Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 226 of 410
Found at i:69496757 original size:20 final size:20
Alignment explanation
Indices: 69496734--69496816 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
69496724 GAACATCTCG
69496734 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
69496754 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
69496774 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
69496794 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
69496814 TGT
1 TGT
69496817 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:69496763 original size:11 final size:11
Alignment explanation
Indices: 69496734--69496805 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
69496724 GAACATCTCG
69496734 TGTGCATATCA
1 TGTGCATATCA
*
69496745 --TACATATCA
1 TGTGCATATCA
69496754 TGTGCATATCA
1 TGTGCATATCA
* *
69496765 --TACATGTCA
1 TGTGCATATCA
69496774 TGTGCATATCA
1 TGTGCATATCA
*
69496785 --TACATATCA
1 TGTGCATATCA
69496794 TGTGCATATCA
1 TGTGCATATCA
69496805 T
1 T
69496806 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:69496899 original size:25 final size:25
Alignment explanation
Indices: 69496853--69496900 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
69496843 ATATATAAAC
* * * *
69496853 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
69496878 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
69496901 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:69500875 original size:41 final size:41
Alignment explanation
Indices: 69500825--69500909 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
69500815 TCATCTTCTC
69500825 AACCGAATTAAGGGCAAGGAATAGCCATTTTCAAATCTTCA
1 AACCGAATTAAGGGCAAGGAATAGCCATTTTCAAATCTTCA
*
69500866 AACCGAATTAAGGGCAAGGAATAGCCATTTTCAAATCTTTA
1 AACCGAATTAAGGGCAAGGAATAGCCATTTTCAAATCTTCA
69500907 AAC
1 AAC
69500910 ATTCGGTCAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (41 bp):
AACCGAATTAAGGGCAAGGAATAGCCATTTTCAAATCTTCA
Found at i:69501788 original size:22 final size:23
Alignment explanation
Indices: 69501741--69501791 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
69501731 CATCTCATTG
*
69501741 GAGCTTACTAATTTAGCTCGAAA
1 GAGCTTACTAATTCAGCTCGAAA
*
69501764 GAGCTTA-TTATTCAGCTC-AACA
1 GAGCTTACTAATTCAGCTCGAA-A
69501786 GAGCTT
1 GAGCTT
69501792 GCCGTTTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 2 0.08
22 16 0.64
23 7 0.28
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (23 bp):
GAGCTTACTAATTCAGCTCGAAA
Found at i:69506301 original size:40 final size:39
Alignment explanation
Indices: 69506237--69506424 Score: 223
Period size: 39 Copynumber: 4.8 Consensus size: 39
69506227 GCTACTCGTT
* * * ** *
69506237 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
69506277 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* * *
69506317 CAATTGCCTTTGGGCTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * *
69506356 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
*
69506395 CAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
69506425 CTCGAACATT
Statistics
Matches: 131, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 87 0.66
40 44 0.34
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:69506354 original size:39 final size:39
Alignment explanation
Indices: 69506273--69506425 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
69506263 TATGGTAACC
* *
69506273 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
69506313 CGCACAATTGCCTTTGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
69506352 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
69506391 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
69506426 TCGAACATTC
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 88 0.85
40 16 0.15
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:69518995 original size:22 final size:22
Alignment explanation
Indices: 69518951--69518996 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
69518941 TTTCAACATC
* *
69518951 TAAAACATTACATTAAGCTAAT
1 TAAAACAATACATTAAGCAAAT
* *
69518973 TAAAACAATATATTAATCAAAT
1 TAAAACAATACATTAAGCAAAT
69518995 TA
1 TA
69518997 GTCCATTGAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.54, C:0.11, G:0.02, T:0.33
Consensus pattern (22 bp):
TAAAACAATACATTAAGCAAAT
Found at i:69520923 original size:43 final size:42
Alignment explanation
Indices: 69520875--69520966 Score: 114
Period size: 43 Copynumber: 2.2 Consensus size: 42
69520865 TGTGTTATTG
* * * *
69520875 TGTAAGACCATGTTTGGGACATTGGCGTCG-ATTTGTGATTTAA
1 TGTAAGACCATGTCTAGGACATCGGCATCGTA-TT-TGATTTAA
*
69520918 TGTAAGACCATGTCTAGGACATCGGCATCGTATTTGATTTCA
1 TGTAAGACCATGTCTAGGACATCGGCATCGTATTTGATTTAA
69520960 TGTAAGA
1 TGTAAGA
69520967 TCCCATCTGG
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 14 0.33
43 28 0.65
44 1 0.02
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (42 bp):
TGTAAGACCATGTCTAGGACATCGGCATCGTATTTGATTTAA
Found at i:69521008 original size:43 final size:42
Alignment explanation
Indices: 69520941--69521030 Score: 105
Period size: 43 Copynumber: 2.1 Consensus size: 42
69520931 CTAGGACATC
*
69520941 GGCATCGTATTTGATTTCATGTAAGATCC-CATCTGGGATAG-T
1 GGCATCGTATTTGATTGCATGTAAGA-CCACATCTGGGAT-GTT
*
69520983 GGCATCGATATTTG-TGTGCATGTAAGACCACGTCTGGGATGTT
1 GGCATCG-TATTTGAT-TGCATGTAAGACCACATCTGGGATGTT
69521026 GGCAT
1 GGCAT
69521031 TGTACGAGCT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
42 11 0.26
43 31 0.74
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (42 bp):
GGCATCGTATTTGATTGCATGTAAGACCACATCTGGGATGTT
Found at i:69524447 original size:175 final size:175
Alignment explanation
Indices: 69524147--69524495 Score: 583
Period size: 175 Copynumber: 2.0 Consensus size: 175
69524137 AATTGACTTA
69524147 TGTGACAGCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAAA
1 TGTGACAGCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAAA
* * * * *
69524212 TTATTTGAATATGATATTTCTTGTCTAAAATATGTGATTATGAATGTGTGAAAGTTTTAAGCTTC
66 TTATTTGAATATGATATTTATGGTCTAAAATATGTGAATATGAATGTGCGAAAATTTTAAGCTTC
*
69524277 GATTTAGTAAATTGCATGTGAATTTAGT-CAATAGGACTTATGTGT
131 GATTTAGTAAATTGCATGTGAATGTAGTAC-ATAGGACTTATGTGT
*
69524322 TGTGACAGCCCTATAGTGACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAAA
1 TGTGACAGCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAAA
*
69524387 TTATTTGAATGTGATATTTATGGTCTAAAATATGTGAATATGAATGTGCGAAAATTTTAAGCTTC
66 TTATTTGAATATGATATTTATGGTCTAAAATATGTGAATATGAATGTGCGAAAATTTTAAGCTTC
* * *
69524452 GATTTAGTTAATTGCGTGTGAATGTAGTACATAGGACTTGTGTG
131 GATTTAGTAAATTGCATGTGAATGTAGTACATAGGACTTATGTG
69524496 ACACTTTTGA
Statistics
Matches: 162, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
175 161 0.99
176 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (175 bp):
TGTGACAGCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAAA
TTATTTGAATATGATATTTATGGTCTAAAATATGTGAATATGAATGTGCGAAAATTTTAAGCTTC
GATTTAGTAAATTGCATGTGAATGTAGTACATAGGACTTATGTGT
Found at i:69526131 original size:39 final size:40
Alignment explanation
Indices: 69526030--69526174 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
69526020 TGGAATGATG
* *
69526030 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
69526070 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
*
69526109 TTCCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * *
69526149 ACCTGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69526175 AATGAGTAGC
Statistics
Matches: 91, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
39 33 0.36
40 50 0.55
41 8 0.09
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:69526193 original size:79 final size:80
Alignment explanation
Indices: 69526030--69526181 Score: 186
Period size: 79 Copynumber: 1.9 Consensus size: 80
69526020 TGGAATGATG
*
69526030 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
**
69526095 GTGCGAGTTACTAAT
66 GAACGAGTTACTAAT
* * *
69526110 TCCGGGCTAAG-CCCGAAGGCATTTGTG-TGAGTTACTATAACCTGG-CTATG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAACC-GGACTAAGAT-CCGAAGGCA
*
69526171 TTTGAATGAGT
63 TTTGAACGAGT
69526182 AGCTATATCC
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
78 1 0.02
79 42 0.68
80 19 0.31
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTTACTAAT
Found at i:69534092 original size:39 final size:38
Alignment explanation
Indices: 69533992--69534172 Score: 211
Period size: 39 Copynumber: 4.7 Consensus size: 38
69533982 TCGAATGATG
*
69533992 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTAT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-AAGTTACTAT
* *
69534030 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCGAAGGCATTTGTGCAAGTTACT-AT
* * *
69534071 TCCGGGCTAAGCCCGAAGGCATTGGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACT-AT
* *
69534110 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACTAT
* * *
69534148 ACCGGGATATGTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCGAAGGCATTTG
69534173 AATGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 23 0.19
39 66 0.54
40 25 0.20
41 9 0.07
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (38 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACTAT
Found at i:69541110 original size:40 final size:40
Alignment explanation
Indices: 69541064--69541353 Score: 465
Period size: 40 Copynumber: 7.2 Consensus size: 40
69541054 GGCATTGCGA
69541064 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
69541104 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
69541144 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
