTTGTTCTTAATT
68792792 TTCCAGGATG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 6 0.26
13 5 0.22
14 12 0.52
ACGTcount: A:0.18, C:0.10, G:0.10, T:0.62
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:68799542 original size:39 final size:39
Alignment explanation
Indices: 68799488--68799778 Score: 432
Period size: 39 Copynumber: 7.5 Consensus size: 39
68799478 AATGGAGAAC
*
68799488 TATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
68799527 TATATCCGGGCTAAGTCCCGAAGGCATTCGT--TGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
68799564 TATATCCGAGCTAAG-CCCGAAGGCATTCGTACTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
68799602 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
68799641 TATATCCGGGCTAA-TCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
68799679 TATATCTGGGCTAAG-CCTCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCC-CGAAGGCATTCGTGCTGGTGT
* * *
68799718 TATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTGT
*
68799757 TATATTCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
68799779 CATCCTTTGT
Statistics
Matches: 234, Mismatches: 10, Indels: 15
0.90 0.04 0.06
Matches are distributed among these distances:
36 15 0.06
37 20 0.09
38 59 0.25
39 119 0.51
40 19 0.08
41 2 0.01
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:68799676 original size:77 final size:78
Alignment explanation
Indices: 68799488--68799778 Score: 432
Period size: 77 Copynumber: 3.8 Consensus size: 78
68799478 AATGGAGAAC
*
68799488 TATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA
68799553 TTCGT--TGGTGT
66 TTCGTGCTGGTGT
* *
68799564 TATATCCGAGCTAAG-CCCGAAGGCATTCGTACTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA
68799628 TTCGTGCTGGTGT
66 TTCGTGCTGGTGT
*
68799641 TATATCCGGGCTAA-TCCCGAAGGCATTCGTGCTGGTGTTATATCTGGGCTAAG-CCTCGAAGGC
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCC-CGAAGGC
68799704 ATTCGTGCTGGTGT
65 ATTCGTGCTGGTGT
* * * *
68799718 TATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTATTATATTCGGGCTTAAAGTCCCG
1 TATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC-T-AAGTCCCG
68799779 CATCCTTTGT
Statistics
Matches: 195, Mismatches: 11, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
75 52 0.27
76 16 0.08
77 88 0.45
78 22 0.11
79 10 0.05
80 5 0.03
81 2 0.01
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (78 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA
TTCGTGCTGGTGT
Found at i:68804608 original size:2 final size:2
Alignment explanation
Indices: 68804603--68804629 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
68804593 ATTTAGGTTT
68804603 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
68804630 GTGTGTGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:68805727 original size:38 final size:38
Alignment explanation
Indices: 68805658--68805900 Score: 364
Period size: 38 Copynumber: 6.3 Consensus size: 38
68805648 TAATGGAGAA
68805658 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGT-CCGAAGGCATTCGTGCTGGTG
68805697 TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG
* *
68805735 TTATATCTGGGCTAAGCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG
68805773 TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG
* *
68805811 TTATATCCGGGCTAAGCCCCGAAGGCATTC-TGCCGGTG
1 TTATATCCGGGCTAAG-TCCGAAGGCATTCGTGCTGGTG
* * *
68805849 TTATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGT-CCGAAGGCATTCGTGCTGGTG
*
68805888 TTATATTCGGGCT
1 TTATATCCGGGCT
68805901 TAAAGTCCTG
Statistics
Matches: 188, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
38 131 0.70
39 57 0.30
ACGTcount: A:0.18, C:0.22, G:0.30, T:0.30
Consensus pattern (38 bp):
TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG
Found at i:68807412 original size:40 final size:40
Alignment explanation
Indices: 68807324--68807466 Score: 218
Period size: 40 Copynumber: 3.6 Consensus size: 40
68807314 TATTCGGATG
*
68807324 ATATCCGGGCTAAGTCCCGAAGGCATTTGTTGTGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACT
68807365 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
68807405 ATATCCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
*
68807445 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
68807467 TACTTGGTTT
Statistics
Matches: 97, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
39 17 0.18
40 51 0.53
41 29 0.30
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:68815075 original size:40 final size:40
Alignment explanation
Indices: 68815020--68815161 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
68815010 TATTCGGATG
*
68815020 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
68815060 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
68815100 ATATCCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
68815140 ATATCC-GGCTAAATCCCAAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
68815162 TACTTGGTTT
Statistics
Matches: 96, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 16 0.17
40 80 0.83
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:68817787 original size:17 final size:19
Alignment explanation
Indices: 68817758--68817794 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
68817748 TTAGCATTCT
68817758 TACCAAGAGTTCAT-CTCA
1 TACCAAGAGTTCATACTCA
68817776 TACCAA-AGTTCATACTCA
1 TACCAAGAGTTCATACTCA
68817794 T
1 T
68817795 GGGTTTTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (19 bp):
TACCAAGAGTTCATACTCA
Found at i:68821629 original size:18 final size:18
Alignment explanation
Indices: 68821606--68821660 Score: 110
Period size: 18 Copynumber: 3.1 Consensus size: 18
68821596 AAATTAAAAA
68821606 TATAAAGAATATAGAAAC
1 TATAAAGAATATAGAAAC
68821624 TATAAAGAATATAGAAAC
1 TATAAAGAATATAGAAAC
68821642 TATAAAGAATATAGAAAC
1 TATAAAGAATATAGAAAC
68821660 T
1 T
68821661 TGGAGTGATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.60, C:0.05, G:0.11, T:0.24
Consensus pattern (18 bp):
TATAAAGAATATAGAAAC
Found at i:68824852 original size:21 final size:21
Alignment explanation
Indices: 68824826--68824865 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
68824816 TTGTTCGACC
68824826 ATGATTCGA-TAGTGATTTGAA
1 ATGATTCGACTA-TGATTTGAA
68824847 ATGATTCGACTATGATTTG
1 ATGATTCGACTATGATTTG
68824866 GTATTGGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (21 bp):
ATGATTCGACTATGATTTGAA
Found at i:68826696 original size:40 final size:41
Alignment explanation
Indices: 68826626--68826720 Score: 106
Period size: 40 Copynumber: 2.4 Consensus size: 41
68826616 ATCTTGGTAT
*
68826626 CGCACACTTAGTG-CATCATATAGCCGAAGCTA-TTCCAAC
1 CGCACACTTAGTGCCATCATATAGCCAAAGCTATTTCCAAC
* * * *
68826665 ACGCACACTTAGTGCCAT-TTGTATCCAAAGCTATTTCGAAC
1 -CGCACACTTAGTGCCATCATATAGCCAAAGCTATTTCCAAC
*
68826706 CGCACACCTAGTGCC
1 CGCACACTTAGTGCC
68826721 GAACATAGTC
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
40 38 0.81
41 9 0.19
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (41 bp):
CGCACACTTAGTGCCATCATATAGCCAAAGCTATTTCCAAC
Found at i:68834949 original size:93 final size:93
Alignment explanation
Indices: 68834841--68835011 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
68834831 GCCCCTAAGT
* *
68834841 GAACTTGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68834906 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
68834934 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68834999 CGAGTTCGGATGC
66 CGAGTTCGGATGC
68835012 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:68835008 original size:46 final size:46
Alignment explanation
Indices: 68834836--68835008 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
68834826 AACCCGCCCC
* * *
68834836 TAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
68834882 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
68834930 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
68834975 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68835009 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.55
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:68838212 original size:27 final size:28
Alignment explanation
Indices: 68838156--68838225 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
68838146 AAATTTGTAC
68838156 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
68838184 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
68838211 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68838226 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:68838236 original size:27 final size:27
Alignment explanation
Indices: 68838156--68838237 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
68838146 AAATTTGTAC
* *
68838156 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
68838184 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
68838211 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
68838238 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:68842334 original size:15 final size:15
Alignment explanation
Indices: 68842316--68842350 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
68842306 TTAATATATT
68842316 GATTTGTAATTTATA
1 GATTTGTAATTTATA
68842331 GATTTGTAATTTATA
1 GATTTGTAATTTATA
68842346 GATTT
1 GATTT
68842351 ATAGTAGAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.54
Consensus pattern (15 bp):
GATTTGTAATTTATA
Found at i:68844014 original size:13 final size:13
Alignment explanation
Indices: 68843996--68844020 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68843986 GGTTAACTTG
68843996 TATATATATGATA
1 TATATATATGATA
68844009 TATATATATGAT
1 TATATATATGAT
68844021 TTGAAATTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TATATATATGATA
Found at i:68851624 original size:27 final size:27
Alignment explanation
Indices: 68851604--68851758 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
68851594 TACTGAAATG
*
68851604 CCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACTGATTTA
* *
68851631 CCCTCGCTTTATAGAATTAC-CATTTTA
1 CCCTCGATTTATAGAATTACTGA-TTTA
*
68851658 CCCTCGATTCT-TAGAATTACTGTTTTA
1 CCCTCGATT-TATAGAATTACTGATTTA
* *
68851685 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACTGATTTA
* *
68851712 CCCTCGATTTACAGAATTA-TCGTTTTA
1 CCCTCGATTTATAGAATTACT-GATTTA
* * *
68851739 CCCTTGATTTACAAAATTAC
1 CCCTCGATTTATAGAATTAC
68851759 CAAAATACCC
Statistics
Matches: 111, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
26 1 0.01
27 109 0.98
