Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr13 124041150 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 124041150 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Warning! 335 characters in sequence are not A, C, G, or T File 224 of 410 Found at i:68785551 original size:94 final size:94 Alignment explanation
Indices: 68785131--68785530 Score: 656 Period size: 94 Copynumber: 4.3 Consensus size: 94 68785121 TTTCACACTA * * * * 68785131 GCCATTCGGCTTTACCACATATATGCATTTTCATATTCACCACATTGGCCATTCGGCGTTATCAC 1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC * 68785196 ACATATGCATGCTCACATCCATCACATTG 66 ACATATGCATGCTCACATTCATCACATTG * * * * * * 68785225 GCCATTCGGCCTCATCACATATATGCATGCTCACATTTATCACATTGGCCATTCGGCCTCATCAC 1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC * * * 68785290 ATATATGCATGTTCACATTCATCACATAG 66 ACATATGCATGCTCACATTCATCACATTG 68785319 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC 1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC 68785384 ACATATGCATGCTCACATTCATCACATTG 66 ACATATGCATGCTCACATTCATCACATTG * * 68785413 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGGCCATTCGCCCTTATCAC 1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC 68785478 ACATATGCATGCTCACATTCATCACATTG 66 ACATATGCATGCTCACATTCATCACATTG 68785507 GCCATTCGGCCTTATCACATATAT 1 GCCATTCGGCCTTATCACATATAT 68785531 ACACATTCAC Statistics Matches: 281, Mismatches: 25, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 94 281 1.00 ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32 Consensus pattern (94 bp): GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC ACATATGCATGCTCACATTCATCACATTG Found at i:68789354 original size:25 final size:25 Alignment explanation
Indices: 68789317--68789433 Score: 130 Period size: 25 Copynumber: 4.7 Consensus size: 25 68789307 GACAAACCAT * 68789317 AGCTCGT-ACGAGCTTACCGATTTAC 1 AGCTCGTGA-GAGCATACCGATTTAC * 68789342 AGCTCGTGAGAGCATACTGATTTAC 1 AGCTCGTGAGAGCATACCGATTTAC * * * 68789367 AACTCGTGAGAGCATACTGATTTAT 1 AGCTCGTGAGAGCATACCGATTTAC * * 68789392 AGCTCGAGAGAGCATACCGATTCAC 1 AGCTCGTGAGAGCATACCGATTTAC * 68789417 AGGTCGT-ATGAGCATAC 1 AGCTCGTGA-GAGCATAC 68789434 ATGTACATAA Statistics Matches: 79, Mismatches: 11, Indels: 4 0.84 0.12 0.04 Matches are distributed among these distances: 24 1 0.01 25 77 0.97 26 1 0.01 ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26 Consensus pattern (25 bp): AGCTCGTGAGAGCATACCGATTTAC Found at i:68792791 original size:12 final size:13 Alignment explanation
Indices: 68792753--68792791 Score: 53 Period size: 14 Copynumber: 3.0 Consensus size: 13 68792743 AAATATTTGA 68792753 CTTGTTCTTAATT 1 CTTGTTCTTAATT * 68792766 ATGTGTTCTTAATT 1 CT-TGTTCTTAATT 68792780 CTTGTT-TTAATT 1 CTTGTTCTTAATT 68792792 TTCCAGGATG Statistics Matches: 23, Mismatches: 2, Indels: 3 0.82 0.07 0.11 Matches are distributed among these distances: 12 6 0.26 13 5 0.22 14 12 0.52 ACGTcount: A:0.18, C:0.10, G:0.10, T:0.62 Consensus pattern (13 bp): CTTGTTCTTAATT Found at i:68799542 original size:39 final size:39 Alignment explanation
Indices: 68799488--68799778 Score: 432 Period size: 39 Copynumber: 7.5 Consensus size: 39 68799478 AATGGAGAAC * 68799488 TATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTGT 1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT 68799527 TATATCCGGGCTAAGTCCCGAAGGCATTCGT--TGGTGT 1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT * * 68799564 TATATCCGAGCTAAG-CCCGAAGGCATTCGTACTGGTGT 1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT 68799602 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT 1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT 68799641 TATATCCGGGCTAA-TCCCGAAGGCATTCGTGCTGGTGT 1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT * 68799679 TATATCTGGGCTAAG-CCTCGAAGGCATTCGTGCTGGTGT 1 TATATCCGGGCTAAGTCC-CGAAGGCATTCGTGCTGGTGT * * * 68799718 TATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTAT 1 TATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTGT * 68799757 TATATTCGGGCTTAAAGTCCCG 1 TATATCCGGGC-T-AAGTCCCG 68799779 CATCCTTTGT Statistics Matches: 234, Mismatches: 10, Indels: 15 0.90 0.04 0.06 Matches are distributed among these distances: 36 15 0.06 37 20 0.09 38 59 0.25 39 119 0.51 40 19 0.08 41 2 0.01 ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30 Consensus pattern (39 bp): TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT Found at i:68799676 original size:77 final size:78 Alignment explanation
Indices: 68799488--68799778 Score: 432 Period size: 77 Copynumber: 3.8 Consensus size: 78 68799478 AATGGAGAAC * 68799488 TATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA 1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA 68799553 TTCGT--TGGTGT 66 TTCGTGCTGGTGT * * 68799564 TATATCCGAGCTAAG-CCCGAAGGCATTCGTACTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA 1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA 68799628 TTCGTGCTGGTGT 66 TTCGTGCTGGTGT * 68799641 TATATCCGGGCTAA-TCCCGAAGGCATTCGTGCTGGTGTTATATCTGGGCTAAG-CCTCGAAGGC 1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCC-CGAAGGC 68799704 ATTCGTGCTGGTGT 65 ATTCGTGCTGGTGT * * * * 68799718 TATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTATTATATTCGGGCTTAAAGTCCCG 1 TATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC-T-AAGTCCCG 68799779 CATCCTTTGT Statistics Matches: 195, Mismatches: 11, Indels: 14 0.89 0.05 0.06 Matches are distributed among these distances: 75 52 0.27 76 16 0.08 77 88 0.45 78 22 0.11 79 10 0.05 80 5 0.03 81 2 0.01 ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30 Consensus pattern (78 bp): TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA TTCGTGCTGGTGT Found at i:68804608 original size:2 final size:2 Alignment explanation
Indices: 68804603--68804629 Score: 54 Period size: 2 Copynumber: 13.5 Consensus size: 2 68804593 ATTTAGGTTT 68804603 TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA T 68804630 GTGTGTGTGT Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 25 1.00 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (2 bp): TA Found at i:68805727 original size:38 final size:38 Alignment explanation
Indices: 68805658--68805900 Score: 364 Period size: 38 Copynumber: 6.3 Consensus size: 38 68805648 TAATGGAGAA 68805658 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG 1 TTATATCCGGGCTAAGT-CCGAAGGCATTCGTGCTGGTG 68805697 TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG 1 TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG * * 68805735 TTATATCTGGGCTAAGCCCGAAGGCATTCGTGCTGGTG 1 TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG 68805773 TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG 1 TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG * * 68805811 TTATATCCGGGCTAAGCCCCGAAGGCATTC-TGCCGGTG 1 TTATATCCGGGCTAAG-TCCGAAGGCATTCGTGCTGGTG * * * 68805849 TTATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA 1 TTATATCCGGGCT-AAGT-CCGAAGGCATTCGTGCTGGTG * 68805888 TTATATTCGGGCT 1 TTATATCCGGGCT 68805901 TAAAGTCCTG Statistics Matches: 188, Mismatches: 12, Indels: 8 0.90 0.06 0.04 Matches are distributed among these distances: 38 131 0.70 39 57 0.30 ACGTcount: A:0.18, C:0.22, G:0.30, T:0.30 Consensus pattern (38 bp): TTATATCCGGGCTAAGTCCGAAGGCATTCGTGCTGGTG Found at i:68807412 original size:40 final size:40 Alignment explanation
Indices: 68807324--68807466 Score: 218 Period size: 40 Copynumber: 3.6 Consensus size: 40 68807314 TATTCGGATG * 68807324 ATATCCGGGCTAAGTCCCGAAGGCATTTGTTGTGAGTTACT 1 ATATCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACT 68807365 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT * * 68807405 ATATCCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCT 1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT * 68807445 ATATCC-GGCTAAATCCCGAAGG 1 ATATCCGGGCTAAGTCCCGAAGG 68807467 TACTTGGTTT Statistics Matches: 97, Mismatches: 4, Indels: 4 0.92 0.04 0.04 Matches are distributed among these distances: 39 17 0.18 40 51 0.53 41 29 0.30 ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25 Consensus pattern (40 bp): ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT Found at i:68815075 original size:40 final size:40 Alignment explanation
Indices: 68815020--68815161 Score: 216 Period size: 40 Copynumber: 3.6 Consensus size: 40 68815010 TATTCGGATG * 68815020 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT 1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 68815060 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT * * 68815100 ATATCCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCT 1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT * * 68815140 ATATCC-GGCTAAATCCCAAAGG 1 ATATCCGGGCTAAGTCCCGAAGG 68815162 TACTTGGTTT Statistics Matches: 96, Mismatches: 5, Indels: 3 0.92 0.05 0.03 Matches are distributed among these distances: 39 16 0.17 40 80 0.83 ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25 Consensus pattern (40 bp): ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT Found at i:68817787 original size:17 final size:19 Alignment explanation
Indices: 68817758--68817794 Score: 60 Period size: 18 Copynumber: 2.1 Consensus size: 19 68817748 TTAGCATTCT 68817758 TACCAAGAGTTCAT-CTCA 1 TACCAAGAGTTCATACTCA 68817776 TACCAA-AGTTCATACTCA 1 TACCAAGAGTTCATACTCA 68817794 T 1 T 68817795 GGGTTTTACA Statistics Matches: 18, Mismatches: 0, Indels: 2 0.90 0.00 0.10 Matches are distributed among these distances: 17 7 0.39 18 11 0.61 ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30 Consensus pattern (19 bp): TACCAAGAGTTCATACTCA Found at i:68821629 original size:18 final size:18 Alignment explanation
Indices: 68821606--68821660 Score: 110 Period size: 18 Copynumber: 3.1 Consensus size: 18 68821596 AAATTAAAAA 68821606 TATAAAGAATATAGAAAC 1 TATAAAGAATATAGAAAC 68821624 TATAAAGAATATAGAAAC 1 TATAAAGAATATAGAAAC 68821642 TATAAAGAATATAGAAAC 1 TATAAAGAATATAGAAAC 68821660 T 1 T 68821661 TGGAGTGATT Statistics Matches: 37, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 18 37 1.00 ACGTcount: A:0.60, C:0.05, G:0.11, T:0.24 Consensus pattern (18 bp): TATAAAGAATATAGAAAC Found at i:68824852 original size:21 final size:21 Alignment explanation
Indices: 68824826--68824865 Score: 64 Period size: 21 Copynumber: 1.9 Consensus size: 21 68824816 TTGTTCGACC 68824826 ATGATTCGA-TAGTGATTTGAA 1 ATGATTCGACTA-TGATTTGAA 68824847 ATGATTCGACTATGATTTG 1 ATGATTCGACTATGATTTG 68824866 GTATTGGAAA Statistics Matches: 18, Mismatches: 0, Indels: 2 0.90 0.00 0.10 Matches are distributed among these distances: 21 16 0.89 22 2 0.11 ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40 Consensus pattern (21 bp): ATGATTCGACTATGATTTGAA Found at i:68826696 original size:40 final size:41 Alignment explanation
Indices: 68826626--68826720 Score: 106 Period size: 40 Copynumber: 2.4 Consensus size: 41 68826616 ATCTTGGTAT * 68826626 CGCACACTTAGTG-CATCATATAGCCGAAGCTA-TTCCAAC 1 CGCACACTTAGTGCCATCATATAGCCAAAGCTATTTCCAAC * * * * 68826665 ACGCACACTTAGTGCCAT-TTGTATCCAAAGCTATTTCGAAC 1 -CGCACACTTAGTGCCATCATATAGCCAAAGCTATTTCCAAC * 68826706 CGCACACCTAGTGCC 1 CGCACACTTAGTGCC 68826721 GAACATAGTC Statistics Matches: 47, Mismatches: 6, Indels: 4 0.82 0.11 0.07 Matches are distributed among these distances: 40 38 0.81 41 9 0.19 ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24 Consensus pattern (41 bp): CGCACACTTAGTGCCATCATATAGCCAAAGCTATTTCCAAC Found at i:68834949 original size:93 final size:93 Alignment explanation
Indices: 68834841--68835011 Score: 315 Period size: 93 Copynumber: 1.8 Consensus size: 93 68834831 GCCCCTAAGT * * 68834841 GAACTTGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA 68834906 CGAGTTCGGATGCCTAGTTACATCTCAC 66 CGAGTTCGGATGCCTAGTTACATCTCAC * 68834934 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA 68834999 CGAGTTCGGATGC 66 CGAGTTCGGATGC 68835012 TCAACCATCC Statistics Matches: 75, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 93 75 1.00 ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22 Consensus pattern (93 bp): GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA CGAGTTCGGATGCCTAGTTACATCTCAC Found at i:68835008 original size:46 final size:46 Alignment explanation
Indices: 68834836--68835008 Score: 219 Period size: 46 Copynumber: 3.7 Consensus size: 46 68834826 AACCCGCCCC * * * 68834836 TAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA * 68834882 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C- 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA * * 68834930 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA 68834975 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 68835009 TGCTCAACCA Statistics Matches: 109, Mismatches: 9, Indels: 18 0.80 0.07 0.13 Matches are distributed among these distances: 42 2 0.02 43 4 0.04 44 2 0.02 45 2 0.02 46 60 0.55 47 29 0.27 48 2 0.02 49 2 0.02 50 4 0.04 51 2 0.02 ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22 Consensus pattern (46 bp): TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA Found at i:68838212 original size:27 final size:28 Alignment explanation
