Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 225 of 410
Found at i:69141885 original size:81 final size:81
Alignment explanation
Indices: 69141770--69141918 Score: 230
Period size: 81 Copynumber: 1.8 Consensus size: 81
69141760 AAAGTCAAGG
** * *
69141770 GTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTTGGT
1 GTATTTCTGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGT
69141834 AATTTCACAAACCAGTT
65 AATTTCACAAACCAGTT
69141851 GTATTT-TGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGT
1 GTATTTCT-GTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGT
69141915 AATT
65 AATT
69141919 CTATCTTATA
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
80 1 0.02
81 59 0.95
82 2 0.03
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.44
Consensus pattern (81 bp):
GTATTTCTGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTA
ATTTCACAAACCAGTT
Found at i:69141937 original size:27 final size:27
Alignment explanation
Indices: 69141768--69141918 Score: 198
Period size: 27 Copynumber: 5.6 Consensus size: 27
69141758 AGAAAGTCAA
** *
69141768 GGGTATTTCT-GTAATTTTGTAAATTAG
1 GGGTATTT-TGGTAATTTTACAAACTAG
*
69141795 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
69141821 AGGGTATTTTGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
**
69141849 TTGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
69141876 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
69141903 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
69141919 CTATCTTATA
Statistics
Matches: 109, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
26 3 0.03
27 105 0.96
28 1 0.01
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.44
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:69141984 original size:27 final size:27
Alignment explanation
Indices: 69141950--69142144 Score: 257
Period size: 27 Copynumber: 7.2 Consensus size: 27
69141940 GTAATTTCAC
* *
69141950 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
*
69141977 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTATA
* *
69142004 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTTTATA
* *
69142031 AATAGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
*
69142058 AATCGAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
*
69142085 AATCGAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
** * *
69142112 AATTAAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTTTATA
69142139 AATCGA
1 AATCGA
69142145 AGGCATTTCA
Statistics
Matches: 150, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
26 1 0.01
27 148 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTATA
Found at i:69155948 original size:39 final size:40
Alignment explanation
Indices: 69155807--69155948 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
69155797 TATTCGGATG
69155807 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
*
69155847 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
* *
69155887 ATATCCGGGCTAAGTCCCGAAGGCAGTTGAGTGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTA-CT
*
69155927 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
69155949 TACTTGGTTT
Statistics
Matches: 96, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 17 0.18
40 79 0.82
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
Found at i:69163909 original size:40 final size:40
Alignment explanation
Indices: 69163772--69163952 Score: 163
Period size: 40 Copynumber: 4.5 Consensus size: 40
69163762 AATGATGTCC
* *
69163772 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAATCCG
* * * * * *
69163812 GACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAATCTG
1 GGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAATCCG
* *
69163852 GGCTAAG-CCTGAAGGCATTTGTGCAAGTTACTAAACCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCG
* * * *
69163891 GGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AATCCG
**
69163931 GGCTTCGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
69163953 AGCGAGTCGT
Statistics
Matches: 111, Mismatches: 25, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
39 31 0.28
40 71 0.64
41 9 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCG
Found at i:69181524 original size:42 final size:42
Alignment explanation
Indices: 69181421--69181579 Score: 120
Period size: 43 Copynumber: 3.7 Consensus size: 42
69181411 TACAATGCTG
* * * * * *
69181421 ACATCCCAGACGTGGTTTTACATGTAATCAAACATCGATGCCA
1 ACATCCCAGACATGGTCTTACACGAAATCAAA-GTCGATCCCA
*** * * * *
69181464 TTGTCCCAGATAGGGTCTTACACGAAATCAAATTTGATCCCA
1 ACATCCCAGACATGGTCTTACACGAAATCAAAGTCGATCCCA
** * * *
69181506 ATGTCCTAGACATGGTCTTACACGCAAAACAAAAGTCGATGCCA
1 ACATCCCAGACATGGTCTTACACG-AAATC-AAAGTCGATCCCA
*
69181550 ACATCCCAGACGTGGTCTTACACGAAATCA
1 ACATCCCAGACATGGTCTTACACGAAATCA
69181580 CATAACGAAA
Statistics
Matches: 89, Mismatches: 25, Indels: 5
0.75 0.21 0.04
Matches are distributed among these distances:
42 28 0.31
43 31 0.35
44 30 0.34
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (42 bp):
ACATCCCAGACATGGTCTTACACGAAATCAAAGTCGATCCCA
Found at i:69185865 original size:46 final size:46
Alignment explanation
Indices: 69185815--69185990 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
69185805 TGGTTGAGCA
69185815 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69185861 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
69185906 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69185954 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69185991 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:69185971 original size:93 final size:93
Alignment explanation
Indices: 69185812--69185983 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69185802 GGATGGTTGA
* *
69185812 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69185877 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
69185905 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69185970 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
69185984 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69193439 original size:46 final size:46
Alignment explanation
Indices: 69193389--69193564 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
69193379 TGGTTGAGCA
69193389 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69193435 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
69193480 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69193528 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69193565 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:69193545 original size:93 final size:93
Alignment explanation
Indices: 69193386--69193557 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69193376 GGATGGTTGA
* *
69193386 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69193451 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
69193479 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69193544 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
69193558 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69197552 original size:29 final size:29
Alignment explanation
Indices: 69197506--69197561 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
69197496 AAAAAGTCGA
*
69197506 AATTTTACCTCAATTGGAATAATTTGAAG
1 AATTTTACCTCAACTGGAATAATTTGAAG
69197535 AATTTTACCTCAACTGGAATAATTTGA
1 AATTTTACCTCAACTGGAATAATTTGA
69197562 CGAGTTTAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (29 bp):
AATTTTACCTCAACTGGAATAATTTGAAG
Found at i:69208367 original size:40 final size:40
Alignment explanation
Indices: 69208323--69208544 Score: 211
Period size: 40 Copynumber: 5.5 Consensus size: 40
69208313 GCCACTCGTT
* * *
69208323 CAAATACCTTCGGGACATGGCCCGG-TTATAGTAGCTCACA
1 CAAATGCCTTCGGGACATAGCCCGGATT-TAGTAACTCACA
* * *
69208363 CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACA
* * *
69208403 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CATAGCCCGGATTTAGTAACTCACA
* * *
69208443 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CATAGCCCGGATTTAGTAACTCACA
* * * *
69208483 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAGCCCGGATTTAGTAACTCA-CA
*
69208524 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACATAGCC
69208545 TGGACATCAT
Statistics
Matches: 166, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
39 3 0.02
40 152 0.92
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACA
Found at i:69208445 original size:80 final size:80
Alignment explanation
Indices: 69208351--69208542 Score: 300
Period size: 80 Copynumber: 2.4 Consensus size: 80
69208341 GGCCCGGTTA
* *
69208351 TAGTAGCTCACACAAATGCCTTCGGGACTTA-TCCCGGATTTAGTAACTCGCACAAATGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAGT-CCGGATTTAGTAACTCGCACAAATGCCTTCG
69208415 GATCTTAGTCCGGATT
65 GATCTTAGTCCGGATT
69208431 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCG
69208495 GATCTTAGTCCGGATT
65 GATCTTAGTCCGGATT
* *
69208511 TAGTCACTTAGCACAAA-GCCTTCGGGACTTAG
1 TAGTAAC-TCGCACAAATGCCTTCGGGACTTAG
69208543 CCTGGACATC
Statistics
Matches: 104, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
79 3 0.03
80 89 0.86
81 12 0.12
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGG
ATCTTAGTCCGGATT
Found at i:69220533 original size:40 final size:40
Alignment explanation
Indices: 69220488--69220653 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
69220478 CGGAATATAA
69220488 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
69220528 CCGGATAGAAT-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
69220567 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
69220607 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
69220646 CCGGATAT
1 CCGGATAT
69220654 CATTCAATTT
Statistics
Matches: 104, Mismatches: 20, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
38 1 0.01
39 44 0.42
40 59 0.57
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69220552 original size:39 final size:40
Alignment explanation
Indices: 69220504--69220613 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 40
69220494 ATAATCACGT
* *
69220504 GCACAAATGCCTTCGGGTCTTAGCCCGGATAG-A-ATACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGTAGACACTA
*
69220543 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGTAGACACTA
*
69220583 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