28 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACTGATTTA
Found at i:68851663 original size:54 final size:54
Alignment explanation
Indices: 68851604--68851774 Score: 229
Period size: 54 Copynumber: 3.2 Consensus size: 54
68851594 TACTGAAATG
*
68851604 CCCTCGATTTATAGAATTACTGTTTTACCCTCGCTTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTTTA
*
68851658 CCCTCGATTCT-TAGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATT-TATAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTTTA
* * * * ***
68851712 CCCTCGATTTACAGAATTA-TCGTTTTACCCTTGATTTACAAAATTACCAAAATA
1 CCCTCGATTTATAGAATTACT-GTTTTACCCTCGATTTATAGAATTACCATTTTA
68851766 CCCTCGATT
1 CCCTCGATT
68851775 AGGAAAATTA
Statistics
Matches: 104, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
53 2 0.02
54 101 0.97
55 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.40
Consensus pattern (54 bp):
CCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTTTA
Found at i:68851757 original size:81 final size:81
Alignment explanation
Indices: 68851604--68851758 Score: 222
Period size: 81 Copynumber: 1.9 Consensus size: 81
68851594 TACTGAAATG
* * *
68851604 CCCTCGATTTATAGAATTACTGTTTTACCCTCGCTTTATAGAATTACCATTTTACCCTCGATTCT
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTCT
* *
68851669 TAGAATTACTGTTTTA
66 CAAAATTACTGTTTTA
* * *
68851685 CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTTGATT-T
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTCT
68851749 ACAAAATTAC
66 -CAAAATTAC
68851759 CAAAATACCC
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
80 1 0.02
81 64 0.98
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.41
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTCT
CAAAATTACTGTTTTA
Found at i:68851767 original size:27 final size:27
Alignment explanation
Indices: 68851737--68851935 Score: 138
Period size: 27 Copynumber: 7.3 Consensus size: 27
68851727 ATTATCGTTT
68851737 TACCCTTGATTTACAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* *
68851764 TACCCTCGA-TTAGGAAAATTACCAAAA
1 TACCCTTGATTTA-CAAAATTACCAAAA
* **
68851791 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTACAAAATTACCAAAA
*
68851818 TACCCCTGATTTACAAAATTA-CAGAAA
1 TACCCTTGATTTACAAAATTACCA-AAA
* *
68851845 TACCCTTAACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACCA-AAA
** * **
68851874 TACTATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* ** * *
68851901 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
68851928 TACCCTTG
1 TACCCTTG
68851936 TAGGATGAAA
Statistics
Matches: 138, Mismatches: 24, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
26 6 0.04
27 104 0.75
28 10 0.07
29 18 0.13
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACCAAAA
Found at i:68851768 original size:81 final size:81
Alignment explanation
Indices: 68851599--68851774 Score: 210
Period size: 81 Copynumber: 2.2 Consensus size: 81
68851589 CCAACTACTG
* * * *
68851599 AAATGCCCTCGATTTATAGAATTACTGTTTTACCCTCGCTTTATAGAATTACCATTTTACCCTCG
1 AAATACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCG
* * **
68851664 ATTCTTAGAATTACTG
66 ATTCTCAAAATTACCA
*** * * *
68851680 TTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTTG
1 AAATACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCG
68851745 ATT-TACAAAATTACCA
66 ATTCT-CAAAATTACCA
68851761 AAATACCCTCGATT
1 AAATACCCTCGATT
68851775 AGGAAAATTA
Statistics
Matches: 77, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
80 1 0.01
81 76 0.99
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (81 bp):
AAATACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCG
ATTCTCAAAATTACCA
Found at i:68852030 original size:27 final size:27
Alignment explanation
Indices: 68851953--68852030 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
68851943 AAATGACTAA
* *
68851953 AATACCCCT-AATAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
68851980 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
68852007 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
68852031 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 39 0.93
28 2 0.05
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:68852895 original size:26 final size:25
Alignment explanation
Indices: 68852842--68852902 Score: 88
Period size: 25 Copynumber: 2.4 Consensus size: 25
68852832 AGGAAGTGCA
* *
68852842 AAAAGGGCTCTGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAATTTACAG
68852867 AAAAGGGCTTTGCCCCAATTTATCAG
1 AAAAGGGCTTTGCCCCAATTTA-CAG
68852893 -AAAGGGCTTT
1 AAAAGGGCTTT
68852903 TCCCTAGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
25 31 0.94
26 2 0.06
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAATTTACAG
Found at i:68853118 original size:42 final size:42
Alignment explanation
Indices: 68853059--68853150 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
68853049 TAGTCTCCCC
* * ** * *
68853059 AAATGGGCTTGTATACATTCATTGGTATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
68853101 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
68853143 AAATGGGC
1 AAATGGGC
68853151 CTATGGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:68853209 original size:31 final size:31
Alignment explanation
Indices: 68853174--68853252 Score: 158
Period size: 31 Copynumber: 2.5 Consensus size: 31
68853164 CGTTTACAGT
68853174 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
68853205 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
68853236 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
68853253 AACCATTAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:68856318 original size:68 final size:66
Alignment explanation
Indices: 68856246--68856417 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
68856236 CATCATGTGT
* * * *
68856246 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
68856309 TGTAG
62 TGTAG
** * *
68856314 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
68856379 AG
65 AG
* * * *
68856381 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
68856418 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:68856351 original size:64 final size:64
Alignment explanation
Indices: 68856270--68856453 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
68856260 AGACATTATG
* * *
68856270 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
68856334 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
68856399 AA
63 AA
* * *
68856401 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
68856454 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:68859301 original size:27 final size:28
Alignment explanation
Indices: 68859245--68859314 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
68859235 AAAATTGTAC
68859245 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
68859273 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
68859300 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
68859315 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:68859325 original size:27 final size:27
Alignment explanation
Indices: 68859245--68859326 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
68859235 AAAATTGTAC
* *
68859245 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
68859273 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
68859300 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
68859327 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:68867200 original size:27 final size:28
Alignment explanation
Indices: 68867144--68867213 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
68867134 AAATTTGTAC
68867144 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
68867172 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
68867199 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68867214 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:68867224 original size:27 final size:27
Alignment explanation
Indices: 68867144--68867225 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
68867134 AAATTTGTAC
* *
68867144 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
68867172 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
68867199 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
68867226 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:68871943 original size:30 final size:30
Alignment explanation
Indices: 68871871--68871972 Score: 107
Period size: 30 Copynumber: 3.4 Consensus size: 30
68871861 TGGCCAAGAA
* *
68871871 ACACGCCCGTGTGTCACACGCAGC-CTAGCC
1 ACACGCCCGTGTGTCACACACAGCTC-AGAC
* **
68871901 ACATGCTTGTGTGTCACACACAGCTCAGAC
1 ACACGCCCGTGTGTCACACACAGCTCAGAC
* *
68871931 ACACGCCCGTGTGTCACACACAGTTGAGAC
1 ACACGCCCGTGTGTCACACACAGCTCAGAC
* *
68871961 ACAAGCTCGTGT
1 ACACGCCCGTGT
68871973 CCCTGGCCGT
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
30 58 0.98
31 1 0.02
ACGTcount: A:0.25, C:0.34, G:0.23, T:0.19
Consensus pattern (30 bp):
ACACGCCCGTGTGTCACACACAGCTCAGAC
Found at i:68873109 original size:20 final size:21
Alignment explanation
Indices: 68873086--68873129 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
68873076 ACCCTTTCAA
* *
68873086 ATTTTC-TTATTTTCATTTGC
1 ATTTTCATTACTTTCAGTTGC
68873106 A-TTTCATTACTTTCAGTTGC
1 ATTTTCATTACTTTCAGTTGC
68873126 ATTT
1 ATTT
68873130 ACTTTCTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
19 4 0.20
20 14 0.70
21 2 0.10
ACGTcount: A:0.18, C:0.16, G:0.07, T:0.59
Consensus pattern (21 bp):
ATTTTCATTACTTTCAGTTGC
Found at i:68875718 original size:28 final size:27
Alignment explanation
Indices: 68875655--68875724 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
68875645 ATAGTGAGTC
*
68875655 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
68875682 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
68875710 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68875725 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:68883653 original size:28 final size:27
Alignment explanation
Indices: 68883590--68883659 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
68883580 ATAGTGAGTC
68883590 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
68883617 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
68883645 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68883660 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:68888950 original size:40 final size:40
Alignment explanation
Indices: 68888895--68889144 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