Indices: 68838156--68838225 Score: 115 Period size: 27 Copynumber: 2.5 Consensus size: 28 68838146 AAATTTGTAC 68838156 AGCACTAAGTGTGCGAGTTTGATCATAT 1 AGCACTAAGTGTGCGAGTTTGATCATAT * 68838184 AGCACTAAGTGTGCGAG-TTGATTATAT 1 AGCACTAAGTGTGCGAGTTTGATCATAT * 68838211 AGCACTGAGTGTGCG 1 AGCACTAAGTGTGCG 68838226 GACTCACTAT Statistics Matches: 40, Mismatches: 2, Indels: 1 0.93 0.05 0.02 Matches are distributed among these distances: 27 23 0.57 28 17 0.43 ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30 Consensus pattern (28 bp): AGCACTAAGTGTGCGAGTTTGATCATAT Found at i:68838236 original size:27 final size:27 Alignment explanation
Indices: 68838156--68838237 Score: 69 Period size: 27 Copynumber: 3.0 Consensus size: 27 68838146 AAATTTGTAC * * 68838156 AGCACTAAGTGTGCGAGTTTGA-TCATAT 1 AGCACTAAGTGTGCGAG-CTCACT-ATAT * * * 68838184 AGCACTAAGTGTGCGAGTTGATTATAT 1 AGCACTAAGTGTGCGAGCTCACTATAT * 68838211 AGCACTGAGTGTGCG-GACTCACTATAT 1 AGCACTAAGTGTGCGAG-CTCACTATAT 68838238 GCTTTTGAAT Statistics Matches: 48, Mismatches: 4, Indels: 5 0.84 0.07 0.09 Matches are distributed among these distances: 26 1 0.02 27 29 0.60 28 18 0.38 ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30 Consensus pattern (27 bp): AGCACTAAGTGTGCGAGCTCACTATAT Found at i:68842334 original size:15 final size:15 Alignment explanation
Indices: 68842316--68842350 Score: 70 Period size: 15 Copynumber: 2.3 Consensus size: 15 68842306 TTAATATATT 68842316 GATTTGTAATTTATA 1 GATTTGTAATTTATA 68842331 GATTTGTAATTTATA 1 GATTTGTAATTTATA 68842346 GATTT 1 GATTT 68842351 ATAGTAGAGT Statistics Matches: 20, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 15 20 1.00 ACGTcount: A:0.31, C:0.00, G:0.14, T:0.54 Consensus pattern (15 bp): GATTTGTAATTTATA Found at i:68844014 original size:13 final size:13 Alignment explanation
Indices: 68843996--68844020 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 68843986 GGTTAACTTG 68843996 TATATATATGATA 1 TATATATATGATA 68844009 TATATATATGAT 1 TATATATATGAT 68844021 TTGAAATTGA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48 Consensus pattern (13 bp): TATATATATGATA Found at i:68851624 original size:27 final size:27 Alignment explanation
Indices: 68851604--68851758 Score: 163 Period size: 27 Copynumber: 5.7 Consensus size: 27 68851594 TACTGAAATG * 68851604 CCCTCGATTTATAGAATTACTGTTTTA 1 CCCTCGATTTATAGAATTACTGATTTA * * 68851631 CCCTCGCTTTATAGAATTAC-CATTTTA 1 CCCTCGATTTATAGAATTACTGA-TTTA * 68851658 CCCTCGATTCT-TAGAATTACTGTTTTA 1 CCCTCGATT-TATAGAATTACTGATTTA * * 68851685 CCCTCGATTTATAGAATTACCGTTTTA 1 CCCTCGATTTATAGAATTACTGATTTA * * 68851712 CCCTCGATTTACAGAATTA-TCGTTTTA 1 CCCTCGATTTATAGAATTACT-GATTTA * * * 68851739 CCCTTGATTTACAAAATTAC 1 CCCTCGATTTATAGAATTAC 68851759 CAAAATACCC Statistics Matches: 111, Mismatches: 11, Indels: 11 0.83 0.08 0.08 Matches are distributed among these distances: 26 1 0.01 27 109 0.98 28 1 0.01 ACGTcount: A:0.26, C:0.23, G:0.10, T:0.41 Consensus pattern (27 bp): CCCTCGATTTATAGAATTACTGATTTA Found at i:68851663 original size:54 final size:54 Alignment explanation
Indices: 68851604--68851774 Score: 229 Period size: 54 Copynumber: 3.2 Consensus size: 54 68851594 TACTGAAATG * 68851604 CCCTCGATTTATAGAATTACTGTTTTACCCTCGCTTTATAGAATTACCATTTTA 1 CCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTTTA * 68851658 CCCTCGATTCT-TAGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTA 1 CCCTCGATT-TATAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTTTA * * * * *** 68851712 CCCTCGATTTACAGAATTA-TCGTTTTACCCTTGATTTACAAAATTACCAAAATA 1 CCCTCGATTTATAGAATTACT-GTTTTACCCTCGATTTATAGAATTACCATTTTA 68851766 CCCTCGATT 1 CCCTCGATT 68851775 AGGAAAATTA Statistics Matches: 104, Mismatches: 10, Indels: 6 0.87 0.08 0.05 Matches are distributed among these distances: 53 2 0.02 54 101 0.97 55 1 0.01 ACGTcount: A:0.27, C:0.23, G:0.09, T:0.40 Consensus pattern (54 bp): CCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTTTA Found at i:68851757 original size:81 final size:81 Alignment explanation
Indices: 68851604--68851758 Score: 222 Period size: 81 Copynumber: 1.9 Consensus size: 81 68851594 TACTGAAATG * * * 68851604 CCCTCGATTTATAGAATTACTGTTTTACCCTCGCTTTATAGAATTACCATTTTACCCTCGATTCT 1 CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTCT * * 68851669 TAGAATTACTGTTTTA 66 CAAAATTACTGTTTTA * * * 68851685 CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTTGATT-T 1 CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTCT 68851749 ACAAAATTAC 66 -CAAAATTAC 68851759 CAAAATACCC Statistics Matches: 65, Mismatches: 8, Indels: 2 0.87 0.11 0.03 Matches are distributed among these distances: 80 1 0.02 81 64 0.98 ACGTcount: A:0.26, C:0.23, G:0.10, T:0.41 Consensus pattern (81 bp): CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTCT CAAAATTACTGTTTTA Found at i:68851767 original size:27 final size:27 Alignment explanation
Indices: 68851737--68851935 Score: 138 Period size: 27 Copynumber: 7.3 Consensus size: 27 68851727 ATTATCGTTT 68851737 TACCCTTGATTTACAAAATTACCAAAA 1 TACCCTTGATTTACAAAATTACCAAAA * * 68851764 TACCCTCGA-TTAGGAAAATTACCAAAA 1 TACCCTTGATTTA-CAAAATTACCAAAA * ** 68851791 TACCCCT-AGTTTGTAAAATTACCAAAA 1 TACCCTTGA-TTTACAAAATTACCAAAA * 68851818 TACCCCTGATTTACAAAATTA-CAGAAA 1 TACCCTTGATTTACAAAATTACCA-AAA * * 68851845 TACCCTTAACTTT-CTAAAAATTA-TAGAAA 1 TACCCTTGA-TTTAC--AAAATTACCA-AAA ** * ** 68851874 TACTATTGGTTTACAAAATTACTGAAA 1 TACCCTTGATTTACAAAATTACCAAAA * ** * * 68851901 TACCCTTGGTTTGTAGATTTACCAAAA 1 TACCCTTGATTTACAAAATTACCAAAA 68851928 TACCCTTG 1 TACCCTTG 68851936 TAGGATGAAA Statistics Matches: 138, Mismatches: 24, Indels: 20 0.76 0.13 0.11 Matches are distributed among these distances: 26 6 0.04 27 104 0.75 28 10 0.07 29 18 0.13 ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31 Consensus pattern (27 bp): TACCCTTGATTTACAAAATTACCAAAA Found at i:68851768 original size:81 final size:81 Alignment explanation
Indices: 68851599--68851774 Score: 210 Period size: 81 Copynumber: 2.2 Consensus size: 81 68851589 CCAACTACTG * * * * 68851599 AAATGCCCTCGATTTATAGAATTACTGTTTTACCCTCGCTTTATAGAATTACCATTTTACCCTCG 1 AAATACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCG * * ** 68851664 ATTCTTAGAATTACTG 66 ATTCTCAAAATTACCA *** * * * 68851680 TTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTTG 1 AAATACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCG 68851745 ATT-TACAAAATTACCA 66 ATTCT-CAAAATTACCA 68851761 AAATACCCTCGATT 1 AAATACCCTCGATT 68851775 AGGAAAATTA Statistics Matches: 77, Mismatches: 17, Indels: 2 0.80 0.18 0.02 Matches are distributed among these distances: 80 1 0.01 81 76 0.99 ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39 Consensus pattern (81 bp): AAATACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCG ATTCTCAAAATTACCA Found at i:68852030 original size:27 final size:27 Alignment explanation
Indices: 68851953--68852030 Score: 88 Period size: 27 Copynumber: 2.9 Consensus size: 27 68851943 AAATGACTAA * * 68851953 AATACCCCT-AATAGGTAAAAAGACCGT 1 AATACCCCTGTAT-GGTAAAATGACCGT * * 68851980 AA-AGCCCCTGTAGGGTAAAGTGACCGT 1 AATA-CCCCTGTATGGTAAAATGACCGT 68852007 AATACCCCTGTATGGTAAAATGAC 1 AATACCCCTGTATGGTAAAATGAC 68852031 GAATATGCCC Statistics Matches: 42, Mismatches: 6, Indels: 6 0.78 0.11 0.11 Matches are distributed among these distances: 26 1 0.02 27 39 0.93 28 2 0.05 ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21 Consensus pattern (27 bp): AATACCCCTGTATGGTAAAATGACCGT Found at i:68852895 original size:26 final size:25 Alignment explanation
Indices: 68852842--68852902 Score: 88 Period size: 25 Copynumber: 2.4 Consensus size: 25 68852832 AGGAAGTGCA * * 68852842 AAAAGGGCTCTGCCCCAATTTACCG 1 AAAAGGGCTTTGCCCCAATTTACAG 68852867 AAAAGGGCTTTGCCCCAATTTATCAG 1 AAAAGGGCTTTGCCCCAATTTA-CAG 68852893 -AAAGGGCTTT 1 AAAAGGGCTTT 68852903 TCCCTAGTTA Statistics Matches: 33, Mismatches: 2, Indels: 2 0.89 0.05 0.05 Matches are distributed among these distances: 25 31 0.94 26 2 0.06 ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25 Consensus pattern (25 bp): AAAAGGGCTTTGCCCCAATTTACAG Found at i:68853118 original size:42 final size:42 Alignment explanation
Indices: 68853059--68853150 Score: 130 Period size: 42 Copynumber: 2.2 Consensus size: 42 68853049 TAGTCTCCCC * * ** * * 68853059 AAATGGGCTTGTATACATTCATTGGTATTTCATGTGTTATTG 1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG 68853101 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG 1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG 68853143 AAATGGGC 1 AAATGGGC 68853151 CTATGGGCCA Statistics Matches: 44, Mismatches: 6, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 42 44 1.00 ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37 Consensus pattern (42 bp): AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG Found at i:68853209 original size:31 final size:31 Alignment explanation
Indices: 68853174--68853252 Score: 158 Period size: 31 Copynumber: 2.5 Consensus size: 31 68853164 CGTTTACAGT 68853174 AAAGGCTTCGGCCCAGTGATATGATTTATGA 1 AAAGGCTTCGGCCCAGTGATATGATTTATGA 68853205 AAAGGCTTCGGCCCAGTGATATGATTTATGA 1 AAAGGCTTCGGCCCAGTGATATGATTTATGA 68853236 AAAGGCTTCGGCCCAGT 1 AAAGGCTTCGGCCCAGT 68853253 AACCATTAAA Statistics Matches: 48, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 31 48 1.00 ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27 Consensus pattern (31 bp): AAAGGCTTCGGCCCAGTGATATGATTTATGA Found at i:68856318 original size:68 final size:66 Alignment explanation
Indices: 68856246--68856417 Score: 170 Period size: 67 Copynumber: 2.6 Consensus size: 66 68856236 CATCATGTGT * * * * 68856246 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA 1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA 68856309 TGTAG 62 TGTAG ** * * 68856314 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT 1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT 68856379 AG 65 AG * * * * 68856381 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG 1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG 68856418 GGTGGTACTG Statistics Matches: 89, Mismatches: 12, Indels: 8 0.82 0.11 0.07 Matches are distributed among these distances: 64 24 0.27 65 3 0.03 66 17 0.19 67 32 0.36 68 13 0.15 ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22 Consensus pattern (66 bp): ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA G Found at i:68856351 original size:64 final size:64 Alignment explanation
Indices: 68856270--68856453 Score: 203 Period size: 67 Copynumber: 2.8 Consensus size: 64 68856260 AGACATTATG * * * 68856270 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT 1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA * * * * * 68856334 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT 1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT 68856399 AA 63 AA * * * 68856401 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC 1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC 68856454 CGAACTATAT Statistics Matches: 99, Mismatches: 16, Indels: 11 0.79 0.13 0.09 Matches are distributed among these distances: 62 1 0.01 63 19 0.19 64 25 0.25 66 21 0.21 67 33 0.33 ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23 Consensus pattern (64 bp): ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA Found at i:68859301 original size:27 final size:28 Alignment explanation
Indices: 68859245--68859314 Score: 124 Period size: 27 Copynumber: 2.5 Consensus size: 28 68859235 AAAATTGTAC 68859245 AGCACTAAGTGTGCGAGTTTGATCATAT 1 AGCACTAAGTGTGCGAGTTTGATCATAT * 68859273 AGCACTAAGTGTGCGAG-TTGATTATAT 1 AGCACTAAGTGTGCGAGTTTGATCATAT 68859300 AGCACTAAGTGTGCG 1 AGCACTAAGTGTGCG 68859315 GACTCACTAT Statistics Matches: 41, Mismatches: 1, Indels: 1 0.95 0.02 0.02 Matches are distributed among these distances: 27 24 0.59 28 17 0.41 ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30 Consensus pattern (28 bp): AGCACTAAGTGTGCGAGTTTGATCATAT Found at i:68859325 original size:27 final size:27 Alignment explanation
Indices: 68859245--68859326 Score: 78 Period size: 27 Copynumber: 3.0 Consensus size: 27 68859235 AAAATTGTAC * * 68859245 AGCACTAAGTGTGCGAGTTTGA-TCATAT 1 AGCACTAAGTGTGCGAG-CTCACT-ATAT * * * 68859273 AGCACTAAGTGTGCGAGTTGATTATAT 1 AGCACTAAGTGTGCGAGCTCACTATAT 68859300 AGCACTAAGTGTGCG-GACTCACTATAT 1 AGCACTAAGTGTGCGAG-CTCACTATAT 68859327 GCTTTTGAAT Statistics Matches: 49, Mismatches: 3, Indels: 5 0.86 0.05 0.09 Matches are distributed among these distances: 26 1 0.02 27 30 0.61 28 18 0.37 ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30 Consensus pattern (27 bp): AGCACTAAGTGTGCGAGCTCACTATAT Found at i:68867200 original size:27 final size:28 Alignment explanation