69220614 TAATTTCCAG
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
38 1 0.02
39 32 0.52
40 29 0.47
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.24
Consensus pattern (40 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGTAGACACTA
Found at i:69224584 original size:40 final size:40
Alignment explanation
Indices: 69224529--69224668 Score: 138
Period size: 40 Copynumber: 3.5 Consensus size: 40
69224519 GGCTGTCACA
*
69224529 TCGGGTCTTAGCCCGGATATAATTACTAGCATAAATGTCC
1 TCGGGACTTAGCCCGGATATAATTACTAGCATAAATGTCC
* *** * *
69224569 TCGGGACTTAGCCCGGATGTAGCCACTAGCACAATTG-CC
1 TCGGGACTTAGCCCGGATATAATTACTAGCATAAATGTCC
* * * * * * *
69224608 TTCGGGTCTTAACCCGGATATAATTTCCAGCATTAACGTCT
1 -TCGGGACTTAGCCCGGATATAATTACTAGCATAAATGTCC
69224649 TCGGGACTTAGCCCGGATAT
1 TCGGGACTTAGCCCGGATAT
69224669 CATTCAATTT
Statistics
Matches: 76, Mismatches: 22, Indels: 4
0.75 0.22 0.04
Matches are distributed among these distances:
39 2 0.03
40 73 0.96
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGATATAATTACTAGCATAAATGTCC
Found at i:69229739 original size:15 final size:15
Alignment explanation
Indices: 69229690--69229747 Score: 64
Period size: 15 Copynumber: 3.9 Consensus size: 15
69229680 GAGATGGCAT
69229690 GAAATCCAAGATAAA
1 GAAATCCAAGATAAA
* * *
69229705 GAAGTCCAAAACAATA
1 GAAATCCAAGATAA-A
69229721 -AAATCCAAGATAAA
1 GAAATCCAAGATAAA
*
69229735 GAAATCAAAGATA
1 GAAATCCAAGATA
69229748 CAATATCATA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
14 1 0.03
15 32 0.94
16 1 0.03
ACGTcount: A:0.60, C:0.14, G:0.12, T:0.14
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:69231310 original size:94 final size:94
Alignment explanation
Indices: 69231144--69231332 Score: 342
Period size: 94 Copynumber: 2.0 Consensus size: 94
69231134 CCCGTACCTG
69231144 AGGCCGGGATAAGGTACGAGGCATTATCAGACATAAACATACACATACATGTAAAATCGGGTGAT
1 AGGCCGGGATAAGGTACGAGGCATTATCAGACATAAACATACACATACATGTAAAATCGGGTGAT
* *
69231209 AATATTTTAACTAATTCAGAAACATTCAA
66 AAGATTTTAACTAATTCAAAAACATTCAA
* *
69231238 AGGCCGGGATAAGGTACGAGGCATTATCGGACTTAAACATACACATACATGTAAAATCGGGTGAT
1 AGGCCGGGATAAGGTACGAGGCATTATCAGACATAAACATACACATACATGTAAAATCGGGTGAT
69231303 AAGATTTTAACTAATTCAAAAACATTCAA
66 AAGATTTTAACTAATTCAAAAACATTCAA
69231332 A
1 A
69231333 CACATGTATA
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 91 1.00
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.24
Consensus pattern (94 bp):
AGGCCGGGATAAGGTACGAGGCATTATCAGACATAAACATACACATACATGTAAAATCGGGTGAT
AAGATTTTAACTAATTCAAAAACATTCAA
Found at i:69231536 original size:19 final size:19
Alignment explanation
Indices: 69231488--69231537 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
69231478 GCATGGTCAC
*
69231488 ACACGCCCGTGTGGCTCGG
1 ACACGCCCGTGTGGCTCAG
* *
69231507 ACACACTCGTGTGGCTCAG
1 ACACGCCCGTGTGGCTCAG
69231526 ACACGCCCGTGT
1 ACACGCCCGTGT
69231538 CCTCAACCCA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.16, C:0.36, G:0.30, T:0.18
Consensus pattern (19 bp):
ACACGCCCGTGTGGCTCAG
Found at i:69237286 original size:25 final size:24
Alignment explanation
Indices: 69237253--69237303 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
69237243 TGGGTAAATG
*
69237253 TTATGAATTTATTAAATGAATGAATT
1 TTATGAATTAATTAAAT-AATG-ATT
69237279 TTAT-AATTAATTAAATAATGATT
1 TTATGAATTAATTAAATAATGATT
69237302 TT
1 TT
69237304 CAAATATACT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 5 0.21
24 4 0.17
25 11 0.46
26 4 0.17
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (24 bp):
TTATGAATTAATTAAATAATGATT
Found at i:69240508 original size:24 final size:24
Alignment explanation
Indices: 69240481--69240526 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
69240471 TATAATATGG
* * *
69240481 AAATGACTATTTTGCCCCTAGGTA
1 AAATGACCATTATACCCCTAGGTA
69240505 AAATGACCATTATACCCCTAGG
1 AAATGACCATTATACCCCTAGG
69240527 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (24 bp):
AAATGACCATTATACCCCTAGGTA
Found at i:69240697 original size:25 final size:25
Alignment explanation
Indices: 69240637--69240720 Score: 100
Period size: 26 Copynumber: 3.4 Consensus size: 25
69240627 AGGAAGTGCA
**
69240637 AAAAGGGCTTTTGCCCCAGTTTACC
1 AAAAGGGCTTTTGCCCCAGTTTTTC
69240662 GAAAAGGGCTTTTGCCCCAGTTTTTC
1 -AAAAGGGCTTTTGCCCCAGTTTTTC
* *
69240688 AAAAGGGC-TTTGCCCTAGTTATT-
1 AAAAGGGCTTTTGCCCCAGTTTTTC
69240711 AAAAGAGGCT
1 AAAAG-GGCT
69240721 AGGCCTCTAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 5 0.10
24 16 0.31
25 8 0.15
26 23 0.44
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTTTC
Found at i:69240810 original size:38 final size:38
Alignment explanation
Indices: 69240759--69240850 Score: 175
Period size: 38 Copynumber: 2.4 Consensus size: 38
69240749 ATGCTGCCAG
69240759 TGGAGAGTTTGGTTGGGTGGGTTGAGTTATTCCCCACA
1 TGGAGAGTTTGGTTGGGTGGGTTGAGTTATTCCCCACA
69240797 TGGAGAGTTTGGTTGGGTGGGTTGAGTTATTCCCCACA
1 TGGAGAGTTTGGTTGGGTGGGTTGAGTTATTCCCCACA
*
69240835 TGGAGAGCTTGGTTGG
1 TGGAGAGTTTGGTTGG
69240851 TACAGGTGAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.15, C:0.12, G:0.39, T:0.34
Consensus pattern (38 bp):
TGGAGAGTTTGGTTGGGTGGGTTGAGTTATTCCCCACA
Found at i:69249355 original size:40 final size:40
Alignment explanation
Indices: 69249295--69249477 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
69249285 TATTCGAATG
* *
69249295 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * * *
69249335 ATATCTGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* *
69249375 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
69249414 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
69249454 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
69249478 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 35 0.28
40 86 0.70
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:69249496 original size:79 final size:80
Alignment explanation
Indices: 69249295--69249513 Score: 259
Period size: 79 Copynumber: 2.8 Consensus size: 80
69249285 TATTCGAATG
* * * * *
69249295 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCTGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAG-TCCCGAAGGC
* *
69249359 ATTTGTGCGAGTTGCT
65 ATTTATGCGAGTTGCC
*
69249375 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
*
69249439 TTTATGCTAG-TGACC
66 TTTATGCGAGTTG-CC
* * ** *
69249454 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAG
69249514 ATACTTGGGT
Statistics
Matches: 121, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
78 25 0.21
79 64 0.53
80 32 0.26
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTATGCGAGTTGCC
Found at i:69257543 original size:40 final size:40
Alignment explanation
Indices: 69257483--69257664 Score: 235
Period size: 40 Copynumber: 4.5 Consensus size: 40
69257473 TATTCGAATG
*
69257483 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
69257523 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
69257563 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
69257603 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
69257643 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGATCCGAAG
69257665 TCCTTGTGCG
Statistics
Matches: 124, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 120 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:69257616 original size:80 final size:80
Alignment explanation
Indices: 69257483--69257664 Score: 260
Period size: 80 Copynumber: 2.3 Consensus size: 80
69257473 TATTCGAATG
* * *
69257483 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
69257547 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* *
69257563 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
69257628 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
69257643 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
69257665 TCCTTGTGCG
Statistics
Matches: 92, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 89 0.97
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:69260151 original size:20 final size:20
Alignment explanation
Indices: 69260126--69260172 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
69260116 ATTCTGATAT
69260126 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
69260146 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
69260166 ACATGAT
1 ACATGAT
69260173 GTATTCATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:69260290 original size:24 final size:24
Alignment explanation
Indices: 69260220--69260351 Score: 158
Period size: 24 Copynumber: 5.4 Consensus size: 24
69260210 AGGAAGTGCA
**
69260220 AAAAGGGCTTTTGCCCCAGTTTACC
1 AAAAGGGC-TTTGCCCCAGTTTTTC
**
69260245 GAAAAGGGCTTTTGCCTTAGTTTTTC
1 -AAAAGGGC-TTTGCCCCAGTTTTTC
69260271 AAAAGGGCTTTGCCCCAGTTTTTC
1 AAAAGGGCTTTGCCCCAGTTTTTC
69260295 AAAAGGGCTTTGCCCCAGTTTTTC
1 AAAAGGGCTTTGCCCCAGTTTTTC
* * *
69260319 AAAATGGCTTTGCCCTAGTTATT-
1 AAAAGGGCTTTGCCCCAGTTTTTC
69260342 AAAAGAGGCT
1 AAAAG-GGCT
69260352 AGTCCTCCAG
Statistics
Matches: 95, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.04
24 62 0.65
25 8 0.08
26 21 0.22
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.33
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTTTC
Found at i:69268040 original size:40 final size:40
Alignment explanation
Indices: 69267981--69268188 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
69267971 CAATTGAATG
* * * *
69267981 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
69268021 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
69268061 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
69268101 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
69268141 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
69268181 ATATCCGG
1 ATATCCGG
69268189 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:69268119 original size:80 final size:80
Alignment explanation
Indices: 69267982--69268188 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
69267972 AATTGAATGA
* * ** * * *
69267982 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
69268047 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
69268060 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
69268125 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
69268142 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
