Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 227 of 410
Found at i:69877476 original size:40 final size:40
Alignment explanation
Indices: 69877411--69877578 Score: 223
Period size: 40 Copynumber: 4.2 Consensus size: 40
69877401 TCTTCGGAAT
* ** *
69877411 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
69877450 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
69877490 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
69877530 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGGC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
69877570 TTAGCCCGG
1 TTAGCCCGG
69877579 GTATCATTCA
Statistics
Matches: 114, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 3 0.03
40 110 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:69881377 original size:17 final size:18
Alignment explanation
Indices: 69881350--69881383 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
69881340 AATTAAATAT
69881350 ATGCATATTAATTTATTA
1 ATGCATATTAATTTATTA
69881368 ATGC-TATTAATTTATT
1 ATGCATATTAATTTATT
69881384 TAAACAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (18 bp):
ATGCATATTAATTTATTA
Found at i:69881713 original size:29 final size:30
Alignment explanation
Indices: 69881656--69881713 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
69881646 CTTTTGAAAA
* * *
69881656 TATTTACAAAAAGAGGCATCTAATTTTTAT
1 TATTTACAAAAAGAGGCAACCAAATTTTAT
*
69881686 TATTTACAAAAATA-GCAACCAAATTTTA
1 TATTTACAAAAAGAGGCAACCAAATTTTA
69881714 AAAATAATTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.36
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCAACCAAATTTTAT
Found at i:69891025 original size:38 final size:38
Alignment explanation
Indices: 69890974--69891090 Score: 128
Period size: 39 Copynumber: 3.0 Consensus size: 38
69890964 TAGATATACG
69890974 AATGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTT
1 AATGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTT
* ** * *
69891012 AATGCTGGTATTATATCATGACTTATAGT-CCGCAGGCCT
1 AATGCTGGTATTATATC-CGGGTTA-AATCCCGCAGGCTT
* *
69891051 AGTGCTGGTAATAGATATCCGGGTTAAATCCCGCAGGCTT
1 AATGCTGGT-AT-TATATCCGGGTTAAATCCCGCAGGCTT
69891091 TGTGCTAGAA
Statistics
Matches: 62, Mismatches: 12, Indels: 8
0.76 0.15 0.10
Matches are distributed among these distances:
38 17 0.27
39 23 0.37
40 17 0.27
41 5 0.08
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.31
Consensus pattern (38 bp):
AATGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTT
Found at i:69906537 original size:21 final size:22
Alignment explanation
Indices: 69906511--69906552 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
69906501 TCGTAAAAGA
69906511 TAAAAGTTGCCTA-CT-ATTTGT
1 TAAAAG-TGCCTATCTGATTTGT
69906532 TAAAAGTGCCTATCTGATTTG
1 TAAAAGTGCCTATCTGATTTG
69906553 ACTTATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
21 8 0.42
22 5 0.26
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (22 bp):
TAAAAGTGCCTATCTGATTTGT
Found at i:69908853 original size:271 final size:271
Alignment explanation
Indices: 69908370--69908902 Score: 994
Period size: 271 Copynumber: 2.0 Consensus size: 271
69908360 TTAAAATGAT
* *
69908370 TGGTAATATTGTAGCATAAATAATGTATGGTTTGGTATAGATATTGGCTGAAATGGTTGTGCATA
1 TGGTAATATTATAGCATAAATAATGTATGGTTTGCTATAGATATTGGCTGAAATGGTTGTGCATA
69908435 TATGCTTCGTTTGGTGCTTGTAGGTTAACCCAAATTGGGGTGGCAAATTGGCTATTCAAATGGCC
66 TATGCTTCGTTTGGTGCTTGTAGGTTAACCCAAATTGGGGTGGCAAATTGGCTATTCAAATGGCC
*