Indices: 68867144--68867213 Score: 115 Period size: 27 Copynumber: 2.5 Consensus size: 28 68867134 AAATTTGTAC 68867144 AGCACTAAGTGTGCGAGTTTGATCATAT 1 AGCACTAAGTGTGCGAGTTTGATCATAT * 68867172 AGCACTAAGTGTGCGAG-TTGATTATAT 1 AGCACTAAGTGTGCGAGTTTGATCATAT * 68867199 AGCACTGAGTGTGCG 1 AGCACTAAGTGTGCG 68867214 GACTCACTAT Statistics Matches: 40, Mismatches: 2, Indels: 1 0.93 0.05 0.02 Matches are distributed among these distances: 27 23 0.57 28 17 0.43 ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30 Consensus pattern (28 bp): AGCACTAAGTGTGCGAGTTTGATCATAT Found at i:68867224 original size:27 final size:27 Alignment explanation
Indices: 68867144--68867225 Score: 69 Period size: 27 Copynumber: 3.0 Consensus size: 27 68867134 AAATTTGTAC * * 68867144 AGCACTAAGTGTGCGAGTTTGA-TCATAT 1 AGCACTAAGTGTGCGAG-CTCACT-ATAT * * * 68867172 AGCACTAAGTGTGCGAGTTGATTATAT 1 AGCACTAAGTGTGCGAGCTCACTATAT * 68867199 AGCACTGAGTGTGCG-GACTCACTATAT 1 AGCACTAAGTGTGCGAG-CTCACTATAT 68867226 GCTTTTGAAT Statistics Matches: 48, Mismatches: 4, Indels: 5 0.84 0.07 0.09 Matches are distributed among these distances: 26 1 0.02 27 29 0.60 28 18 0.38 ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30 Consensus pattern (27 bp): AGCACTAAGTGTGCGAGCTCACTATAT Found at i:68871943 original size:30 final size:30 Alignment explanation
Indices: 68871871--68871972 Score: 107 Period size: 30 Copynumber: 3.4 Consensus size: 30 68871861 TGGCCAAGAA * * 68871871 ACACGCCCGTGTGTCACACGCAGC-CTAGCC 1 ACACGCCCGTGTGTCACACACAGCTC-AGAC * ** 68871901 ACATGCTTGTGTGTCACACACAGCTCAGAC 1 ACACGCCCGTGTGTCACACACAGCTCAGAC * * 68871931 ACACGCCCGTGTGTCACACACAGTTGAGAC 1 ACACGCCCGTGTGTCACACACAGCTCAGAC * * 68871961 ACAAGCTCGTGT 1 ACACGCCCGTGT 68871973 CCCTGGCCGT Statistics Matches: 59, Mismatches: 12, Indels: 2 0.81 0.16 0.03 Matches are distributed among these distances: 30 58 0.98 31 1 0.02 ACGTcount: A:0.25, C:0.34, G:0.23, T:0.19 Consensus pattern (30 bp): ACACGCCCGTGTGTCACACACAGCTCAGAC Found at i:68873109 original size:20 final size:21 Alignment explanation
Indices: 68873086--68873129 Score: 56 Period size: 20 Copynumber: 2.2 Consensus size: 21 68873076 ACCCTTTCAA * * 68873086 ATTTTC-TTATTTTCATTTGC 1 ATTTTCATTACTTTCAGTTGC 68873106 A-TTTCATTACTTTCAGTTGC 1 ATTTTCATTACTTTCAGTTGC 68873126 ATTT 1 ATTT 68873130 ACTTTCTTTA Statistics Matches: 20, Mismatches: 2, Indels: 3 0.80 0.08 0.12 Matches are distributed among these distances: 19 4 0.20 20 14 0.70 21 2 0.10 ACGTcount: A:0.18, C:0.16, G:0.07, T:0.59 Consensus pattern (21 bp): ATTTTCATTACTTTCAGTTGC Found at i:68875718 original size:28 final size:27 Alignment explanation
Indices: 68875655--68875724 Score: 113 Period size: 27 Copynumber: 2.6 Consensus size: 27 68875645 ATAGTGAGTC * 68875655 CGCACACTCAGTGCTATATAATCAACT 1 CGCACACTTAGTGCTATATAATCAACT * 68875682 CGCACACTTAGTGCTATATGATCAAACT 1 CGCACACTTAGTGCTATATAATC-AACT 68875710 CGCACACTTAGTGCT 1 CGCACACTTAGTGCT 68875725 GTACAAATTT Statistics Matches: 40, Mismatches: 2, Indels: 1 0.93 0.05 0.02 Matches are distributed among these distances: 27 21 0.52 28 19 0.47 ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27 Consensus pattern (27 bp): CGCACACTTAGTGCTATATAATCAACT Found at i:68883653 original size:28 final size:27 Alignment explanation
Indices: 68883590--68883659 Score: 122 Period size: 27 Copynumber: 2.6 Consensus size: 27 68883580 ATAGTGAGTC 68883590 CGCACACTTAGTGCTATATAATCAACT 1 CGCACACTTAGTGCTATATAATCAACT * 68883617 CGCACACTTAGTGCTATATGATCAAACT 1 CGCACACTTAGTGCTATATAATC-AACT 68883645 CGCACACTTAGTGCT 1 CGCACACTTAGTGCT 68883660 GTACAAATTT Statistics Matches: 41, Mismatches: 1, Indels: 1 0.95 0.02 0.02 Matches are distributed among these distances: 27 22 0.54 28 19 0.46 ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29 Consensus pattern (27 bp): CGCACACTTAGTGCTATATAATCAACT Found at i:68888950 original size:40 final size:40 Alignment explanation
Indices: 68888895--68889144 Score: 385 Period size: 40 Copynumber: 6.2 Consensus size: 40 68888885 AACATTGGAA 68888895 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG 1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG 68888935 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG 1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG 68888975 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG 1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG 68889015 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG 1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG * * * * 68889055 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC 1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG * * * * * * 68889094 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG 1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG * 68889135 CTATATCCGG 1 ATATATCCGG 68889145 TTAAATCCCG Statistics Matches: 191, Mismatches: 17, Indels: 4 0.90 0.08 0.02 Matches are distributed among these distances: 39 2 0.01 40 189 0.99 ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22 Consensus pattern (40 bp): ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG Found at i:68893710 original size:29 final size:29 Alignment explanation
Indices: 68893677--68893808 Score: 156 Period size: 29 Copynumber: 4.6 Consensus size: 29 68893667 GTGACGAGAT 68893677 TGGCACTAAGTGTGCGTGCTGGAAATATA 1 TGGCACTAAGTGTGCGTGCTGGAAATATA 68893706 TGGCACTAAGTGTGCGTGCTGGAAATATA 1 TGGCACTAAGTGTGCGTGCTGGAAATATA * * * 68893735 TGGCACTAAATGTGCATGCTGGAAAAATA 1 TGGCACTAAGTGTGCGTGCTGGAAATATA * ** * * *** 68893764 CGGCACTGGGTGTGCGAGCTCGAAGGGTA 1 TGGCACTAAGTGTGCGTGCTGGAAATATA * 68893793 TGGCACTATGTGTGCG 1 TGGCACTAAGTGTGCG 68893809 GGCTTAAATT Statistics Matches: 87, Mismatches: 16, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 29 87 1.00 ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25 Consensus pattern (29 bp): TGGCACTAAGTGTGCGTGCTGGAAATATA Found at i:68895807 original size:42 final size:42 Alignment explanation
Indices: 68895760--68895843 Score: 150 Period size: 42 Copynumber: 2.0 Consensus size: 42 68895750 ACACTTAGTG 68895760 CCTCATATATTCAATCCGCATTTCACATACTTCAACTTTACA 1 CCTCATATATTCAATCCGCATTTCACATACTTCAACTTTACA * * 68895802 CCTCATATATTCAGTCCGCATTTCTCATACTTCAACTTTACA 1 CCTCATATATTCAATCCGCATTTCACATACTTCAACTTTACA 68895844 ATCACATTTC Statistics Matches: 40, Mismatches: 2, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 42 40 1.00 ACGTcount: A:0.29, C:0.31, G:0.04, T:0.37 Consensus pattern (42 bp): CCTCATATATTCAATCCGCATTTCACATACTTCAACTTTACA Found at i:68900881 original size:70 final size:70 Alignment explanation
Indices: 68900798--68900945 Score: 251 Period size: 70 Copynumber: 2.1 Consensus size: 70 68900788 TAGTTTATTA * * * 68900798 CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTG 1 CTAATTAATATGCTACTGTAATACTATAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG 68900863 CTTAG 66 CTTAG 68900868 CTAATTAATATGCTACTGTAATACTATAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG 1 CTAATTAATATGCTACTGTAATACTATAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG * 68900933 TTTAG 66 CTTAG * 68900938 CGAATTAA 1 CTAATTAA 68900946 AATGTGTTGT Statistics Matches: 73, Mismatches: 5, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 70 73 1.00 ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36 Consensus pattern (70 bp): CTAATTAATATGCTACTGTAATACTATAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG CTTAG Found at i:68901376 original size:44 final size:44 Alignment explanation
Indices: 68901321--68901470 Score: 159 Period size: 44 Copynumber: 3.5 Consensus size: 44 68901311 TATGTGATAT * * 68901321 CATGTACGACCACGTCTGGGACATTGTCATCGACT-TTTGTTTTA 1 CATGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGTTTTA * * 68901365 CATGTAAGACCATGTCTGGGACATTGGCATCG-TATCTGATTTT- 1 CATGTAAGACCACGTCTGGGACATTGGCATCGATATTTG-TTTTA * * * * 68901408 -GTGTAAGACC-CTGTCTGGGACAGTGGCATCGATGTTTG-ATTA 1 CATGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGTTTTA 68901450 CATGTAAGACCACGTCTGGGA 1 CATGTAAGACCACGTCTGGGA 68901471 TGTTGGTATT Statistics Matches: 88, Mismatches: 11, Indels: 15 0.77 0.10 0.13 Matches are distributed among these distances: 41 2 0.02 42 28 0.32 43 24 0.27 44 34 0.39 ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32 Consensus pattern (44 bp): CATGTAAGACCACGTCTGGGACATTGGCATCGATATTTGTTTTA Found at i:68904194 original size:24 final size:24 Alignment explanation
Indices: 68904167--68904229 Score: 126 Period size: 24 Copynumber: 2.6 Consensus size: 24 68904157 CTTATTATGT 68904167 TCGCACACATAGTGCCATAGTAAA 1 TCGCACACATAGTGCCATAGTAAA 68904191 TCGCACACATAGTGCCATAGTAAA 1 TCGCACACATAGTGCCATAGTAAA 68904215 TCGCACACATAGTGC 1 TCGCACACATAGTGC 68904230 ATTTGAGATT Statistics Matches: 39, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 24 39 1.00 ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21 Consensus pattern (24 bp): TCGCACACATAGTGCCATAGTAAA Found at i:68913928 original size:14 final size:15 Alignment explanation
Indices: 68913899--68913942 Score: 54 Period size: 14 Copynumber: 2.9 Consensus size: 15 68913889 GTTATAATTG 68913899 TATGAGCATATGAGT 1 TATGAGCATATGAGT * 68913914 TATGA-CATTTGAGT 1 TATGAGCATATGAGT 68913928 TATGATGCTATATGA 1 TATGA-GC-ATATGA 68913943 AAATTTCAAT Statistics Matches: 24, Mismatches: 2, Indels: 4 0.80 0.07 0.13 Matches are distributed among these distances: 14 13 0.54 15 5 0.21 16 1 0.04 17 5 0.21 ACGTcount: A:0.32, C:0.07, G:0.23, T:0.39 Consensus pattern (15 bp): TATGAGCATATGAGT Found at i:68923087 original size:29 final size:29 Alignment explanation
Indices: 68923054--68923243 Score: 265 Period size: 29 Copynumber: 6.6 Consensus size: 29 68923044 GTGACAAGAT 68923054 TGGCACTAAGTGTGCGTGCTGGAAATATA 1 TGGCACTAAGTGTGCGTGCTGGAAATATA 68923083 TGGCACTAAGTGTGCGTGCTGGAAATATA 1 TGGCACTAAGTGTGCGTGCTGGAAATATA 68923112 TGGCACTAAGTGTGCGTGCTGGAAATATA 1 TGGCACTAAGTGTGCGTGCTGGAAATATA * 68923141 TGGCACTAAGTGTGCATGCTGGAAATATA 1 TGGCACTAAGTGTGCGTGCTGGAAATATA * * *** 68923170 TGGCACTAAGTGTGCGAGCTCGAAGGGTA 1 TGGCACTAAGTGTGCGTGCTGGAAATATA * * * ** 68923199 TGGCACTATGTGTGCGGGCT-TAAATCGCA 1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA 68923228 TGGCACTAAGTGTGCG 1 TGGCACTAAGTGTGCG 68923244 AAATCGAGTA Statistics Matches: 146, Mismatches: 14, Indels: 2 0.90 0.09 0.01 Matches are distributed among these distances: 28 2 0.01 29 144 0.99 ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26 Consensus pattern (29 bp): TGGCACTAAGTGTGCGTGCTGGAAATATA Found at i:68934634 original size:70 final size:69 Alignment explanation
Indices: 68934534--68934691 Score: 203 Period size: 70 Copynumber: 2.3 Consensus size: 69 68934524 TAGTTTATTA * * 68934534 CTAATTAATATGTTGCTGTAATACTATAAATTA-TAGGCTATCCAAATTAGGA-AAAATTTATGG 1 CTAATTAATATG-TGTTGTAATACTATAAATTACT-GGCTATCCAAATTAGGACAAAA-TCATGG 68934597 TGCTTAG 63 TGCTTAG * * * 68934604 CTAATTAATATGCTGTTGTAGTACTGTAAATTACTGGCTGTCCAAATTAGGACAAAATCATGGTG 1 CTAATTAATATG-TGTTGTAATACTATAAATTACTGGCTATCCAAATTAGGACAAAATCATGGTG * 68934669 TTTAG 65 CTTAG * 68934674 CTAATTAAAATGTGTTGT 1 CTAATTAATATGTGTTGT 68934692 TATAGATCAA Statistics Matches: 78, Mismatches: 8, Indels: 5 0.86 0.09 0.05 Matches are distributed among these distances: 69 6 0.08 70 67 0.86 71 5 0.06 ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37 Consensus pattern (69 bp): CTAATTAATATGTGTTGTAATACTATAAATTACTGGCTATCCAAATTAGGACAAAATCATGGTGC TTAG Found at i:68939669 original size:13 final size:13 Alignment explanation
Indices: 68939651--68939677 Score: 54 Period size: 13 Copynumber: 2.1 Consensus size: 13 68939641 CCTTATTACA 68939651 TTAAAACACAACC 1 TTAAAACACAACC 68939664 TTAAAACACAACC 1 TTAAAACACAACC 68939677 T 1 T 68939678 AAGCCATTGA Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 14 1.00 ACGTcount: A:0.52, C:0.30, G:0.00, T:0.19 Consensus pattern (13 bp): TTAAAACACAACC Found at i:68940462 original size:47 final size:47 Alignment explanation
Indices: 68940390--68940484 Score: 163 Period size: 47 Copynumber: 2.0 Consensus size: 47 68940380 CAGTGGATAT 68940390 TTATTCTTGACTGTAACCTTATTGAGCTGATGGTAAACAATACACAA 1 TTATTCTTGACTGTAACCTTATTGAGCTGATGGTAAACAATACACAA * * * 68940437 TTATTCTTGGCTGTAACCTTGTTGAGCTGATGGTAATCAATACACAA 1 TTATTCTTGACTGTAACCTTATTGAGCTGATGGTAAACAATACACAA 68940484 T 1 T 68940485 CTCATCGATC Statistics Matches: 45, Mismatches: 3, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 47 45 1.00 ACGTcount: A:0.31, C:0.17, G:0.17, T:0.36 Consensus pattern (47 bp): TTATTCTTGACTGTAACCTTATTGAGCTGATGGTAAACAATACACAA Found at i:68946635 original size:15 final size:16 Alignment explanation
Indices: 68946615--68946644 Score: 53 Period size: 16 Copynumber: 1.9 Consensus size: 16 68946605 AAACTATTTT 68946615 ATTACA-AATTTCACC 1 ATTACATAATTTCACC 68946630 ATTACATAATTTCAC 1 ATTACATAATTTCAC 68946645 TTACTCCATT Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 15 6 0.43 16 8 0.57 ACGTcount: A:0.40, C:0.23, G:0.00, T:0.37 Consensus pattern (16 bp): ATTACATAATTTCACC Found at i:68946912 original size:49 final size:50 Alignment explanation