69268189 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:69269732 original size:24 final size:24
Alignment explanation
Indices: 69269680--69269918 Score: 342
Period size: 24 Copynumber: 10.0 Consensus size: 24
69269670 GCTTTATCAT
* *
69269680 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
69269705 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTG
* *
69269729 ATAACTGGGGCATAAGCTC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
*
69269752 ATAATTGGGTG--TAAGCCCTTTTG
1 ATAACTGGG-GCATAAGCCCTTTTG
69269775 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
69269799 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
69269823 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
69269847 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
* *
69269871 ATAACTGGGGCATAAGACCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTG
69269895 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
69269919 CACTTCCTCC
Statistics
Matches: 195, Mismatches: 14, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
22 7 0.04
23 22 0.11
24 154 0.79
25 12 0.06
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:69269989 original size:9 final size:9
Alignment explanation
Indices: 69269975--69270031 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
69269965 ATCTCGTGTG
69269975 CATATCATA
1 CATATCATA
*
69269984 CATATCATGTG
1 CATATCA--TA
69269995 CATATCATA
1 CATATCATA
* *
69270004 CATGTCATGTG
1 CATATCA--TA
69270015 CATATCATA
1 CATATCATA
69270024 CATATCAT
1 CATATCAT
69270032 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:69269994 original size:20 final size:20
Alignment explanation
Indices: 69269971--69270033 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
69269961 GAACATCTCG
69269971 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
69269991 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
69270011 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
69270031 TGT
1 TGT
69270034 TTATCAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:69271337 original size:27 final size:27
Alignment explanation
Indices: 69271275--69271352 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
69271265 GGGCATATTC
69271275 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
69271302 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
69271329 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
69271353 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:69271541 original size:54 final size:54
Alignment explanation
Indices: 69271483--69271622 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
69271473 TGTAAATCAG
69271483 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
* * * * *
69271537 GGGTATTTTGATAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTCACAAACCAA
* ** *
69271591 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
69271623 AAATAGTAAT
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 71 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
Found at i:69271620 original size:27 final size:27
Alignment explanation
Indices: 69271370--69271676 Score: 156
Period size: 27 Copynumber: 11.3 Consensus size: 27
69271360 TTTCATCCTA
* * * * * *
69271370 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * * *
69271397 CAAGGGTATTTCAGTAATTTTGTTAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *
69271424 CAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-T
* *
69271453 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAT
* * *
69271480 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
** ** * * *
69271507 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
69271534 CAAGGGTATTTT-GATAATTTTACAAA-
1 CAAGGGTATTTTAG-TAATTTTATAAAT
* * *
69271560 CTAGGGGTATTTTGGTAATTTTACAAA-
1 C-AAGGGTATTTTAGTAATTTTATAAAT
*
69271587 CTAAGGGTATTTTAGTAATTTTGTAAAT
1 C-AAGGGTATTTTAGTAATTTTATAAAT
* *** * *
69271615 CGAGGGTAAAATAGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
*** *
69271642 CAAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
69271669 CGAGGGTA
1 CAAGGGTA
69271677 AAACTGTAAT
Statistics
Matches: 226, Mismatches: 45, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
26 3 0.01
27 193 0.85
28 15 0.07
29 15 0.07
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAT
Found at i:69271677 original size:27 final size:27
Alignment explanation
Indices: 69271601--69271938 Score: 416
Period size: 27 Copynumber: 12.6 Consensus size: 27
69271591 GGGTATTTTA
* **
69271601 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
69271628 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
69271655 GTAATTCTATAAATCGAGGGTAAAACT
1 GTAATTCTGTAAATCGAGGGTAAAACG
69271682 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
69271709 GTAATTCTGTACGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
69271736 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* *
69271763 GTAATTATGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
69271790 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
69271817 GTAATTCTGTAAA-CTGA-GGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
69271843 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * **
69271870 ATAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
69271897 GTAATTCTAT-AACCTGA-GGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
69271923 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
69271939 GGAGTACTTT
Statistics
Matches: 273, Mismatches: 31, Indels: 15
0.86 0.10 0.05
Matches are distributed among these distances:
26 46 0.17
27 226 0.83
28 1 0.00
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:69281060 original size:38 final size:38
Alignment explanation
Indices: 69281012--69281167 Score: 240
Period size: 38 Copynumber: 4.1 Consensus size: 38
69281002 TCGAAATATG
*
69281012 ATATCCGGGTTAAATCCTGCAGGCTTCGTACTGGTAAT
1 ATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAAT
69281050 ATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAAT
** *
69281088 ATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTATT
1 ATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAAT
* * * *
69281126 ATATCCGGGCTAAATCCTGCAGGCCTAGTGCTGGTATT
1 ATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAAT
69281164 ATAT
1 ATAT
69281168 TTGGGCCTTT
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 109 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAAT
Found at i:69286438 original size:40 final size:40
Alignment explanation
Indices: 69286213--69286410 Score: 296
Period size: 40 Copynumber: 5.0 Consensus size: 40
69286203 TCGAATGATG
* * *
69286213 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
69286253 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
69286293 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
69286333 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
69286373 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
69286411 TAACCGGGCT
Statistics
Matches: 150, Mismatches: 4, Indels: 8
0.93 0.02 0.05
Matches are distributed among these distances:
39 1 0.01
40 138 0.92
41 11 0.07
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69286452 original size:40 final size:40
Alignment explanation
Indices: 69286266--69286457 Score: 121
Period size: 40 Copynumber: 4.8 Consensus size: 40
69286256 GGACTAAGAT
** *
69286266 CCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGACTAAGAT-
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGA-TAAG-TC
** *
69286306 CCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGACTAAGAT-
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGA-TAAG-TC
** *
69286346 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGATAAGTC
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGATAAGTC
** * *
69286386 CCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
* *
69286426 CCGAAGGTATTTGAACGAG-TAGCTATATCCGG
1 CCGAAGGCATTTGAACGAGCTA-CTATAACCGG
69286458 TTAAACTCCG
Statistics
Matches: 141, Mismatches: 7, Indels: 8
0.90 0.04 0.05
Matches are distributed among these distances:
39 3 0.02
40 133 0.94
41 5 0.04
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
Found at i:69286457 original size:120 final size:120
Alignment explanation
Indices: 69286213--69286445 Score: 289
Period size: 120 Copynumber: 1.9 Consensus size: 120
69286203 TCGAATGATG
*
69286213 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
* **
69286278 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAA
* *
69286333 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGA-TAAG-TCCCGAAGGC
1 TCCGGACTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAAATCC-GGACTAAGAT-CCGAAGGC
* * *
69286394 ATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAGT
62 ATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGT
69286446 AGCTATATCC
Statistics
Matches: 98, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
119 2 0.02
120 83 0.85
121 13 0.13
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAA
Found at i:69294103 original size:40 final size:41
Alignment explanation
Indices: 69294066--69294290 Score: 270
Period size: 40 Copynumber: 5.7 Consensus size: 41
69294056 GCTACTCGTT
* *
69294066 CAAATTCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATT-TAGTAACTCGCA
* *
69294106 CAAATGCCTTCGGG--CTTAGCCCGGAATTAGTAACTCGTA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
69294145 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
69294185 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * *
69294225 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAAC-TCGCA
*
69294266 CAAA-GCCTTCGGGA-CTTAGCTCGGA
1 CAAATGCCTTCGGGATCTTAGCCCGGA
69294291 CATCATTCGA
Statistics
Matches: 168, Mismatches: 12, Indels: 10
0.88 0.06 0.05
Matches are distributed among these distances:
38 2 0.01
39 31 0.18
40 124 0.74
41 11 0.07
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:69300472 original size:93 final size:93
Alignment explanation
Indices: 69300360--69300531 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69300350 GCCCATAAGT
* *
69300360 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69300425 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
69300453 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69300518 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