69908500 TACTTTTGTCCACATGCGCGTGTGTCTTAGCCGCGTTCGACACACAGTCATGTTACACGGCCGTG
131 TACTTTTGTCCACATGCGCGTGTGTCTTAGCCGCGTGCGACACACAGTCATGTTACACGGCCGTG
*
69908565 TGTCCTTTGGGGCACCATACAAATTAAAGTCAATATACCCTCAAGTGTTGACAAGGCTAGACACA
196 TGTCCTTTGGGGCACCATACAAATTAAAGTCAATATACCCTCAAGTGTTGACAAGACTAGACACA
69908630 CAAATAATGTA
261 CAAATAATGTA
*
69908641 TGGTAATGTTATAGCATAAATAATGTATGGTTTGCTATAGATATTGGCTGAAATGGTTGTGCATA
1 TGGTAATATTATAGCATAAATAATGTATGGTTTGCTATAGATATTGGCTGAAATGGTTGTGCATA
69908706 TATGCTTCGTTTGGTGCTTGTAGGTTAACCCAAATTGGGGTGGCAAATTGGCTATTCAAATGGCC
66 TATGCTTCGTTTGGTGCTTGTAGGTTAACCCAAATTGGGGTGGCAAATTGGCTATTCAAATGGCC
* *
69908771 TACTTTTGTCCACATGGGCGTGTGTCTTAGCCGCGTGCGACACACAGTCATGTTACATGGCCGTG
131 TACTTTTGTCCACATGCGCGTGTGTCTTAGCCGCGTGCGACACACAGTCATGTTACACGGCCGTG
*
69908836 TGTCCTTTGGGGCACCATACAAATTAAAGTCAATATACCCTTAAGTGTTGACAAGACTAGACACA
196 TGTCCTTTGGGGCACCATACAAATTAAAGTCAATATACCCTCAAGTGTTGACAAGACTAGACACA
69908901 CA
261 CA
69908903 GGTGTGTCTA
Statistics
Matches: 254, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
271 254 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (271 bp):
TGGTAATATTATAGCATAAATAATGTATGGTTTGCTATAGATATTGGCTGAAATGGTTGTGCATA
TATGCTTCGTTTGGTGCTTGTAGGTTAACCCAAATTGGGGTGGCAAATTGGCTATTCAAATGGCC
TACTTTTGTCCACATGCGCGTGTGTCTTAGCCGCGTGCGACACACAGTCATGTTACACGGCCGTG
TGTCCTTTGGGGCACCATACAAATTAAAGTCAATATACCCTCAAGTGTTGACAAGACTAGACACA
CAAATAATGTA
Found at i:69909859 original size:21 final size:20
Alignment explanation
Indices: 69909835--69909880 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
69909825 CTTTAGTCTT
* *
69909835 GATGATGAATCTGGCTTTTGA
1 GATGATCAATC-GGCTTCTGA
69909856 GATGGATCAATCGGCTTCTGA
1 GAT-GATCAATCGGCTTCTGA
69909877 GATG
1 GATG
69909881 GAACCCAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 1 0.05
21 14 0.64
22 7 0.32
ACGTcount: A:0.24, C:0.13, G:0.30, T:0.33
Consensus pattern (20 bp):
GATGATCAATCGGCTTCTGA
Found at i:69909881 original size:21 final size:22
Alignment explanation
Indices: 69909842--69909882 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
69909832 CTTGATGATG
*
69909842 AATCTGGCTTTTGAGATGGATC
1 AATCTGGCTTCTGAGATGGATC
69909864 AATC-GGCTTCTGAGATGGA
1 AATCTGGCTTCTGAGATGGA
69909883 ACCCAAAACG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (22 bp):
AATCTGGCTTCTGAGATGGATC
Found at i:69919779 original size:39 final size:40
Alignment explanation
Indices: 69919657--69919838 Score: 142
Period size: 39 Copynumber: 4.6 Consensus size: 40
69919647 GACTCGCTCA
** * * *
69919657 AATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATT-TATTAATTCGCACG
* * * *
69919697 AATGCCTTCGGGACTTA-ACCGGGTTTAGTAACTT-GCACA
1 AATGCCTTCGGGACTTAGCCCGGATTTATTAA-TTCGCACG
69919736 AATGCCTTCGGG-CTTAGCCCGGATTTATTAATTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATTTATTAATTCGCACG
* * * * * *
69919775 AATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAGCCCGGATTTA-TTAATTCGCACG
*
69919815 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
69919839 CATCATTCGA
Statistics
Matches: 115, Mismatches: 19, Indels: 16
0.77 0.13 0.11
Matches are distributed among these distances:
38 8 0.07
39 49 0.43
40 47 0.41
41 11 0.10
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTATTAATTCGCACG
Found at i:69919838 original size:40 final size:40
Alignment explanation
Indices: 69919650--69919838 Score: 147
Period size: 40 Copynumber: 4.8 Consensus size: 40
69919640 ATATAACGAC
* ** * *
69919650 TCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGAC-