68888885 AACATTGGAA
68888895 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
68888935 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
68888975 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
68889015 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
68889055 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
68889094 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
68889135 CTATATCCGG
1 ATATATCCGG
68889145 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:68893710 original size:29 final size:29
Alignment explanation
Indices: 68893677--68893808 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
68893667 GTGACGAGAT
68893677 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
68893706 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
68893735 TGGCACTAAATGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
68893764 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
68893793 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
68893809 GGCTTAAATT
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 87 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:68895807 original size:42 final size:42
Alignment explanation
Indices: 68895760--68895843 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
68895750 ACACTTAGTG
68895760 CCTCATATATTCAATCCGCATTTCACATACTTCAACTTTACA
1 CCTCATATATTCAATCCGCATTTCACATACTTCAACTTTACA
* *
68895802 CCTCATATATTCAGTCCGCATTTCTCATACTTCAACTTTACA
1 CCTCATATATTCAATCCGCATTTCACATACTTCAACTTTACA
68895844 ATCACATTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.29, C:0.31, G:0.04, T:0.37
Consensus pattern (42 bp):
CCTCATATATTCAATCCGCATTTCACATACTTCAACTTTACA
Found at i:68900881 original size:70 final size:70
Alignment explanation
Indices: 68900798--68900945 Score: 251
Period size: 70 Copynumber: 2.1 Consensus size: 70
68900788 TAGTTTATTA
* * *
68900798 CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTG
1 CTAATTAATATGCTACTGTAATACTATAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
68900863 CTTAG
66 CTTAG
68900868 CTAATTAATATGCTACTGTAATACTATAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
1 CTAATTAATATGCTACTGTAATACTATAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
*
68900933 TTTAG
66 CTTAG
*
68900938 CGAATTAA
1 CTAATTAA
68900946 AATGTGTTGT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 73 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (70 bp):
CTAATTAATATGCTACTGTAATACTATAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
CTTAG
Found at i:68901376 original size:44 final size:44
Alignment explanation
Indices: 68901321--68901470 Score: 159
Period size: 44 Copynumber: 3.5 Consensus size: 44
68901311 TATGTGATAT
* *
68901321 CATGTACGACCACGTCTGGGACATTGTCATCGACT-TTTGTTTTA
1 CATGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGTTTTA
* *
68901365 CATGTAAGACCATGTCTGGGACATTGGCATCG-TATCTGATTTT-
1 CATGTAAGACCACGTCTGGGACATTGGCATCGATATTTG-TTTTA
* * * *
68901408 -GTGTAAGACC-CTGTCTGGGACAGTGGCATCGATGTTTG-ATTA
1 CATGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGTTTTA
68901450 CATGTAAGACCACGTCTGGGA
1 CATGTAAGACCACGTCTGGGA
68901471 TGTTGGTATT
Statistics
Matches: 88, Mismatches: 11, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
41 2 0.02
42 28 0.32
43 24 0.27
44 34 0.39
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (44 bp):
CATGTAAGACCACGTCTGGGACATTGGCATCGATATTTGTTTTA
Found at i:68904194 original size:24 final size:24
Alignment explanation
Indices: 68904167--68904229 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
68904157 CTTATTATGT
68904167 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
68904191 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
68904215 TCGCACACATAGTGC
1 TCGCACACATAGTGC
68904230 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:68913928 original size:14 final size:15
Alignment explanation
Indices: 68913899--68913942 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
68913889 GTTATAATTG
68913899 TATGAGCATATGAGT
1 TATGAGCATATGAGT
*
68913914 TATGA-CATTTGAGT
1 TATGAGCATATGAGT
68913928 TATGATGCTATATGA
1 TATGA-GC-ATATGA
68913943 AAATTTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 13 0.54
15 5 0.21
16 1 0.04
17 5 0.21
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.39
Consensus pattern (15 bp):
TATGAGCATATGAGT
Found at i:68923087 original size:29 final size:29
Alignment explanation
Indices: 68923054--68923243 Score: 265
Period size: 29 Copynumber: 6.6 Consensus size: 29
68923044 GTGACAAGAT
68923054 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
68923083 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
68923112 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
68923141 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
68923170 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
68923199 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
68923228 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
68923244 AAATCGAGTA
Statistics
Matches: 146, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
28 2 0.01
29 144 0.99
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:68934634 original size:70 final size:69
Alignment explanation
Indices: 68934534--68934691 Score: 203
Period size: 70 Copynumber: 2.3 Consensus size: 69
68934524 TAGTTTATTA
* *
68934534 CTAATTAATATGTTGCTGTAATACTATAAATTA-TAGGCTATCCAAATTAGGA-AAAATTTATGG
1 CTAATTAATATG-TGTTGTAATACTATAAATTACT-GGCTATCCAAATTAGGACAAAA-TCATGG
68934597 TGCTTAG
63 TGCTTAG
* * *
68934604 CTAATTAATATGCTGTTGTAGTACTGTAAATTACTGGCTGTCCAAATTAGGACAAAATCATGGTG
1 CTAATTAATATG-TGTTGTAATACTATAAATTACTGGCTATCCAAATTAGGACAAAATCATGGTG
*
68934669 TTTAG
65 CTTAG
*
68934674 CTAATTAAAATGTGTTGT
1 CTAATTAATATGTGTTGT
68934692 TATAGATCAA
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
69 6 0.08
70 67 0.86
71 5 0.06
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (69 bp):
CTAATTAATATGTGTTGTAATACTATAAATTACTGGCTATCCAAATTAGGACAAAATCATGGTGC
TTAG
Found at i:68939669 original size:13 final size:13
Alignment explanation
Indices: 68939651--68939677 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
68939641 CCTTATTACA
68939651 TTAAAACACAACC
1 TTAAAACACAACC
68939664 TTAAAACACAACC
1 TTAAAACACAACC
68939677 T
1 T
68939678 AAGCCATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.30, G:0.00, T:0.19
Consensus pattern (13 bp):
TTAAAACACAACC
Found at i:68940462 original size:47 final size:47
Alignment explanation
Indices: 68940390--68940484 Score: 163
Period size: 47 Copynumber: 2.0 Consensus size: 47
68940380 CAGTGGATAT
68940390 TTATTCTTGACTGTAACCTTATTGAGCTGATGGTAAACAATACACAA
1 TTATTCTTGACTGTAACCTTATTGAGCTGATGGTAAACAATACACAA
* * *
68940437 TTATTCTTGGCTGTAACCTTGTTGAGCTGATGGTAATCAATACACAA
1 TTATTCTTGACTGTAACCTTATTGAGCTGATGGTAAACAATACACAA
68940484 T
1 T
68940485 CTCATCGATC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.36
Consensus pattern (47 bp):
TTATTCTTGACTGTAACCTTATTGAGCTGATGGTAAACAATACACAA
Found at i:68946635 original size:15 final size:16
Alignment explanation
Indices: 68946615--68946644 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68946605 AAACTATTTT
68946615 ATTACA-AATTTCACC
1 ATTACATAATTTCACC
68946630 ATTACATAATTTCAC
1 ATTACATAATTTCAC
68946645 TTACTCCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.23, G:0.00, T:0.37
Consensus pattern (16 bp):
ATTACATAATTTCACC
Found at i:68946912 original size:49 final size:50
Alignment explanation
Indices: 68946854--68947084 Score: 150
Period size: 49 Copynumber: 4.6 Consensus size: 50
68946844 ATCTGGTACG
68946854 CATAGTAGCCTGCACTTAGTACTACACATGCGA-CTAACAAT-TCAATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-AATATCAATACA
* * * *** * ** * * *
68946903 CGTAGTAGCCTTCACTCAGTACTACACACATGA-TTGAAGTTGTTAAGTACC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCT-AAAATATCAA-TACA
* * * *** *
68946954 CATAGTAGCCTGCAATTAGTACTACACAT-CGATCT-AACTATTTGGTAAA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAAAATA-TCAATACA
* * *
68947003 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAATCATCTTAA-ACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAAAAT-ATC--AATACA
*
68947055 CATAGTAGCCTGCACATAGTACTACACATG
1 CATAGTAGCCTGCACTTAGTACTACACATG
68947085 TGTTCTCACA
Statistics
Matches: 134, Mismatches: 38, Indels: 17
0.71 0.20 0.09
Matches are distributed among these distances:
49 59 0.44
50 13 0.10
51 32 0.24
52 30 0.22
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.27
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAAAATATCAATACA
Found at i:68947027 original size:100 final size:100
Alignment explanation
Indices: 68946849--68947031 Score: 269
Period size: 100 Copynumber: 1.8 Consensus size: 100
68946839 AAGCTATCTG
* * *
68946849 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTAACAATTCAATACACGTAGTAGCCT
1 GTACCCATAGTAGCCTGCAATTAGTACTACACATGCGACTAACAATTCAATAAACGTAGTAGCCT
*
68946914 TCACTCAGTACTACACACATGATTGAAGTTGTTAA
66 GCACTCAGTACTACACACATGATTGAAGTTGTTAA
* ***
68946949 GTACCCATAGTAGCCTGCAATTAGTACTACACAT-CGATCTAACTATTTGGTAAACGTAGTAGCC
1 GTACCCATAGTAGCCTGCAATTAGTACTACACATGCGA-CTAACAATTCAATAAACGTAGTAGCC
*
68947013 TGCACTTAGTACTACACAC
65 TGCACTCAGTACTACACAC
68947032 GTGACCTAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 3 0.04
100 70 0.96
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (100 bp):
GTACCCATAGTAGCCTGCAATTAGTACTACACATGCGACTAACAATTCAATAAACGTAGTAGCCT
GCACTCAGTACTACACACATGATTGAAGTTGTTAA
Found at i:68949833 original size:40 final size:40
Alignment explanation
Indices: 68949774--68950034 Score: 400
Period size: 40 Copynumber: 6.5 Consensus size: 40
68949764 CATTTGAATG
* *
68949774 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGTGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
68949814 ATATCCGGGCTAAGACCCGAGGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
68949854 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
68949894 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
68949934 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * * *
68949974 ATGTCCAGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
68950014 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
68950035 AAACTTGGGT
Statistics
Matches: 205, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
38 1 0.00
39 12 0.06
40 192 0.94