69541184 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
69541224 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
69541264 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
69541303 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
69541344 CTATATCCGG
1 ATATATCCGG
69541354 TTAAATCCCG
Statistics
Matches: 231, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
39 2 0.01
40 229 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:69550029 original size:42 final size:44
Alignment explanation
Indices: 69549954--69550078 Score: 130
Period size: 42 Copynumber: 2.9 Consensus size: 44
69549944 CCAAATGTGG
* * * * *
69549954 TCTTACATGT-AATCAAATATCAATGCCACTGTCCCAGACAGGG
1 TCTTACACGTAAATCAAAAATCGATGCCAATGTCCCAGACAGGA
* * * * *
69549997 TTTTACACG-AGATCATATAT-GATGCCAATGTCCCAGACATGA
1 TCTTACACGTAAATCAAAAATCGATGCCAATGTCCCAGACAGGA
*
69550039 TCTTACACGTAAATCAAAAATCGATGCCAACGTCCCAGAC
1 TCTTACACGTAAATCAAAAATCGATGCCAATGTCCCAGAC
69550079 GTGGCCTTAC
Statistics
Matches: 66, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
42 26 0.39
43 23 0.35
44 17 0.26
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (44 bp):
TCTTACACGTAAATCAAAAATCGATGCCAATGTCCCAGACAGGA
Found at i:69554270 original size:24 final size:24
Alignment explanation
Indices: 69554243--69554405 Score: 281
Period size: 24 Copynumber: 6.8 Consensus size: 24
69554233 CTTATTATGT
**
69554243 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
69554267 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
69554291 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
69554315 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
* **
69554339 TCGCGCACATAGTGCCATAGTGGA
1 TCGCACACATAGTGCCATAGTAAA
69554363 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
69554387 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
69554406 TATTTCTAGC
Statistics
Matches: 131, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 131 1.00
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:69558589 original size:44 final size:43
Alignment explanation
Indices: 69558451--69558603 Score: 143
Period size: 42 Copynumber: 3.6 Consensus size: 43
69558441 CGTACAATGT
* * * *
69558451 CAACGTACTAGACATGGTCTTACATGT-AATCAAATATTGATGC
1 CAACGTCCCAGACATGGTCTTACACGTAAATCAAA-ATCGATGC
* * * *
69558494 C-ACTGTCCCAGATAGGGTCTTACAC-AAAATC-ATATACGATGC
1 CAAC-GTCCCAGACATGGTCTTACACGTAAATCAAAAT-CGATGC
*
69558536 CAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCGATGC
1 CAACGTCCCAGACATGGTCTTACACGTAAATCA-AAATCGATGC
* *
69558580 CAACGTCCCAGACGTTGTCTTACA
1 CAACGTCCCAGACATGGTCTTACA
69558604 TGATAACACA
Statistics
Matches: 87, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
41 2 0.02
42 28 0.32
43 27 0.31
44 27 0.31
45 3 0.03
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (43 bp):
CAACGTCCCAGACATGGTCTTACACGTAAATCAAAATCGATGC
Found at i:69559317 original size:23 final size:22
Alignment explanation
Indices: 69559286--69559336 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
69559276 CATATTTCAT
*
69559286 AAATTAACAAT-TCAAAACTCCCA
1 AAATCAACAATGTCAAAACT--CA
*
69559309 AAATCAACAATGTCATAACTCA
1 AAATCAACAATGTCAAAACTCA
69559331 AAATCA
1 AAATCA
69559337 TCGTCAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 8 0.32
23 10 0.40
24 7 0.28
ACGTcount: A:0.53, C:0.24, G:0.02, T:0.22
Consensus pattern (22 bp):
AAATCAACAATGTCAAAACTCA
Found at i:69561453 original size:25 final size:24
Alignment explanation
Indices: 69561433--69561514 Score: 112
Period size: 25 Copynumber: 3.3 Consensus size: 24
69561423 ATGCTCTCAC
69561433 GAGCTGTAAATCAGTAAGCTCATAT
1 GAGCTGTAAATCAGTAAGCTC-TAT
69561458 GAGCTG-AGAATCAGTAAGCTCTTAT
1 GAGCTGTA-AATCAGTAAGCTC-TAT
*
69561483 AAGCTGTAAATCAGTAAGCTCATAT
1 GAGCTGTAAATCAGTAAGCTC-TAT
69561508 GAGCTGT
1 GAGCTGT
69561515 GGTGTGTTCG
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
24 1 0.02
25 49 0.96
26 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (24 bp):
GAGCTGTAAATCAGTAAGCTCTAT
Found at i:69565230 original size:40 final size:41
Alignment explanation
Indices: 69565147--69565355 Score: 241
Period size: 42 Copynumber: 5.1 Consensus size: 41
69565137 CTCGATATAT
* * *
69565147 TATATAT-TCGGGTTAAATCCCGCAGGCTTCGTGTTGG-CA
1 TATATATATCCGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
*
69565186 -ATATATATCCGGTT-AATCCCGCAAGCTTCGTGCTGGTAATA
1 TATATATATCCGGTTAAATCCCGCAGGCTTCGTGCTGGT-A-A
*
69565227 TATATATATCCAGGTTAAATCCCGTAGGCTTCGTGCTGGT-A
1 TATATATATCC-GGTTAAATCCCGCAGGCTTCGTGCTGGTAA
* *
69565268 -ATATATATCCGGGTTAAATCTCACAGGCTTCGTGCTGGTAA
1 TATATATATCC-GGTTAAATCCCGCAGGCTTCGTGCTGGTAA
* * *
69565309 TATATATATTCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAC
1 TATATATA-TCCGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
69565351 TATAT
1 TATAT
69565356 CCGGGCTTAA
Statistics
Matches: 145, Mismatches: 15, Indels: 17
0.82 0.08 0.10
Matches are distributed among these distances:
38 26 0.18
39 6 0.04
40 35 0.24
41 3 0.02
42 48 0.33
43 6 0.04
44 21 0.14
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (41 bp):
TATATATATCCGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
Found at i:69565312 original size:82 final size:82
Alignment explanation
Indices: 69565141--69565355 Score: 299
Period size: 82 Copynumber: 2.6 Consensus size: 82
69565131 TTAGCACTCG
* *
69565141 ATATATTATATATTCGGGTTAAATCCCGCAGGCTTCGTGTTGGCAATATATATCCGGTTAATCCC
1 ATATA-TATATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATATCCGGTTAATCCC
*
69565206 GCAAGCTTCGTGCTGGTA
65 ACAAGCTTCGTGCTGGTA
* * * *
69565224 ATATATATATATCCAGGTTAAATCCCGTAGGCTTCGTGCTGGTAATATATATCCGGGTTAAATCT
1 ATATATATATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATATCC-GGTT-AATCC
*
69565289 CACAGGCTTCGTGCTGGT-
64 CACAAGCTTCGTGCTGGTA
* *
69565307 A-ATATATATATTCGGGTTAAATCCCGCAGGCTTAGTGCTGGTACTATAT
1 ATATATATATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATAT
69565356 CCGGGCTTAA
Statistics
Matches: 117, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
82 87 0.74
83 10 0.09
84 20 0.17
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (82 bp):
ATATATATATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATATCCGGTTAATCCCA
CAAGCTTCGTGCTGGTA
Found at i:69574533 original size:40 final size:40
Alignment explanation
Indices: 69574496--69574679 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
69574486 GCTACTCGTT
*
69574496 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
69574536 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
69574576 CAAATGCCTTC-GGACTTA-ACCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
69574614 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
69574655 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69574680 CATCATTCGA
Statistics
Matches: 131, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
38 33 0.25
39 11 0.08
40 74 0.56
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:69574625 original size:78 final size:81
Alignment explanation
Indices: 69574496--69574678 Score: 234
Period size: 78 Copynumber: 2.3 Consensus size: 81
69574486 GCTACTCGTT
* *
69574496 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGACCGGTTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
69574560 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
**
69574576 CAAATGCCTTC-GGACTTA-ACCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGACCGG-TTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
69574638 GATATAGTCACTTAGCA
65 GATATAGTAACTTAGCA
*
69574655 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGACCGG
69574679 ACATCATTCG
Statistics
Matches: 90, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
77 3 0.03
78 49 0.54
79 23 0.26
80 15 0.17
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGACCGGTTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:69582610 original size:40 final size:40
Alignment explanation
Indices: 69582573--69582757 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
69582563 GCTACTCGTT
*
69582573 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
69582613 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
69582653 CAAATGCCTTC-GGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
69582692 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
69582733 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69582758 CATCATTCGA
Statistics
Matches: 131, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 41 0.31
40 77 0.59
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:69582690 original size:79 final size:81
Alignment explanation
Indices: 69582573--69582756 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 81
69582563 GCTACTCGTT
* *
69582573 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
69582637 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
69582653 CAAATGCCTTC-GGACTTAACTCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAACCCGG-TTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
69582716 GATATAGTCACTTAGCA
65 GATATAGTAACTTAGCA
*
69582733 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGG
69582757 ACATCATTCG
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.61
80 32 0.36
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:69583698 original size:61 final size:61
Alignment explanation
Indices: 69583603--69583722 Score: 231
Period size: 61 Copynumber: 2.0 Consensus size: 61
69583593 TAGCACAAAA
69583603 CTTGCTAGCCAATTCTTCTCCATCTAGCAACTAATGCACATACGAGCTCATTTGTTAGAAT
1 CTTGCTAGCCAATTCTTCTCCATCTAGCAACTAATGCACATACGAGCTCATTTGTTAGAAT
*