1 TCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACT
* * * *
69919690 TCGCACGAATGCCTTCGGGACTTA-ACCGGGTTTAGTAACT
1 TCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTAACT
* *
69919730 T-GCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTAA-T
1 TCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACT
* * * *
69919768 TCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACT
1 TCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTAACT
*
69919809 TAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TCGCACAAAGCCTTCGGGACTTAGCCCGGA
69919839 CATCATTCGA
Statistics
Matches: 117, Mismatches: 22, Indels: 20
0.74 0.14 0.13
Matches are distributed among these distances:
38 10 0.09
39 45 0.38
40 51 0.44
41 11 0.09
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
TCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTAACT
Found at i:69930084 original size:30 final size:30
Alignment explanation
Indices: 69930047--69930177 Score: 160
Period size: 30 Copynumber: 4.5 Consensus size: 30
69930037 GACAAGATTG
* * *
69930047 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
69930077 ACACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
69930105 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
69930135 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
69930164 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69930178 GATTCACTAT
Statistics
Matches: 90, Mismatches: 9, Indels: 5
0.87 0.09 0.05
Matches are distributed among these distances:
28 22 0.24
29 20 0.22
30 48 0.53
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:69930140 original size:58 final size:58
Alignment explanation
Indices: 69930047--69930177 Score: 165
Period size: 58 Copynumber: 2.2 Consensus size: 58
69930037 GACAAGATTG
* * * * * *
69930047 GCACTAAGTGTGCGGGTTTAAAATTGTACAACACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAACACTAAGTGTGCGAG-CTGAAATATATA
* *
69930105 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAACACTAAGTGTGCGAGCTG-AAATATATA
69930164 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69930178 GATTCACTAT
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 40 0.63
59 21 0.33
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAACACTAAGTGTGCGAGCTGAAATATATA
Found at i:69932854 original size:27 final size:27
Alignment explanation
Indices: 69932816--69933022 Score: 216
Period size: 27 Copynumber: 7.8 Consensus size: 27
69932806 TAAGACCTCG
69932816 GTTTGTAAAATTACCGAAATACTCCCA
1 GTTTGTAAAATTACCGAAATACTCCCA
* *
69932843 GTTTGTAAAATTACTGAAATAC-CCAA
1 GTTTGTAAAATTACCGAAATACTCCCA
*
69932869 GTTTGT-AAATTACCTAAATA-TCCCCTA
1 GTTTGTAAAATTACCGAAATACT-CCC-A
69932896 -TTTGTAAAATTACCGAAATACTCCCA
1 GTTTGTAAAATTACCGAAATACTCCCA
* *
69932922 GTTTGT-AAATTACCAAAATACCCCCA
1 GTTTGTAAAATTACCGAAATACTCCCA
**
69932948 GTTTGTAAAATTACTAAAATAC-CCCTA
1 GTTTGTAAAATTACCGAAATACTCCC-A
** *
69932975 GTTTGTAAAATTACTAAAATA-TCCTTTA
1 GTTTGTAAAATTACCGAAATACTCC--CA
69933003 G-TT-TAAAATTACCGAAATAC
1 GTTTGTAAAATTACCGAAATAC
69933023 CCTTGTAGGG
Statistics
Matches: 156, Mismatches: 12, Indels: 24
0.81 0.06 0.12
Matches are distributed among these distances:
25 12 0.08
26 58 0.37
27 83 0.53
28 3 0.02
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
GTTTGTAAAATTACCGAAATACTCCCA
Found at i:69932927 original size:53 final size:53
Alignment explanation
Indices: 69932816--69933024 Score: 234