Indices: 68946854--68947084 Score: 150 Period size: 49 Copynumber: 4.6 Consensus size: 50 68946844 ATCTGGTACG 68946854 CATAGTAGCCTGCACTTAGTACTACACATGCGA-CTAACAAT-TCAATACA 1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-AATATCAATACA * * * *** * ** * * * 68946903 CGTAGTAGCCTTCACTCAGTACTACACACATGA-TTGAAGTTGTTAAGTACC 1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCT-AAAATATCAA-TACA * * * *** * 68946954 CATAGTAGCCTGCAATTAGTACTACACAT-CGATCT-AACTATTTGGTAAA 1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAAAATA-TCAATACA * * * 68947003 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAATCATCTTAA-ACA 1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAAAAT-ATC--AATACA * 68947055 CATAGTAGCCTGCACATAGTACTACACATG 1 CATAGTAGCCTGCACTTAGTACTACACATG 68947085 TGTTCTCACA Statistics Matches: 134, Mismatches: 38, Indels: 17 0.71 0.20 0.09 Matches are distributed among these distances: 49 59 0.44 50 13 0.10 51 32 0.24 52 30 0.22 ACGTcount: A:0.34, C:0.25, G:0.15, T:0.27 Consensus pattern (50 bp): CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAAAATATCAATACA Found at i:68947027 original size:100 final size:100 Alignment explanation
Indices: 68946849--68947031 Score: 269 Period size: 100 Copynumber: 1.8 Consensus size: 100 68946839 AAGCTATCTG * * * 68946849 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTAACAATTCAATACACGTAGTAGCCT 1 GTACCCATAGTAGCCTGCAATTAGTACTACACATGCGACTAACAATTCAATAAACGTAGTAGCCT * 68946914 TCACTCAGTACTACACACATGATTGAAGTTGTTAA 66 GCACTCAGTACTACACACATGATTGAAGTTGTTAA * *** 68946949 GTACCCATAGTAGCCTGCAATTAGTACTACACAT-CGATCTAACTATTTGGTAAACGTAGTAGCC 1 GTACCCATAGTAGCCTGCAATTAGTACTACACATGCGA-CTAACAATTCAATAAACGTAGTAGCC * 68947013 TGCACTTAGTACTACACAC 65 TGCACTCAGTACTACACAC 68947032 GTGACCTAAA Statistics Matches: 73, Mismatches: 9, Indels: 2 0.87 0.11 0.02 Matches are distributed among these distances: 99 3 0.04 100 70 0.96 ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27 Consensus pattern (100 bp): GTACCCATAGTAGCCTGCAATTAGTACTACACATGCGACTAACAATTCAATAAACGTAGTAGCCT GCACTCAGTACTACACACATGATTGAAGTTGTTAA Found at i:68949833 original size:40 final size:40 Alignment explanation
Indices: 68949774--68950034 Score: 400 Period size: 40 Copynumber: 6.5 Consensus size: 40 68949764 CATTTGAATG * * 68949774 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGTGAGTTGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT * 68949814 ATATCCGGGCTAAGACCCGAGGGCATTTGTGCGAGTTGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT 68949854 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT 68949894 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT * 68949934 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT * * * * * * * 68949974 ATGTCCAGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT 68950014 ATATCC-GGCTAA-ATCCCGAAG 1 ATATCCGGGCTAAGA-CCCGAAG 68950035 AAACTTGGGT Statistics Matches: 205, Mismatches: 15, Indels: 3 0.92 0.07 0.01 Matches are distributed among these distances: 38 1 0.00 39 12 0.06 40 192 0.94 ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26 Consensus pattern (40 bp): ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT Found at i:68953367 original size:15 final size:15 Alignment explanation
Indices: 68953347--68953377 Score: 62 Period size: 15 Copynumber: 2.1 Consensus size: 15 68953337 ACAATATCAG 68953347 AATAAAAGACACAAA 1 AATAAAAGACACAAA 68953362 AATAAAAGACACAAA 1 AATAAAAGACACAAA 68953377 A 1 A 68953378 CAAAGCTCAT Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 15 16 1.00 ACGTcount: A:0.74, C:0.13, G:0.06, T:0.06 Consensus pattern (15 bp): AATAAAAGACACAAA Found at i:68963140 original size:23 final size:23 Alignment explanation
Indices: 68963088--68963217 Score: 127 Period size: 23 Copynumber: 5.7 Consensus size: 23 68963078 CAAAGTGCCA * * * 68963088 CACTGTAATATACCCGAAGCTAT 1 CACTGTAATGTAGCCGAAGCTAC * * * 68963111 CATTGTAACGTAGCTGAAGCTAC 1 CACTGTAATGTAGCCGAAGCTAC * * 68963134 CACTGTATTGTAGCCAAAGCTAC 1 CACTGTAATGTAGCCGAAGCTAC * * 68963157 CACTTTATTGTAGCCGAAGCTAC 1 CACTGTAATGTAGCCGAAGCTAC * 68963180 CACTG-AGATGTAGCCAAAGCTAC 1 CACTGTA-ATGTAGCCGAAGCTAC * * 68963203 CACTATATTGTAGCC 1 CACTGTAATGTAGCC 68963218 TATAGATTCC Statistics Matches: 87, Mismatches: 18, Indels: 4 0.80 0.17 0.04 Matches are distributed among these distances: 22 1 0.01 23 85 0.98 24 1 0.01 ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26 Consensus pattern (23 bp): CACTGTAATGTAGCCGAAGCTAC Found at i:68963212 original size:46 final size:46 Alignment explanation
Indices: 68963120--68963217 Score: 153 Period size: 46 Copynumber: 2.1 Consensus size: 46 68963110 TCATTGTAAC * * * 68963120 GTAGCTGAAGCTACCACTGTATTGTAGCCAAAGCTACCACTTTATT 1 GTAGCCGAAGCTACCACTGTAATGTAGCCAAAGCTACCACTATATT 68963166 GTAGCCGAAGCTACCACTG-AGATGTAGCCAAAGCTACCACTATATT 1 GTAGCCGAAGCTACCACTGTA-ATGTAGCCAAAGCTACCACTATATT 68963212 GTAGCC 1 GTAGCC 68963218 TATAGATTCC Statistics Matches: 48, Mismatches: 3, Indels: 2 0.91 0.06 0.04 Matches are distributed among these distances: 45 1 0.02 46 47 0.98 ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26 Consensus pattern (46 bp): GTAGCCGAAGCTACCACTGTAATGTAGCCAAAGCTACCACTATATT Found at i:68963748 original size:29 final size:29 Alignment explanation
Indices: 68963687--68963748 Score: 72 Period size: 29 Copynumber: 2.1 Consensus size: 29 68963677 CAAATTTTGG * * 68963687 AAAACTTACAATTTTACCCCGAACTTTTC 1 AAAAATTACAATTTTACCCCGAACTTGTC * * 68963716 AAAAATTACACTTTTACCCCTAAGCTTGT- 1 AAAAATTACAATTTTACCCCGAA-CTTGTC 68963745 AAAA 1 AAAA 68963749 TAATTTTATT Statistics Matches: 28, Mismatches: 4, Indels: 2 0.82 0.12 0.06 Matches are distributed among these distances: 29 24 0.86 30 4 0.14 ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32 Consensus pattern (29 bp): AAAAATTACAATTTTACCCCGAACTTGTC Found at i:68966470 original size:101 final size:100 Alignment explanation
Indices: 68966290--68966476 Score: 284 Period size: 101 Copynumber: 1.9 Consensus size: 100 68966280 AAGCTATCTA * * * * 68966290 GTACGCATAGTAGCCTGTAGTTAGTACTACACATACGACCAACAATCCGGTACATGTAGTAGCCT 1 GTACGCATAGTAGCCTGCACTTAGTACTACACATACAACCAACAATCCGGTACACGTAGTAGCCT 68966355 ACACTTAGTACTACACACGTGATTGAAGTTGTCGG 66 ACACTTAGTACTACACACGTGATTGAAGTTGTCGG * * * * 68966390 GTACGCATGGTAGCCTGCACTTAGTACTACACATGCAACCTAACTATCTGGTACACGTAGTAGCC 1 GTACGCATAGTAGCCTGCACTTAGTACTACACATACAACC-AACAATCCGGTACACGTAGTAGCC * 68966455 TGCACTTAGTACTACACACGTG 65 TACACTTAGTACTACACACGTG 68966477 TCCTAAAACC Statistics Matches: 77, Mismatches: 9, Indels: 1 0.89 0.10 0.01 Matches are distributed among these distances: 100 35 0.45 101 42 0.55 ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26 Consensus pattern (100 bp): GTACGCATAGTAGCCTGCACTTAGTACTACACATACAACCAACAATCCGGTACACGTAGTAGCCT ACACTTAGTACTACACACGTGATTGAAGTTGTCGG Found at i:68966482 original size:50 final size:50 Alignment explanation
Indices: 68966283--68966524 Score: 164 Period size: 50 Copynumber: 4.8 Consensus size: 50 68966273 GTAACCGAAG * * * * ** 68966283 CTATCTAGTACGCATAGTAGCCTGTAGTTAGTACTACACATACGACC-AA 1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA * * ** * * * 68966332 CAATCCGGTACATGTAGTAGCCTACACTTAGTACTACACACGTGA-TTGAA 1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCT-AA * * * * * * * 68966382 GTTGTCGGGTACGCATGGTAGCCTGCACTTAGTACTACACATGCAACCTAA 1 -CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA * * * 68966433 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGTCCTAAAA 1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCT--AA * *** * * * 68966485 CCATCTTAAACACATAGTAGCCTCCACATAATACTACACA 1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA 68966525 TGTGTTTTCA Statistics Matches: 143, Mismatches: 44, Indels: 9 0.73 0.22 0.05 Matches are distributed among these distances: 49 33 0.23 50 40 0.28 51 35 0.24 52 35 0.24 ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26 Consensus pattern (50 bp): CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA Found at i:68979779 original size:27 final size:26 Alignment explanation
Indices: 68979731--68979790 Score: 75 Period size: 27 Copynumber: 2.3 Consensus size: 26 68979721 GCGAAGCTGC * 68979731 CAGATATTGTGACGAAGTCACCAGATA 1 CAGATATTGTGACGAAGCCACCAGA-A * * * 68979758 CAGATATTGTGGCTAGGCCACCAGAA 1 CAGATATTGTGACGAAGCCACCAGAA 68979784 CAGATAT 1 CAGATAT 68979791 ATATATATGC Statistics Matches: 29, Mismatches: 4, Indels: 1 0.85 0.12 0.03 Matches are distributed among these distances: 26 8 0.28 27 21 0.72 ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22 Consensus pattern (26 bp): CAGATATTGTGACGAAGCCACCAGAA Found at i:68987236 original size:27 final size:26 Alignment explanation
Indices: 68987188--68987245 Score: 62 Period size: 27 Copynumber: 2.2 Consensus size: 26 68987178 GCGAAGCTGG * 68987188 CAGATATTGTGACGAAGTCACCAAATA 1 CAGATATTGTGACGAAGCCACCAAA-A * * * * 68987215 CAGATATTGTGGCTAGGCCACCAGAA 1 CAGATATTGTGACGAAGCCACCAAAA 68987241 CAGAT 1 CAGAT 68987246 CTAAATATGT Statistics Matches: 26, Mismatches: 5, Indels: 1 0.81 0.16 0.03 Matches are distributed among these distances: 26 6 0.23 27 20 0.77 ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21 Consensus pattern (26 bp): CAGATATTGTGACGAAGCCACCAAAA Found at i:68987294 original size:71 final size:67 Alignment explanation
Indices: 68987215--68987356 Score: 185 Period size: 67 Copynumber: 2.1 Consensus size: 67 68987205 TCACCAAATA * * * 68987215 CAGATATTGTGGCTAGGCCACCAGAACAGATCTAAATATGTGGCGAAGCCACCAGATTGCAGCGA 1 CAGATATTGTGACAAAGCCACCAGAACAGA--T--ATATGTGGCGAAGCCACCAGATTGCAGCGA * 68987280 GGCTGC 62 GGCTAC * * * 68987286 CAGATATTGTGACAAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGTAGCGAGGCT 1 CAGATATTGTGACAAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT 68987351 AC 66 AC 68987353 CAGA 1 CAGA 68987357 ACGCTTCCTC Statistics Matches: 64, Mismatches: 7, Indels: 4 0.85 0.09 0.05 Matches are distributed among these distances: 67 37 0.58 69 1 0.02 71 26 0.41 ACGTcount: A:0.32, C:0.23, G:0.27, T:0.18 Consensus pattern (67 bp): CAGATATTGTGACAAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT AC Found at i:68990059 original size:28 final size:29 Alignment explanation
Indices: 68990027--68990125 Score: 114 Period size: 28 Copynumber: 3.5 Consensus size: 29 68990017 ATAATAAGCC * 68990027 CGCACACTTAGTGCTTA-ATAGTTGAACT 1 CGCACACTTAGTGCTTACATAATTGAACT * ** 68990055 CGCACACTTAGTGC-TATATAATCAAACT 1 CGCACACTTAGTGCTTACATAATTGAACT * * 68990083 CGCACACTTAGTGCTATACA-ATTTGAACC 1 CGCACACTTAGTGCT-TACATAATTGAACT 68990112 CGCACACTTAGTGC 1 CGCACACTTAGTGC 68990126 CAATTCATGA Statistics Matches: 60, Mismatches: 8, Indels: 5 0.82 0.11 0.07 Matches are distributed among these distances: 27 2 0.03 28 36 0.60 29 19 0.32 30 3 0.05 ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28 Consensus pattern (29 bp): CGCACACTTAGTGCTTACATAATTGAACT Found at i:68995827 original size:20 final size:20 Alignment explanation
Indices: 68995794--68995848 Score: 71 Period size: 20 Copynumber: 2.9 Consensus size: 20 68995784 ATACGTGGGA 68995794 TATGATAT--ACATGAT-TG 1 TATGATATGCACATGATATG * 68995811 ATATGTTATGCACATGATATG 1 -TATGATATGCACATGATATG 68995832 TATGATATGCACATGAT 1 TATGATATGCACATGAT 68995849 GAATTCATAA Statistics Matches: 32, Mismatches: 2, Indels: 4 0.84 0.05 0.11 Matches are distributed among these distances: 18 7 0.22 20 23 0.72 21 2 0.06 ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38 Consensus pattern (20 bp): TATGATATGCACATGATATG Found at i:68995976 original size:52 final size:51 Alignment explanation
Indices: 68995898--68996010 Score: 208 Period size: 52 Copynumber: 2.2 Consensus size: 51 68995888 GAGAAAGTGC * 68995898 AAAAGGGCTTATGCCCGAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG 68995950 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG 68996001 AAAAGGGCTT 1 AAAAGGGCTT 68996011 TACCCTAGTT Statistics Matches: 60, Mismatches: 1, Indels: 1 0.97 0.02 0.02 Matches are distributed among these distances: 51 25 0.42 52 35 0.58 ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27 Consensus pattern (51 bp): AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG Found at i:68996020 original size:25 final size:26 Alignment explanation
Indices: 68995898--68996010 Score: 174 Period size: 26 Copynumber: 4.4 Consensus size: 26 68995888 GAGAAAGTGC * ** 68995898 AAAAGGGCTTATGCCCGAGTTTATTG 1 AAAAGGGCTTATGCCCCAGTTTACCG 68995924 AAAAGGGCTTATGCCCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTACCG ** 68995950 AAAAGGGCTTATGCCCCAGTTTATTG 1 AAAAGGGCTTATGCCCCAGTTTACCG 68995976 AAAAGGGCTT-TGCCCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTACCG 68996001 AAAAGGGCTT 1 AAAAGGGCTT 68996011 TACCCTAGTT Statistics Matches: 80, Mismatches: 7, Indels: 1 0.91 0.08 0.01 Matches are distributed among these distances: 25 23 0.29 26 57 0.71 ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27 Consensus pattern (26 bp): AAAAGGGCTTATGCCCCAGTTTACCG Found at i:68999045 original size:37 final size:37 Alignment explanation