69583664 CTTGCTAGCCGATTCTTCTCCATCTAGCAACTAATGCACATACGAGCTCATTTGTTAGA
1 CTTGCTAGCCAATTCTTCTCCATCTAGCAACTAATGCACATACGAGCTCATTTGTTAGA
69583723 CTCTACTTCA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.33
Consensus pattern (61 bp):
CTTGCTAGCCAATTCTTCTCCATCTAGCAACTAATGCACATACGAGCTCATTTGTTAGAAT
Found at i:69589034 original size:16 final size:17
Alignment explanation
Indices: 69588997--69589036 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
69588987 AACAAAGAAA
69588997 GTTTGGGATTTCGAGAT
1 GTTTGGGATTTCGAGAT
* *
69589014 TTTTGGG-TTTCGGGAT
1 GTTTGGGATTTCGAGAT
69589030 GTTTGGG
1 GTTTGGG
69589037 GCGTTACAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.10, C:0.05, G:0.40, T:0.45
Consensus pattern (17 bp):
GTTTGGGATTTCGAGAT
Found at i:69598870 original size:28 final size:29
Alignment explanation
Indices: 69598838--69598899 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 29
69598828 ACATATCTGA
*
69598838 ATATGGCCCACTAGGCCC-AATCTCTTTC
1 ATATGGCCCACTAGGCCCAAATCACTTTC
* *
69598866 ATATGGCCCATTAGGCCCAAATCACTTTT
1 ATATGGCCCACTAGGCCCAAATCACTTTC
69598895 ATATG
1 ATATG
69598900 TGTGACAGCC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 17 0.57
29 13 0.43
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.31
Consensus pattern (29 bp):
ATATGGCCCACTAGGCCCAAATCACTTTC
Found at i:69600769 original size:40 final size:40
Alignment explanation
Indices: 69600642--69600771 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
69600632 ATGCTGGAAA
* *
69600642 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
69600682 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
69600722 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
69600762 TTATATCCGG
1 TTATATCCGG
69600772 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:69608784 original size:40 final size:40
Alignment explanation
Indices: 69608657--69608786 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
69608647 ATGCTGGAAA
* *
69608657 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
69608697 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
69608737 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
69608777 TTATATCCGG
1 TTATATCCGG
69608787 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:69618396 original size:40 final size:41
Alignment explanation
Indices: 69618303--69618522 Score: 235
Period size: 40 Copynumber: 5.5 Consensus size: 41
69618293 ATTCGAATGG
*
69618303 TATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACTA
1 TATCCGGGCTAAGATCCCGAAGGCATTTGTGCTA-GTGACTA
* * * *
69618344 TAACCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CTA
1 TATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACTA
*
69618384 TATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGACTA
1 TATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACTA
* *
69618424 TATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACCA
1 TATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACTA
* * * *
69618464 CATCCGGGCTAAGA-CCCGAAGGC-CTTGTGCAAGT-AGTTA
1 TATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGA-CTA
69618503 TATCC-GGCTAA-ATCCCGAAG
1 TATCCGGGCTAAGATCCCGAAG
69618523 ATTACTTAGT
Statistics
Matches: 151, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
37 1 0.01
38 14 0.09
39 14 0.09
40 93 0.62
41 28 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.24
Consensus pattern (41 bp):
TATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACTA
Found at i:69646214 original size:19 final size:19
Alignment explanation
Indices: 69646192--69646249 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
69646182 TTCTGATTTT
69646192 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
69646211 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
69646223 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
69646242 TGATTCTG
1 TGATTCTG
69646250 ATTCTAATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:69646219 original size:6 final size:6
Alignment explanation
Indices: 69646181--69646300 Score: 77
Period size: 6 Copynumber: 19.3 Consensus size: 6
69646171 TTGCATTCAC
* * *
69646181 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
69646231 -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
69646281 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
69646301 AATGTTTCTT
Statistics
Matches: 88, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
5 6 0.07
6 65 0.74
7 14 0.16
8 3 0.03
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:69646227 original size:31 final size:31
Alignment explanation
Indices: 69646181--69646291 Score: 159
Period size: 31 Copynumber: 3.5 Consensus size: 31
69646171 TTGCATTCAC
*
69646181 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
*
69646213 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * * *
69646244 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
69646275 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
69646292 AGTTCTGATA
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
31 66 0.90
32 7 0.10
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:69648477 original size:53 final size:54
Alignment explanation
Indices: 69648415--69648621 Score: 229
Period size: 53 Copynumber: 3.8 Consensus size: 54
69648405 TTCCTTTTTA
* * *
69648415 AACTTACCATTGCCATGTCTTGGCATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
69648468 AACTCACCATTGCCATG-CTTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGTC-TTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * *
69648522 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
69648577 AACTTACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
69648622 AAACCTTAAT
Statistics
Matches: 127, Mismatches: 23, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
52 1 0.01
53 46 0.36
54 39 0.31
55 40 0.31
56 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:69668004 original size:41 final size:41
Alignment explanation
Indices: 69667947--69668029 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
69667937 TAGTGTGGTG
*
69667947 TTATCTTCGGCCCTTCCAACTCAAGCTATTGTACAGACCTA
1 TTATCTCCGGCCCTTCCAACTCAAGCTATTGTACAGACCTA
* *
69667988 TTATCTCCGGCCCTTCCAACTCGAGCTATTGTATAGACCTA
1 TTATCTCCGGCCCTTCCAACTCAAGCTATTGTACAGACCTA
69668029 T
1 T
69668030 AAGAAATGGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.23, C:0.31, G:0.13, T:0.33
Consensus pattern (41 bp):
TTATCTCCGGCCCTTCCAACTCAAGCTATTGTACAGACCTA
Found at i:69673564 original size:24 final size:24
Alignment explanation
Indices: 69673537--69673612 Score: 81
Period size: 24 Copynumber: 3.4 Consensus size: 24
69673527 ATTCACCCTA
* *
69673537 AAACCCTAATCTAAAGTTACTTAC
1 AAACCCTAATATAAAGTTAATTAC
* *
69673561 AAACCCTAATATGAAGTTAATTGC
1 AAACCCTAATATAAAGTTAATTAC
69673585 AAACCC-----TAAAGTTAATTAC
1 AAACCCTAATATAAAGTTAATTAC
69673604 AAACCCTAA
1 AAACCCTAA
69673613 AGTGAGTTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
19 17 0.40
24 26 0.60
ACGTcount: A:0.45, C:0.22, G:0.07, T:0.26
Consensus pattern (24 bp):
AAACCCTAATATAAAGTTAATTAC
Found at i:69673598 original size:19 final size:19
Alignment explanation
Indices: 69673574--69673615 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
69673564 CCCTAATATG
*
69673574 AAGTTAATTGCAAACCCTA
1 AAGTTAATTACAAACCCTA
69673593 AAGTTAATTACAAACCCTA
1 AAGTTAATTACAAACCCTA
69673612 AAGT
1 AAGT
69673616 GAGTTAATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.45, C:0.19, G:0.10, T:0.26
Consensus pattern (19 bp):
AAGTTAATTACAAACCCTA
Found at i:69675231 original size:24 final size:24
Alignment explanation
Indices: 69675195--69675246 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
69675185 TTTCAAGAAG
* * *
69675195 ATTTAGTATTTATTGGTATAATAT
1 ATTTAGTAATTATTAGCATAATAT
* *
69675219 ATTTTGTAATTATTAGCATAATTT
1 ATTTAGTAATTATTAGCATAATAT
69675243 ATTT
1 ATTT
69675247 GACTTACAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.56
Consensus pattern (24 bp):
ATTTAGTAATTATTAGCATAATAT
Found at i:69679339 original size:16 final size:16
Alignment explanation
Indices: 69679318--69679348 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69679308 TATATTTTTC
*
69679318 ATTTGCATCATATATG
1 ATTTGCAACATATATG
69679334 ATTTGCAACATATAT
1 ATTTGCAACATATAT
69679349 CAAATAACCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (16 bp):
ATTTGCAACATATATG
Found at i:69679641 original size:43 final size:41
Alignment explanation
Indices: 69679515--69679656 Score: 124
Period size: 43 Copynumber: 3.4 Consensus size: 41
69679505 CCAACGTCCT
* * * *
69679515 AGACATGGTCTTACATGCTATCACATATCGATGCCACTGTCCT
1 AGACATGGTCTTACACG-AATCACATATCGATGCCAC-ATCCC
* * * *
69679558 AGACAGGGTCTTACACGAATCAAATA-CGATGACGATATCCC
1 AGACATGGTCTTACACGAATCACATATCGATG-CCACATCCC
* * *
69679599 AAACATGATCTTACACATAATCACATATCGATGCCAACATCCC
1 AGACATGGTCTTACAC-GAATCACATATCGATGCC-ACATCCC
*
69679642 AGACGTGGTCTTACA
1 AGACATGGTCTTACA
69679657 TGGGAACACA
Statistics
Matches: 77, Mismatches: 18, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
41 21 0.27
42 18 0.23
43 38 0.49
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (41 bp):
AGACATGGTCTTACACGAATCACATATCGATGCCACATCCC
Found at i:69682436 original size:28 final size:28
Alignment explanation
Indices: 69682396--69682454 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
69682386 ATTATCGAAC
* *
69682396 CATCATCATACATATCCATATGCGCATT
1 CATCATCAGACATATCCATATGCACATT
*
69682424 CATCATCAGACATATTCATATGCACATT
1 CATCATCAGACATATCCATATGCACATT
69682452 CAT
1 CAT
69682455 TTCACGCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.34, C:0.27, G:0.07, T:0.32