Period size: 53 Copynumber: 4.0 Consensus size: 53
69932806 TAAGACCTCG
* * *
69932816 GTTTGTAAAATTACCGAAATACTCCC-AGTTTGTAAAATTACTGAAATACCCAA
1 GTTTGTAAAATTACCTAAATAC-CCCTAGTTTGTAAAATTACCGAAATACCCCA
69932869 GTTTGT-AAATTACCTAAATATCCCCTA-TTTGTAAAATTACCGAAATACTCCCA
1 GTTTGTAAAATTACCTAAATA-CCCCTAGTTTGTAAAATTACCGAAATAC-CCCA
* * **
69932922 GTTTGT-AAATTACCAAAATACCCCCAGTTTGTAAAATTACTAAAATACCCCTA
1 GTTTGTAAAATTACCTAAATACCCCTAGTTTGTAAAATTACCGAAATACCCC-A
**
69932975 GTTTGTAAAATTA-CTAAAATATCCTTTAG-TT-TAAAATTACCGAAATACCC
1 GTTTGTAAAATTACCT-AAATA-CCCCTAGTTTGTAAAATTACCGAAATACCC
69933025 TTGTAGGGTA
Statistics
Matches: 135, Mismatches: 13, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
52 44 0.33
53 74 0.55
54 13 0.10
55 4 0.03
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (53 bp):
GTTTGTAAAATTACCTAAATACCCCTAGTTTGTAAAATTACCGAAATACCCCA
Found at i:69932951 original size:79 final size:80
Alignment explanation
Indices: 69932816--69932988 Score: 264
Period size: 79 Copynumber: 2.2 Consensus size: 80
69932806 TAAGACCTCG
**
69932816 GTTTGTAAAATTACCGAAATACTCCCAGTTTGTAAAATTACTGAAATACCCAAGTTTGT-AAATT
1 GTTTGTAAAATTACCGAAATACTCCCAGTTTGTAAAATTACCAAAATACCCAAGTTTGTAAAATT
69932880 ACCT-AAATATCCCCTA
66 A-CTAAAATA-CCCCTA
*
69932896 -TTTGTAAAATTACCGAAATACTCCCAGTTTGT-AAATTACCAAAATACCCCCAGTTTGTAAAAT
1 GTTTGTAAAATTACCGAAATACTCCCAGTTTGTAAAATTACCAAAATA-CCCAAGTTTGTAAAAT
69932959 TACTAAAATACCCCTA
65 TACTAAAATACCCCTA
69932975 GTTTGTAAAATTAC
1 GTTTGTAAAATTAC
69932989 TAAAATATCC
Statistics
Matches: 86, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
78 12 0.14
79 50 0.58
80 24 0.28
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.32
Consensus pattern (80 bp):
GTTTGTAAAATTACCGAAATACTCCCAGTTTGTAAAATTACCAAAATACCCAAGTTTGTAAAATT
ACTAAAATACCCCTA
Found at i:69935843 original size:3 final size:3
Alignment explanation
Indices: 69935830--69935863 Score: 50
Period size: 3 Copynumber: 10.7 Consensus size: 3
69935820 TCATACGGGT
69935830 TAA TAAA TAA TAA TAA TAA TAA TAA TATA TAA TA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TA-A TAA TA
69935864 TAAAAAATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 23 0.79
4 6 0.21
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:69943853 original size:28 final size:29
Alignment explanation
Indices: 69943821--69943919 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
69943811 ATAATAAGCC
*
69943821 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
69943849 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
69943877 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
69943906 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69943920 CAATTCATGA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:69946481 original size:141 final size:141
Alignment explanation
Indices: 69946305--69946784 Score: 762
Period size: 141 Copynumber: 3.4 Consensus size: 141
69946295 TTAGGATTTT
* ** * * * *
69946305 ATGTGATGGATGTGAATGTGTATACATGAGCTAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * ** * * * * *
69946370 TGCATTTGTGTGCTAAGGCCGAATGGAAAATGTGATGAATTTGAACATGCATTTGTGTGCTAAGG
66 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGTGATAAGG
*
69946435 CCGAATGGTCA
131 CCGAATGGCCA
* *
69946446 ATGTGATGAATGTGAACATGTTTATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
69946511 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGTGATAAGG
66 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGTGATAAGG
69946576 CCGAATGGCCA