Indices: 68998995--68999128 Score: 241 Period size: 37 Copynumber: 3.6 Consensus size: 37 68998985 TTATTACGAA 68998995 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG 1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG * 68999032 GTCTTACCCGGACATAATCTCCACACGTAGTCATCCG 1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG * * 68999069 GTCTTACCCGGACGTAATCTCCACATGTAGTCATCGG 1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG 68999106 GTCTTACCCGGACATAATCTCCA 1 GTCTTACCCGGACATAATCTCCA 68999129 AGTTTCATGT Statistics Matches: 92, Mismatches: 5, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 37 92 1.00 ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25 Consensus pattern (37 bp): GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG Found at i:68999281 original size:48 final size:48 Alignment explanation
Indices: 68999162--68999935 Score: 1197 Period size: 48 Copynumber: 16.0 Consensus size: 48 68999152 TGTTACAACA * * * * 68999162 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT * * * 68999210 TTCACATTCGCCATTCGCCATTCGGCTTTACGACATATACATATCTCATATATAT 1 TTCACATT----A---GCCATTCGGCTTTACCACATATACATATCACACATATAT * 68999265 TTCACATTAGCCATTCGGCTTTACCACATCTACATATCACACATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT * * * 68999313 TTCACAATAGCCATTCGGCTTTACCACATATACATATCTCATATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT 68999361 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT * * * 68999409 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAAAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT * * * 68999457 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT * * * 68999505 TTCACATTAGCCATTCGGCTTTACCACATCTACATATCTCATATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT 68999553 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT 68999601 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT 68999649 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT * * * * 68999697 TTCACATTAGCCATTCGGCTTTACGACATATACATATCTCATACATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT * * 68999745 TTCACATTCGCCATTCGACTTTACCACATATACATATCACACATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT * * * * 68999793 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATACATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT * * 68999841 TTCACATTCGCCATTCGGCCTTACCACATATACATATCACACATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT 68999889 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATA 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATA 68999936 GATATTTATC Statistics Matches: 675, Mismatches: 44, Indels: 14 0.92 0.06 0.02 Matches are distributed among these distances: 48 629 0.93 51 1 0.00 52 1 0.00 55 44 0.07 ACGTcount: A:0.32, C:0.27, G:0.06, T:0.34 Consensus pattern (48 bp): TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT Found at i:69009455 original size:29 final size:29 Alignment explanation
Indices: 69009422--69009524 Score: 143 Period size: 29 Copynumber: 3.6 Consensus size: 29 69009412 CCTCCGAACT ** * * * 69009422 CGCACACCCAGTGCCGTATTTTTCCAGCT 1 CGCACACTTAGTGCCATATATTTCCAGCA * * 69009451 TGCACACTTAGTGCCAAATATTTCCAGCA 1 CGCACACTTAGTGCCATATATTTCCAGCA 69009480 CGCACACTTAGTGCCATATATTTCCAGCA 1 CGCACACTTAGTGCCATATATTTCCAGCA 69009509 CGCACACTTAGTGCCA 1 CGCACACTTAGTGCCA 69009525 ATCTCGTCAC Statistics Matches: 65, Mismatches: 9, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 29 65 1.00 ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26 Consensus pattern (29 bp): CGCACACTTAGTGCCATATATTTCCAGCA Found at i:69017489 original size:29 final size:29 Alignment explanation
Indices: 69017456--69017558 Score: 143 Period size: 29 Copynumber: 3.6 Consensus size: 29 69017446 CCTCCGAACT ** * * * 69017456 CGCACACCCAGTGCCGTATTTTTCCAGCT 1 CGCACACTTAGTGCCATATATTTCCAGCA * * 69017485 TGCACACTTAGTGCCAAATATTTCCAGCA 1 CGCACACTTAGTGCCATATATTTCCAGCA 69017514 CGCACACTTAGTGCCATATATTTCCAGCA 1 CGCACACTTAGTGCCATATATTTCCAGCA 69017543 CGCACACTTAGTGCCA 1 CGCACACTTAGTGCCA 69017559 ATCTCGTCAC Statistics Matches: 65, Mismatches: 9, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 29 65 1.00 ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26 Consensus pattern (29 bp): CGCACACTTAGTGCCATATATTTCCAGCA Found at i:69019264 original size:20 final size:20 Alignment explanation
Indices: 69019231--69019285 Score: 71 Period size: 20 Copynumber: 2.9 Consensus size: 20 69019221 TCACATGGGA 69019231 TATGATAT--ACATGAT-TG 1 TATGATATGCACATGATATG * 69019248 ATATGTTATGCACATGATATG 1 -TATGATATGCACATGATATG 69019269 TATGATATGCACATGAT 1 TATGATATGCACATGAT 69019286 GAATTCATAA Statistics Matches: 32, Mismatches: 2, Indels: 4 0.84 0.05 0.11 Matches are distributed among these distances: 18 7 0.22 20 23 0.72 21 2 0.06 ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38 Consensus pattern (20 bp): TATGATATGCACATGATATG Found at i:69019413 original size:52 final size:51 Alignment explanation
Indices: 69019335--69019447 Score: 208 Period size: 52 Copynumber: 2.2 Consensus size: 51 69019325 GAGGAAGTCC * 69019335 AAAAGGGCTTATGCCCGAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG 69019387 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG 69019438 AAAAGGGCTT 1 AAAAGGGCTT 69019448 TACCCTAGTT Statistics Matches: 60, Mismatches: 1, Indels: 1 0.97 0.02 0.02 Matches are distributed among these distances: 51 25 0.42 52 35 0.58 ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27 Consensus pattern (51 bp): AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG Found at i:69019457 original size:25 final size:26 Alignment explanation
Indices: 69019335--69019447 Score: 174 Period size: 26 Copynumber: 4.4 Consensus size: 26 69019325 GAGGAAGTCC * ** 69019335 AAAAGGGCTTATGCCCGAGTTTATTG 1 AAAAGGGCTTATGCCCCAGTTTACCG 69019361 AAAAGGGCTTATGCCCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTACCG ** 69019387 AAAAGGGCTTATGCCCCAGTTTATTG 1 AAAAGGGCTTATGCCCCAGTTTACCG 69019413 AAAAGGGCTT-TGCCCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTACCG 69019438 AAAAGGGCTT 1 AAAAGGGCTT 69019448 TACCCTAGTT Statistics Matches: 80, Mismatches: 7, Indels: 1 0.91 0.08 0.01 Matches are distributed among these distances: 25 23 0.29 26 57 0.71 ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27 Consensus pattern (26 bp): AAAAGGGCTTATGCCCCAGTTTACCG Found at i:69020474 original size:43 final size:42 Alignment explanation
Indices: 69020427--69020536 Score: 109 Period size: 42 Copynumber: 2.6 Consensus size: 42 69020417 ACAATGCCAA 69020427 GTCCCAGATGTGGTCTTACATGTAATCAAATATAT-ATGCC-ACT 1 GTCCCAGATGTGGTCTTACATGTAAT-AAA-ATATGATGCCGA-T * * * * 69020470 GTCCCAAATAG-GGTTTTACAAGAAATAAAATATGATGCCGAT 1 GTCCCAGAT-GTGGTCTTACATGTAATAAAATATGATGCCGAT ** 69020512 GTCCCAGACATGGTCTTACATGTAA 1 GTCCCAGATGTGGTCTTACATGTAA 69020537 ATCATAAGTC Statistics Matches: 53, Mismatches: 10, Indels: 9 0.74 0.14 0.12 Matches are distributed among these distances: 41 4 0.08 42 27 0.51 43 21 0.40 44 1 0.02 ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29 Consensus pattern (42 bp): GTCCCAGATGTGGTCTTACATGTAATAAAATATGATGCCGAT Found at i:69027958 original size:29 final size:28 Alignment explanation
Indices: 69027916--69027971 Score: 94 Period size: 29 Copynumber: 2.0 Consensus size: 28 69027906 TGTGAGTTAT * 69027916 ACTGATTTGGCTTCGGGCCATAAATATCG 1 ACTGATTTGGCTTCGGACCAT-AATATCG 69027945 ACTGATTTGGCTTCGGACCATAATATC 1 ACTGATTTGGCTTCGGACCATAATATC 69027972 AGTAATTCGG Statistics Matches: 26, Mismatches: 1, Indels: 1 0.93 0.04 0.04 Matches are distributed among these distances: 28 6 0.23 29 20 0.77 ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32 Consensus pattern (28 bp): ACTGATTTGGCTTCGGACCATAATATCG Found at i:69029072 original size:17 final size:17 Alignment explanation
Indices: 69029050--69029084 Score: 61 Period size: 17 Copynumber: 2.1 Consensus size: 17 69029040 CACGACCTCA 69029050 CACACGGGCGTGCATGG 1 CACACGGGCGTGCATGG * 69029067 CACACGGGCGTGTATGG 1 CACACGGGCGTGCATGG 69029084 C 1 C 69029085 CATTTTTAGG Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 17 17 1.00 ACGTcount: A:0.17, C:0.29, G:0.40, T:0.14 Consensus pattern (17 bp): CACACGGGCGTGCATGG Found at i:69032720 original size:29 final size:28 Alignment explanation
Indices: 69032687--69032742 Score: 85 Period size: 29 Copynumber: 2.0 Consensus size: 28 69032677 GGGTTATACC * 69032687 GATTTGGCTTCTGGCCATGAATATCAGTT 1 GATTTGGCTTCGGGCCATG-ATATCAGTT * 69032716 GATTTGGGTTCGGGCCATGATATCAGT 1 GATTTGGCTTCGGGCCATGATATCAGT 69032743 ATTTTAAATA Statistics Matches: 25, Mismatches: 2, Indels: 1 0.89 0.07 0.04 Matches are distributed among these distances: 28 8 0.32 29 17 0.68 ACGTcount: A:0.20, C:0.16, G:0.29, T:0.36 Consensus pattern (28 bp): GATTTGGCTTCGGGCCATGATATCAGTT Found at i:69035859 original size:24 final size:24 Alignment explanation
Indices: 69035827--69035934 Score: 92 Period size: 24 Copynumber: 4.5 Consensus size: 24 69035817 TACTTATTCA * 69035827 CACACATAGTGCCACGT-TTCCTCG 1 CACACATAGTGCCACGTAGT-CTCG * 69035851 CACACATAGTGCCATGTAGTCTCG 1 CACACATAGTGCCACGTAGTCTCG * * * * 69035875 CACACATAGTGCCACTTATTTTTG 1 CACACATAGTGCCACGTAGTCTCG * * * ** * 69035899 CACATATAGTGCCGCATAACCTTG 1 CACACATAGTGCCACGTAGTCTCG 69035923 CACACATAGTGC 1 CACACATAGTGC 69035935 TAAAATTTCT Statistics Matches: 69, Mismatches: 14, Indels: 2 0.81 0.16 0.02 Matches are distributed among these distances: 24 68 0.99 25 1 0.01 ACGTcount: A:0.26, C:0.31, G:0.17, T:0.27 Consensus pattern (24 bp): CACACATAGTGCCACGTAGTCTCG Found at i:69045543 original size:40 final size:40 Alignment explanation
Indices: 69045261--69045529 Score: 405 Period size: 40 Copynumber: 6.7 Consensus size: 40 69045251 TATTCGGTTG * * * 69045261 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACC 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT * ** * 69045301 A-ATTCCGGGCTAAGTCCCGGTGGCAATTGTGCGAGTTACT 1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 69045341 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT * * * 69045381 TTAACCGGGCTAAATCCCGAAGGCAATTGTGCGAGTTACT 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 69045421 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT * * 69045461 TTAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT * 69045501 ATAACCAGGCTAAGTCCCGAAGGCATTTG 1 ATAACCGGGCTAAGTCCCGAAGGCATTTG 69045530 AGCAAGTAGC Statistics Matches: 206, Mismatches: 21, Indels: 4 0.89 0.09 0.02 Matches are distributed among these distances: 39 1 0.00 40 204 0.99 41 1 0.00 ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25 Consensus pattern (40 bp): ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT Found at i:69053478 original size:119 final size:120 Alignment explanation
Indices: 69053265--69053539 Score: 444 Period size: 119 Copynumber: 2.3 Consensus size: 120 69053255 TATTCGGATG ** ** 69053265 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGTTAGTGACCAATTCCGGGCTAAGTCCCGAAGGCA 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACCAATAACGGGCTAAGTCCCGAAGGCA 69053330 ATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 66 ATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT * * * * 69053385 TTAACCGGGCTAAGTCCCGAAGGCAATTGTGCAAGTTA-CTATAACGGGCTAAGTCCCGAAGGCA 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACCAATAACGGGCTAAGTCCCGAAGGCA * * 69053449 TTTGTGCGAGTTACTTTAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 66 ATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT * 69053504 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGT 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT 69053540 AGCTATATCC Statistics Matches: 142, Mismatches: 13, Indels: 1 0.91 0.08 0.01 Matches are distributed among these distances: 119 109 0.77 120 33 0.23 ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25 Consensus pattern (120 bp): ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACCAATAACGGGCTAAGTCCCGAAGGCA ATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT Found at i:69053546 original size:40 final size:40 Alignment explanation
Indices: 69053265--69053532 Score: 423 Period size: 40 Copynumber: 6.7 Consensus size: 40 69053255 TATTCGGATG ** * * 69053265 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGTTAGTGACC 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT * * 69053305 A-ATTCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT 1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 69053345 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT * * * 69053385 TTAACCGGGCTAAGTCCCGAAGGCAATTGTGCAAGTTACT 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 69053425 ATAA-CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT * 69053464 TTAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 69053504 ATAACCGGGCTAAGTCCCGAAGGCATTTG 1 ATAACCGGGCTAAGTCCCGAAGGCATTTG 69053533 AGCAAGTAGC Statistics Matches: 209, Mismatches: 16, Indels: 6 0.90 0.07 0.03 Matches are distributed among these distances: 39 37 0.18 40 171 0.82 41 1 0.00 ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25 Consensus pattern (40 bp): ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT Found at i:69060099 original size:35 final size:38 Alignment explanation