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:68953367 original size:15 final size:15
Alignment explanation
Indices: 68953347--68953377 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
68953337 ACAATATCAG
68953347 AATAAAAGACACAAA
1 AATAAAAGACACAAA
68953362 AATAAAAGACACAAA
1 AATAAAAGACACAAA
68953377 A
1 A
68953378 CAAAGCTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.74, C:0.13, G:0.06, T:0.06
Consensus pattern (15 bp):
AATAAAAGACACAAA
Found at i:68963140 original size:23 final size:23
Alignment explanation
Indices: 68963088--68963217 Score: 127
Period size: 23 Copynumber: 5.7 Consensus size: 23
68963078 CAAAGTGCCA
* * *
68963088 CACTGTAATATACCCGAAGCTAT
1 CACTGTAATGTAGCCGAAGCTAC
* * *
68963111 CATTGTAACGTAGCTGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
* *
68963134 CACTGTATTGTAGCCAAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
* *
68963157 CACTTTATTGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
*
68963180 CACTG-AGATGTAGCCAAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
* *
68963203 CACTATATTGTAGCC
1 CACTGTAATGTAGCC
68963218 TATAGATTCC
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
22 1 0.01
23 85 0.98
24 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (23 bp):
CACTGTAATGTAGCCGAAGCTAC
Found at i:68963212 original size:46 final size:46
Alignment explanation
Indices: 68963120--68963217 Score: 153
Period size: 46 Copynumber: 2.1 Consensus size: 46
68963110 TCATTGTAAC
* * *
68963120 GTAGCTGAAGCTACCACTGTATTGTAGCCAAAGCTACCACTTTATT
1 GTAGCCGAAGCTACCACTGTAATGTAGCCAAAGCTACCACTATATT
68963166 GTAGCCGAAGCTACCACTG-AGATGTAGCCAAAGCTACCACTATATT
1 GTAGCCGAAGCTACCACTGTA-ATGTAGCCAAAGCTACCACTATATT
68963212 GTAGCC
1 GTAGCC
68963218 TATAGATTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
45 1 0.02
46 47 0.98
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (46 bp):
GTAGCCGAAGCTACCACTGTAATGTAGCCAAAGCTACCACTATATT
Found at i:68963748 original size:29 final size:29
Alignment explanation
Indices: 68963687--68963748 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
68963677 CAAATTTTGG
* *
68963687 AAAACTTACAATTTTACCCCGAACTTTTC
1 AAAAATTACAATTTTACCCCGAACTTGTC
* *
68963716 AAAAATTACACTTTTACCCCTAAGCTTGT-
1 AAAAATTACAATTTTACCCCGAA-CTTGTC
68963745 AAAA
1 AAAA
68963749 TAATTTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 24 0.86
30 4 0.14
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (29 bp):
AAAAATTACAATTTTACCCCGAACTTGTC
Found at i:68966470 original size:101 final size:100
Alignment explanation
Indices: 68966290--68966476 Score: 284
Period size: 101 Copynumber: 1.9 Consensus size: 100
68966280 AAGCTATCTA
* * * *
68966290 GTACGCATAGTAGCCTGTAGTTAGTACTACACATACGACCAACAATCCGGTACATGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATACAACCAACAATCCGGTACACGTAGTAGCCT
68966355 ACACTTAGTACTACACACGTGATTGAAGTTGTCGG
66 ACACTTAGTACTACACACGTGATTGAAGTTGTCGG
* * * *
68966390 GTACGCATGGTAGCCTGCACTTAGTACTACACATGCAACCTAACTATCTGGTACACGTAGTAGCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATACAACC-AACAATCCGGTACACGTAGTAGCC
*
68966455 TGCACTTAGTACTACACACGTG
65 TACACTTAGTACTACACACGTG
68966477 TCCTAAAACC
Statistics
Matches: 77, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 35 0.45
101 42 0.55
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (100 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATACAACCAACAATCCGGTACACGTAGTAGCCT
ACACTTAGTACTACACACGTGATTGAAGTTGTCGG
Found at i:68966482 original size:50 final size:50
Alignment explanation
Indices: 68966283--68966524 Score: 164
Period size: 50 Copynumber: 4.8 Consensus size: 50
68966273 GTAACCGAAG
* * * * **
68966283 CTATCTAGTACGCATAGTAGCCTGTAGTTAGTACTACACATACGACC-AA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
* * ** * * *
68966332 CAATCCGGTACATGTAGTAGCCTACACTTAGTACTACACACGTGA-TTGAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCT-AA
* * * * * * *
68966382 GTTGTCGGGTACGCATGGTAGCCTGCACTTAGTACTACACATGCAACCTAA
1 -CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
* * *
68966433 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGTCCTAAAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCT--AA
* *** * * *
68966485 CCATCTTAAACACATAGTAGCCTCCACATAATACTACACA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
68966525 TGTGTTTTCA
Statistics
Matches: 143, Mismatches: 44, Indels: 9
0.73 0.22 0.05
Matches are distributed among these distances:
49 33 0.23
50 40 0.28
51 35 0.24
52 35 0.24
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
Found at i:68979779 original size:27 final size:26
Alignment explanation
Indices: 68979731--68979790 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
68979721 GCGAAGCTGC
*
68979731 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
68979758 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
68979784 CAGATAT
1 CAGATAT
68979791 ATATATATGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:68987236 original size:27 final size:26
Alignment explanation
Indices: 68987188--68987245 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
68987178 GCGAAGCTGG
*
68987188 CAGATATTGTGACGAAGTCACCAAATA
1 CAGATATTGTGACGAAGCCACCAAA-A
* * * *
68987215 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAAAA
68987241 CAGAT
1 CAGAT
68987246 CTAAATATGT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAAAA
Found at i:68987294 original size:71 final size:67
Alignment explanation
Indices: 68987215--68987356 Score: 185
Period size: 67 Copynumber: 2.1 Consensus size: 67
68987205 TCACCAAATA
* * *
68987215 CAGATATTGTGGCTAGGCCACCAGAACAGATCTAAATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACAAAGCCACCAGAACAGA--T--ATATGTGGCGAAGCCACCAGATTGCAGCGA
*
68987280 GGCTGC
62 GGCTAC
* * *
68987286 CAGATATTGTGACAAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGTAGCGAGGCT
1 CAGATATTGTGACAAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
68987351 AC
66 AC
68987353 CAGA
1 CAGA
68987357 ACGCTTCCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
67 37 0.58
69 1 0.02
71 26 0.41
ACGTcount: A:0.32, C:0.23, G:0.27, T:0.18
Consensus pattern (67 bp):
CAGATATTGTGACAAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
AC
Found at i:68990059 original size:28 final size:29
Alignment explanation
Indices: 68990027--68990125 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
68990017 ATAATAAGCC
*
68990027 CGCACACTTAGTGCTTA-ATAGTTGAACT
1 CGCACACTTAGTGCTTACATAATTGAACT
* **
68990055 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATTGAACT
* *
68990083 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATTGAACT
68990112 CGCACACTTAGTGC
1 CGCACACTTAGTGC
68990126 CAATTCATGA
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.60
29 19 0.32
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATTGAACT
Found at i:68995827 original size:20 final size:20
Alignment explanation
Indices: 68995794--68995848 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
68995784 ATACGTGGGA
68995794 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
*
68995811 ATATGTTATGCACATGATATG
1 -TATGATATGCACATGATATG
68995832 TATGATATGCACATGAT
1 TATGATATGCACATGAT
68995849 GAATTCATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 7 0.22
20 23 0.72
21 2 0.06
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:68995976 original size:52 final size:51
Alignment explanation
Indices: 68995898--68996010 Score: 208
Period size: 52 Copynumber: 2.2 Consensus size: 51
68995888 GAGAAAGTGC
*
68995898 AAAAGGGCTTATGCCCGAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
68995950 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
68996001 AAAAGGGCTT
1 AAAAGGGCTT
68996011 TACCCTAGTT
Statistics
Matches: 60, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
51 25 0.42
52 35 0.58
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:68996020 original size:25 final size:26
Alignment explanation
Indices: 68995898--68996010 Score: 174
Period size: 26 Copynumber: 4.4 Consensus size: 26
68995888 GAGAAAGTGC
* **
68995898 AAAAGGGCTTATGCCCGAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
68995924 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
68995950 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
68995976 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
68996001 AAAAGGGCTT
1 AAAAGGGCTT
68996011 TACCCTAGTT
Statistics
Matches: 80, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 23 0.29
26 57 0.71
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:68999045 original size:37 final size:37
Alignment explanation
Indices: 68998995--68999128 Score: 241
Period size: 37 Copynumber: 3.6 Consensus size: 37
68998985 TTATTACGAA
68998995 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
68999032 GTCTTACCCGGACATAATCTCCACACGTAGTCATCCG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
* *
68999069 GTCTTACCCGGACGTAATCTCCACATGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
68999106 GTCTTACCCGGACATAATCTCCA
1 GTCTTACCCGGACATAATCTCCA
68999129 AGTTTCATGT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 92 1.00
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:68999281 original size:48 final size:48
Alignment explanation
Indices: 68999162--68999935 Score: 1197
Period size: 48 Copynumber: 16.0 Consensus size: 48
68999152 TGTTACAACA
* * * *
68999162 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
68999210 TTCACATTCGCCATTCGCCATTCGGCTTTACGACATATACATATCTCATATATAT
1 TTCACATT----A---GCCATTCGGCTTTACCACATATACATATCACACATATAT
*
68999265 TTCACATTAGCCATTCGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
68999313 TTCACAATAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
68999361 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
68999409 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAAAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
68999457 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
68999505 TTCACATTAGCCATTCGGCTTTACCACATCTACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
68999553 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
68999601 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
68999649 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
68999697 TTCACATTAGCCATTCGGCTTTACGACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
68999745 TTCACATTCGCCATTCGACTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