131 CCGAATGGCCA
69946587 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
69946652 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGTGATAAGG
66 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGTGATAAGG
69946717 CCGAATGGCCA
131 CCGAATGGCCA
* * *
69946728 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
69946785 CGTGGATGTG
Statistics
Matches: 315, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
141 315 1.00
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (141 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATGTGTGATAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGTGATAAGG
CCGAATGGCCA
Found at i:69946592 original size:22 final size:22
Alignment explanation
Indices: 69946565--69946640 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
69946555 ACATGCATAT
69946565 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
69946587 ATGTGATGAATG-TGAACATGTATA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
69946611 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
69946634 ATGTGAT
1 ATGTGAT
69946641 GAATGTGAAC
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:69946781 original size:22 final size:22
Alignment explanation
Indices: 69946706--69946781 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
69946696 ACATGCATAT
*
69946706 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
69946728 ATGTGATAAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
69946752 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
69946775 ATGTGAT
1 ATGTGAT
69946782 GAACGTGGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:69946801 original size:47 final size:47
Alignment explanation
Indices: 69946336--69946784 Score: 691
Period size: 47 Copynumber: 9.6 Consensus size: 47
69946326 ATACATGAGC
* * * *
69946336 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
** * * * *
69946383 TAAGGCCGAATGGAAAATGTGATGAATTTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* **
69946430 TAAGGCCGAATGGTCAATGTGATGAATGTGAACATGTTTATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* *
69946477 TAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* *
69946524 TAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
69946571 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
69946618 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* *
69946665 TAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
69946712 TAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
69946759 TAAGGCAGAATGGCCAATGTGATGAA
1 TAAGGCCGAATGGCCAATGTGATGAA
69946785 CGTGGATGTG
Statistics
Matches: 372, Mismatches: 30, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 372 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
Found at i:69948589 original size:15 final size:15
Alignment explanation
Indices: 69948555--69948614 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
69948545 TATAGATAAC
* * *
69948555 AAGAAAACCAGGATT
1 AAGAAATCCAAGATA
*
69948570 AAGAAGTCCAAGATA
1 AAGAAATCCAAGATA
*
69948585 GAGAAATCCAAGATA
1 AAGAAATCCAAGATA
*
69948600 AAAAAATCCAAGATA
1 AAGAAATCCAAGATA
69948615 CAATATCATA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.57, C:0.13, G:0.17, T:0.13
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:69948590 original size:30 final size:30
Alignment explanation
Indices: 69948556--69948614 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
69948546 ATAGATAACA
* * * *
69948556 AGAAAACCAGGATTAAGAAGTCCAAGATAG