Indices: 69060046--69060152 Score: 175 Period size: 35 Copynumber: 2.8 Consensus size: 38 69060036 GTACATAATA 69060046 ATATATGTGATAAGGCCTAATGGCCGATGTGAAATG-T 1 ATATATGTGATAAGGCCTAATGGCCGATGTGAAATGAT 69060083 ATATAT-TGATAA-GCCTAATGGCCGATGTGAAAATGTAT 1 ATATATGTGATAAGGCCTAATGGCCGATGTG-AAATG-AT 69060121 ATATATGTGATAAGGCCTAATGGCCGATGTGA 1 ATATATGTGATAAGGCCTAATGGCCGATGTGA 69060153 TGAATGTGAA Statistics Matches: 65, Mismatches: 0, Indels: 8 0.89 0.00 0.11 Matches are distributed among these distances: 35 17 0.26 36 11 0.17 37 6 0.09 38 7 0.11 39 7 0.11 40 17 0.26 ACGTcount: A:0.34, C:0.11, G:0.25, T:0.30 Consensus pattern (38 bp): ATATATGTGATAAGGCCTAATGGCCGATGTGAAATGAT Found at i:69060163 original size:49 final size:49 Alignment explanation
Indices: 69060107--69060459 Score: 541 Period size: 49 Copynumber: 7.4 Consensus size: 49 69060097 CTAATGGCCG 69060107 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA 1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA * * 69060156 ATGTGAAAGTGCATATATATGTGATAAGGCCTAATGGCCGATGTGATGA 1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA 69060205 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA 1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA * 69060254 ATGTGAAAATGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGA 1 ATGTGAAAATG--TATATATATGTGATAAGGCCTAATGGCCGATGTGATGA * 69060305 ATGTGAAAGTGTATATATATGTG---A----TAA-GGCC--TGTGATGA 1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA * 69060344 ATGTGAAAGTGTATATATATGTG-TAAGGCCTAATGGCCGATGTGATGA 1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA * 69060392 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC-ACGTGATGA 1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA * 69060440 ATGTGAAAGTGTATATATAT 1 ATGTGAAAATGTATATATAT 69060460 ATGTGGTAAA Statistics Matches: 282, Mismatches: 10, Indels: 25 0.89 0.03 0.08 Matches are distributed among these distances: 39 30 0.11 41 5 0.02 42 3 0.01 45 3 0.01 46 5 0.02 48 57 0.20 49 132 0.47 51 47 0.17 ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31 Consensus pattern (49 bp): ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA Found at i:69060222 original size:98 final size:97 Alignment explanation
Indices: 69060107--69060459 Score: 555 Period size: 100 Copynumber: 3.7 Consensus size: 97 69060097 CTAATGGCCG * 69060107 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGCATAT 1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC-ATGTGATGAATGTGAAAGTGTATAT 69060172 ATATGTGATAAGGCCTAATGGCCGATGTGATGA 65 ATATGTGATAAGGCCTAATGGCCGATGTGATGA * 69060205 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT 1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC-ATGTGATGAATGTG-AAA-GTGTAT * 69060270 ATATATGTGATAAGGCCTAATGGCCGACGTGATGA 63 ATATATGTGATAAGGCCTAATGGCCGATGTGATGA * 69060305 ATGTGAAAGTGTATATATATGTG---A----TAA-GGCC-TGTGATGAATGTGAAAGTGTATATA 1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCATGTGATGAATGTGAAAGTGTATATA 69060361 TATGTG-TAAGGCCTAATGGCCGATGTGATGA 66 TATGTGATAAGGCCTAATGGCCGATGTGATGA * 69060392 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCACGTGATGAATGTGAAAGTGTATATA 1 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCATGTGATGAATGTGAAAGTGTATATA 69060457 TAT 66 TAT 69060460 ATGTGGTAAA Statistics Matches: 236, Mismatches: 8, Indels: 24 0.88 0.03 0.09 Matches are distributed among these distances: 87 46 0.19 88 14 0.06 89 3 0.01 90 14 0.06 92 4 0.02 93 3 0.01 94 3 0.01 95 4 0.02 96 27 0.11 97 1 0.00 98 54 0.23 99 3 0.01 100 60 0.25 ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31 Consensus pattern (97 bp): ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCATGTGATGAATGTGAAAGTGTATATA TATGTGATAAGGCCTAATGGCCGATGTGATGA Found at i:69060341 original size:39 final size:39 Alignment explanation
Indices: 69060298--69060423 Score: 162 Period size: 39 Copynumber: 3.0 Consensus size: 39 69060288 AATGGCCGAC 69060298 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT 1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT 69060337 GTGATGAATGTGAAAGTGTATATATATGTGTAAGGCCTAATGGCCGAT 1 GTGATGAATGTGAAAGTGTATATATATGTG--A----TAA-GGCC--T * 69060385 GTGATGAATGTGAAAATGTATATATATGTGATAAGGCCT 1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT 69060424 AATGGCCACG Statistics Matches: 77, Mismatches: 1, Indels: 18 0.80 0.01 0.19 Matches are distributed among these distances: 39 31 0.40 41 5 0.06 42 3 0.04 45 3 0.04 46 5 0.06 48 30 0.39 ACGTcount: A:0.33, C:0.06, G:0.28, T:0.33 Consensus pattern (39 bp): GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT Found at i:69060392 original size:48 final size:48 Alignment explanation
Indices: 69060332--69060459 Score: 215 Period size: 48 Copynumber: 2.7 Consensus size: 48 69060322 TATGTGATAA 69060332 GGCC-TGTGATGAATGTGAAAGTGTATATATATGTG-TAAGGCCTAAT 1 GGCCATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT * 69060378 GGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAAT 1 GGCC-ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT * 69060427 GGCCACGTGATGAATGTGAAAGTGTATATATAT 1 GGCCATGTGATGAATGTGAAAGTGTATATATAT 69060460 ATGTGGTAAA Statistics Matches: 76, Mismatches: 3, Indels: 4 0.92 0.04 0.05 Matches are distributed among these distances: 46 4 0.05 48 57 0.75 49 15 0.20 ACGTcount: A:0.33, C:0.09, G:0.27, T:0.31 Consensus pattern (48 bp): GGCCATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT Found at i:69060394 original size:87 final size:90 Alignment explanation
Indices: 69060246--69060423 Score: 308 Period size: 87 Copynumber: 2.0 Consensus size: 90 69060236 TAATGGCCGA 69060246 TGTGATGAATGTGAAAATGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGA 1 TGTGATGAATGTGAAAATGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGA * 69060311 AAGTGTATATATATGTGATAAGGCC 66 AAATGTATATATATGTGATAAGGCC * * 69060336 TGTGATGAATGTG-AAA-GTGTATATATATGTG-TAAGGCCTAATGGCCGATGTGATGAATGTGA 1 TGTGATGAATGTGAAAATGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGA 69060398 AAATGTATATATATGTGATAAGGCC 66 AAATGTATATATATGTGATAAGGCC 69060423 T 1 T 69060424 AATGGCCACG Statistics Matches: 85, Mismatches: 3, Indels: 3 0.93 0.03 0.03 Matches are distributed among these distances: 87 55 0.65 88 14 0.16 89 3 0.04 90 13 0.15 ACGTcount: A:0.34, C:0.07, G:0.27, T:0.32 Consensus pattern (90 bp): TGTGATGAATGTGAAAATGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGA AAATGTATATATATGTGATAAGGCC Found at i:69060583 original size:37 final size:36 Alignment explanation
Indices: 69060528--69060614 Score: 147 Period size: 37 Copynumber: 2.3 Consensus size: 36 69060518 AACTTGGAAA 69060528 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT 1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT 69060566 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT 1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT 69060603 TATGTCCGGGTA 1 TATGTCCGGGTA 69060615 AGACTTCGTA Statistics Matches: 48, Mismatches: 0, Indels: 3 0.94 0.00 0.06 Matches are distributed among these distances: 36 1 0.02 37 43 0.90 38 4 0.08 ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26 Consensus pattern (36 bp): TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT Found at i:69062543 original size:40 final size:40 Alignment explanation
Indices: 69062485--69062756 Score: 454 Period size: 40 Copynumber: 6.8 Consensus size: 40 69062475 GAGAATTGAG 69062485 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT 1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT * 69062525 AACGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT 1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT 69062565 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT 1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT * * 69062605 AATGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT 1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT * * * 69062645 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT 1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT 69062685 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT 1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT * * * * 69062725 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA 1 AATGATGTATCCGGACTAAGTTCCGAAGAGCA 69062757 ATCATGCTGG Statistics Matches: 220, Mismatches: 12, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 40 220 1.00 ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26 Consensus pattern (40 bp): AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT Found at i:69063594 original size:40 final size:41 Alignment explanation
Indices: 69063499--69063601 Score: 113 Period size: 41 Copynumber: 2.5 Consensus size: 41 69063489 GAATGGTATT * ** * * 69063499 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATC 1 CGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAAATC 69063540 CGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TCACTATAA-C 1 CGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTCACTA-AATC * 69063580 CGGGCTATGTCCCGAAGACAAT 1 CGGGCTATGTCCCGAAGGCAAT 69063602 CGAGCGAGTC Statistics Matches: 53, Mismatches: 6, Indels: 7 0.80 0.09 0.11 Matches are distributed among these distances: 39 2 0.04 40 24 0.45 41 26 0.49 42 1 0.02 ACGTcount: A:0.27, C:0.24, G:0.25, T:0.23 Consensus pattern (41 bp): CGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAAATC Found at i:69063617 original size:40 final size:40 Alignment explanation
Indices: 69063539--69063622 Score: 98 Period size: 40 Copynumber: 2.1 Consensus size: 40 69063529 GTGACTAAAT * * * 69063539 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA 1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA * * * 69063579 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT 1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA 69063619 CCGG 1 CCGG 69063623 TTAAATTCCG Statistics Matches: 37, Mismatches: 6, Indels: 2 0.82 0.13 0.04 Matches are distributed among these distances: 39 2 0.05 40 35 0.95 ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20 Consensus pattern (40 bp): CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA Found at i:69066475 original size:49 final size:49 Alignment explanation
Indices: 69066403--69066707 Score: 477 Period size: 49 Copynumber: 6.4 Consensus size: 49 69066393 CTAATGGCCG * 69066403 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA 1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA 69066452 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA 1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA * * 69066501 ATGTGAAATGTATATATATATGTGATAAGGCCTAATGGCCGACGTGATGA 1 ATGTGAAA-GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA 69066551 ATGTGAAAGTGTATATATATGTG---A----TAA-GGCC--TGTGATGA 1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA * 69066590 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGA 1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA * * 69066639 ATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGA 1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA 69066688 ATGTGAAAGTGTATATATAT 1 ATGTGAAAGTGTATATATAT 69066708 ATGTGGTAAA Statistics Matches: 235, Mismatches: 10, Indels: 22 0.88 0.04 0.08 Matches are distributed among these distances: 39 30 0.13 41 4 0.02 42 4 0.02 46 4 0.02 47 3 0.01 49 143 0.61 50 47 0.20 ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31 Consensus pattern (49 bp): ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA Found at i:69066526 original size:99 final size:99 Alignment explanation
Indices: 69066414--69066727 Score: 470 Period size: 88 Copynumber: 3.3 Consensus size: 99 69066404 TGTGAAAATG 69066414 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA 1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA 69066479 GGCCTAATGGCCGATGTGATGAATGTGAAATGTA 66 GGCCTAATGGCCGATGTGATGAATGTGAAATGTA * 69066513 TATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTG---A 1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA * 69066575 ----TAA-GGCC--TGTGATGAATGTGAAA-GTG 66 GGCCTAATGGCCGATGTGATGAATGTGAAATGTA * * 69066601 TATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAATGTATATATATGTGATAA 1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA * 69066666 GGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA 66 GGCCTAATGGCCGATGTGATGAATGTGAAA-TGTA * * * 69066701 TATATATATGTGGTAAAGCCGAATGGC 1 TATATATATGTGATAAGGCCTAATGGC 69066728 TAATGTGAAT Statistics Matches: 193, Mismatches: 10, Indels: 23 0.85 0.04 0.10 Matches are distributed among these distances: 88 60 0.31 89 16 0.08 91 5 0.03 92 3 0.02 95 3 0.02 96 5 0.03 98 15 0.08 99 60 0.31 100 26 0.13 ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31 Consensus pattern (99 bp): TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA GGCCTAATGGCCGATGTGATGAATGTGAAATGTA Found at i:69066587 original size:39 final size:39 Alignment explanation