69300532 AACCATCCTA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69300527 original size:46 final size:46
Alignment explanation
Indices: 69300352--69300527 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
69300342 TGTAACCCGC
* * *
69300352 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
69300398 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
69300448 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
69300491 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69300528 TGCCAACCAT
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:69302933 original size:30 final size:30
Alignment explanation
Indices: 69302889--69302977 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
69302879 CAAAGATAAC
69302889 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
69302918 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
69302948 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
69302978 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:69302937 original size:15 final size:15
Alignment explanation
Indices: 69302889--69302968 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
69302879 CAAAGATAAC
*
69302889 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
69302903 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
69302918 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
69302933 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
69302948 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
69302963 AAGAAA
1 AAGAAA
69302969 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:69302977 original size:15 final size:15
Alignment explanation
Indices: 69302900--69302977 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
69302890 AGAAAACCGA
69302900 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
69302915 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
69302929 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
69302944 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
69302960 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
69302975 ATA
1 ATA
69302978 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:69306039 original size:93 final size:93
Alignment explanation
Indices: 69305927--69306097 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
69305917 GCCCATAAGT
* *
69305927 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69305992 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
69306020 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69306085 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69306098 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69306094 original size:46 final size:46
Alignment explanation
Indices: 69305919--69306094 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
69305909 TGTAACCCGC
* * *
69305919 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
69305965 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
69306015 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
69306058 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69306095 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:69309627 original size:40 final size:39
Alignment explanation
Indices: 69309578--69309821 Score: 215
Period size: 40 Copynumber: 6.1 Consensus size: 39
69309568 CAAAATTTAA
**
69309578 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CATAGC
* *
69309618 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGCATAGC
* * *
69309657 CCGGA-ATTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGG-GCATAGC
* * * * *
69309697 CCGGATTTAGTAACTCACACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGG-GCATAGC
* * * * *
69309737 CCGGATTTAGTAACTCACACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGG-GCATAGC
* * *
69309777 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGG-CATAGC
69309817 CCGGA
1 CCGGA
69309822 CATCATTCGA
Statistics
Matches: 183, Mismatches: 15, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 1 0.01
39 35 0.19
40 140 0.77
41 7 0.04
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGCATAGC
Found at i:69309767 original size:80 final size:79
Alignment explanation
Indices: 69309597--69309821 Score: 294
Period size: 80 Copynumber: 2.8 Consensus size: 79
69309587 GCTACTCGTT
* * * *
69309597 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCG
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCACACAAATGCCTTCGGACTTAGCCCG
*
69309660 GAATTAGTAACTCGCA
64 GAATTAGTAACTCACA
*
69309676 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCACACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCACACAAATGCCTTCGGA-CTTAGCCCGG
*
69309741 ATTTAGTAACTCACA
65 AATTAGTAACTCACA
* * *
69309756 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCA-CACAAATGCCTTC-GGACTTAGCCCG
69309820 GA
64 GA
69309822 CATCATTCGA
Statistics
Matches: 130, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
78 3 0.02
79 43 0.33
80 75 0.58
81 9 0.07
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCACACAAATGCCTTCGGACTTAGCCCGGA
ATTAGTAACTCACA
Found at i:69311442 original size:27 final size:27
Alignment explanation
Indices: 69311412--69311657 Score: 209
Period size: 27 Copynumber: 9.1 Consensus size: 27
69311402 TACCTTAATC
* *
69311412 AAAATACCCTCAGTTTGTAAAAATACA
1 AAAATACCCTCAGTTTGTAAAATTACT
*
69311439 AAAATACCC-CTAGTTTGTAAAATTACC
1 AAAATACCCTC-AGTTTGTAAAATTACT
* *
69311466 GAAATACCCTCTGTTTGTAAAATTAC-
1 AAAATACCCTCAGTTTGTAAAATTACT
** * *
69311492 CGAATACCCCCCAATTTGTAAAATTACT
1 AAAATA-CCCTCAGTTTGTAAAATTACT
*
69311520 AAAATACCC-CTGATTTGT-AAATTACT
1 AAAATACCCTCAG-TTTGTAAAATTACT
* * *
69311546 AAAATACCC-CCGAATTGTAAAATTATT
1 AAAATACCCTCAG-TTTGTAAAATTACT
* *
69311573 AAAATACCATC-GATTTGTAAAATTACC
1 AAAATACCCTCAG-TTTGTAAAATTACT
*
69311600 AAAATACCTTCAGTTTGTAAAATTACT
1 AAAATACCCTCAGTTTGTAAAATTACT
* * *
69311627 GAAATACCC-CTGTAGTGTAAAATTACCT
1 AAAATACCCTCAGT-TTGTAAAATTA-CT
69311655 AAA
1 AAA
69311658 TGCCCTTATA
Statistics
Matches: 182, Mismatches: 27, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
26 33 0.18
27 138 0.76
28 11 0.06
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATACCCTCAGTTTGTAAAATTACT
Found at i:69311460 original size:26 final size:27
Alignment explanation
Indices: 69311412--69311691 Score: 195
Period size: 27 Copynumber: 10.4 Consensus size: 27
69311402 TACCTTAATC
* *
69311412 AAAATA-CCCTCAGTTTGTAAAAATACA
1 AAAATACCCCT-AGTTTGTAAAATTACT
*
69311439 AAAATACCCCTAGTTTGTAAAATTACC
1 AAAATACCCCTAGTTTGTAAAATTACT
*
69311466 GAAATACCCTCT-GTTTGTAAAATTAC-
1 AAAATACCC-CTAGTTTGTAAAATTACT
** * *
69311492 CGAATACCCCCCAATTTGTAAAATTACT
1 AAAATA-CCCCTAGTTTGTAAAATTACT
69311520 AAAATACCCCT-GATTTGT-AAATTACT
1 AAAATACCCCTAG-TTTGTAAAATTACT
* * *
69311546 AAAATACCCC-CGAATTGTAAAATTATT
1 AAAATACCCCTAG-TTTGTAAAATTACT
* * *
69311573 AAAATA-CCATCGATTTGTAAAATTACC
1 AAAATACCCCTAG-TTTGTAAAATTACT
*
69311600 AAAATA-CCTTCAGTTTGTAAAATTACT
1 AAAATACCCCT-AGTTTGTAAAATTACT
* *
69311627 GAAATACCCCT-GTAGTGTAAAATTACCT
1 AAAATACCCCTAGT-TTGTAAAATTA-CT
* * * *
69311655 -AAATGCCCTTA-TAGTGTAAAATTACC
1 AAAATACCCCTAGT-TTGTAAAATTACT
*
69311681 GAAATACCCCT
1 AAAATACCCCT
69311692 GTAGGGTAAA
Statistics
Matches: 210, Mismatches: 28, Indels: 30
0.78 0.10 0.11
Matches are distributed among these distances:
26 34 0.16
27 160 0.76
28 16 0.08
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATACCCCTAGTTTGTAAAATTACT
Found at i:69311475 original size:54 final size:54
Alignment explanation
Indices: 69311413--69311693 Score: 247
Period size: 54 Copynumber: 5.2 Consensus size: 54
69311403 ACCTTAATCA
* * * *
69311413 AAATACCCTCAGTTTGTAAAAATACAAAAATACCCCTAGTTTGTAAAATTACCG
1 AAATACCCTCTGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTG
* * * *
69311467 AAATACCCTCTGTTTGTAAAATTACC-GAATACCCCCCAATTTGTAAAATTACTA
1 AAATACCCTCTGTTTGTAAAATTACCAAAATA-CCCCTAGTTTGTAAAATTACTG
* * * * *
69311521 AAATACCC-CTGATTTGT-AAATTACTAAAATACCCC-CGAATTGTAAAATTATTA
1 AAATACCCTCTG-TTTGTAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACTG
* *
69311574 AAATACCATC-GATTTGTAAAATTACCAAAATA-CCTTCAGTTTGTAAAATTACTG
1 AAATACCCTCTG-TTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACTG
* * * * * *
69311628 AAATACCC-CTGTAGTGTAAAATTACCTAAATGCCCTTA-TAGTGTAAAATTACCG
1 AAATACCCTCTGT-TTGTAAAATTACCAAAATACCCCTAGT-TTGTAAAATTACTG
69311682 AAATACCC-CTGT
1 AAATACCCTCTGT
69311694 AGGGTAAAAT
Statistics
Matches: 188, Mismatches: 27, Indels: 24
0.79 0.11 0.10
Matches are distributed among these distances:
53 50 0.27
54 133 0.71
55 5 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATACCCTCTGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTG
Found at i:69311566 original size:107 final size:108
Alignment explanation
Indices: 69311453--69311693 Score: 262
Period size: 107 Copynumber: 2.2 Consensus size: 108
69311443 TACCCCTAGT
*
69311453 TTGTAAAATTACCGAAATACCCTCTGTTTGTAAAATTACC-GAATACCCCCCAATTTGTAAAATT
1 TTGTAAAATTACCGAAATACCCTCTGTTTGTAAAATTACCAAAATA-CCCCCAATTTGTAAAATT
*
69311517 ACTAAAATACCCCTG-ATTTGT-AAATTA-CTAAAATACCCCCGA-A
65 ACTAAAATACCCCTGTA-GTGTAAAATTACCT-AAAT-CCCCCGATA
*** * ** *
69311560 TTGTAAAATTATTAAAATACCATC-GATTTGTAAAATTACCAAAATACCTTCAGTTTGTAAAATT
1 TTGTAAAATTACCGAAATACCCTCTG-TTTGTAAAATTACCAAAATACCCCCAATTTGTAAAATT
* * **
69311624 ACTGAAATACCCCTGTAGTGTAAAATTACCTAAATGCCCTTATA
65 ACTAAAATACCCCTGTAGTGTAAAATTACCTAAATCCCCCGATA
*
69311668 GTGTAAAATTACCGAAATACCC-CTGT
1 TTGTAAAATTACCGAAATACCCTCTGT
69311694 AGGGTAAAAT
Statistics
Matches: 109, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
106 1 0.01
107 72 0.66
108 34 0.31
109 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (108 bp):
TTGTAAAATTACCGAAATACCCTCTGTTTGTAAAATTACCAAAATACCCCCAATTTGTAAAATTA
CTAAAATACCCCTGTAGTGTAAAATTACCTAAATCCCCCGATA
Found at i:69311673 original size:81 final size:79
Alignment explanation
Indices: 69311413--69311690 Score: 258
Period size: 81 Copynumber: 3.4 Consensus size: 79
69311403 ACCTTAATCA
* * * *
69311413 AAATACCCTCAGTTTGTAAAAATACAAAAATACCCCTAGTTTGTAAAATTACCGAAATACCCTCT
1 AAATACCCT-AATTTGTAAAATTACCAAAATACCCC-AGTTTGTAAAATTACTGAAATACCC-CT
69311478 GT-TTGTAAAATTACC-
63 GTATTGTAAAATTACCT
* * * * * *
69311493 GAATACCCCCCAATTTGTAAAATTACTAAAATACCCCTGATTTGT-AAATTACTAAAATACCCCC
1 AAATA--CCCTAATTTGTAAAATTACCAAAATACCCCAG-TTTGTAAAATTACTGAAATACCCCT