68999793 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
68999841 TTCACATTCGCCATTCGGCCTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
68999889 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATA
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATA
68999936 GATATTTATC
Statistics
Matches: 675, Mismatches: 44, Indels: 14
0.92 0.06 0.02
Matches are distributed among these distances:
48 629 0.93
51 1 0.00
52 1 0.00
55 44 0.07
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:69009455 original size:29 final size:29
Alignment explanation
Indices: 69009422--69009524 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
69009412 CCTCCGAACT
** * * *
69009422 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
69009451 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
69009480 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
69009509 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
69009525 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:69017489 original size:29 final size:29
Alignment explanation
Indices: 69017456--69017558 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
69017446 CCTCCGAACT
** * * *
69017456 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
69017485 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
69017514 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
69017543 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
69017559 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:69019264 original size:20 final size:20
Alignment explanation
Indices: 69019231--69019285 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
69019221 TCACATGGGA
69019231 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
*
69019248 ATATGTTATGCACATGATATG
1 -TATGATATGCACATGATATG
69019269 TATGATATGCACATGAT
1 TATGATATGCACATGAT
69019286 GAATTCATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 7 0.22
20 23 0.72
21 2 0.06
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:69019413 original size:52 final size:51
Alignment explanation
Indices: 69019335--69019447 Score: 208
Period size: 52 Copynumber: 2.2 Consensus size: 51
69019325 GAGGAAGTCC
*
69019335 AAAAGGGCTTATGCCCGAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
69019387 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
69019438 AAAAGGGCTT
1 AAAAGGGCTT
69019448 TACCCTAGTT
Statistics
Matches: 60, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
51 25 0.42
52 35 0.58
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:69019457 original size:25 final size:26
Alignment explanation
Indices: 69019335--69019447 Score: 174
Period size: 26 Copynumber: 4.4 Consensus size: 26
69019325 GAGGAAGTCC
* **
69019335 AAAAGGGCTTATGCCCGAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
69019361 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
69019387 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
69019413 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
69019438 AAAAGGGCTT
1 AAAAGGGCTT
69019448 TACCCTAGTT
Statistics
Matches: 80, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 23 0.29
26 57 0.71
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:69020474 original size:43 final size:42
Alignment explanation
Indices: 69020427--69020536 Score: 109
Period size: 42 Copynumber: 2.6 Consensus size: 42
69020417 ACAATGCCAA
69020427 GTCCCAGATGTGGTCTTACATGTAATCAAATATAT-ATGCC-ACT
1 GTCCCAGATGTGGTCTTACATGTAAT-AAA-ATATGATGCCGA-T
* * * *
69020470 GTCCCAAATAG-GGTTTTACAAGAAATAAAATATGATGCCGAT
1 GTCCCAGAT-GTGGTCTTACATGTAATAAAATATGATGCCGAT
**
69020512 GTCCCAGACATGGTCTTACATGTAA
1 GTCCCAGATGTGGTCTTACATGTAA
69020537 ATCATAAGTC
Statistics
Matches: 53, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
41 4 0.08
42 27 0.51
43 21 0.40
44 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (42 bp):
GTCCCAGATGTGGTCTTACATGTAATAAAATATGATGCCGAT
Found at i:69027958 original size:29 final size:28
Alignment explanation
Indices: 69027916--69027971 Score: 94
Period size: 29 Copynumber: 2.0 Consensus size: 28
69027906 TGTGAGTTAT
*
69027916 ACTGATTTGGCTTCGGGCCATAAATATCG
1 ACTGATTTGGCTTCGGACCAT-AATATCG
69027945 ACTGATTTGGCTTCGGACCATAATATC
1 ACTGATTTGGCTTCGGACCATAATATC
69027972 AGTAATTCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 6 0.23
29 20 0.77
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32
Consensus pattern (28 bp):
ACTGATTTGGCTTCGGACCATAATATCG
Found at i:69029072 original size:17 final size:17
Alignment explanation
Indices: 69029050--69029084 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
69029040 CACGACCTCA
69029050 CACACGGGCGTGCATGG
1 CACACGGGCGTGCATGG
*
69029067 CACACGGGCGTGTATGG
1 CACACGGGCGTGCATGG
69029084 C
1 C
69029085 CATTTTTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.29, G:0.40, T:0.14
Consensus pattern (17 bp):
CACACGGGCGTGCATGG
Found at i:69032720 original size:29 final size:28
Alignment explanation
Indices: 69032687--69032742 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
69032677 GGGTTATACC
*
69032687 GATTTGGCTTCTGGCCATGAATATCAGTT
1 GATTTGGCTTCGGGCCATG-ATATCAGTT
*
69032716 GATTTGGGTTCGGGCCATGATATCAGT
1 GATTTGGCTTCGGGCCATGATATCAGT
69032743 ATTTTAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 8 0.32
29 17 0.68
ACGTcount: A:0.20, C:0.16, G:0.29, T:0.36
Consensus pattern (28 bp):
GATTTGGCTTCGGGCCATGATATCAGTT
Found at i:69035859 original size:24 final size:24
Alignment explanation
Indices: 69035827--69035934 Score: 92
Period size: 24 Copynumber: 4.5 Consensus size: 24
69035817 TACTTATTCA
*
69035827 CACACATAGTGCCACGT-TTCCTCG
1 CACACATAGTGCCACGTAGT-CTCG
*
69035851 CACACATAGTGCCATGTAGTCTCG
1 CACACATAGTGCCACGTAGTCTCG
* * * *
69035875 CACACATAGTGCCACTTATTTTTG
1 CACACATAGTGCCACGTAGTCTCG
* * * ** *
69035899 CACATATAGTGCCGCATAACCTTG
1 CACACATAGTGCCACGTAGTCTCG
69035923 CACACATAGTGC
1 CACACATAGTGC
69035935 TAAAATTTCT
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
24 68 0.99
25 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.27
Consensus pattern (24 bp):
CACACATAGTGCCACGTAGTCTCG
Found at i:69045543 original size:40 final size:40
Alignment explanation
Indices: 69045261--69045529 Score: 405
Period size: 40 Copynumber: 6.7 Consensus size: 40
69045251 TATTCGGTTG
* * *
69045261 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* ** *
69045301 A-ATTCCGGGCTAAGTCCCGGTGGCAATTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
69045341 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
69045381 TTAACCGGGCTAAATCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
69045421 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
69045461 TTAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
69045501 ATAACCAGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
69045530 AGCAAGTAGC
Statistics
Matches: 206, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.00
40 204 0.99
41 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:69053478 original size:119 final size:120
Alignment explanation
Indices: 69053265--69053539 Score: 444
Period size: 119 Copynumber: 2.3 Consensus size: 120
69053255 TATTCGGATG
** **
69053265 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGTTAGTGACCAATTCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACCAATAACGGGCTAAGTCCCGAAGGCA
69053330 ATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 ATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
69053385 TTAACCGGGCTAAGTCCCGAAGGCAATTGTGCAAGTTA-CTATAACGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACCAATAACGGGCTAAGTCCCGAAGGCA
* *
69053449 TTTGTGCGAGTTACTTTAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 ATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
69053504 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT
69053540 AGCTATATCC
Statistics
Matches: 142, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
119 109 0.77
120 33 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACCAATAACGGGCTAAGTCCCGAAGGCA
ATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:69053546 original size:40 final size:40
Alignment explanation
Indices: 69053265--69053532 Score: 423
Period size: 40 Copynumber: 6.7 Consensus size: 40
69053255 TATTCGGATG
** * *
69053265 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGTTAGTGACC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
69053305 A-ATTCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
69053345 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
69053385 TTAACCGGGCTAAGTCCCGAAGGCAATTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
69053425 ATAA-CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
69053464 TTAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
69053504 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
69053533 AGCAAGTAGC
Statistics
Matches: 209, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.18
40 171 0.82
41 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:69060099 original size:35 final size:38
Alignment explanation
Indices: 69060046--69060152 Score: 175
Period size: 35 Copynumber: 2.8 Consensus size: 38
69060036 GTACATAATA
69060046 ATATATGTGATAAGGCCTAATGGCCGATGTGAAATG-T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGAAATGAT
69060083 ATATAT-TGATAA-GCCTAATGGCCGATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTG-AAATG-AT
69060121 ATATATGTGATAAGGCCTAATGGCCGATGTGA
1 ATATATGTGATAAGGCCTAATGGCCGATGTGA
69060153 TGAATGTGAA
Statistics
Matches: 65, Mismatches: 0, Indels: 8
0.89 0.00 0.11
Matches are distributed among these distances:
35 17 0.26
36 11 0.17
37 6 0.09
38 7 0.11
39 7 0.11
40 17 0.26
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.30
Consensus pattern (38 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGAAATGAT
Found at i:69060163 original size:49 final size:49
Alignment explanation
Indices: 69060107--69060459 Score: 541
Period size: 49 Copynumber: 7.4 Consensus size: 49
69060097 CTAATGGCCG
69060107 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
69060156 ATGTGAAAGTGCATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
69060205 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
69060254 ATGTGAAAATGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGA
1 ATGTGAAAATG--TATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
69060305 ATGTGAAAGTGTATATATATGTG---A----TAA-GGCC--TGTGATGA