Consensus pattern (28 bp):
CATCATCAGACATATCCATATGCACATT
Found at i:69689270 original size:46 final size:46
Alignment explanation
Indices: 69689221--69689400 Score: 188
Period size: 46 Copynumber: 3.9 Consensus size: 46
69689211 TACACTGACA
*
69689221 CATCTCATAGCCGATGCATGTCCCAAACATGTCTTCCACTGGCT-T
1 CATCTCATAGCCGATGCATGTCCCAAACATGTCTTACACTGGCTCT
* * * *
69689266 ACATCTC-GAGACTGATGCATGTCCTAAACATGTCTTACACTAGCTCT
1 -CATCTCATAG-CCGATGCATGTCCCAAACATGTCTTACACTGGCTCT
*
69689313 CATCTCA-ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT
1 CATCTCATA-GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTCT
* * * *
69689361 CATAAT-ATGGCCGATGCATGTCACAGACATGTCTTACACT
1 CAT-CTCATAGCCGATGCATGTCCCAAACATGTCTTACACT
69689401 AGCACACAAA
Statistics
Matches: 114, Mismatches: 12, Indels: 16
0.80 0.08 0.11
Matches are distributed among these distances:
45 2 0.02
46 58 0.51
47 27 0.24
48 26 0.23
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
CATCTCATAGCCGATGCATGTCCCAAACATGTCTTACACTGGCTCT
Found at i:69697517 original size:40 final size:39
Alignment explanation
Indices: 69697472--69697601 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
69697462 CGGAATATAA
69697472 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
69697512 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
69697552 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
69697592 CCGGATATAA
1 CCGGATATAA
69697602 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:69697616 original size:40 final size:40
Alignment explanation
Indices: 69697488--69697639 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
69697478 ATAACCATGT
* * *
69697488 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
69697528 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
69697568 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
69697608 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
69697640 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:69697622 original size:80 final size:80
Alignment explanation
Indices: 69697488--69697637 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
69697478 ATAACCATGT
*
69697488 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
69697552 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
69697568 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
69697631 CCCGGAT
64 CCCGGAT
69697638 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:69705588 original size:40 final size:40
Alignment explanation
Indices: 69705507--69705610 Score: 111
Period size: 40 Copynumber: 2.6 Consensus size: 40
69705497 CTCGCACGAA
* * *
69705507 TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAACCACCAGCACAAT
* *** *
69705547 TGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAACCACCAGCACAAT
* *
69705587 TGTCTTCGGG-ATTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
69705611 CATTCAATTT
Statistics
Matches: 53, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
39 12 0.23
40 41 0.77
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.30
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACCACCAGCACAAT
Found at i:69713418 original size:40 final size:40
Alignment explanation
Indices: 69713373--69713462 Score: 112
Period size: 40 Copynumber: 2.2 Consensus size: 40
69713363 CGGAATATAA
*
69713373 CCGGATATAACCA-T-GTCCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAG--CACAAATGCCTTCGGGTCTTAAC
* * *
69713413 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAAC
69713453 CCGGATATAA
1 CCGGATATAA
69713463 TTTCCAGCAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
40 40 0.95
41 1 0.02
42 1 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:69713477 original size:40 final size:40
Alignment explanation
Indices: 69713390--69713500 Score: 116
Period size: 40 Copynumber: 2.8 Consensus size: 40
69713380 TAACCATGTC
* * * *
69713390 CACAAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAG
1 CACAATTGCCTTCGGGTCTTAGCCCGGATATAACCACCAG
* ***
69713430 CACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAG
1 CACAATTGCCTTCGGGTCTTAGCCCGGATATAACCACCAG
* *
69713470 CATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 CACAATTGCCTTCGGG-TCTTAGCCCGGATAT
69713501 CATTCAATTT
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 58 0.98
41 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
CACAATTGCCTTCGGGTCTTAGCCCGGATATAACCACCAG
Found at i:69717837 original size:46 final size:45
Alignment explanation
Indices: 69717770--69718027 Score: 206
Period size: 46 Copynumber: 5.6 Consensus size: 45
69717760 GTAACCCGCC
* *
69717770 CATAAGCGAACTCGGGCTCAACTCAACGAGCTCAGGCATTCGCATT
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCATT
*
69717816 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-A-TCCCTAGTT
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A-TT
* * * *
69717861 ACATCTCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCA-T
1 -CA--TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATT
* * *
69717908 CAATAAGTGAACTCGGACTCAACTCAACGAGTTTGG-ATGC-CTAGTT
1 C-ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A-TT
* * * * *
69717954 ACATTTCA-TGAACTCGGATTCAACTCAACGAGTTCGGACGTTCGCATC
1 -CA--TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATT
69718002 CATAAGTGAACTCGGACTCAACTCAA
1 CATAAGTGAACTCGGACTCAACTCAA
69718028 TGAACTCGAT
Statistics
Matches: 171, Mismatches: 21, Indels: 40
0.74 0.09 0.17
Matches are distributed among these distances:
43 4 0.02
44 6 0.04
45 8 0.05
46 81 0.47
47 58 0.34
48 5 0.03
49 5 0.03
50 4 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATT
Found at i:69717886 original size:47 final size:46
Alignment explanation
Indices: 69717822--69717991 Score: 186
Period size: 47 Copynumber: 3.7 Consensus size: 46
69717812 CATTCATAAG
*
69717822 TGAACTCGGACTCAACTCAACGAGCTCGGATCCCTAGTTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGAT-CCTAGTTACATCTCA
* * * *
69717869 CGAACTCGGACTCAACTCAATGAGTTCGGA--C-A-TTCGCATCAATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATCCTAGTT-ACATC--TCA
* *
69717914 GTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACATTTCA
1 -TGAACTCGGACTCAACTCAACGAGTTCGGAT-CCTAGTTACATCTCA
*
69717962 TGAACTCGGATTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
69717992 CGTTCGCATC
Statistics
Matches: 101, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 2 0.02
46 27 0.27
47 55 0.54
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATCCTAGTTACATCTCA
Found at i:69717903 original size:93 final size:93
Alignment explanation
Indices: 69717776--69718027 Score: 373
Period size: 93 Copynumber: 2.7 Consensus size: 93
69717766 CGCCCATAAG
* *
69717776 CGAACTCGGGCTCAACTCAACGAGCTCAGG-CATTCGCATTCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATTCATAAGTGAACTCGGACTCAACTC
69717840 AACGAGCTCGGATCCCTAGTTACATCTCA
65 AACGAGCTCGGATCCCTAGTTACATCTCA
*
69717869 CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCA-TCAATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATTC-ATAAGTGAACTCGGACTCAACTC
* * * *
69717933 AACGAGTTTGGATGCCTAGTTACATTTCA
65 AACGAGCTCGGATCCCTAGTTACATCTCA
* * * *
69717962 TGAACTCGGATTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATTCATAAGTGAACTCGGACTCAACTCA
69718027 A
66 A
69718028 TGAACTCGAT
Statistics
Matches: 144, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
92 4 0.03
93 139 0.97
94 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATTCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATCCCTAGTTACATCTCA
Found at i:69719896 original size:40 final size:40
Alignment explanation
Indices: 69719755--69719939 Score: 162
Period size: 40 Copynumber: 4.7 Consensus size: 40
69719745 TCGAATGATG
* *
69719755 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * * *
69719795 TTCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
*
69719835 TCTGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * * *
69719874 CCCGGGTTAAGTCCCGAAGGCATTCGGGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
**
69719915 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69719940 AGCGAGTCGT
Statistics
Matches: 114, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
39 32 0.28
40 73 0.64
41 9 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:69719921 original size:79 final size:81
Alignment explanation
Indices: 69719755--69719939 Score: 200
Period size: 79 Copynumber: 2.3 Consensus size: 81
69719745 TCGAATGATG
* ** *
69719755 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATTCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
* *
69719819 CGTGCGAGTTAATAAA
66 CGGGCGAGTCAATAAA
* * **
69719835 TCTGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
69719897 TCGGGCGAGTCACTATAA
65 TCGGGCGAGTCAATA-AA
**
69719915 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69719940 AGCGAGTCGT
Statistics
Matches: 87, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 53 0.61
80 33 0.38
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGGGCGAGTCAATAAA
Found at i:69723246 original size:9 final size:9
Alignment explanation
Indices: 69723232--69723256 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
69723222 ATGGACCGAG
69723232 ATGGGCCAT
1 ATGGGCCAT
69723241 ATGGGCCAT
1 ATGGGCCAT
69723250 ATGGGCC
1 ATGGGCC
69723257 CAAGTAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.24, G:0.36, T:0.20
Consensus pattern (9 bp):
ATGGGCCAT
Found at i:69723348 original size:27 final size:27
Alignment explanation
Indices: 69723318--69723397 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