1 AGAAAACCAAGATAAAAAAATCCAAGATAG
*
69948586 AGAAATCCAAGATAAAAAAATCCAAGATA
1 AGAAAACCAAGATAAAAAAATCCAAGATA
69948615 CAATATCATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.14
Consensus pattern (30 bp):
AGAAAACCAAGATAAAAAAATCCAAGATAG
Found at i:69953563 original size:30 final size:29
Alignment explanation
Indices: 69953528--69953601 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
69953518 GTTCGAGCTC
* *
69953528 GCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACCCAGTGCCATA-TATTTCCAGCAT
**
69953558 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
69953587 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
69953602 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 26 0.65
30 14 0.35
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.28
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:69954798 original size:19 final size:18
Alignment explanation
Indices: 69954762--69954819 Score: 57
Period size: 20 Copynumber: 3.2 Consensus size: 18
69954752 AGAATGAACA
*
69954762 CTTT-TTTTT-TTCTTTT
1 CTTTGTTTTTCTTCATTT
69954778 CTTTGTTTTTCTTCATATT
1 CTTTGTTTTTCTTCAT-TT
* *
69954797 CTCTTTTTTTTTTTCATTT
1 CT-TTGTTTTTCTTCATTT
69954816 CTTT
1 CTTT
69954820 ATTCTTCCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
16 4 0.11
17 5 0.14
18 6 0.17
19 8 0.23
20 12 0.34
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.78
Consensus pattern (18 bp):
CTTTGTTTTTCTTCATTT
Found at i:69955879 original size:40 final size:40
Alignment explanation
Indices: 69955778--69955959 Score: 220
Period size: 40 Copynumber: 4.5 Consensus size: 40
69955768 TATTCGAATG
* * *
69955778 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGAT-AGTGACT
* * * *
69955819 ATATCCGGACTAAGATCCGAAGGCATTTGTGAGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGATAGTGACT
* * * *
69955859 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGATAGTGACT
* * * *
69955899 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGATAGTGACT
69955939 ATATCCGGGCTAAGACCCGAA
1 ATATCCGGGCTAAGACCCGAA
69955960 TGCCTTGTGC
Statistics
Matches: 119, Mismatches: 22, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 92 0.77
41 27 0.23
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGATAGTGACT
Found at i:69955925 original size:80 final size:79
Alignment explanation
Indices: 69955778--69955998 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 79
69955768 TATTCGAATG
* *
69955778 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCT-AGTGACTATATCCGGGCTAAG-TCCCGAAGG
* * *
69955842 CATTTGTGAGAGTTACT
63 CATTTATGAGAGTGACC
* * *
69955859 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
**
69955924 TTTATGCTAGTGACC
65 TTTATGAGAGTGACC
* * * ** *
69955939 ATATCCGGGCTAAGACCCGAATGCCTTGTGCGAGTGGTTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAG
69955999 ATACTTGGGT
Statistics
Matches: 119, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
78 14 0.12
79 17 0.14
80 59 0.50
81 29 0.24
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCAT
TTATGAGAGTGACC
Found at i:69958417 original size:29 final size:29
Alignment explanation
Indices: 69958384--69958439 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
69958374 TCTATGAGTG
* *
69958384 TAGGGGTAAAAGTGTAATTTTTGAAAAGT
1 TAGGGGTAAAAGTGTAAATTTTCAAAAGT
*
69958413 TAGGGGTAAAATTGTAAATTTTCAAAA
1 TAGGGGTAAAAGTGTAAATTTTCAAAA
69958440 ATTTGATATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.41, C:0.02, G:0.23, T:0.34