1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
69060344 ATGTGAAAGTGTATATATATGTG-TAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
69060392 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC-ACGTGATGA
1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
69060440 ATGTGAAAGTGTATATATAT
1 ATGTGAAAATGTATATATAT
69060460 ATGTGGTAAA
Statistics
Matches: 282, Mismatches: 10, Indels: 25
0.89 0.03 0.08
Matches are distributed among these distances:
39 30 0.11
41 5 0.02
42 3 0.01
45 3 0.01
46 5 0.02
48 57 0.20
49 132 0.47
51 47 0.17
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (49 bp):
ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:69060222 original size:98 final size:97
Alignment explanation
Indices: 69060107--69060459 Score: 555
Period size: 100 Copynumber: 3.7 Consensus size: 97
69060097 CTAATGGCCG
*
69060107 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATAT
1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC-ATGTGATGAATGTGAAAGTGTATAT
69060172 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
65 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
69060205 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC-ATGTGATGAATGTG-AAA-GTGTAT
*
69060270 ATATATGTGATAAGGCCTAATGGCCGACGTGATGA
63 ATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
69060305 ATGTGAAAGTGTATATATATGTG---A----TAA-GGCC-TGTGATGAATGTGAAAGTGTATATA
1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCATGTGATGAATGTGAAAGTGTATATA
69060361 TATGTG-TAAGGCCTAATGGCCGATGTGATGA
66 TATGTGATAAGGCCTAATGGCCGATGTGATGA
*
69060392 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCACGTGATGAATGTGAAAGTGTATATA
1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCATGTGATGAATGTGAAAGTGTATATA
69060457 TAT
66 TAT
69060460 ATGTGGTAAA
Statistics
Matches: 236, Mismatches: 8, Indels: 24
0.88 0.03 0.09
Matches are distributed among these distances:
87 46 0.19
88 14 0.06
89 3 0.01
90 14 0.06
92 4 0.02
93 3 0.01
94 3 0.01
95 4 0.02
96 27 0.11
97 1 0.00
98 54 0.23
99 3 0.01
100 60 0.25
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (97 bp):
ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:69060341 original size:39 final size:39
Alignment explanation
Indices: 69060298--69060423 Score: 162
Period size: 39 Copynumber: 3.0 Consensus size: 39
69060288 AATGGCCGAC
69060298 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
69060337 GTGATGAATGTGAAAGTGTATATATATGTGTAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTG--A----TAA-GGCC--T
*
69060385 GTGATGAATGTGAAAATGTATATATATGTGATAAGGCCT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
69060424 AATGGCCACG
Statistics
Matches: 77, Mismatches: 1, Indels: 18
0.80 0.01 0.19
Matches are distributed among these distances:
39 31 0.40
41 5 0.06
42 3 0.04
45 3 0.04
46 5 0.06
48 30 0.39
ACGTcount: A:0.33, C:0.06, G:0.28, T:0.33
Consensus pattern (39 bp):
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
Found at i:69060392 original size:48 final size:48
Alignment explanation
Indices: 69060332--69060459 Score: 215
Period size: 48 Copynumber: 2.7 Consensus size: 48
69060322 TATGTGATAA
69060332 GGCC-TGTGATGAATGTGAAAGTGTATATATATGTG-TAAGGCCTAAT
1 GGCCATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
*
69060378 GGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAAT
1 GGCC-ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
*
69060427 GGCCACGTGATGAATGTGAAAGTGTATATATAT
1 GGCCATGTGATGAATGTGAAAGTGTATATATAT
69060460 ATGTGGTAAA
Statistics
Matches: 76, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
46 4 0.05
48 57 0.75
49 15 0.20
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.31
Consensus pattern (48 bp):
GGCCATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
Found at i:69060394 original size:87 final size:90
Alignment explanation
Indices: 69060246--69060423 Score: 308
Period size: 87 Copynumber: 2.0 Consensus size: 90
69060236 TAATGGCCGA
69060246 TGTGATGAATGTGAAAATGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGA
1 TGTGATGAATGTGAAAATGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGA
*
69060311 AAGTGTATATATATGTGATAAGGCC
66 AAATGTATATATATGTGATAAGGCC
* *
69060336 TGTGATGAATGTG-AAA-GTGTATATATATGTG-TAAGGCCTAATGGCCGATGTGATGAATGTGA
1 TGTGATGAATGTGAAAATGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGA
69060398 AAATGTATATATATGTGATAAGGCC
66 AAATGTATATATATGTGATAAGGCC
69060423 T
1 T
69060424 AATGGCCACG
Statistics
Matches: 85, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
87 55 0.65
88 14 0.16
89 3 0.04
90 13 0.15
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.32
Consensus pattern (90 bp):
TGTGATGAATGTGAAAATGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGA
AAATGTATATATATGTGATAAGGCC
Found at i:69060583 original size:37 final size:36
Alignment explanation
Indices: 69060528--69060614 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
69060518 AACTTGGAAA
69060528 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
69060566 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
69060603 TATGTCCGGGTA
1 TATGTCCGGGTA
69060615 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:69062543 original size:40 final size:40
Alignment explanation
Indices: 69062485--69062756 Score: 454
Period size: 40 Copynumber: 6.8 Consensus size: 40
69062475 GAGAATTGAG
69062485 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
69062525 AACGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
69062565 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
69062605 AATGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
69062645 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
69062685 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
69062725 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCA
69062757 ATCATGCTGG
Statistics
Matches: 220, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 220 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:69063594 original size:40 final size:41
Alignment explanation
Indices: 69063499--69063601 Score: 113
Period size: 41 Copynumber: 2.5 Consensus size: 41
69063489 GAATGGTATT
* ** * *
69063499 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATC
1 CGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAAATC
69063540 CGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TCACTATAA-C
1 CGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTCACTA-AATC
*
69063580 CGGGCTATGTCCCGAAGACAAT
1 CGGGCTATGTCCCGAAGGCAAT
69063602 CGAGCGAGTC
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
39 2 0.04
40 24 0.45
41 26 0.49
42 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.23
Consensus pattern (41 bp):
CGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAAATC
Found at i:69063617 original size:40 final size:40
Alignment explanation
Indices: 69063539--69063622 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
69063529 GTGACTAAAT
* * *
69063539 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
69063579 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
69063619 CCGG
1 CCGG
69063623 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:69066475 original size:49 final size:49
Alignment explanation
Indices: 69066403--69066707 Score: 477
Period size: 49 Copynumber: 6.4 Consensus size: 49
69066393 CTAATGGCCG
*
69066403 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
69066452 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
69066501 ATGTGAAATGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGA
1 ATGTGAAA-GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
69066551 ATGTGAAAGTGTATATATATGTG---A----TAA-GGCC--TGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
69066590 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
69066639 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
69066688 ATGTGAAAGTGTATATATAT
1 ATGTGAAAGTGTATATATAT
69066708 ATGTGGTAAA
Statistics
Matches: 235, Mismatches: 10, Indels: 22
0.88 0.04 0.08
Matches are distributed among these distances:
39 30 0.13
41 4 0.02
42 4 0.02
46 4 0.02
47 3 0.01
49 143 0.61
50 47 0.20
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:69066526 original size:99 final size:99
Alignment explanation
Indices: 69066414--69066727 Score: 470
Period size: 88 Copynumber: 3.3 Consensus size: 99
69066404 TGTGAAAATG
69066414 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
69066479 GGCCTAATGGCCGATGTGATGAATGTGAAATGTA
66 GGCCTAATGGCCGATGTGATGAATGTGAAATGTA
*
69066513 TATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTG---A
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
*
69066575 ----TAA-GGCC--TGTGATGAATGTGAAA-GTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAATGTA
* *
69066601 TATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAATGTATATATATGTGATAA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
*
69066666 GGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
66 GGCCTAATGGCCGATGTGATGAATGTGAAA-TGTA
* * *
69066701 TATATATATGTGGTAAAGCCGAATGGC
1 TATATATATGTGATAAGGCCTAATGGC
69066728 TAATGTGAAT
Statistics
Matches: 193, Mismatches: 10, Indels: 23
0.85 0.04 0.10
Matches are distributed among these distances:
88 60 0.31
89 16 0.08
91 5 0.03
92 3 0.02
95 3 0.02
96 5 0.03
98 15 0.08
99 60 0.31
100 26 0.13
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31
Consensus pattern (99 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAATGTA
Found at i:69066587 original size:39 final size:39
Alignment explanation
Indices: 69066544--69066621 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
69066534 AATGGCCGAC
69066544 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
69066583 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
69066622 AATGGCTGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.33
Consensus pattern (39 bp):
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
Found at i:69066830 original size:37 final size:36
Alignment explanation
Indices: 69066775--69066861 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
69066765 AACTTGGAAA
69066775 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
69066813 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
69066850 TATGTCCGGGTA
1 TATGTCCGGGTA
69066862 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:69071996 original size:119 final size:121
Alignment explanation