69723308 AATCTCATAT
* *
69723318 CTGTAGGCTAGTATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
69723345 CTGTAGGGTAGAATTATTGAAATGCCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
69723372 CTATAGGGTAGAATTACTG-AATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
69723398 TTGGTTTACA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
26 6 0.13
27 40 0.87
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATACCC
Found at i:69723422 original size:27 final size:27
Alignment explanation
Indices: 69723391--69723750 Score: 164
Period size: 27 Copynumber: 13.3 Consensus size: 27
69723381 AGAATTACTG
* *
69723391 AATACCCTTGGTTTACAAAATTATCAA
1 AATACCCTTGATTTACAAAATTACCAA
*
69723418 AATACCCTTGA-TTAGAAAAATTACCAA
1 AATACCCTTGATTTA-CAAAATTACCAA
* **
69723445 AATACCCCT-AGTTTGTAAAATTACCAA
1 AATACCCTTGA-TTTACAAAATTACCAA
*** * *
69723472 AATACCCTTGATTTGTGAAATTATCGA
1 AATACCCTTGATTTACAAAATTACCAA
** * *
69723499 AATA-CCTTCGACCTATAAAATTACCGA
1 AATACCCTT-GATTTACAAAATTACCAA
* * * ** ***
69723526 AATACTC-TCACTTGTAAAATTATTGA
1 AATACCCTTGATTTACAAAATTACCAA
* **
69723552 AATACCCTTCATTTGTAAAATTACCAA
1 AATACCCTTGATTTACAAAATTACCAA
* * **
69723579 AATACCCCTAATTTGGAAAATTATCC-A
1 AATACCCTTGATTTACAAAATTA-CCAA
*
69723606 AATACCCTTGATTTAGAAAATTA-CAGA
1 AATACCCTTGATTTACAAAATTACCA-A
* *
69723633 AATACCCCTGATTTACAAAATTA-TAGA
1 AATACCCTTGATTTACAAAATTACCA-A
**
69723660 AATACATTTGACTTT-CAAAAATTA-CAGA
1 AATACCCTTGA-TTTAC-AAAATTACCA-A
* ** *
69723688 AATACCATTGGCTTGCAAAATTACCGAA
1 AATACCCTTGATTTACAAAATTACC-AA
* * * *
69723716 AAT-CCCTTGGTTTATAGATTTACCAA
1 AATACCCTTGATTTACAAAATTACCAA
*
69723742 AACACCCTT
1 AATACCCTT
69723751 TGTAGGGTGA
Statistics
Matches: 267, Mismatches: 50, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
25 1 0.00
26 31 0.12
27 201 0.75
28 33 0.12
29 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AATACCCTTGATTTACAAAATTACCAA
Found at i:69723493 original size:54 final size:54
Alignment explanation
Indices: 69723407--69723664 Score: 193
Period size: 54 Copynumber: 4.8 Consensus size: 54
69723397 CTTGGTTTAC
* * * * *
69723407 AAAATTATCAAAATACCCTTGATTAGAAAAATTACCAAAATACCCCTAG-TTTGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATA-CCCTAGATTTGT
* * * * * ** *
69723461 AAAATTACCAAAATACCCTTGATTTGTGAAATTATCGAAATACCTTCGACCTAT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCTAGATTTGT
* * * * ** **
69723515 AAAATTACCGAAATA-CTCTCACTTGTAAAATTATTGAAATACCCTTCATTTGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCTAGATTTGT
* * *
69723568 AAAATTACCAAAATACCCCTAATTTGGAAAATTATCC-AAATACCCTTGATTTAG-
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTA-CCGAAATACCCTAGATTT-GT
** **
69723622 AAAATTA-CAGAAATACCCCTGATTTACAAAATTATAGAAATAC
1 AAAATTACCA-AAATACCCCTGATTTGTAAAATTACCGAAATAC
69723665 ATTTGACTTT
Statistics
Matches: 161, Mismatches: 37, Indels: 12
0.77 0.18 0.06
Matches are distributed among these distances:
53 46 0.29
54 114 0.71
55 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.31
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCTAGATTTGT
Found at i:69723545 original size:107 final size:107
Alignment explanation
Indices: 69723434--69723637 Score: 261
Period size: 107 Copynumber: 1.9 Consensus size: 107
69723424 CTTGATTAGA
* *
69723434 AAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCTTGATTTGTG-AAATTATC
1 AAAATTACCAAAATACCCCTCA-TTTGTAAAATTACCAAAATACCCCTAATTTG-GAAAATTATC
* * *
69723497 GAAATA-CCTTCGACCTATAAAATTACCGAAATACTCTCACTTGT
64 CAAATACCCTT-GACCTAGAAAATTACAGAAATACTCTCACTTGT
*** *
69723541 AAAATTATTGAAATACCCTTCATTTGTAAAATTACCAAAATACCCCTAATTTGGAAAATTATCCA
1 AAAATTACCAAAATACCCCTCATTTGTAAAATTACCAAAATACCCCTAATTTGGAAAATTATCCA
**
69723606 AATACCCTTGATTTAGAAAATTACAGAAATAC
66 AATACCCTTGACCTAGAAAATTACAGAAATAC
69723638 CCCTGATTTA
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
106 1 0.01
107 77 0.93
108 5 0.06
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.31
Consensus pattern (107 bp):
AAAATTACCAAAATACCCCTCATTTGTAAAATTACCAAAATACCCCTAATTTGGAAAATTATCCA
AATACCCTTGACCTAGAAAATTACAGAAATACTCTCACTTGT
Found at i:69723653 original size:134 final size:134
Alignment explanation
Indices: 69723407--69723664 Score: 326
Period size: 134 Copynumber: 1.9 Consensus size: 134
69723397 CTTGGTTTAC
* * *
69723407 AAAATTATCAAAATACCCTTGATTAGAAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTATCAAAATACCCTTCATTAGAAAAATTACCAAAATACCCCTAATTTGGAAAATTACCAA
* * * *
69723472 AATACCCTTGATTTGTGAAATTATCGAAATACCTTCGACCTATAAAATTACCGAAATACTCTCAC
66 AATACCCTTGATTTGTAAAATTATCGAAATACCCTCGACCTACAAAATTACAGAAATACTCTCAC
69723537 TTGT
131 TTGT
** * *
69723541 AAAATTATTGAAATACCCTTCATTTGTAAAATTACCAAAATACCCCTAATTTGGAAAATTATCC-
1 AAAATTATCAAAATACCCTTCATTAGAAAAATTACCAAAATACCCCTAATTTGGAAAATTA-CCA
** *
69723605 AAATACCCTTGATTTAG-AAAATTA-CAGAAATACCC-CTGATTTACAAAATTATAGAAATAC
65 AAATACCCTTGATTT-GTAAAATTATC-GAAATACCCTC-GACCTACAAAATTACAGAAATAC
69723665 ATTTGACTTT
Statistics
Matches: 106, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
133 2 0.02
134 101 0.95
135 3 0.03
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.31
Consensus pattern (134 bp):
AAAATTATCAAAATACCCTTCATTAGAAAAATTACCAAAATACCCCTAATTTGGAAAATTACCAA
AATACCCTTGATTTGTAAAATTATCGAAATACCCTCGACCTACAAAATTACAGAAATACTCTCAC
TTGT
Found at i:69724033 original size:41 final size:41
Alignment explanation
Indices: 69723995--69724110 Score: 169
Period size: 41 Copynumber: 2.8 Consensus size: 41
69723985 AGAAATTGCA
*
69723995 GATCGCATGGTTGCTTGACGATCGTGGATCCACTAATTGAG
1 GATCGCATGGTTGCTTGACGACCGTGGATCCACTAATTGAG
* * ** *
69724036 GATTGCATGGTTGCTTGACGACCGTGGATCCGCCGATTAAG
1 GATCGCATGGTTGCTTGACGACCGTGGATCCACTAATTGAG
*
69724077 GATCGCATGGTTGCTTGACGACCGCGGATCCACT
1 GATCGCATGGTTGCTTGACGACCGTGGATCCACT
69724111 GGTGGCTTTT
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 65 1.00
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (41 bp):
GATCGCATGGTTGCTTGACGACCGTGGATCCACTAATTGAG
Found at i:69724291 original size:22 final size:22
Alignment explanation
Indices: 69724265--69724316 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
69724255 ATTATGGTTT
69724265 TGTGCCAACCT-ACATATAGCTG
1 TGTGCCAACCTGA-ATATAGCTG
* *
69724287 TGTGCCAACCTGATTATGGCTG
1 TGTGCCAACCTGAATATAGCTG
69724309 TGTGCCAA
1 TGTGCCAA
69724317 ACGTATTTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 26 0.96
23 1 0.04
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (22 bp):
TGTGCCAACCTGAATATAGCTG
Found at i:69724544 original size:22 final size:22
Alignment explanation
Indices: 69724519--69724565 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
69724509 GTTACTGTGA
*
69724519 TGTTTACGGCTATGTGTTGTCC
1 TGTTTACGGCTATGTATTGTCC
*
69724541 TGTTTATGGCTATGTATTGTCC
1 TGTTTACGGCTATGTATTGTCC
69724563 TGT
1 TGT
69724566 CTACAGCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.11, C:0.15, G:0.26, T:0.49
Consensus pattern (22 bp):
TGTTTACGGCTATGTATTGTCC
Found at i:69726563 original size:19 final size:19
Alignment explanation
Indices: 69726539--69726575 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
69726529 AGTAAATTTT
69726539 GATATTATTTAGATTGAGA
1 GATATTATTTAGATTGAGA
69726558 GATATTATTTAGATTGAG
1 GATATTATTTAGATTGAG
69726576 TTAATCAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.22, T:0.43
Consensus pattern (19 bp):
GATATTATTTAGATTGAGA
Found at i:69726927 original size:28 final size:28
Alignment explanation
Indices: 69726853--69726929 Score: 93
Period size: 28 Copynumber: 2.8 Consensus size: 28
69726843 TATACATATG
* *
69726853 TGGCACTTAGTGTGCGAAATATTGAGAA
1 TGGCACTTAGTGTGCGAGATATTAAGAA
* * *
69726881 TGACACTTGGTGTGTGAGATATTAAGTAA
1 TGGCACTTAGTGTGCGAGATATTAAG-AA
69726910 -GGCACTTAGTGTGCGAGATA
1 TGGCACTTAGTGTGCGAGATA
69726930 GCGAAGATGC
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
28 38 0.95
29 2 0.05
ACGTcount: A:0.30, C:0.10, G:0.30, T:0.30
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAGATATTAAGAA
Found at i:69730848 original size:40 final size:43
Alignment explanation
Indices: 69730773--69730885 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 43
69730763 TCCCTGACGT
* *
69730773 GGTCTTACATGCTATCACATATCGATGCCACTGTCCTAGACAA
1 GGTCTTACATGCAATCACATATCGATGCCACTGTCCCAGACAA
* *
69730816 GG-CTTACATG-AATCAAATA-CGATGCCGA-TGTCCCAGACAT
1 GGTCTTACATGCAATCACATATCGATGCC-ACTGTCCCAGACAA
* *
69730856 GGTCTTACACGTAATCACATATCGATGCCA
1 GGTCTTACATGCAATCACATATCGATGCCA
69730886 ACATTCTAGA
Statistics
Matches: 60, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
40 19 0.32
41 15 0.25
42 17 0.28
43 9 0.15
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (43 bp):
GGTCTTACATGCAATCACATATCGATGCCACTGTCCCAGACAA
Found at i:69730897 original size:43 final size:41
Alignment explanation
Indices: 69730772--69730909 Score: 124
Period size: 43 Copynumber: 3.3 Consensus size: 41
69730762 GTCCCTGACG
*
69730772 TGGTCTTACATGCT-ATCACATATCGATGCCACTGTCCTAGACA
1 TGGTCTTACACG-TAATCACATATCGATGCCACT-T-CTAGACA
* * * *
69730815 AGG-CTTACATG-AATCAAATA-CGATGCCGA-TGTCCCAGACA
1 TGGTCTTACACGTAATCACATATCGATGCC-ACT-T-CTAGACA
69730855 TGGTCTTACACGTAATCACATATCGATGCCAACATTCTAGACA
1 TGGTCTTACACGTAATCACATATCGATGCC-AC-TTCTAGACA
69730898 TGGTCTTACACG
1 TGGTCTTACACG
69730910 AGAACACATA
Statistics
Matches: 80, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
40 19 0.24
41 15 0.19
42 16 0.20
43 28 0.35
44 1 0.01
45 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (41 bp):
TGGTCTTACACGTAATCACATATCGATGCCACTTCTAGACA
Found at i:69733834 original size:15 final size:15