Indices: 69066544--69066621 Score: 156 Period size: 39 Copynumber: 2.0 Consensus size: 39 69066534 AATGGCCGAC 69066544 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT 1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT 69066583 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT 1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT 69066622 AATGGCTGAT Statistics Matches: 39, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 39 39 1.00 ACGTcount: A:0.33, C:0.05, G:0.28, T:0.33 Consensus pattern (39 bp): GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT Found at i:69066830 original size:37 final size:36 Alignment explanation
Indices: 69066775--69066861 Score: 147 Period size: 37 Copynumber: 2.3 Consensus size: 36 69066765 AACTTGGAAA 69066775 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT 1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT 69066813 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT 1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT 69066850 TATGTCCGGGTA 1 TATGTCCGGGTA 69066862 AGACTTCGTA Statistics Matches: 48, Mismatches: 0, Indels: 3 0.94 0.00 0.06 Matches are distributed among these distances: 36 1 0.02 37 43 0.90 38 4 0.08 ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26 Consensus pattern (36 bp): TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT Found at i:69071996 original size:119 final size:121 Alignment explanation
Indices: 69071783--69072046 Score: 383 Period size: 119 Copynumber: 2.2 Consensus size: 121 69071773 TATTCGGATG * * 69071783 ATAACCGGGCTAAGTCCCGAAGGC-ATTCGTGCTAGTGACCAATTCCGGGCTAAGTCCCGAAGGC 1 ATAACCGGGCTAAGTCCCGAAGGCAATTCGTGCGAGTGACCAATACCGGGCTAAGTCCCGAAGGC 69071847 AATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT 66 AATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT * * * * 69071903 TTAACCGGGCTCAGTCCCGAAGGCAATT-GTGCGAGTTA-CTATAACCGGGCTAAGT-CCGAAGG 1 ATAACCGGGCTAAGTCCCGAAGGCAATTCGTGCGAGTGACCAAT-ACCGGGCTAAGTCCCGAAGG * * * ** * 69071965 CATTTGTGTGAGTTACTTTAACCGGGCTAAGTCTTGAAGGCATTTGTGCGAGTTACT 65 CAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT 69072022 ATAACCGGGCTAAGTCCCGAAGGCA 1 ATAACCGGGCTAAGTCCCGAAGGCA 69072047 TTTGAGCAAG Statistics Matches: 128, Mismatches: 14, Indels: 5 0.87 0.10 0.03 Matches are distributed among these distances: 119 84 0.66 120 41 0.32 121 3 0.02 ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25 Consensus pattern (121 bp): ATAACCGGGCTAAGTCCCGAAGGCAATTCGTGCGAGTGACCAATACCGGGCTAAGTCCCGAAGGC AATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT Found at i:69072064 original size:40 final size:40 Alignment explanation
Indices: 69071783--69072050 Score: 387 Period size: 40 Copynumber: 6.7 Consensus size: 40 69071773 TATTCGGATG * * * * 69071783 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACC 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT * * 69071823 A-ATTCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT 1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT * 69071863 ATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT * * * 69071903 TTAACCGGGCTCAGTCCCGAAGGCAATTGTGCGAGTTACT 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT * 69071943 ATAACCGGGCTAAGT-CCGAAGGCATTTGTGTGAGTTACT 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT * ** 69071982 TTAACCGGGCTAAGTCTTGAAGGCATTTGTGCGAGTTACT 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 69072022 ATAACCGGGCTAAGTCCCGAAGGCATTTG 1 ATAACCGGGCTAAGTCCCGAAGGCATTTG 69072051 AGCAAGTAGC Statistics Matches: 201, Mismatches: 24, Indels: 6 0.87 0.10 0.03 Matches are distributed among these distances: 39 37 0.18 40 163 0.81 41 1 0.00 ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25 Consensus pattern (40 bp): ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT Found at i:69072080 original size:119 final size:118 Alignment explanation
Indices: 69071783--69072083 Score: 363 Period size: 119 Copynumber: 2.5 Consensus size: 118 69071773 TATTCGGATG * * * * * 69071783 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACCA-ATTCCGGGCTAAGTCCCGAAGGC 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ACTATA-T-CGGGCTAAATTCCGAAGGC 69071847 AATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT 63 AATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT * * * * * * 69071903 TTAACCGGGCTCAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCT-AAGTCCGAAGGCA 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTAT-ATCGGGCTAAATTCCGAAGGCA * * * ** * 69071967 TTTGTGTGAGTTACTTTAACCGGGCTAAGTCTTGAAGGCATTTGTGCGAGTTACT 64 ATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT * * 69072022 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATATCTGGCTAAATTCCGAAGG 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-CTATATCGGGCTAAATTCCGAAGG 69072084 TACTTGGTTT Statistics Matches: 152, Mismatches: 24, Indels: 11 0.81 0.13 0.06 Matches are distributed among these distances: 118 8 0.05 119 103 0.68 120 39 0.26 121 1 0.01 122 1 0.01 ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25 Consensus pattern (118 bp): ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTACTATATCGGGCTAAATTCCGAAGGCAAT TGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT Found at i:69079145 original size:9 final size:9 Alignment explanation
Indices: 69079133--69079166 Score: 59 Period size: 9 Copynumber: 3.8 Consensus size: 9 69079123 TTGATTATTT 69079133 TGAATGAAA 1 TGAATGAAA 69079142 TGAATGAAA 1 TGAATGAAA 69079151 TGAATGAAA 1 TGAATGAAA * 69079160 TGGATGA 1 TGAATGA 69079167 TTGAATGGTT Statistics Matches: 24, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 9 24 1.00 ACGTcount: A:0.50, C:0.00, G:0.26, T:0.24 Consensus pattern (9 bp): TGAATGAAA Found at i:69088255 original size:40 final size:40 Alignment explanation
Indices: 69088171--69088355 Score: 209 Period size: 40 Copynumber: 4.7 Consensus size: 40 69088161 TCGAATGATG * * * 69088171 TCCGGGCTAAATCCCGAAGGC-TTTGTGCTAAGTGACT-AT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT * 69088210 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT 1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT * * 69088251 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT * * 69088290 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT * * 69088329 AACCGGGCTATGTCCCGAAGGCATTTG 1 -TCCGGGCTAAGTCCCGAAGGCATTTG 69088356 AACGAGTAGC Statistics Matches: 124, Mismatches: 15, Indels: 12 0.82 0.10 0.08 Matches are distributed among these distances: 39 35 0.28 40 79 0.64 41 10 0.08 ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26 Consensus pattern (40 bp): TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT Found at i:69088378 original size:79 final size:79 Alignment explanation
Indices: 69088224--69088378 Score: 190 Period size: 79 Copynumber: 2.0 Consensus size: 79 69088214 GGACTAAGAT * ** 69088224 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA 1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA ** 69088289 ATCTGGGTTAAGTC 66 ATCTCAGTTAAGTC * * 69088303 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC 1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C * 69088366 TATATC-CAGTTAA 63 TAAATCTCAGTTAA 69088379 ATTTCGAAGG Statistics Matches: 65, Mismatches: 8, Indels: 6 0.82 0.10 0.08 Matches are distributed among these distances: 78 2 0.03 79 40 0.62 80 23 0.35 ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26 Consensus pattern (79 bp): CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA ATCTCAGTTAAGTC Found at i:69099493 original size:627 final size:626 Alignment explanation
Indices: 69098288--69099538 Score: 1956 Period size: 627 Copynumber: 2.0 Consensus size: 626 69098278 ATGATGACCT * * * * * 69098288 GTTTGATCAATTGAAAGGAGTGACATGGTTTTCAAAAATAGACTTGAGATCCAGCTACTATTAGT 1 GTTTGATCAATTAAAAGGAATGACATGCTTTTCAAAAATAAACTTGAGATCCAGCTACTATCAGT * ** 69098353 TGCGAGTTAAAGAGTCGGATGTACCTAAAACTGCTTTTAGAATGAGGTATGGCCACTATGAATTT 66 TGCGAGTTAAAGAGTCGGATGTACCTAAAACTACTTTTAGAACAAGGTATGGCCACTATGAATTT * * 69098418 CTTGTTATGCCATTTGGGTTAACGAATGCACTACTGTGTTTATGGATTTAATGAATCAAATATTT 131 CTTGTTATGCCATTTGGGTTAACGAACGCACTACTGTGTTTATGGATTTAATGAATCAAATATCT * 69098483 AGGCCATATTTGGACAAGTTTATGGTTGTGTTTATTAATGATATTCTGATTTATTCGAGAAATGA 196 AGGCCATATTTGGACAAGTTTATAGTTGTGTTTATTAATGATATTCTGATTTATTCGAGAAATGA * * 69098548 GGCAAAGCATACCAAACACTTGAGAACTATTTTGCAGACTTTGAGAGATGAACAGTTGTATGCCA 261 GGCAAAGCATACCAAACACTTGAGAACTATTTTGCAGACTTTGAAAGATAAACAGTTGTATGCCA * * 69098613 AGTTTAGTAAAAGTGAGTTTTGGCTTCGAGAAGCTGGATTTTTGGGCACATTGTTTCGAGTGATG 326 AGTTTAGTAAAAGTGAGTTTTGGCTTCGAGAAACTGGATTTTTGGGCACATTGTTTAGAGTGATG * * 69098678 GTATTAGAGTTGACCCGAGTAAGATCTCAGTTATTATTGAATGGAAACCGTCGAGAAATGTTACT 391 GTATTAGAGTTGACCCGAGTAAGATCTCAGCTATTATTGAATGGAAACCGTCGAGAAATGTAACT 69098743 GAGGTTAAAAGCTTTCTAGGCTTGGCTAATTATTACAAAAGGTTTGTTAAAGGATTCTCCATGAT 456 GAGGTTAAAAGCTTTCTAGGCTTGGCTAATTATTACAAAAGGTTTGTTAAAGGATTCTCCATGAT * ** 69098808 TGCTACTCCGATGACGAGGTTGTTACAGAAAGATGTCAAGTTTGAACGGATTGAAAAATGCCAGC 521 TGCTACTCCGATGACGAGGTTGTTACAGAAAGATGTCAAGTTCGAACGGACAGAAAAATGCCAGC * 69098873 AGAGTTTTGAGAAATTAAAGGCATTGTTGACTGAGGCTCCG 586 AGAGTTTTCAGAAATTAAAGGCATTGTTGACTGAGGCTCCG * * 69098914 GTTTGATCAATTAAAAGGAATGACATGCTTTTCTAAAATAAACTTGACG-TCCGGCTACTATCAG 1 GTTTGATCAATTAAAAGGAATGACATGCTTTTCAAAAATAAACTTGA-GATCCAGCTACTATCAG 69098978 TTGCGAGTTAAAGAGTCGGATGTACCTAAAACTACTTTTAGAACAAGGTATGGCCACTATGAATT 65 TTGCGAGTTAAAGAGTCGGATGTACCTAAAACTACTTTTAGAACAAGGTATGGCCACTATGAATT * * ** 69099043 TCTTGTTATGCCATTTGGGTTGACGAACGCACCTTCTGTGTTTATGGATTTAATGAATTGAATAT 130 TCTTGTTATGCCATTTGGGTTAACGAACGCA-CTACTGTGTTTATGGATTTAATGAATCAAATAT * * * * * * 69099108 CTCGGCCATATTTGGACAAGTTTGTAGTTGTGTTTATTGATGATATTTTGATTTATTCGATAGAT 194 CTAGGCCATATTTGGACAAGTTTATAGTTGTGTTTATTAATGATATTCTGATTTATTCGAGAAAT * * * 69099173 GAGGCAAAGCATGCCGAACACTTGAGAACTATTTTGTAGACTTTGAAAGATAAACAGTTGTATGC 259 GAGGCAAAGCATACCAAACACTTGAGAACTATTTTGCAGACTTTGAAAGATAAACAGTTGTATGC * 69099238 CAAGTTTAGTAAAAGTGAGTTTTGGCTTCGAGAAATTGGATTTTTGGGCACATTGTTTA-AGGTG 324 CAAGTTTAGTAAAAGTGAGTTTTGGCTTCGAGAAACTGGATTTTTGGGCACATTGTTTAGA-GTG * ** 69099302 ATGGTATTAGTA-TTGACCCGAGTAAGATCTCGGCTATTATTGAATGGAAATTG-CGGAGAAATG 388 ATGGTATTAG-AGTTGACCCGAGTAAGATCTCAGCTATTATTGAATGGAAACCGTC-GAGAAATG * * * * 69099365 TAACTGAGGTTAGAAGCTTTCTAGGCTTGG-TCAGTTATTACAGACGGTTTGTTAAAGGATTCTC 451 TAACTGAGGTTAAAAGCTTTCTAGGCTTGGCT-AATTATTACAAAAGGTTTGTTAAAGGATTCTC * * * 69099429 CATGATTGCTACT-CGAATGATGAGGTTGTTATAGAAAGATGTCAAGTTCGAATGGACAGAAAAA 515 CATGATTGCTACTCCG-ATGACGAGGTTGTTACAGAAAGATGTCAAGTTCGAACGGACAGAAAAA * * 69099493 TGCCAGCAGAGTTTTCAGAAATTAAAGGCATTTTTTACTGAGGCTC 579 TGCCAGCAGAGTTTTCAGAAATTAAAGGCATTGTTGACTGAGGCTC 69099539 TAGTTTTAGT Statistics Matches: 569, Mismatches: 49, Indels: 13 0.90 0.08 0.02 Matches are distributed among these distances: 626 151 0.27 627 417 0.73 628 1 0.00 ACGTcount: A:0.30, C:0.13, G:0.23, T:0.33 Consensus pattern (626 bp): GTTTGATCAATTAAAAGGAATGACATGCTTTTCAAAAATAAACTTGAGATCCAGCTACTATCAGT TGCGAGTTAAAGAGTCGGATGTACCTAAAACTACTTTTAGAACAAGGTATGGCCACTATGAATTT CTTGTTATGCCATTTGGGTTAACGAACGCACTACTGTGTTTATGGATTTAATGAATCAAATATCT AGGCCATATTTGGACAAGTTTATAGTTGTGTTTATTAATGATATTCTGATTTATTCGAGAAATGA GGCAAAGCATACCAAACACTTGAGAACTATTTTGCAGACTTTGAAAGATAAACAGTTGTATGCCA AGTTTAGTAAAAGTGAGTTTTGGCTTCGAGAAACTGGATTTTTGGGCACATTGTTTAGAGTGATG GTATTAGAGTTGACCCGAGTAAGATCTCAGCTATTATTGAATGGAAACCGTCGAGAAATGTAACT GAGGTTAAAAGCTTTCTAGGCTTGGCTAATTATTACAAAAGGTTTGTTAAAGGATTCTCCATGAT TGCTACTCCGATGACGAGGTTGTTACAGAAAGATGTCAAGTTCGAACGGACAGAAAAATGCCAGC AGAGTTTTCAGAAATTAAAGGCATTGTTGACTGAGGCTCCG Found at i:69111174 original size:40 final size:39 Alignment explanation
Indices: 69111115--69111301 Score: 167 Period size: 40 Copynumber: 4.7 Consensus size: 39 69111105 AACTTGAATG * * * 69111115 ATATCCGGGCTAAGTCCCGAAGACATTAATGCTGGAAATT 1 ATATCCGGGCTAAGACCCGAAGACATT-ATGCTAGTAATT * * * *** 69111155 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT 1 ATATCCGGGCTAAGACCCGAAGAC-ATTATGCTAGTAATT * * * 69111195 ACATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATT 1 ATATCCGGGCTAAGACCCGAAGACA-TTATGCTAGTAATT * * * * 69111235 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT 1 ATATCCGGGCTAAGACCCGAAGACATT-ATGCTAGTAATT * * * 69111275 CTATTCGGGCTAAGACCCGAAGGCATT 1 ATATCCGGGCTAAGACCCGAAGACATT 69111302 TGTGCAAATC Statistics Matches: 117, Mismatches: 27, Indels: 6 0.78 0.18 0.04 Matches are distributed among these distances: 39 3 0.03 40 111 0.95 41 3 0.03 ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25 Consensus pattern (39 bp): ATATCCGGGCTAAGACCCGAAGACATTATGCTAGTAATT Found at i:69111294 original size:80 final size:79 Alignment explanation