Indices: 69071783--69072046 Score: 383
Period size: 119 Copynumber: 2.2 Consensus size: 121
69071773 TATTCGGATG
* *
69071783 ATAACCGGGCTAAGTCCCGAAGGC-ATTCGTGCTAGTGACCAATTCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCAATTCGTGCGAGTGACCAATACCGGGCTAAGTCCCGAAGGC
69071847 AATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
66 AATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
* * * *
69071903 TTAACCGGGCTCAGTCCCGAAGGCAATT-GTGCGAGTTA-CTATAACCGGGCTAAGT-CCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCAATTCGTGCGAGTGACCAAT-ACCGGGCTAAGTCCCGAAGG
* * * ** *
69071965 CATTTGTGTGAGTTACTTTAACCGGGCTAAGTCTTGAAGGCATTTGTGCGAGTTACT
65 CAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
69072022 ATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCA
69072047 TTTGAGCAAG
Statistics
Matches: 128, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
119 84 0.66
120 41 0.32
121 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (121 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTCGTGCGAGTGACCAATACCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
Found at i:69072064 original size:40 final size:40
Alignment explanation
Indices: 69071783--69072050 Score: 387
Period size: 40 Copynumber: 6.7 Consensus size: 40
69071773 TATTCGGATG
* * * *
69071783 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
69071823 A-ATTCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
69071863 ATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
69071903 TTAACCGGGCTCAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
69071943 ATAACCGGGCTAAGT-CCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* **
69071982 TTAACCGGGCTAAGTCTTGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
69072022 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
69072051 AGCAAGTAGC
Statistics
Matches: 201, Mismatches: 24, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.18
40 163 0.81
41 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:69072080 original size:119 final size:118
Alignment explanation
Indices: 69071783--69072083 Score: 363
Period size: 119 Copynumber: 2.5 Consensus size: 118
69071773 TATTCGGATG
* * * * *
69071783 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACCA-ATTCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ACTATA-T-CGGGCTAAATTCCGAAGGC
69071847 AATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
63 AATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
* * * * * *
69071903 TTAACCGGGCTCAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCT-AAGTCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTAT-ATCGGGCTAAATTCCGAAGGCA
* * * ** *
69071967 TTTGTGTGAGTTACTTTAACCGGGCTAAGTCTTGAAGGCATTTGTGCGAGTTACT
64 ATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
* *
69072022 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATATCTGGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-CTATATCGGGCTAAATTCCGAAGG
69072084 TACTTGGTTT
Statistics
Matches: 152, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
118 8 0.05
119 103 0.68
120 39 0.26
121 1 0.01
122 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (118 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTACTATATCGGGCTAAATTCCGAAGGCAAT
TGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
Found at i:69079145 original size:9 final size:9
Alignment explanation
Indices: 69079133--69079166 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
69079123 TTGATTATTT
69079133 TGAATGAAA
1 TGAATGAAA
69079142 TGAATGAAA
1 TGAATGAAA
69079151 TGAATGAAA
1 TGAATGAAA
*
69079160 TGGATGA
1 TGAATGA
69079167 TTGAATGGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.26, T:0.24
Consensus pattern (9 bp):
TGAATGAAA
Found at i:69088255 original size:40 final size:40
Alignment explanation
Indices: 69088171--69088355 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
69088161 TCGAATGATG
* * *
69088171 TCCGGGCTAAATCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
69088210 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
69088251 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
69088290 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
69088329 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
69088356 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:69088378 original size:79 final size:79
Alignment explanation
Indices: 69088224--69088378 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
69088214 GGACTAAGAT
* **
69088224 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
**
69088289 ATCTGGGTTAAGTC
66 ATCTCAGTTAAGTC
* *
69088303 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
69088366 TATATC-CAGTTAA
63 TAAATCTCAGTTAA
69088379 ATTTCGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.62
80 23 0.35
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCTCAGTTAAGTC
Found at i:69099493 original size:627 final size:626
Alignment explanation
Indices: 69098288--69099538 Score: 1956
Period size: 627 Copynumber: 2.0 Consensus size: 626
69098278 ATGATGACCT
* * * * *
69098288 GTTTGATCAATTGAAAGGAGTGACATGGTTTTCAAAAATAGACTTGAGATCCAGCTACTATTAGT
1 GTTTGATCAATTAAAAGGAATGACATGCTTTTCAAAAATAAACTTGAGATCCAGCTACTATCAGT
* **
69098353 TGCGAGTTAAAGAGTCGGATGTACCTAAAACTGCTTTTAGAATGAGGTATGGCCACTATGAATTT
66 TGCGAGTTAAAGAGTCGGATGTACCTAAAACTACTTTTAGAACAAGGTATGGCCACTATGAATTT
* *
69098418 CTTGTTATGCCATTTGGGTTAACGAATGCACTACTGTGTTTATGGATTTAATGAATCAAATATTT
131 CTTGTTATGCCATTTGGGTTAACGAACGCACTACTGTGTTTATGGATTTAATGAATCAAATATCT
*
69098483 AGGCCATATTTGGACAAGTTTATGGTTGTGTTTATTAATGATATTCTGATTTATTCGAGAAATGA
196 AGGCCATATTTGGACAAGTTTATAGTTGTGTTTATTAATGATATTCTGATTTATTCGAGAAATGA
* *
69098548 GGCAAAGCATACCAAACACTTGAGAACTATTTTGCAGACTTTGAGAGATGAACAGTTGTATGCCA
261 GGCAAAGCATACCAAACACTTGAGAACTATTTTGCAGACTTTGAAAGATAAACAGTTGTATGCCA
* *
69098613 AGTTTAGTAAAAGTGAGTTTTGGCTTCGAGAAGCTGGATTTTTGGGCACATTGTTTCGAGTGATG
326 AGTTTAGTAAAAGTGAGTTTTGGCTTCGAGAAACTGGATTTTTGGGCACATTGTTTAGAGTGATG
* *
69098678 GTATTAGAGTTGACCCGAGTAAGATCTCAGTTATTATTGAATGGAAACCGTCGAGAAATGTTACT
391 GTATTAGAGTTGACCCGAGTAAGATCTCAGCTATTATTGAATGGAAACCGTCGAGAAATGTAACT
69098743 GAGGTTAAAAGCTTTCTAGGCTTGGCTAATTATTACAAAAGGTTTGTTAAAGGATTCTCCATGAT
456 GAGGTTAAAAGCTTTCTAGGCTTGGCTAATTATTACAAAAGGTTTGTTAAAGGATTCTCCATGAT
* **
69098808 TGCTACTCCGATGACGAGGTTGTTACAGAAAGATGTCAAGTTTGAACGGATTGAAAAATGCCAGC
521 TGCTACTCCGATGACGAGGTTGTTACAGAAAGATGTCAAGTTCGAACGGACAGAAAAATGCCAGC
*
69098873 AGAGTTTTGAGAAATTAAAGGCATTGTTGACTGAGGCTCCG
586 AGAGTTTTCAGAAATTAAAGGCATTGTTGACTGAGGCTCCG
* *
69098914 GTTTGATCAATTAAAAGGAATGACATGCTTTTCTAAAATAAACTTGACG-TCCGGCTACTATCAG
1 GTTTGATCAATTAAAAGGAATGACATGCTTTTCAAAAATAAACTTGA-GATCCAGCTACTATCAG
69098978 TTGCGAGTTAAAGAGTCGGATGTACCTAAAACTACTTTTAGAACAAGGTATGGCCACTATGAATT
65 TTGCGAGTTAAAGAGTCGGATGTACCTAAAACTACTTTTAGAACAAGGTATGGCCACTATGAATT
* * **
69099043 TCTTGTTATGCCATTTGGGTTGACGAACGCACCTTCTGTGTTTATGGATTTAATGAATTGAATAT
130 TCTTGTTATGCCATTTGGGTTAACGAACGCA-CTACTGTGTTTATGGATTTAATGAATCAAATAT
* * * * * *
69099108 CTCGGCCATATTTGGACAAGTTTGTAGTTGTGTTTATTGATGATATTTTGATTTATTCGATAGAT
194 CTAGGCCATATTTGGACAAGTTTATAGTTGTGTTTATTAATGATATTCTGATTTATTCGAGAAAT
* * *
69099173 GAGGCAAAGCATGCCGAACACTTGAGAACTATTTTGTAGACTTTGAAAGATAAACAGTTGTATGC
259 GAGGCAAAGCATACCAAACACTTGAGAACTATTTTGCAGACTTTGAAAGATAAACAGTTGTATGC
*
69099238 CAAGTTTAGTAAAAGTGAGTTTTGGCTTCGAGAAATTGGATTTTTGGGCACATTGTTTA-AGGTG
324 CAAGTTTAGTAAAAGTGAGTTTTGGCTTCGAGAAACTGGATTTTTGGGCACATTGTTTAGA-GTG
* **
69099302 ATGGTATTAGTA-TTGACCCGAGTAAGATCTCGGCTATTATTGAATGGAAATTG-CGGAGAAATG
388 ATGGTATTAG-AGTTGACCCGAGTAAGATCTCAGCTATTATTGAATGGAAACCGTC-GAGAAATG
* * * *
69099365 TAACTGAGGTTAGAAGCTTTCTAGGCTTGG-TCAGTTATTACAGACGGTTTGTTAAAGGATTCTC
451 TAACTGAGGTTAAAAGCTTTCTAGGCTTGGCT-AATTATTACAAAAGGTTTGTTAAAGGATTCTC
* * *
69099429 CATGATTGCTACT-CGAATGATGAGGTTGTTATAGAAAGATGTCAAGTTCGAATGGACAGAAAAA
515 CATGATTGCTACTCCG-ATGACGAGGTTGTTACAGAAAGATGTCAAGTTCGAACGGACAGAAAAA
* *
69099493 TGCCAGCAGAGTTTTCAGAAATTAAAGGCATTTTTTACTGAGGCTC
579 TGCCAGCAGAGTTTTCAGAAATTAAAGGCATTGTTGACTGAGGCTC
69099539 TAGTTTTAGT
Statistics
Matches: 569, Mismatches: 49, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
626 151 0.27
627 417 0.73
628 1 0.00
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.33
Consensus pattern (626 bp):
GTTTGATCAATTAAAAGGAATGACATGCTTTTCAAAAATAAACTTGAGATCCAGCTACTATCAGT
TGCGAGTTAAAGAGTCGGATGTACCTAAAACTACTTTTAGAACAAGGTATGGCCACTATGAATTT
CTTGTTATGCCATTTGGGTTAACGAACGCACTACTGTGTTTATGGATTTAATGAATCAAATATCT
AGGCCATATTTGGACAAGTTTATAGTTGTGTTTATTAATGATATTCTGATTTATTCGAGAAATGA
GGCAAAGCATACCAAACACTTGAGAACTATTTTGCAGACTTTGAAAGATAAACAGTTGTATGCCA
AGTTTAGTAAAAGTGAGTTTTGGCTTCGAGAAACTGGATTTTTGGGCACATTGTTTAGAGTGATG
GTATTAGAGTTGACCCGAGTAAGATCTCAGCTATTATTGAATGGAAACCGTCGAGAAATGTAACT
GAGGTTAAAAGCTTTCTAGGCTTGGCTAATTATTACAAAAGGTTTGTTAAAGGATTCTCCATGAT
TGCTACTCCGATGACGAGGTTGTTACAGAAAGATGTCAAGTTCGAACGGACAGAAAAATGCCAGC
AGAGTTTTCAGAAATTAAAGGCATTGTTGACTGAGGCTCCG
Found at i:69111174 original size:40 final size:39
Alignment explanation
Indices: 69111115--69111301 Score: 167
Period size: 40 Copynumber: 4.7 Consensus size: 39
69111105 AACTTGAATG
* * *
69111115 ATATCCGGGCTAAGTCCCGAAGACATTAATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACATT-ATGCTAGTAATT
* * * ***
69111155 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGAC-ATTATGCTAGTAATT
* * *
69111195 ACATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGACA-TTATGCTAGTAATT
* * * *
69111235 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACATT-ATGCTAGTAATT
* * *
69111275 CTATTCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGACATT
69111302 TGTGCAAATC
Statistics
Matches: 117, Mismatches: 27, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
39 3 0.03
40 111 0.95
41 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGACATTATGCTAGTAATT
Found at i:69111294 original size:80 final size:79
Alignment explanation
Indices: 69111117--69111270 Score: 229
Period size: 80 Copynumber: 1.9 Consensus size: 79
69111107 CTTGAATGAT
* * * *
69111117 ATCCGGGCTAAGTCCCGAAGACATTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
*
69111182 TGTGCTAGTGGCTAC
66 TGTGCGAGT-GCTAC
*
69111197 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGC-AT
1 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
69111261 TCGTGCGAGT
66 T-GTGCGAGT
69111271 CATTCTATTC
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