* *
69311557 GAATTGTAAAATTA-TT
63 GTATTGTAAAATTACCT
* * *
69311573 AAAATACCATCGATTTGTAAAATTACCAAAATACCTTCAGTTTGTAAAATTACTGAAATACCCCT
1 -AAATACCCT-AATTTGTAAAATTACCAAAATACC-CCAGTTTGTAAAATTACTGAAATACCCCT
*
69311638 GTAGTGTAAAATTACCT
63 GTATTGTAAAATTACCT
* * * *
69311655 AAATGCCCTTATAGTGTAAAATTACCGAAATACCCC
1 AAATACCCTAAT-TTGTAAAATTACCAAAATACCCC
69311691 TGTAGGGTAA
Statistics
Matches: 158, Mismatches: 29, Indels: 22
0.76 0.14 0.11
Matches are distributed among these distances:
79 4 0.03
80 61 0.39
81 89 0.56
82 4 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (79 bp):
AAATACCCTAATTTGTAAAATTACCAAAATACCCCAGTTTGTAAAATTACTGAAATACCCCTGTA
TTGTAAAATTACCT
Found at i:69312151 original size:27 final size:27
Alignment explanation
Indices: 69312121--69312195 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 27
69312111 TTTCCAATTG
*
69312121 TATTTACTTGTGGCTATGTGCCTATCA
1 TATTTACTTGTGGCTATGTGCCGATCA
* * *
69312148 TATTTA-TTGATGACTCTGTGTCGATCA
1 TATTTACTTG-TGGCTATGTGCCGATCA
***
69312175 TATTTACCCATGGCTATGTGC
1 TATTTACTTGTGGCTATGTGC
69312196 TAATTATATT
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
26 3 0.08
27 33 0.92
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.43
Consensus pattern (27 bp):
TATTTACTTGTGGCTATGTGCCGATCA
Found at i:69313257 original size:54 final size:53
Alignment explanation
Indices: 69313111--69313377 Score: 244
Period size: 54 Copynumber: 5.0 Consensus size: 53
69313101 TAAAACCTTA
* *
69313111 ATTTGTAAAATTACAGAAATACCCCT-AGTTTGTAAAATTACCAAAATA-CCCTC
1 ATTTGTAAAATTAC-GAAATACCCCTGA-TTTGTAAAATTACTAAAATACCCCTG
* * * * * *
69313164 AGTTTGAAAAATTACCAAATACCCGTAATATGTAAAATTACTGAAATACCCCTG
1 A-TTTGTAAAATTACGAAATACCCCTGATTTGTAAAATTACTAAAATACCCCTG
* *
69313218 ATTTGTAAAATTATCGAAATACCCCCGATTTGTAAAATTATTAAAATA--CCT-
1 ATTTGTAAAATTA-CGAAATACCCCTGATTTGTAAAATTACTAAAATACCCCTG
*
69313269 ATTTTGTAAAATTACCGAAATACCCCTGATTTGTAAAATTATTAAAATACCCCTG
1 A-TTTGTAAAATTA-CGAAATACCCCTGATTTGTAAAATTACTAAAATACCCCTG
* * * * *
69313324 -TAGTGTAAAATTACCTAAATACCCTTG-TAGTGTAAAATTA-TCGAAATACCCCTG
1 AT-TTGTAAAATTA-CGAAATACCCCTGAT-TTGTAAAATTACT-AAAATACCCCTG
69313378 TAGGGCAAAA
Statistics
Matches: 181, Mismatches: 22, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
51 1 0.01
52 48 0.27
53 41 0.23
54 91 0.50
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (53 bp):
ATTTGTAAAATTACGAAATACCCCTGATTTGTAAAATTACTAAAATACCCCTG
Found at i:69313358 original size:106 final size:106
Alignment explanation
Indices: 69313114--69313373 Score: 285
Period size: 106 Copynumber: 2.4 Consensus size: 106
69313104 AACCTTAATT
* *
69313114 TGTAAAATTACAGAAATACCCCTAGT-TTGTAAAATTACCAAAATACCCTCAGTTTGAAAAATTA
1 TGTAAAATTACCGAAATA-CCCTAGTATTGTAAAATTATCAAAATA-CCTCAGTTTGAAAAATTA
* * *
69313178 CCAAATACCCGTAATATGTAAAATTACTGAAATACCCCTGATT
64 CCAAATACCCCTAATATGTAAAATTACTAAAATACCCCTGATG
* ** * * *
69313221 TGTAAAATTATCGAAATACCCCCG-ATTTGTAAAATTATTAAAATACCT-ATTTTGTAAAATTAC
1 TGTAAAATTACCGAAATACCCTAGTA-TTGTAAAATTATCAAAATACCTCAGTTTGAAAAATTAC
* * *
69313284 CGAAATACCCCTGATTTGTAAAATTATTAAAATACCCCTG-TAG
65 C-AAATACCCCTAATATGTAAAATTACTAAAATACCCCTGAT-G
* * * *
69313327 TGTAAAATTACCTAAATACCCTTGTAGTGTAAAATTATCGAAATACC
1 TGTAAAATTACCGAAATACCCTAGTATTGTAAAATTATCAAAATACC
69313374 CCTGTAGGGC
Statistics
Matches: 127, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
105 15 0.12
106 78 0.61
107 34 0.27
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.32
Consensus pattern (106 bp):
TGTAAAATTACCGAAATACCCTAGTATTGTAAAATTATCAAAATACCTCAGTTTGAAAAATTACC
AAATACCCCTAATATGTAAAATTACTAAAATACCCCTGATG
Found at i:69313380 original size:27 final size:27
Alignment explanation
Indices: 69313113--69313379 Score: 207
Period size: 27 Copynumber: 10.0 Consensus size: 27
69313103 AAACCTTAAT
69313113 TTGTAAAATTA-CAGAAATACCCCTAGT-
1 TTGTAAAATTATC-GAAATACCCCT-GTA
* * *
69313140 TTGTAAAATTACCAAAATACCCTCAGT-
1 TTGTAAAATTATCGAAATACCC-CTGTA
* *
69313167 TTGAAAAATTA-CCAAATA-CCC-GTAA
1 TTGTAAAATTATCGAAATACCCCTGT-A
69313192 TATGTAAAATTA-CTGAAATACCCCTG-A
1 T-TGTAAAATTATC-GAAATACCCCTGTA
*
69313219 TTTGTAAAATTATCGAAATACCCCCG-A
1 -TTGTAAAATTATCGAAATACCCCTGTA
** * *
69313246 TTTGTAAAATTATTAAAATA--CCTATT
1 -TTGTAAAATTATCGAAATACCCCTGTA
*
69313272 TTGTAAAATTACCGAAATACCCCTG-A
1 TTGTAAAATTATCGAAATACCCCTGTA
**
69313298 TTTGTAAAATTATTAAAATACCCCTGTA
1 -TTGTAAAATTATCGAAATACCCCTGTA
* * * *
69313326 GTGTAAAATTACCTAAATACCCTTGTA
1 TTGTAAAATTATCGAAATACCCCTGTA
*
69313353 GTGTAAAATTATCGAAATACCCCTGTA
1 TTGTAAAATTATCGAAATACCCCTGTA
69313380 GGGCAAAATG
Statistics
Matches: 197, Mismatches: 28, Indels: 30
0.77 0.11 0.12
Matches are distributed among these distances:
23 2 0.01
24 1 0.01
25 21 0.11
26 16 0.08
27 148 0.75
28 8 0.04
29 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTATCGAAATACCCCTGTA
Found at i:69316469 original size:55 final size:53
Alignment explanation
Indices: 69316344--69316532 Score: 236
Period size: 55 Copynumber: 3.5 Consensus size: 53
69316334 AACTTAACAT
* * * *
69316344 TGCCATGTCTTGACATGGTCTTACGTAGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* *
69316397 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * *
69316452 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
*
69316506 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
69316533 ATATCCTTAT
Statistics
Matches: 118, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
52 2 0.02
53 34 0.29
54 35 0.30
55 45 0.38
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:69316708 original size:45 final size:45
Alignment explanation
Indices: 69316498--69316727 Score: 176
Period size: 47 Copynumber: 5.0 Consensus size: 45
69316488 CCTTATAGAA
* * * * **
69316498 CTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTAT
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGC
* ***
69316543 CTTACCAAATGTCATGTTCCAAACATGGTCTTACATGGTATCCTTG-
1 CTTACC-AATGCCATG-TCTTGACATGGTCTTACATGGTATCCTTGC
* ** ** *
69316589 TTATAGTGCCAATGCCACATCTTGATGTGGTCTTACATGG-AGTCCTTAATC
1 CT-TA---CCAATGCCATGTCTTGACATGGTCTTACATGGTA-TCCTT--GC
** * * *
69316640 AATGCCAATGCCATGTCTGGACATGGTCTTACATGGGATCCTTGC
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGC
69316685 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
69316728 AACTGTCAAT
Statistics
Matches: 141, Mismatches: 33, Indels: 22
0.72 0.17 0.11
Matches are distributed among these distances:
45 44 0.31
46 9 0.06
47 57 0.40
48 22 0.16
49 6 0.04
50 3 0.02
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (45 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGC
Found at i:69320209 original size:29 final size:29
Alignment explanation
Indices: 69320177--69320311 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
69320167 ATACCCTCCG
** * *
69320177 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
69320206 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
69320235 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
69320264 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
69320293 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
69320312 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:69320244 original size:58 final size:58
Alignment explanation
Indices: 69320123--69320312 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
69320113 TACTCGATTT
* * * *** *
69320123 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
69320181 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
69320239 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
69320297 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
69320313 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:69328172 original size:29 final size:29
Alignment explanation
Indices: 69328140--69328274 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
69328130 ATACCCTCCG
** * *
69328140 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
69328169 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
69328198 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
69328227 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
69328256 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
69328275 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:69328207 original size:58 final size:58
Alignment explanation
Indices: 69328144--69328275 Score: 174
Period size: 58 Copynumber: 2.3 Consensus size: 58
69328134 CCTCCGAGCT
** * ** * *
69328144 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
69328202 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
69328260 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
69328276 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
58 62 1.00
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:69334449 original size:14 final size:16
Alignment explanation
Indices: 69334417--69334455 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
69334407 ATTTATATAA
*
69334417 CATATATCACCTATTT
1 CATATATCACCTATGT
69334433 CATATATCA-CT-TGT
1 CATATATCACCTATGT
69334447 CATATATCA
1 CATATATCA
69334456 TCATTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 2 0.09
16 9 0.41
ACGTcount: A:0.33, C:0.23, G:0.03, T:0.41
Consensus pattern (16 bp):
CATATATCACCTATGT
Found at i:69338122 original size:39 final size:39
Alignment explanation
Indices: 69338068--69338286 Score: 269
Period size: 39 Copynumber: 5.6 Consensus size: 39
69338058 AAAGCCTTCG
* **
69338068 GGACTTTAAGCCCGGATAT-ATTCCCAGCACGTAGCCTAC
1 GGACTTTAAGTCCGGATATAATTCCC-GCATATAGCCTAC
* * *
69338107 GGACCTTAAGTCCGGATATAATTCCTGCATATAGCCTGC
1 GGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTAC
* * * *
69338146 TGACTTTAAGTCAGAATATAATTCTCGCATATAGCCTAC
1 GGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTAC
* *
69338185 AGACTTTAAGTCCGGATATAATTCTCGCATATAGCCTAC
1 GGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTAC
* * * *
69338224 AGACTTTAAGTCCGGATATAATTCCCACACATAGCCTGC
1 GGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTAC
*
69338263 GGACTTTTAGTCCGGATATAATTC
1 GGACTTTAAGTCCGGATATAATTC
69338287 TCAAATATCA
Statistics
Matches: 157, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
39 152 0.97
40 5 0.03
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (39 bp):
GGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTAC
Found at i:69338233 original size:117 final size:117
Alignment explanation
Indices: 69338069--69338288 Score: 307
Period size: 117 Copynumber: 1.9 Consensus size: 117
69338059 AAGCCTTCGG
* * **
69338069 GACTTTAAGCCCGGATATATTCCCAGCACGTAGCCTACGGACCTTAAGTCCGGATATAATTCCTG
1 GACTTTAAGCCCGGATATATTCCCAGCACATAGCCTACAGACCTTAAGTCCGGATATAATTCCCA
* *
69338134 CATATAGCCTGCTGACTTTAAGTCAGAATATAATTCTCGCATATAGCCTACA
66 CACATAGCCTGCGGACTTTAAGTCAGAATATAATTCTCGCATATAGCCTACA
* * * *
69338186 GACTTTAAGTCCGGATATAATTCTC-GCATATAGCCTACAGACTTTAAGTCCGGATATAATTCCC
1 GACTTTAAGCCCGGATAT-ATTCCCAGCACATAGCCTACAGACCTTAAGTCCGGATATAATTCCC
* * *
69338250 ACACATAGCCTGCGGACTTTTAGTCCGGATATAATTCTC
65 ACACATAGCCTGCGGACTTTAAGTCAGAATATAATTCTC
69338289 AAATATCATG
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
117 84 0.94
118 5 0.06
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.30
Consensus pattern (117 bp):
GACTTTAAGCCCGGATATATTCCCAGCACATAGCCTACAGACCTTAAGTCCGGATATAATTCCCA
CACATAGCCTGCGGACTTTAAGTCAGAATATAATTCTCGCATATAGCCTACA
Found at i:69342105 original size:14 final size:14
Alignment explanation
Indices: 69342086--69342112 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
69342076 CCTAATGACG
69342086 AGATTGTTACAGAA
1 AGATTGTTACAGAA
69342100 AGATTGTTACAGA
1 AGATTGTTACAGA
69342113 GGTTAGAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (14 bp):
AGATTGTTACAGAA
Found at i:69344345 original size:29 final size:29
Alignment explanation
Indices: 69344313--69344385 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
69344303 CTTCGAGCTC
*
69344313 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
69344342 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
69344371 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
69344386 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:69352404 original size:29 final size:29
Alignment explanation
Indices: 69352372--69352444 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
69352362 CTTCGAGCTC
*
69352372 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
69352401 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
69352430 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
69352445 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:69356090 original size:59 final size:59
Alignment explanation
Indices: 69355998--69356114 Score: 234
Period size: 59 Copynumber: 2.0 Consensus size: 59
69355988 ATTTGTAAAG
69355998 TTTGTAGAATGGGTAGTAAGATGTATGGTTTAATAAGAAATGTGGGCTTCTGTGAGTAA
1 TTTGTAGAATGGGTAGTAAGATGTATGGTTTAATAAGAAATGTGGGCTTCTGTGAGTAA
69356057 TTTGTAGAATGGGTAGTAAGATGTATGGTTTAATAAGAAATGTGGGCTTCTGTGAGTA
1 TTTGTAGAATGGGTAGTAAGATGTATGGTTTAATAAGAAATGTGGGCTTCTGTGAGTA
69356115 TGTTATATGT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.30, C:0.03, G:0.31, T:0.36
Consensus pattern (59 bp):
TTTGTAGAATGGGTAGTAAGATGTATGGTTTAATAAGAAATGTGGGCTTCTGTGAGTAA
Found at i:69357013 original size:27 final size:27
Alignment explanation
Indices: 69356975--69357030 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
69356965 CGAAAAACTC
*
69356975 TTATGAATGAACCTCGCATGTGATGAT
1 TTATGAATGAACCCCGCATGTGATGAT
*
69357002 TTATGAATGAACCCCGTATGTGATGAT
1 TTATGAATGAACCCCGCATGTGATGAT
69357029 TT
1 TT
69357031 TTCGGTAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (27 bp):
TTATGAATGAACCCCGCATGTGATGAT
Found at i:69362700 original size:28 final size:29
Alignment explanation
Indices: 69362636--69362737 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
69362626 GTGACGAGAT
* * *
69362636 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
*
69362665 TGGCACTAAGTGTGCGAG-TTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
69362693 TGGCACTATGTGTGCGGGCTT-GAATCACA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
69362722 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
69362738 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
28 26 0.42
29 36 0.58
ACGTcount: A:0.22, C:0.17, G:0.33, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:69370429 original size:29 final size:28
Alignment explanation
Indices: 69370397--69370499 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
69370387 GTGACGAGAT
* *
69370397 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
69370426 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
69370455 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
69370484 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
69370500 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:69380675 original size:2 final size:2
Alignment explanation
Indices: 69380663--69380695 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
69380653 GACATTCAGT
*
69380663 TA TA CA TA TA TA TA TA TA TA TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
69380696 GATAAATTCG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:69386165 original size:29 final size:28
Alignment explanation
Indices: 69386106--69386208 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 28
69386096 GTGACGAGAT
* * *
69386106 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGC-TGGAATATA
*
69386135 TGGCACTAAGTGTGCGAGTCTGGACTATA
1 TGGCACTAAGTGTGCGAG-CTGGAATATA
* * * * *
69386164 TGGCACTATGTGTGTGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTGGAAT-ATA
69386193 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
69386209 TGATTGAGTA
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 5 0.08
29 54 0.90
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTGGAATATA
Found at i:69396392 original size:2 final size:2
Alignment explanation
Indices: 69396380--69396412 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
69396370 GACATTCAGT
*
69396380 TA TA CA TA TA TA TA TA TA TA TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
69396413 GATAAATTCG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:69400496 original size:21 final size:20
Alignment explanation
Indices: 69400472--69400510 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
69400462 GTGTAAATGT
69400472 AGTAACATAATTTTCATTTTA
1 AGTAACATAATTTT-ATTTTA
**
69400493 AGTAATTTAATTTTATTT
1 AGTAACATAATTTTATTT
69400511 ATATGATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (20 bp):
AGTAACATAATTTTATTTTA
Found at i:69421131 original size:40 final size:40
Alignment explanation
Indices: 69421057--69421242 Score: 185
Period size: 40 Copynumber: 4.7 Consensus size: 40
69421047 CCGCACCAAG
* * * * * * *
69421057 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
* * *
69421097 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
** *
69421137 GCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
* * * * *
69421177 GTCC-TCGGGACTTAGCCCGGATGTAGCCACTAGCACAATT
1 G-CCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
*
69421217 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
69421243 TTTCCAGCAT
Statistics
Matches: 119, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
39 2 0.02
40 115 0.97
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
Found at i:69421177 original size:80 final size:80
Alignment explanation
Indices: 69421093--69421278 Score: 241
Period size: 80 Copynumber: 2.3 Consensus size: 80
69421083 CGATTTGCAC
* * * *
69421093 AAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-TGCCTTCGGGTCTTAGCCCGG
1 AAATGCCTTCGGGACTTAGCCCGGATGTAACAACTAGCAC-AATTGCCTTCGGGTCTTAACCCGG
*
69421157 ATATAATTACTAGCAT
65 ATATAATTACCAGCAT
* *
69421173 AAATGTCC-TCGGGACTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAACCCGG
1 AAATG-CCTTCGGGACTTAGCCCGGATGTAACAACTAGCACAATTGCCTTCGGGTCTTAACCCGG
*
69421237 ATATAATTTCCAGCAT
65 ATATAATTACCAGCAT
* * *
69421253 TAACGTCTTCGGGACTTAGCCCGGAT
1 AAATGCCTTCGGGACTTAGCCCGGAT
69421279 ATCATTCAAT
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
79 3 0.03
80 87 0.95
81 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.27
Consensus pattern (80 bp):
AAATGCCTTCGGGACTTAGCCCGGATGTAACAACTAGCACAATTGCCTTCGGGTCTTAACCCGGA
TATAATTACCAGCAT
Found at i:69432984 original size:16 final size:16
Alignment explanation
Indices: 69432963--69432995 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
69432953 GTTGTAACCC
69432963 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
69432979 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
69432995 C
1 C
69432996 TTGAAGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.33, G:0.06, T:0.12
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:69434554 original size:28 final size:28
Alignment explanation
Indices: 69434475--69434560 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
69434465 GTGAGCATGA
* *
69434475 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
69434503 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* * *
69434532 TTATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
69434560 A
1 A
69434561 GACACAGGTA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
28 26 0.53
29 23 0.47
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:69435655 original size:17 final size:18
Alignment explanation
Indices: 69435622--69435656 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
69435612 TTTTAAGGAG
69435622 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
69435640 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
69435657 TTCAATGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:69439651 original size:40 final size:40
Alignment explanation
Indices: 69439596--69439757 Score: 177
Period size: 40 Copynumber: 4.1 Consensus size: 40
69439586 TTGAATGAAA
* *
69439596 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
69439636 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
69439676 CCGGGCTAAGA-CCGAAGGCA-TTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
69439714 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
69439754 CCGG
1 CCGG
69439758 TTAGATTCCG
Statistics
Matches: 100, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
37 1 0.01
38 20 0.20
39 18 0.18
40 59 0.59
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:69447874 original size:80 final size:80
Alignment explanation
Indices: 69447676--69447879 Score: 259
Period size: 80 Copynumber: 2.5 Consensus size: 80
69447666 TGAATGAAAC
* * * *
69447676 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATTCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