Indices: 69111117--69111270 Score: 229 Period size: 80 Copynumber: 1.9 Consensus size: 79 69111107 CTTGAATGAT * * * * 69111117 ATCCGGGCTAAGTCCCGAAGACATTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT 1 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAAT * 69111182 TGTGCTAGTGGCTAC 66 TGTGCGAGT-GCTAC * 69111197 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGC-AT 1 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAAT 69111261 TCGTGCGAGT 66 T-GTGCGAGT 69111271 CATTCTATTC Statistics Matches: 67, Mismatches: 6, Indels: 2 0.89 0.08 0.03 Matches are distributed among these distances: 79 3 0.04 80 64 0.96 ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24 Consensus pattern (79 bp): ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAAT TGTGCGAGTGCTAC Found at i:69111302 original size:80 final size:79 Alignment explanation
Indices: 69111117--69111302 Score: 225 Period size: 80 Copynumber: 2.3 Consensus size: 79 69111107 CTTGAATGAT * * * * 69111117 ATCCGGGCTAAGTCCCGAAGACATTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT 1 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAAT * 69111182 TGTGCTAGTGGCTAC 66 TGTGCGAGT-GCTAC * 69111197 ATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGC-A 1 ATCCGGGCTAAGTCCCGAAGG-CATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA * 69111260 TTCGTGCGAGT-CATTC 65 TT-GTGCGAGTGC-TAC * * 69111276 TATTCGGGCTAAGACCCGAAGGCATTT 1 -ATCCGGGCTAAGTCCCGAAGGCATTT 69111303 GTGCAAATCG Statistics Matches: 92, Mismatches: 9, Indels: 10 0.83 0.08 0.09 Matches are distributed among these distances: 78 1 0.01 79 7 0.08 80 81 0.88 81 3 0.03 ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25 Consensus pattern (79 bp): ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAAT TGTGCGAGTGCTAC Found at i:69111329 original size:120 final size:120 Alignment explanation
Indices: 69111115--69111333 Score: 262 Period size: 120 Copynumber: 1.8 Consensus size: 120 69111105 AACTTGAATG * * 69111115 ATATCCGGGCTAAGTCCCGAAGACATTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA 1 ATATCCGGGCTAAGACCCGAAGACATTAATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA * * * * 69111180 ATTGTGCTAGTGGCTACATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATT 66 ATTGTGCAAATCGCTACATCCGAGCTAAGTCCCGAGGACATTTATGCTAGTAATT * ** ** * * 69111235 ATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATTCGGGCTAAGACCCGAAGGC 1 ATATCCGGGCTAAGACCCGAAGACATTAATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC * * * 69111299 ATTTGTGCAAATCG-TGATATCCGAGTTAAGTCCCG 65 AATTGTGCAAATCGCT-ACATCCGAGCTAAGTCCCG 69111334 TAGGCCTTGG Statistics Matches: 81, Mismatches: 16, Indels: 4 0.80 0.16 0.04 Matches are distributed among these distances: 119 2 0.02 120 79 0.98 ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25 Consensus pattern (120 bp): ATATCCGGGCTAAGACCCGAAGACATTAATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA ATTGTGCAAATCGCTACATCCGAGCTAAGTCCCGAGGACATTTATGCTAGTAATT Found at i:69114833 original size:21 final size:20 Alignment explanation
Indices: 69114777--69114833 Score: 78 Period size: 20 Copynumber: 2.8 Consensus size: 20 69114767 TAAACTTAAG ** 69114777 ACACGGGCGTGGAGGGTCTA 1 ACACGGGCGTGGAGAATCTA * 69114797 ACACAGGCGTGGAGAATCTA 1 ACACGGGCGTGGAGAATCTA 69114817 ACACGGGCGTGGGAGAA 1 ACACGGGCGT-GGAGAA 69114834 GCGAACGAAC Statistics Matches: 32, Mismatches: 4, Indels: 1 0.86 0.11 0.03 Matches are distributed among these distances: 20 26 0.81 21 6 0.19 ACGTcount: A:0.28, C:0.19, G:0.40, T:0.12 Consensus pattern (20 bp): ACACGGGCGTGGAGAATCTA Found at i:69114918 original size:26 final size:26 Alignment explanation
Indices: 69114882--69114939 Score: 89 Period size: 26 Copynumber: 2.2 Consensus size: 26 69114872 TGCACCACAC * * 69114882 GGCCCGGGTACATAGGTATGTCCAAT 1 GGCCCGGGTACACAGGCATGTCCAAT * 69114908 GGCCTGGGTACACAGGCATGTCCAAT 1 GGCCCGGGTACACAGGCATGTCCAAT 69114934 GGCCCG 1 GGCCCG 69114940 TGTGCGAACT Statistics Matches: 28, Mismatches: 4, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 26 28 1.00 ACGTcount: A:0.21, C:0.28, G:0.33, T:0.19 Consensus pattern (26 bp): GGCCCGGGTACACAGGCATGTCCAAT Found at i:69117090 original size:17 final size:17 Alignment explanation
Indices: 69117069--69117108 Score: 53 Period size: 17 Copynumber: 2.4 Consensus size: 17 69117059 AGTCCATTTA 69117069 ATTTTTAAATTATTTTT 1 ATTTTTAAATTATTTTT * ** 69117086 CTTTTTAGTTTATTTTT 1 ATTTTTAAATTATTTTT 69117103 ATTTTT 1 ATTTTT 69117109 GCATTTCTTT Statistics Matches: 19, Mismatches: 4, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 17 19 1.00 ACGTcount: A:0.20, C:0.03, G:0.03, T:0.75 Consensus pattern (17 bp): ATTTTTAAATTATTTTT Found at i:69119592 original size:27 final size:26 Alignment explanation
Indices: 69119536--69119592 Score: 60 Period size: 26 Copynumber: 2.2 Consensus size: 26 69119526 CAACCTTAAC * * * 69119536 CCTAGGGGTATATCAGTAATTTTACT 1 CCTAGGGGTAAATCAGTAATTGTACA * * 69119562 CCTAGGGGTAAATCTGTAAATTGTCCA 1 CCTAGGGGTAAATCAGT-AATTGTACA 69119589 CCTA 1 CCTA 69119593 TAAAGGTATT Statistics Matches: 25, Mismatches: 5, Indels: 1 0.81 0.16 0.03 Matches are distributed among these distances: 26 15 0.60 27 10 0.40 ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33 Consensus pattern (26 bp): CCTAGGGGTAAATCAGTAATTGTACA Found at i:69129612 original size:40 final size:40 Alignment explanation
Indices: 69129503--69129685 Score: 273 Period size: 40 Copynumber: 4.6 Consensus size: 40 69129493 TATTCGGATG * * * * 69129503 ATAACCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACC 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT * * 69129543 A-ATTCCGGGCTAAGT-CCGAAGGCAATTGTGCGAGTTACT 1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 69129582 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT * 69129622 TTAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT 69129662 ATAACCGGGCTAAGT-CCGAAGGCA 1 ATAACCGGGCTAAGTCCCGAAGGCA 69129686 ATTGAGCAAG Statistics Matches: 130, Mismatches: 10, Indels: 7 0.88 0.07 0.05 Matches are distributed among these distances: 39 41 0.32 40 89 0.68 ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24 Consensus pattern (40 bp): ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT Found at i:69129634 original size:79 final size:79 Alignment explanation
Indices: 69129503--69129685 Score: 273 Period size: 79 Copynumber: 2.3 Consensus size: 79 69129493 TATTCGGATG * * 69129503 ATAACCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACCAATTCCGGGCTAAGT-CCGAAGGCA 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAA-TCCGGGCTAAGTCCCGAAGGCA 69129567 ATTGTGCGAGTTACT 65 ATTGTGCGAGTTACT * * 69129582 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTTTAA-CCGGGCTAAGTCCCGAAGGC 1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGAC--CAATCCGGGCTAAGTCCCGAAGGC * 69129646 ATTTGTGCGAGTTACT 64 AATTGTGCGAGTTACT 69129662 ATAACCGGGCTAAGT-CCGAAGGCA 1 ATAACCGGGCTAAGTCCCGAAGGCA 69129686 ATTGAGCAAG Statistics Matches: 96, Mismatches: 5, Indels: 6 0.90 0.05 0.06 Matches are distributed among these distances: 79 56 0.58 80 38 0.40 81 2 0.02 ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24 Consensus pattern (79 bp): ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAATCCGGGCTAAGTCCCGAAGGCAA TTGTGCGAGTTACT Found at i:69134316 original size:25 final size:25 Alignment explanation
Indices: 69134262--69134340 Score: 79 Period size: 25 Copynumber: 3.2 Consensus size: 25 69134252 GGTTATCGAT * * * 69134262 TTCAGCTCTTATGAGCTTACTGATA 1 TTCAGCTCGTATGAGCTTACCGTTA * * 69134287 CTCAGCGCGTATGAGCTTACCGTTA 1 TTCAGCTCGTATGAGCTTACCGTTA * * 69134312 TTCAGCTCAG-AAGAGCTTATCGTTA 1 TTCAGCTC-GTATGAGCTTACCGTTA 69134337 TTCA 1 TTCA 69134341 ACTCAAAGGA Statistics Matches: 44, Mismatches: 9, Indels: 2 0.80 0.16 0.04 Matches are distributed among these distances: 25 43 0.98 26 1 0.02 ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34 Consensus pattern (25 bp): TTCAGCTCGTATGAGCTTACCGTTA Found at i:69134345 original size:25 final size:25 Alignment explanation
Indices: 69134299--69134356 Score: 82 Period size: 25 Copynumber: 2.3 Consensus size: 25 69134289 CAGCGCGTAT * 69134299 GAGCTTACCGTTATTCAGCTCAGAA- 1 GAGCTTACCGTTATTCAACTCA-AAG * 69134324 GAGCTTATCGTTATTCAACTCAAAG 1 GAGCTTACCGTTATTCAACTCAAAG 69134349 GAGCTTAC 1 GAGCTTAC 69134357 TGTTTACTGC Statistics Matches: 29, Mismatches: 3, Indels: 2 0.85 0.09 0.06 Matches are distributed among these distances: 24 2 0.07 25 27 0.93 ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29 Consensus pattern (25 bp): GAGCTTACCGTTATTCAACTCAAAG Found at i:69140442 original size:31 final size:31 Alignment explanation
Indices: 69140402--69140511 Score: 177 Period size: 31 Copynumber: 3.5 Consensus size: 31 69140392 CTTGACATAT * 69140402 ACTGGGCCGAA-TCTTTTCCATAAATCATACC 1 ACTGGGCCGAAGCCTTTT-CATAAATCATACC * 69140433 ACTAGGCCGAAGCCTTTTCATAAATCATACC 1 ACTGGGCCGAAGCCTTTTCATAAATCATACC * 69140464 ACTGGGCCGAAGCCTTTTCATAAATCATATC 1 ACTGGGCCGAAGCCTTTTCATAAATCATACC 69140495 ACTGGGCCGAAGCCTTT 1 ACTGGGCCGAAGCCTTT 69140512 ACTATAAACA Statistics Matches: 74, Mismatches: 4, Indels: 2 0.93 0.05 0.03 Matches are distributed among these distances: 31 69 0.93 32 5 0.07 ACGTcount: A:0.28, C:0.28, G:0.16, T:0.27 Consensus pattern (31 bp): ACTGGGCCGAAGCCTTTTCATAAATCATACC Found at i:69140750 original size:23 final size:24 Alignment explanation
Indices: 69140710--69140777 Score: 86 Period size: 23 Copynumber: 2.8 Consensus size: 24 69140700 CTCTTTTAAT * 69140710 AACTGGGGCAAAGACC-TTTCTGATA 1 AACTGGGGC-AAGCCCTTTTC-GATA 69140735 AACTGGGGCAA-CCCTTTTCGATA 1 AACTGGGGCAAGCCCTTTTCGATA 69140758 AACTGGGGCAGAGCCCTTTT 1 AACTGGGGCA-AGCCCTTTT 69140778 AGCACTTCCT Statistics Matches: 39, Mismatches: 1, Indels: 6 0.85 0.02 0.13 Matches are distributed among these distances: 23 16 0.41 24 7 0.18 25 16 0.41 ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25 Consensus pattern (24 bp): AACTGGGGCAAGCCCTTTTCGATA Found at i:69140753 original size:24 final size:25 Alignment explanation
Indices: 69140710--69140777 Score: 88 Period size: 25 Copynumber: 2.8 Consensus size: 25 69140700 CTCTTTTAAT * * 69140710 AACTGGGGCAAAGACC-TTTCTGATA 1 AACTGGGGCAGAGCCCTTTTC-GATA 69140735 AACTGGGGCA-A-CCCTTTTCGATA 1 AACTGGGGCAGAGCCCTTTTCGATA 69140758 AACTGGGGCAGAGCCCTTTT 1 AACTGGGGCAGAGCCCTTTT 69140778 AGCACTTCCT Statistics Matches: 39, Mismatches: 1, Indels: 6 0.85 0.02 0.13 Matches are distributed among these distances: 23 16 0.41 24 6 0.15 25 17 0.44 ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25 Consensus pattern (25 bp): AACTGGGGCAGAGCCCTTTTCGATA Found at i:69141617 original size:27 final size:27 Alignment explanation
Indices: 69141587--69141648 Score: 72 Period size: 27 Copynumber: 2.3 Consensus size: 27 69141577 GGGCATATTC 69141587 GTCATTTTACCATACAAGGG-TATTACG 1 GTCATTTTACCATACAAGGGCT-TTACG * * * 69141614 GTCACTTTACCCTACAGGGGCTTTACG 1 GTCATTTTACCATACAAGGGCTTTACG * 69141641 GTCTTTTT 1 GTCATTTT 69141649 TCCTATTCGA Statistics Matches: 29, Mismatches: 5, Indels: 2 0.81 0.14 0.06 Matches are distributed among these distances: 27 28 0.97 28 1 0.03 ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37 Consensus pattern (27 bp): GTCATTTTACCATACAAGGGCTTTACG Found at i:69141735 original size:27 final size:27 Alignment explanation
Indices: 69141705--69141790 Score: 77 Period size: 27 Copynumber: 3.1 Consensus size: 27 69141695 GTAAATCTAC 69141705 AAACTAAAGGTATTTCAGTAATTTTGT 1 AAACTAAAGGTATTTCAGTAATTTTGT * * 69141732 AAACCAATGGTATTTCTA-TAATTTT-T 1 AAACTAAAGGTATTTC-AGTAATTTTGT * * * 69141758 AGAAAGTCAAGGGTATTTCTGTAATTTTGT 1 --AAACT-AAAGGTATTTCAGTAATTTTGT 69141788 AAA 1 AAA 69141791 TTAGGGGTAT Statistics Matches: 47, Mismatches: 6, Indels: 11 0.73 0.09 0.17 Matches are distributed among these distances: 26 1 0.02 27 21 0.45 28 7 0.15 29 17 0.36 30 1 0.02 ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41 Consensus pattern (27 bp): AAACTAAAGGTATTTCAGTAATTTTGT Found at i:69141855 original size:54 final size:54 Alignment explanation
Indices: 69141793--69141951 Score: 196 Period size: 54 Copynumber: 2.9 Consensus size: 54 69141783 TTTGTAAATT * 69141793 AGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTTGGTAATTTCACAAACC 1 AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTCACAAACC ** * * 69141847 AGTTGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACT 1 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTCACAAACC * ** ** 69141901 AGGGGTATTTTGGTAATTCTATCTTA-TAGGGGTATTTCAGTAATTTCACAA 1 AGGGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTTGGTAATTTCACAA 69141952 TCGAGGGTAA Statistics Matches: 90, Mismatches: 13, Indels: 4 0.84 0.12 0.04 Matches are distributed among these distances: 54 86 0.96 55 4 0.04 ACGTcount: A:0.29, C:0.09, G:0.21, T:0.42 Consensus pattern (54 bp): AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTCACAAACC Done.