79 3 0.04
80 64 0.96
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCGAGTGCTAC
Found at i:69111302 original size:80 final size:79
Alignment explanation
Indices: 69111117--69111302 Score: 225
Period size: 80 Copynumber: 2.3 Consensus size: 79
69111107 CTTGAATGAT
* * * *
69111117 ATCCGGGCTAAGTCCCGAAGACATTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
*
69111182 TGTGCTAGTGGCTAC
66 TGTGCGAGT-GCTAC
*
69111197 ATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGC-A
1 ATCCGGGCTAAGTCCCGAAGG-CATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
69111260 TTCGTGCGAGT-CATTC
65 TT-GTGCGAGTGC-TAC
* *
69111276 TATTCGGGCTAAGACCCGAAGGCATTT
1 -ATCCGGGCTAAGTCCCGAAGGCATTT
69111303 GTGCAAATCG
Statistics
Matches: 92, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 1 0.01
79 7 0.08
80 81 0.88
81 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCGAGTGCTAC
Found at i:69111329 original size:120 final size:120
Alignment explanation
Indices: 69111115--69111333 Score: 262
Period size: 120 Copynumber: 1.8 Consensus size: 120
69111105 AACTTGAATG
* *
69111115 ATATCCGGGCTAAGTCCCGAAGACATTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTAATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
* * * *
69111180 ATTGTGCTAGTGGCTACATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATT
66 ATTGTGCAAATCGCTACATCCGAGCTAAGTCCCGAGGACATTTATGCTAGTAATT
* ** ** * *
69111235 ATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATTCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTAATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
* * *
69111299 ATTTGTGCAAATCG-TGATATCCGAGTTAAGTCCCG
65 AATTGTGCAAATCGCT-ACATCCGAGCTAAGTCCCG
69111334 TAGGCCTTGG
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
119 2 0.02
120 79 0.98
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (120 bp):
ATATCCGGGCTAAGACCCGAAGACATTAATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCAAATCGCTACATCCGAGCTAAGTCCCGAGGACATTTATGCTAGTAATT
Found at i:69114833 original size:21 final size:20
Alignment explanation
Indices: 69114777--69114833 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
69114767 TAAACTTAAG
**
69114777 ACACGGGCGTGGAGGGTCTA
1 ACACGGGCGTGGAGAATCTA
*
69114797 ACACAGGCGTGGAGAATCTA
1 ACACGGGCGTGGAGAATCTA
69114817 ACACGGGCGTGGGAGAA
1 ACACGGGCGT-GGAGAA
69114834 GCGAACGAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 26 0.81
21 6 0.19
ACGTcount: A:0.28, C:0.19, G:0.40, T:0.12
Consensus pattern (20 bp):
ACACGGGCGTGGAGAATCTA
Found at i:69114918 original size:26 final size:26
Alignment explanation
Indices: 69114882--69114939 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
69114872 TGCACCACAC
* *
69114882 GGCCCGGGTACATAGGTATGTCCAAT
1 GGCCCGGGTACACAGGCATGTCCAAT
*
69114908 GGCCTGGGTACACAGGCATGTCCAAT
1 GGCCCGGGTACACAGGCATGTCCAAT
69114934 GGCCCG
1 GGCCCG
69114940 TGTGCGAACT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.21, C:0.28, G:0.33, T:0.19
Consensus pattern (26 bp):
GGCCCGGGTACACAGGCATGTCCAAT
Found at i:69117090 original size:17 final size:17
Alignment explanation
Indices: 69117069--69117108 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
69117059 AGTCCATTTA
69117069 ATTTTTAAATTATTTTT
1 ATTTTTAAATTATTTTT
* **
69117086 CTTTTTAGTTTATTTTT
1 ATTTTTAAATTATTTTT
69117103 ATTTTT
1 ATTTTT
69117109 GCATTTCTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.75
Consensus pattern (17 bp):
ATTTTTAAATTATTTTT
Found at i:69119592 original size:27 final size:26
Alignment explanation
Indices: 69119536--69119592 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
69119526 CAACCTTAAC
* * *
69119536 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTGTACA
* *
69119562 CCTAGGGGTAAATCTGTAAATTGTCCA
1 CCTAGGGGTAAATCAGT-AATTGTACA
69119589 CCTA
1 CCTA
69119593 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTGTACA
Found at i:69129612 original size:40 final size:40
Alignment explanation
Indices: 69129503--69129685 Score: 273
Period size: 40 Copynumber: 4.6 Consensus size: 40
69129493 TATTCGGATG
* * * *
69129503 ATAACCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
69129543 A-ATTCCGGGCTAAGT-CCGAAGGCAATTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
69129582 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
69129622 TTAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
69129662 ATAACCGGGCTAAGT-CCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCA
69129686 ATTGAGCAAG
Statistics
Matches: 130, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
39 41 0.32
40 89 0.68
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:69129634 original size:79 final size:79
Alignment explanation
Indices: 69129503--69129685 Score: 273
Period size: 79 Copynumber: 2.3 Consensus size: 79
69129493 TATTCGGATG
* *
69129503 ATAACCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACCAATTCCGGGCTAAGT-CCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAA-TCCGGGCTAAGTCCCGAAGGCA
69129567 ATTGTGCGAGTTACT
65 ATTGTGCGAGTTACT
* *
69129582 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTTTAA-CCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGAC--CAATCCGGGCTAAGTCCCGAAGGC
*
69129646 ATTTGTGCGAGTTACT
64 AATTGTGCGAGTTACT
69129662 ATAACCGGGCTAAGT-CCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCA
69129686 ATTGAGCAAG
Statistics
Matches: 96, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
79 56 0.58
80 38 0.40
81 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAATCCGGGCTAAGTCCCGAAGGCAA
TTGTGCGAGTTACT
Found at i:69134316 original size:25 final size:25
Alignment explanation
Indices: 69134262--69134340 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 25
69134252 GGTTATCGAT
* * *
69134262 TTCAGCTCTTATGAGCTTACTGATA
1 TTCAGCTCGTATGAGCTTACCGTTA
* *
69134287 CTCAGCGCGTATGAGCTTACCGTTA
1 TTCAGCTCGTATGAGCTTACCGTTA
* *
69134312 TTCAGCTCAG-AAGAGCTTATCGTTA
1 TTCAGCTC-GTATGAGCTTACCGTTA
69134337 TTCA
1 TTCA
69134341 ACTCAAAGGA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
25 43 0.98
26 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (25 bp):
TTCAGCTCGTATGAGCTTACCGTTA
Found at i:69134345 original size:25 final size:25
Alignment explanation
Indices: 69134299--69134356 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
69134289 CAGCGCGTAT
*
69134299 GAGCTTACCGTTATTCAGCTCAGAA-
1 GAGCTTACCGTTATTCAACTCA-AAG
*
69134324 GAGCTTATCGTTATTCAACTCAAAG
1 GAGCTTACCGTTATTCAACTCAAAG
69134349 GAGCTTAC
1 GAGCTTAC
69134357 TGTTTACTGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 2 0.07
25 27 0.93
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (25 bp):
GAGCTTACCGTTATTCAACTCAAAG
Found at i:69140442 original size:31 final size:31
Alignment explanation
Indices: 69140402--69140511 Score: 177
Period size: 31 Copynumber: 3.5 Consensus size: 31
69140392 CTTGACATAT
*
69140402 ACTGGGCCGAA-TCTTTTCCATAAATCATACC
1 ACTGGGCCGAAGCCTTTT-CATAAATCATACC
*
69140433 ACTAGGCCGAAGCCTTTTCATAAATCATACC
1 ACTGGGCCGAAGCCTTTTCATAAATCATACC
*
69140464 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATACC
69140495 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
69140512 ACTATAAACA
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
31 69 0.93
32 5 0.07
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.27
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATACC
Found at i:69140750 original size:23 final size:24
Alignment explanation
Indices: 69140710--69140777 Score: 86
Period size: 23 Copynumber: 2.8 Consensus size: 24
69140700 CTCTTTTAAT
*
69140710 AACTGGGGCAAAGACC-TTTCTGATA
1 AACTGGGGC-AAGCCCTTTTC-GATA
69140735 AACTGGGGCAA-CCCTTTTCGATA
1 AACTGGGGCAAGCCCTTTTCGATA
69140758 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCA-AGCCCTTTT
69140778 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
23 16 0.41
24 7 0.18
25 16 0.41
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (24 bp):
AACTGGGGCAAGCCCTTTTCGATA
Found at i:69140753 original size:24 final size:25
Alignment explanation
Indices: 69140710--69140777 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
69140700 CTCTTTTAAT
* *
69140710 AACTGGGGCAAAGACC-TTTCTGATA
1 AACTGGGGCAGAGCCCTTTTC-GATA
69140735 AACTGGGGCA-A-CCCTTTTCGATA
1 AACTGGGGCAGAGCCCTTTTCGATA
69140758 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAGAGCCCTTTT
69140778 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
23 16 0.41
24 6 0.15
25 17 0.44
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAGAGCCCTTTTCGATA
Found at i:69141617 original size:27 final size:27
Alignment explanation
Indices: 69141587--69141648 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
69141577 GGGCATATTC
69141587 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
69141614 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
69141641 GTCTTTTT
1 GTCATTTT
69141649 TCCTATTCGA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:69141735 original size:27 final size:27
Alignment explanation
Indices: 69141705--69141790 Score: 77
Period size: 27 Copynumber: 3.1 Consensus size: 27
69141695 GTAAATCTAC
69141705 AAACTAAAGGTATTTCAGTAATTTTGT
1 AAACTAAAGGTATTTCAGTAATTTTGT
* *
69141732 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACTAAAGGTATTTC-AGTAATTTTGT
* * *
69141758 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAACT-AAAGGTATTTCAGTAATTTTGT
69141788 AAA
1 AAA
69141791 TTAGGGGTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
26 1 0.02
27 21 0.45
28 7 0.15
29 17 0.36
30 1 0.02
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (27 bp):
AAACTAAAGGTATTTCAGTAATTTTGT
Found at i:69141855 original size:54 final size:54
Alignment explanation
Indices: 69141793--69141951 Score: 196
Period size: 54 Copynumber: 2.9 Consensus size: 54
69141783 TTTGTAAATT
*
69141793 AGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTTGGTAATTTCACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTCACAAACC
** * *
69141847 AGTTGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTCACAAACC
* ** **
69141901 AGGGGTATTTTGGTAATTCTATCTTA-TAGGGGTATTTCAGTAATTTCACAA
1 AGGGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTTGGTAATTTCACAA
69141952 TCGAGGGTAA
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
54 86 0.96
55 4 0.04
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.42
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTCACAAACC
Done.