Alignment explanation
Indices: 69733814--69733865 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
69733804 ACTACAAAAA
69733814 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
69733829 ATTTATAATTATAATAAAT
1 ATTTATTA-T-TAAT--AT
*
69733848 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
69733863 ATT
1 ATT
69733866 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:69733851 original size:19 final size:19
Alignment explanation
Indices: 69733827--69733863 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
69733817 TATTATTAAT
*
69733827 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
69733846 ATATTTATTATTAAAATA
1 ATATTTATAATTAAAATA
69733864 TTAATATTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:69733923 original size:15 final size:16
Alignment explanation
Indices: 69733903--69733933 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
69733893 AATAATATCA
69733903 TTTAAAA-TTATTATT
1 TTTAAAATTTATTATT
69733918 TTTAAAATTTATTATT
1 TTTAAAATTTATTATT
69733934 AAATGAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTAAAATTTATTATT
Found at i:69736107 original size:25 final size:26
Alignment explanation
Indices: 69736071--69736121 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
69736061 TTACATTCGT
* *
69736071 AATATGTATTTATGATACGTTCATAA
1 AATATGTATTTATGACACATTCATAA
69736097 AATAT-TATTTATGACACATTCATAA
1 AATATGTATTTATGACACATTCATAA
69736122 TGCTTACTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (26 bp):
AATATGTATTTATGACACATTCATAA
Found at i:69737180 original size:16 final size:16
Alignment explanation
Indices: 69737159--69737189 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
69737149 TTCCATAAAT
69737159 CCATGTTCTATCAACG
1 CCATGTTCTATCAACG
69737175 CCATGTTCTATCAAC
1 CCATGTTCTATCAAC
69737190 CTGCACTAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.32, G:0.10, T:0.32
Consensus pattern (16 bp):
CCATGTTCTATCAACG
Found at i:69738488 original size:38 final size:38
Alignment explanation
Indices: 69738437--69738511 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
69738427 GTTATTTTCG
69738437 CACTGATCTTCCTTTTCCTTTATTCCAGCTTCACATTA
1 CACTGATCTTCCTTTTCCTTTATTCCAGCTTCACATTA
69738475 CACTGATCTTCCTTTTCCTTTATTCCAGCTTCACATT
1 CACTGATCTTCCTTTTCCTTTATTCCAGCTTCACATT
69738512 TTTTTGAATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.17, C:0.32, G:0.05, T:0.45
Consensus pattern (38 bp):
CACTGATCTTCCTTTTCCTTTATTCCAGCTTCACATTA
Found at i:69740004 original size:93 final size:93
Alignment explanation
Indices: 69739845--69740016 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
69739835 GCCCATAAGT
* * *
69739845 GAACTTGGACTCAAATCAACGAGCTCGGGCATTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69739910 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
69739938 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATGCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69740003 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
69740017 CAAATCCCAG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69740012 original size:46 final size:45
Alignment explanation
Indices: 69739838--69740012 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 45
69739828 GTAACCCGCC
* * * * *
69739838 CATAAGTGAACTTGGACTCAAATCAACGAGCTCGGGCATTCGCAT
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
69739883 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 -CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
69739933 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
69739976 GCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 -CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69740013 TGCCCAAATC
Statistics
Matches: 108, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (45 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:69742432 original size:30 final size:30
Alignment explanation
Indices: 69742388--69742476 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
69742378 CAAAGATAAC
69742388 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
69742417 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
69742447 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
69742477 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:69742436 original size:15 final size:15
Alignment explanation
Indices: 69742388--69742467 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
69742378 CAAAGATAAC
*
69742388 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
69742402 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
69742417 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
69742432 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
69742447 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
69742462 AAGAAA
1 AAGAAA
69742468 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:69742476 original size:15 final size:15
Alignment explanation
Indices: 69742399--69742476 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
69742389 AGAAAACCGA
69742399 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
69742414 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
69742428 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
69742443 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
69742459 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
69742474 ATA
1 ATA
69742477 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:69745548 original size:93 final size:93
Alignment explanation
Indices: 69745389--69745560 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
69745379 GCCCATAAGT
* * * * *
69745389 GAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69745454 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
69745482 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69745547 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
69745561 CAAATATCCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69745556 original size:46 final size:46
Alignment explanation
Indices: 69745381--69745556 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
69745371 TGTAACCCGC
* * * * * *
69745381 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
69745427 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
69745477 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
69745520 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69745557 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 62 0.57
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:69745575 original size:46 final size:46
Alignment explanation
Indices: 69745432--69745575 Score: 136
Period size: 46 Copynumber: 3.1 Consensus size: 46
69745422 CGTATCCATG
* * *
69745432 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATCCC
* * *
69745480 A-CGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC--C
*
69745525 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
69745571 AGTGA
1 AGTGA
69745576 CATGTCACTT
Statistics
Matches: 77, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
41 1 0.01
43 4 0.05
45 1 0.01
46 34 0.44
47 29 0.38
48 5 0.06
50 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
Found at i:69747214 original size:22 final size:23
Alignment explanation
Indices: 69747183--69747231 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
69747173 AAATCATAAA
69747183 AAAATTAAATAGA-AAA-AAATTAT
1 AAAATTAAATA-ATAAACAAATT-T
69747206 AAAA-TAAATAATAAACAAATTT
1 AAAATTAAATAATAAACAAATTT
69747228 AAAA
1 AAAA
69747232 AACTTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
21 1 0.04
22 14 0.58
23 9 0.38
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (23 bp):
AAAATTAAATAATAAACAAATTT
Found at i:69747232 original size:23 final size:22
Alignment explanation
Indices: 69747182--69747232 Score: 52
Period size: 23 Copynumber: 2.2 Consensus size: 22
69747172 CAAATCATAA
69747182 AAAAATTAAATAGAAAAAAATT
1 AAAAATTAAATAGAAAAAAATT
69747204 ATAAAA-TAAATA-ATAAACAAATTT
1 A-AAAATTAAATAGA-AAA-AAA-TT
69747228 AAAAA
1 AAAAA
69747233 ACTTTAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
21 1 0.04
22 10 0.40
23 11 0.44
24 3 0.12
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (22 bp):
AAAAATTAAATAGAAAAAAATT
Found at i:69748241 original size:20 final size:20
Alignment explanation
Indices: 69748216--69748253 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
69748206 AAATAGGAGC
* *
69748216 ACATGCCTGTGTGGCCTGGG
1 ACATGCCCGTCTGGCCTGGG
69748236 ACATGCCCGTCTGGCCTG
1 ACATGCCCGTCTGGCCTG
69748254 CCCGTGGGGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.32, G:0.34, T:0.24
Consensus pattern (20 bp):
ACATGCCCGTCTGGCCTGGG
Found at i:69762515 original size:29 final size:29
Alignment explanation
Indices: 69762482--69762583 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
69762472 TGACGAGATC
69762482 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
69762511 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
69762540 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
69762569 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
69762584 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:69779408 original size:26 final size:27
Alignment explanation
Indices: 69779353--69779539 Score: 179
Period size: 27 Copynumber: 7.0 Consensus size: 27
69779343 AACATACCAA
*
69779353 GAAATGGAAGCCTTTGTGACAATCTAT
1 GAAATGGAAGCCTTTGTGGCAATCTAT
*
69779380 GAAATGGAAGCTTTTGTGGCATAT-T-T
1 GAAATGGAAGCCTTTGTGGCA-ATCTAT
* *
69779406 GAAATGGAAGCATTTGTGGTAATCTAT
1 GAAATGGAAGCCTTTGTGGCAATCTAT
**
69779433 GAAATGGAAGCCTTTGTGGTGTATCTA-
1 GAAATGGAAGCCTTTGTGG-CAATCTAT