* ***
69447741 TGCGAGTTGTTAAAT
66 TGCAAGTTACCAAAT
*
69447756 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGCT-ATTATATCCGGGCTAAGACCCGAAGGCATT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATATCCGGGCTAAGACCCGAAGGCATT
*
69447819 GGTGCAAGTTACCAAAT
64 CGTGCAAGTTACCAAAT
* * *
69447836 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGG
69447880 TTAGATTCCG
Statistics
Matches: 106, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.03
80 99 0.93
81 4 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTTACCAAAT
Found at i:69447878 original size:40 final size:40
Alignment explanation
Indices: 69447676--69447879 Score: 216
Period size: 40 Copynumber: 5.1 Consensus size: 40
69447666 TGAATGAAAC
* ** *
69447676 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGATTATAT
* *
69447716 TCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAG-TGATTATAT
69447756 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGCT-ATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAG-TGATTATAT
* * * ** *
69447796 CCGGGCTAAGACCCGAAGGCATTGGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGATTATAT
* ** *
69447836 CCGGGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGATTATAT
69447876 CCGG
1 CCGG
69447880 TTAGATTCCG
Statistics
Matches: 138, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 132 0.96
41 5 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGATTATAT
Found at i:69449496 original size:37 final size:37
Alignment explanation
Indices: 69449439--69449541 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
69449429 CGAATAGTCC
* *
69449439 CCACACGTAGTTATCAGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
69449476 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
69449513 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
69449542 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:69449667 original size:48 final size:48
Alignment explanation
Indices: 69449555--69449730 Score: 289
Period size: 48 Copynumber: 3.6 Consensus size: 48
69449545 TATTTCCAAG
*
69449555 TAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACAT
*
69449605 TAGCCATTCGGCTTTACCACATATACATATCTCATACACATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
69449653 TAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTTACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
69449701 TAGCCATTCGGCTTTACCACATATACATAT
1 TAGCCATTCGGCTTTACCACATATACATAT
69449731 ATATTTATCA
Statistics
Matches: 120, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
48 87 0.73
50 33 0.28
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:69451282 original size:24 final size:24
Alignment explanation
Indices: 69451241--69451286 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
69451231 TCCATAGCTA
69451241 CAATGACCGAAAGATCTAGACATCT
1 CAATGACCGAAAGATCTA-ACATCT
**
69451266 CAAT-ACCGAAATTTCTAACAT
1 CAATGACCGAAAGATCTAACAT
69451287 GGGTTGCCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 11 0.58
25 4 0.21
ACGTcount: A:0.41, C:0.24, G:0.11, T:0.24
Consensus pattern (24 bp):
CAATGACCGAAAGATCTAACATCT
Found at i:69453068 original size:40 final size:40
Alignment explanation
Indices: 69453024--69453217 Score: 325
Period size: 40 Copynumber: 4.8 Consensus size: 40
69453014 GAATGCACAT
* * * * *
69453024 CACCAGCATGATTGCTCTTCAGGACCTAGCCCGCATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
69453064 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
69453104 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
69453144 CACCAGTACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
69453184 CACCAGCACGAATGCTCTTCGGGCCTTAGCCCGG
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGG
69453218 CCATATAAAT
Statistics
Matches: 146, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 146 1.00
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:69454553 original size:37 final size:37
Alignment explanation
Indices: 69454496--69454598 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
69454486 CGAATAGTCC
* *
69454496 CCACACGTAGTTATCAGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
69454533 CCATACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
69454570 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
69454599 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:69454803 original size:48 final size:48
Alignment explanation
Indices: 69454748--69455413 Score: 1145
Period size: 48 Copynumber: 13.9 Consensus size: 48
69454738 CATTTCCTAT
*
69454748 ATATTTCACACTAGCCATTCGGCTTTACCACATATACGTATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
69454796 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
* *
69454844 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATTTCTCATTC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
* *
69454892 ATATTTCACACTAGCCATTCGGCTTTACCACATATCCATATCTCATAT
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
69454940 ATATTTCACACTAGCCATTCGGCTTTACCACATATGCATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
* *
69454988 ATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
69455036 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
* *
69455084 ATATTTCACATTAGCCATTCGGCTTTACAACATATACATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
* *
69455132 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATAC
69455182 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
* * *
69455230 ACATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
69455278 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
69455326 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
69455374 ATATTTCACACTAGCCATTCGG-TTTACCACATATACATAT
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
69455414 ATATTTATCT
Statistics
Matches: 593, Mismatches: 23, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
47 18 0.03
48 529 0.89
50 46 0.08
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
Found at i:69457282 original size:31 final size:31
Alignment explanation
Indices: 69457244--69457307 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
69457234 CCTTTTCATA
69457244 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
69457275 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
69457306 TT
1 TT
69457308 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:69457547 original size:24 final size:24
Alignment explanation
Indices: 69457496--69457638 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
69457486 GCTTTATCAT
*
69457496 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
69457521 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
69457545 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
69457568 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
69457592 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
69457616 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69457639 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:69457575 original size:47 final size:48
Alignment explanation
Indices: 69457496--69457637 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
69457486 GCTTTATCAT
* *
69457496 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
69457545 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
69457592 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
69457638 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:69457596 original size:71 final size:72
Alignment explanation
Indices: 69457495--69457638 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
69457485 TGCTTTATCA
*
69457495 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
69457560 GCCCTTT
66 GCCCTTT
* * **
69457567 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
69457630 AGCCCTTT
65 AGCCCTTT
69457638 T
1 T
69457639 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:69457719 original size:11 final size:11
Alignment explanation
Indices: 69457689--69457742 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
69457679 TATGATTACC
69457689 TCATGTGCATA
1 TCATGTGCATA
*
69457700 TCA--TACATA
1 TCATGTGCATA
69457709 TCATGTGCATA
1 TCATGTGCATA
*
69457720 TCA--TACAT-
1 TCATGTGCATA
69457728 TCATGTGCATA
1 TCATGTGCATA
69457739 TCAT
1 TCAT
69457743 ACATACCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 3 0.09
9 12 0.35
10 4 0.12
11 15 0.44
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:69457733 original size:19 final size:20
Alignment explanation
Indices: 69457689--69457747 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
69457679 TATGATTACC
69457689 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
69457709 TCATGTGCATATCATACAT-
1 TCATGTGCATATCATACATA
69457728 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
69457748 CCATATTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:69457822 original size:25 final size:25
Alignment explanation
Indices: 69457790--69457837 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69457780 ATACATAAAC
* * *
69457790 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
69457815 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
69457838 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:69465381 original size:31 final size:31
Alignment explanation
Indices: 69465343--69465406 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
69465333 CCTTTTCATA
69465343 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
69465374 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
69465405 TT
1 TT
69465407 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:69465648 original size:24 final size:24
Alignment explanation
Indices: 69465597--69465715 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
69465587 GCTTTATCAT
*
69465597 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
69465622 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
69465646 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
69465669 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
69465693 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69465716 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:69465676 original size:47 final size:48
Alignment explanation
Indices: 69465597--69465715 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