* * **
69779460 -AAATGAAATCCTTTGTGGTGTATC-A-
1 GAAATGGAAGCCTTTGTGG-CAATCTAT
** *
69779485 GAAATATAAGCCTTTGTGGAAATCTAT
1 GAAATGGAAGCCTTTGTGGCAATCTAT
*
69779512 GAAATGAAAGCCTTTGTGGCAATCTAT
1 GAAATGGAAGCCTTTGTGGCAATCTAT
69779539 G
1 G
69779540 GAAAGGCATG
Statistics
Matches: 136, Mismatches: 17, Indels: 14
0.81 0.10 0.08
Matches are distributed among these distances:
25 6 0.04
26 59 0.43
27 64 0.47
28 7 0.05
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (27 bp):
GAAATGGAAGCCTTTGTGGCAATCTAT
Found at i:69779464 original size:53 final size:52
Alignment explanation
Indices: 69779354--69779539 Score: 178
Period size: 53 Copynumber: 3.5 Consensus size: 52
69779344 ACATACCAAG
* * * * *
69779354 AAATGGAAGCCTTTGTGACAATCTATGAAATGGAAGCTTTTGTGGCATATTTG
1 AAATGAAAGCCTTTGTGGCAATCTATGAAATGGAAGCCTTTGTGG-ATATCTA
* * * *
69779407 AAATGGAAGCATTTGTGGTAATCTATGAAATGGAAGCCTTTGTGGTGTATCTA
1 AAATGAAAGCCTTTGTGGCAATCTATGAAATGGAAGCCTTTGTGG-ATATCTA
* ** ** *
69779460 AAATGAAATCCTTTGTGGTGTATC-A-GAAATATAAGCCTTTGTGGAAATCTA
1 AAATGAAAGCCTTTGTGG-CAATCTATGAAATGGAAGCCTTTGTGGATATCTA
69779511 TGAAATGAAAGCCTTTGTGGCAATCTATG
1 --AAATGAAAGCCTTTGTGGCAATCTATG
69779540 GAAAGGCATG
Statistics
Matches: 108, Mismatches: 20, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
51 5 0.05
52 20 0.19
53 79 0.73
54 4 0.04
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (52 bp):
AAATGAAAGCCTTTGTGGCAATCTATGAAATGGAAGCCTTTGTGGATATCTA
Found at i:69779709 original size:27 final size:27
Alignment explanation
Indices: 69779669--69779744 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
69779659 ATGATATGTG
*
69779669 TGGTTAACTCTGAAGGAATAGTACATA
1 TGGTAAACTCTGAAGGAATAGTACATA
*
69779696 TGGTAAACTTTGAAGGAATAGTACATA
1 TGGTAAACTCTGAAGGAATAGTACATA
* *
69779723 TCCG--AACTCTAAAGGAATAGTA
1 T-GGTAAACTCTGAAGGAATAGTA
69779745 TGTATGGCGA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 16 0.37
27 26 0.60
28 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.28
Consensus pattern (27 bp):
TGGTAAACTCTGAAGGAATAGTACATA
Found at i:69782211 original size:40 final size:40
Alignment explanation
Indices: 69782156--69782406 Score: 248
Period size: 40 Copynumber: 6.5 Consensus size: 40
69782146 TGAATGATAC
* *
69782156 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
69782196 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * ** *
69782236 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
*
69782276 -CGGGCTAAGACCCGAAGGCATTCGTGCT--TG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * ** *
69782312 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
69782352 -CGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
*
69782391 CC-GGCTAA-ATCCGAAG
1 CCGGGCTAAGACCCGAAG
69782407 AAACTCGGTT
Statistics
Matches: 169, Mismatches: 35, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
36 3 0.02
37 27 0.16
38 7 0.04
39 62 0.37
40 68 0.40
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:69782329 original size:76 final size:76
Alignment explanation
Indices: 69782156--69782382 Score: 330
Period size: 76 Copynumber: 2.9 Consensus size: 76
69782146 TGAATGATAC
* * * ** *
69782156 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTTACCAAAT-CGGGCTAAGACCCGAAGGCATTCG
69782221 TGCGAGTTGTTATAT
65 TGC---TTGTTATAT
69782236 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTTACCAAATCGGGCTAAGACCCGAAGGCATTCGT
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTTACCAAATCGGGCTAAGACCCGAAGGCATTCGT
69782301 GCTTGTTATAT
66 GCTTGTTATAT
* *
69782312 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCGGGTTAAGACCCGAAGGCAATT-G
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTTACCAAATCGGGCTAAGACCCGAAGGC-ATTCG
69782376 TGCTTGT
65 TGCTTGT
69782383 GGTTATATCC
Statistics
Matches: 138, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
76 74 0.54
77 3 0.02
79 27 0.20
80 34 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (76 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTTACCAAATCGGGCTAAGACCCGAAGGCATTCGT
GCTTGTTATAT
Found at i:69795408 original size:40 final size:39
Alignment explanation
Indices: 69795363--69795492 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
69795353 CGGAATATAA
69795363 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
69795403 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
69795443 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
69795483 CCGGATATAA
1 CCGGATATAA
69795493 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:69795507 original size:40 final size:40
Alignment explanation
Indices: 69795379--69795530 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
69795369 ATAACCATGT
* * *
69795379 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
69795419 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
69795459 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
69795499 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
69795531 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:69795513 original size:80 final size:80
Alignment explanation
Indices: 69795379--69795528 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
69795369 ATAACCATGT
*
69795379 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
69795443 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
69795459 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
69795522 CCCGGAT
64 CCCGGAT
69795529 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:69807885 original size:46 final size:46
Alignment explanation
Indices: 69807835--69808001 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 46
69807825 TGGTTGAGCA
69807835 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
69807881 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
69807926 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
69807974 CCCGAGCTCGTTGAGTTGAGTCCGAGTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTT
69808002 TGGTTATGGG
Statistics
Matches: 101, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 56 0.55
47 28 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:69807991 original size:93 final size:93
Alignment explanation
Indices: 69807832--69808001 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
69807822 GGATGGTTGA
* *
69807832 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69807897 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
69807925 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69807990 TGAGTCCGAGTT
66 TGAGTCCGAGTT
69808002 TGGTTATGGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:69809762 original size:68 final size:70
Alignment explanation
Indices: 69809690--69809887 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
69809680 ATACCCTGTA
* * * *
69809690 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
69809752 ATAAAT
65 ATAAAT
*
69809758 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
69809823 ATAAAT
65 ATAAAT
*
69809829 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
69809888 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:69809801 original size:41 final size:41
Alignment explanation
Indices: 69809756--69809873 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
69809746 TGAAAGATAA
69809756 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
69809797 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
69809827 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
69809868 ATGTAG
1 ATGTAG
69809874 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:69809813 original size:71 final size:71
Alignment explanation
Indices: 69809724--69809887 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
69809714 GAGATGTATC
69809724 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
69809789 AGGACA
66 AGGACA
69809795 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
69809860 AGGACA
66 AGGACA
69809866 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
69809888 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:69811838 original size:66 final size:68
Alignment explanation
Indices: 69811762--69811948 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
69811752 TAGTACCACT
*
69811762 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
69811824 CACG
65 CACG
69811828 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
69811893 ATCACG
63 ATCACG
69811899 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
69811949 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:69811873 original size:71 final size:71
Alignment explanation
Indices: 69811785--69811948 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
69811775 CGATTTGTCT
69811785 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
69811850 CTTTCA
66 CTTTCA
69811856 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
69811921 CTTTCA
66 CTTTCA
69811927 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
69811949 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:69811986 original size:71 final size:70
Alignment explanation
Indices: 69811785--69811982 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
69811775 CGATTTGTCT
* * *
69811785 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
69811850 CTTTCA
65 CTTTCA
* * *
69811856 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
69811921 CTTTCA
65 CTTTCA
* *
69811927 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
69811983 TACAGGGTAT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:69816838 original size:24 final size:24
Alignment explanation
Indices: 69816806--69816917 Score: 113