69465587 GCTTTATCAT
*
69465597 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
69465646 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
69465693 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69465716 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:69465791 original size:20 final size:20
Alignment explanation
Indices: 69465766--69465825 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
69465756 TATGATTACC
69465766 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
69465786 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
69465806 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
69465826 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:69465796 original size:11 final size:11
Alignment explanation
Indices: 69465766--69465820 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
69465756 TATGATTACC
69465766 TCATGTGCATA
1 TCATGTGCATA
*
69465777 TCA--TACATA
1 TCATGTGCATA
69465786 TCATGTGCATA
1 TCATGTGCATA
* *
69465797 TCA--TACATT
1 TCATGTGCATA
69465806 TCATGTGCATA
1 TCATGTGCATA
69465817 TCAT
1 TCAT
69465821 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:69465900 original size:25 final size:25
Alignment explanation
Indices: 69465868--69465915 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69465858 ATACATAAAC
* * *
69465868 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
69465893 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
69465916 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:69469860 original size:40 final size:40
Alignment explanation
Indices: 69469814--69469932 Score: 211
Period size: 40 Copynumber: 3.0 Consensus size: 40
69469804 GAATGCACAT
69469814 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
69469854 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
69469894 CACCAGCACGAATACTCTTCGGGCCTTAGCCCGGCTATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
69469933 TAAATCTCAA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.26, C:0.32, G:0.22, T:0.20
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:69471266 original size:37 final size:37
Alignment explanation
Indices: 69471209--69471311 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
69471199 CGAATAGTCC
* *
69471209 CCACACGTAGTTATCAGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
69471246 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
69471283 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
69471312 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:69471516 original size:48 final size:48
Alignment explanation
Indices: 69471461--69472418 Score: 1632
Period size: 48 Copynumber: 19.9 Consensus size: 48
69471451 CATTTCCTAT
*
69471461 ATATTTCACACTAGCCATTCGGCTTTACCACATATACGTATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
69471509 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
69471557 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
* *
69471605 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATTTCTCATTC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
69471653 ATATTTCACACTAGCCATTCGGCTTTACCACATATCCATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
69471701 ATATTTCACACTAGCCATTCGGCTTTACCACATATGCATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
* *
69471749 ATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
* * *
69471797 ATATTTCACGCTAGCCATTCGGCTTTACCACATATACATTTCTCATTC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
* *
69471845 ATATTTCACGCTAGCCATTCGGCTTTACCACATATCCATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
69471893 ATATTTCACACTAGCCATTCGGCTTTACCACATATGCATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
69471941 ATATTTCACACTAGCCATTCGGCTTTACCACATATGCATAAT-TCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT-ATCTCATAC
69471989 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
69472037 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
* *
69472085 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATTC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
69472133 ATATTTCACACTAGCCATTCGGCATTCGGCTTACCACATATACATATCTCATAC
1 ATATTTCACACTAGCCATTCGGC--T----TTACCACATATACATATCTCATAC
* *
69472187 ACATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
69472235 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT-TCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
69472282 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
69472330 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
69472378 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
69472419 ATATTTATCT
Statistics
Matches: 871, Mismatches: 30, Indels: 18
0.95 0.03 0.02
Matches are distributed among these distances:
47 49 0.06
48 774 0.89
49 2 0.00
50 1 0.00
52 1 0.00
54 44 0.05
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.35
Consensus pattern (48 bp):
ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
Found at i:69477326 original size:18 final size:18
Alignment explanation
Indices: 69477303--69477338 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
69477293 TATGTTGCCT
69477303 TTGTGGCGTACTATGTTA
1 TTGTGGCGTACTATGTTA
*
69477321 TTGTGGCGTACTTTGTTA
1 TTGTGGCGTACTATGTTA
69477339 AGTCTGTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.11, G:0.28, T:0.47
Consensus pattern (18 bp):
TTGTGGCGTACTATGTTA
Found at i:69484993 original size:25 final size:25
Alignment explanation
Indices: 69484959--69485008 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
69484949 CACACGGCCA
69484959 GACCACACGCCCGTGTGTCCAGCCC
1 GACCACACGCCCGTGTGTCCAGCCC
69484984 GACCACACGCCCGTGTGTCCAGCCC
1 GACCACACGCCCGTGTGTCCAGCCC
69485009 ATGTTCCCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.16, C:0.48, G:0.24, T:0.12
Consensus pattern (25 bp):
GACCACACGCCCGTGTGTCCAGCCC
Found at i:69486498 original size:43 final size:44
Alignment explanation
Indices: 69486450--69486598 Score: 175
Period size: 43 Copynumber: 3.5 Consensus size: 44
69486440 TCCTAGATAT
*
69486450 GGTCTTACATGTTATCACATAT-CGATGCCACTGTCCCACACAG
1 GGTCTTACATGTAATCACATATACGATGCCACTGTCCCACACAG
* * *
69486493 GGTCTTACACG-AAGTCA-AT-TACTGATGTCGA-TGTCCCACACAT
1 GGTCTTACATGTAA-TCACATATAC-GATG-CCACTGTCCCACACAG
* *
69486536 GGTCTTACATGTAATCGCA-ATACAATGCCACTGTCCCACACAG
1 GGTCTTACATGTAATCACATATACGATGCCACTGTCCCACACAG
69486579 GGTCTTACATGTAATCACAT
1 GGTCTTACATGTAATCACAT
69486599 CTCGGTAACC
Statistics
Matches: 87, Mismatches: 10, Indels: 17
0.76 0.09 0.15
Matches are distributed among these distances:
41 1 0.01
42 6 0.07
43 72 0.83
44 8 0.09
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (44 bp):
GGTCTTACATGTAATCACATATACGATGCCACTGTCCCACACAG
Found at i:69495976 original size:38 final size:35
Alignment explanation
Indices: 69495917--69496034 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
69495907 TCAATCATGC
*
69495917 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
69495956 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
69495987 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
69496018 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
69496035 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:69495978 original size:31 final size:31
Alignment explanation
Indices: 69495940--69496034 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
69495930 CCTTTTCATA
*
69495940 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
69495971 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
69496002 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
69496033 TT
1 TT
69496035 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:69496290 original size:24 final size:24
Alignment explanation
Indices: 69496226--69496415 Score: 280
Period size: 24 Copynumber: 8.0 Consensus size: 24
69496216 GCTTTATCAT
*
69496226 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
69496251 ATAACTGGGGCA-AAG-CCTTTTCA
1 ATAACTGGGGCATAAGCCCTTTT-A
69496274 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
69496297 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
69496321 ATAACTAGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
69496345 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
69496369 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
69496393 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69496416 TCACTTCCTC
Statistics
Matches: 156, Mismatches: 4, Indels: 11
0.91 0.02 0.06
Matches are distributed among these distances:
22 5 0.03
23 37 0.24
24 100 0.64
25 14 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:69496494 original size:20 final size:20
Alignment explanation
Indices: 69496471--69496527 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
69496461 GAACATCTCG
69496471 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
69496491 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
69496511 TGTGCATATCATACATA
1 TGTGCATATCATACATA
69496528 GCCTCTTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:69496577 original size:24 final size:24
Alignment explanation
Indices: 69496527--69496678 Score: 254
Period size: 24 Copynumber: 6.4 Consensus size: 24
69496517 TATCATACAT
69496527 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
*
69496551 AGCCCTTTCAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
69496575 AGCCCTTTT-ATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
69496598 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
69496622 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
69496646 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
69496670 AGCCCTTTT
1 AGCCCTTTT
69496679 TCACTTCCTC
Statistics
Matches: 123, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
23 40 0.33
24 83 0.67
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:69496752 original size:9 final size:9
Alignment explanation
Indices: 69496738--69496814 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
69496728 ATCTCGTGTG
69496738 CATATCATA
1 CATATCATA
*
69496747 CATATCATGTG
1 CATATCA--TA
69496758 CATATCATA
1 CATATCATA
* *
69496767 CATGTCATGTG
1 CATATCA--TA
69496778 CATATCATA
1 CATATCATA
*
69496787 CATATCATGTG
1 CATATCA--TA
69496798 CATATCATA
1 CATATCATA
69496807 CATATCAT
1 CATATCAT
69496815 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Done.