Period size: 24 Copynumber: 4.7 Consensus size: 24
69816796 GGCTATCTCA
*
69816806 AATGCACTATGTGTGCAATTTATT
1 AATGCACTATGTGTGCAATTTACT
*
69816830 AATGCACTATGTGTGCGATTTACT
1 AATGCACTATGTGTGCAATTTACT
* *
69816854 -ATGGCACTATGTGTGCGATTTGCT
1 AAT-GCACTATGTGTGCAATTTACT
** *
69816878 -ATGGCACTATGTGTGCGAACATAAT
1 AAT-GCACTATGTGTGC-AATTTACT
69816903 AA-GCACTATGTGTGC
1 AATGCACTATGTGTGC
69816918 CACATTCGGT
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
23 2 0.03
24 71 0.92
25 3 0.04
26 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (24 bp):
AATGCACTATGTGTGCAATTTACT
Found at i:69819716 original size:40 final size:40
Alignment explanation
Indices: 69819657--69819864 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
69819647 CATTGGAATG
* * *
69819657 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* **
69819697 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGTGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * **
69819737 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
69819777 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * ** * * *
69819817 ATAACCGAGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
69819857 ATATCCGG
1 ATATCCGG
69819865 TTAAATTCCG
Statistics
Matches: 137, Mismatches: 29, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
39 3 0.02
40 132 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:69822928 original size:21 final size:21
Alignment explanation
Indices: 69822889--69822928 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
69822879 TGTGACTTGA
*
69822889 ATTAAATTGAGTATGAATTAG
1 ATTAAATTGAGTATAAATTAG
69822910 ATTAAATTGATGT-TAAATT
1 ATTAAATTGA-GTATAAATT
69822929 CATTTATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (21 bp):
ATTAAATTGAGTATAAATTAG
Found at i:69825730 original size:28 final size:28
Alignment explanation
Indices: 69825698--69825767 Score: 108
Period size: 28 Copynumber: 2.5 Consensus size: 28
69825688 ACAGTAAGTC
69825698 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATT-AAACT
69825726 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATTAAACT
69825754 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69825768 CAATCTCATT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
28 34 0.85
29 5 0.12
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATTAAACT
Found at i:69832462 original size:45 final size:45
Alignment explanation
Indices: 69832398--69832486 Score: 117
Period size: 46 Copynumber: 2.0 Consensus size: 45
69832388 AAACATGTGT
* * *
69832398 CACATACATCCTGAACTCAG-CGCATAACTCAATGAGTTTAGATGC
1 CACATACATCATGAACTCAGAC-CACAACTCAAAGAGTTTAGATGC
*
69832443 CACATATATCATGAACTCAGAACCACAACTCAAAGAGTTTAGAT
1 CACATACATCATGAACTCAG-ACCACAACTCAAAGAGTTTAGAT
69832487 CACATAGTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
45 18 0.47
46 19 0.50
47 1 0.03
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.24
Consensus pattern (45 bp):
CACATACATCATGAACTCAGACCACAACTCAAAGAGTTTAGATGC
Found at i:69840328 original size:45 final size:45
Alignment explanation
Indices: 69840261--69840348 Score: 106
Period size: 45 Copynumber: 2.0 Consensus size: 45
69840251 AAACATGTGT
* * * * *
69840261 CACATACATCATGAATCCAGACCATAATTCAATGAGTTTAGATGC
1 CACATACATCAAGAATCCAGACCACAACTCAAAGAGTTCAGATGC
*
69840306 CACATATATCAAGAA-CTCAGACCACAACTCAAAGAGTTCAGAT
1 CACATACATCAAGAATC-CAGACCACAACTCAAAGAGTTCAGAT
69840349 CACATAGTTC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
44 1 0.03
45 35 0.97
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.23
Consensus pattern (45 bp):
CACATACATCAAGAATCCAGACCACAACTCAAAGAGTTCAGATGC
Found at i:69842996 original size:17 final size:17
Alignment explanation
Indices: 69842974--69843009 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
69842964 TTGCTATACA
69842974 TGCCATTATATAAATTG
1 TGCCATTATATAAATTG
69842991 TGCCATTATATAAATTG
1 TGCCATTATATAAATTG
69843008 TG
1 TG
69843010 ATAGTGTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (17 bp):
TGCCATTATATAAATTG
Found at i:69848124 original size:21 final size:21
Alignment explanation
Indices: 69848100--69848143 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
69848090 CCAACCACTC
69848100 TAATCGACAACTCCATCATGT
1 TAATCGACAACTCCATCATGT
69848121 TAATCGACAACTCCATCATGT
1 TAATCGACAACTCCATCATGT
69848142 TA
1 TA
69848144 GGCAACAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.27, G:0.09, T:0.30
Consensus pattern (21 bp):
TAATCGACAACTCCATCATGT
Found at i:69848151 original size:21 final size:21
Alignment explanation
Indices: 69848106--69848151 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
69848096 ACTCTAATCG
* *
69848106 ACAACTCCATCATGTTAATCG
1 ACAACTCCATCATGTTAAGCA
*
69848127 ACAACTCCATCATGTTAGGCA
1 ACAACTCCATCATGTTAAGCA
69848148 ACAA
1 ACAA
69848152 TTGCTTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.28, G:0.11, T:0.24
Consensus pattern (21 bp):
ACAACTCCATCATGTTAAGCA
Found at i:69850157 original size:18 final size:18
Alignment explanation
Indices: 69850119--69850157 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
69850109 GAGTTGAGAG
*
69850119 TTAGTGGGTTAGTGGGAT
1 TTAGTGGGTTAGTAGGAT
69850137 TTAGT-GGTTAGTAGGAGT
1 TTAGTGGGTTAGTAGGA-T
69850155 TTA
1 TTA
69850158 TGATAGATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.41
Consensus pattern (18 bp):
TTAGTGGGTTAGTAGGAT
Found at i:69850187 original size:15 final size:15
Alignment explanation
Indices: 69850167--69850199 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
69850157 ATGATAGATA
69850167 TTATTTTTT-TTATTT
1 TTATTTTTTATT-TTT
69850182 TTATTTTTTATTTTT
1 TTATTTTTTATTTTT
69850197 TTA
1 TTA
69850200 AATTTCGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.88
16 2 0.12
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (15 bp):
TTATTTTTTATTTTT
Found at i:69850190 original size:13 final size:13
Alignment explanation
Indices: 69850172--69850196 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69850162 AGATATTATT
69850172 TTTTTTATTTTTA
1 TTTTTTATTTTTA
69850185 TTTTTTATTTTT
1 TTTTTTATTTTT
69850197 TTAAATTTCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:69852923 original size:39 final size:39
Alignment explanation
Indices: 69852870--69853036 Score: 244
Period size: 39 Copynumber: 4.3 Consensus size: 39
69852860 TATGAGATTG
* * *
69852870 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
*
69852909 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
69852948 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
* * * * **
69852987 AATATATCCGGACTTGAGGTCTGCAGGCTACGTGCTAGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
69853026 AAAATATCCGG
1 AAAATATCCGG
69853037 GTTAAAGTCC
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 118 1.00
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (39 bp):
AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
Found at i:69853255 original size:2 final size:2
Alignment explanation
Indices: 69853248--69853273 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
69853238 AAGGCACGAA
69853248 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
69853274 GTGTGTGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69855085 original size:26 final size:26
Alignment explanation
Indices: 69855036--69855086 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
69855026 TTTTTCAAAC
**
69855036 TTCCACTGCTAAATGATTTGGTTAAA
1 TTCCACTGCTAAATGATTCAGTTAAA
69855062 TTCCACTGCTAAATGATTCAGTTAA
1 TTCCACTGCTAAATGATTCAGTTAA
69855087 CCTTAAAGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (26 bp):
TTCCACTGCTAAATGATTCAGTTAAA
Found at i:69861984 original size:68 final size:68
Alignment explanation
Indices: 69861838--69861993 Score: 158
Period size: 68 Copynumber: 2.2 Consensus size: 68
69861828 AGCCGATTTG
* * * * *
69861838 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGTGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGTGACCTAGCTACATA
*
69861903 TATC
65 TATA
*
69861907 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGTGACCTAGCTAC-
69861969 ATATAGTA
62 ATATA-TA
69861977 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
69861994 ACACATGATG
Statistics
Matches: 74, Mismatches: 7, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
67 1 0.01
68 34 0.46
69 7 0.09
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGTGACCTAGCTACATAT
ATA
Found at i:69866075 original size:68 final size:68
Alignment explanation
Indices: 69865929--69866084 Score: 158
Period size: 68 Copynumber: 2.2 Consensus size: 68
69865919 AGCCGATTTG
* * * * *
69865929 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGTGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGTGACCTAGCTACATA
*
69865994 TATC
65 TATA
*
69865998 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGTGACCTAGCTAC-
69866060 ATATAGTA
62 ATATA-TA
69866068 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
69866085 ACACATGATG
Statistics
Matches: 74, Mismatches: 7, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
67 1 0.01
68 34 0.46
69 7 0.09
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGTGACCTAGCTACATAT
ATA
Found at i:69868538 original size:29 final size:29
Alignment explanation
Indices: 69868505--69868562 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
69868495 ACGCCAGCCG
69868505 TATGTTGACAGATGCATAGCTCAATTATA
1 TATGTTGACAGATGCATAGCTCAATTATA
69868534 TATGTTGACAGATGCATAGCTCAATTATA
1 TATGTTGACAGATGCATAGCTCAATTATA
69868563 CCACCACGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (29 bp):
TATGTTGACAGATGCATAGCTCAATTATA
Done.