Consensus pattern (29 bp):
TAGGGGTAAAAGTGTAAATTTTCAAAAGT
Found at i:69958934 original size:23 final size:23
Alignment explanation
Indices: 69958898--69959141 Score: 271
Period size: 23 Copynumber: 10.6 Consensus size: 23
69958888 GAATCTATAA
* *
69958898 GCTACAATATAGTGGTAGCTTTG
1 GCTACAATACAGTGGTAGCTTCG
* *
69958921 GCTAC-ATCTCAGTGGTAGTTTCG
1 GCTACAAT-ACAGTGGTAGCTTCG
*
69958944 GCTACAATACAGTGGTAGCTTCA
1 GCTACAATACAGTGGTAGCTTCG
* *
69958967 GCTACAATATAGTGGTAGCTTCA
1 GCTACAATACAGTGGTAGCTTCG
69958990 GCTAC-AT-CTTAGTGGTAGCTTCG
1 GCTACAATAC--AGTGGTAGCTTCG
69959013 GCTACAATACAGTGGTAGCTTCG
1 GCTACAATACAGTGGTAGCTTCG
* *
69959036 GCTAC-ATCTCAGTGGTAGCTTCA
1 GCTACAAT-ACAGTGGTAGCTTCG
*
69959059 GCTACAATACAGTGGTAGCTTTG
1 GCTACAATACAGTGGTAGCTTCG
*
69959082 GCTACAATACAGTGGTAGCTTCA
1 GCTACAATACAGTGGTAGCTTCG
** * *
69959105 GCTACGTTACAATGATAGCTTCG
1 GCTACAATACAGTGGTAGCTTCG
* *
69959128 GCTATATTACAGTG
1 GCTACAATACAGTG
69959142 TGGCACTTTG
Statistics
Matches: 188, Mismatches: 25, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
22 6 0.03
23 175 0.93
24 6 0.03
25 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (23 bp):
GCTACAATACAGTGGTAGCTTCG
Found at i:69959013 original size:69 final size:68
Alignment explanation
Indices: 69958897--69959109 Score: 313
Period size: 69 Copynumber: 3.1 Consensus size: 68
69958887 GGAATCTATA
** *
69958897 AGCTACAATATAGTGGTAGCTTTGGCTACATCTCAGTGGTAGTTTCGGCTACAATACAGTGGTAG
1 AGCTACAATATAGTGGTAGCTTCAGCTACATCT-AGTGGTAGCTTCGGCTACAATACAGTGGTAG
69958962 CTTC
65 CTTC
69958966 AGCTACAATATAGTGGTAGCTTCAGCTACATCTTAGTGGTAGCTTCGGCTACAATACAGTGGTAG
1 AGCTACAATATAGTGGTAGCTTCAGCTACATC-TAGTGGTAGCTTCGGCTACAATACAGTGGTAG
69959031 CTTC
65 CTTC
* * *
69959035 GGCTAC-ATCTCAGTGGTAGCTTCAGCTACAATAC-AGTGGTAGCTTTGGCTACAATACAGTGGT
1 AGCTACAATAT-AGTGGTAGCTTCAGCTAC-AT-CTAGTGGTAGCTTCGGCTACAATACAGTGGT
69959098 AGCTTC
63 AGCTTC
69959104 AGCTAC
1 AGCTAC
69959110 GTTACAATGA
Statistics
Matches: 133, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
68 3 0.02
69 126 0.95
70 3 0.02
71 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (68 bp):
AGCTACAATATAGTGGTAGCTTCAGCTACATCTAGTGGTAGCTTCGGCTACAATACAGTGGTAGC
TTC
Found at i:69966235 original size:27 final size:28
Alignment explanation
Indices: 69966179--69966248 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
69966169 AAATTTGTAC
69966179 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
69966207 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
69966234 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
69966249 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:69966259 original size:27 final size:27
Alignment explanation
Indices: 69966179--69966260 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
69966169 AAATTTGTAC
* *
69966179 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
69966207 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
69966234 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
69966261 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:69974516 original size:37 final size:36
Alignment explanation
Indices: 69974466--69974569 Score: 122
Period size: 37 Copynumber: 2.8 Consensus size: 36
69974456 CTGGAAATTA
* *
69974466 TATCCGGGTTAAGACCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCGAAGGCAATTGTGCGAGAT--C
*
69974503 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATT
1 TATCCGGGCTAAGA-CCGAAGGCAATT-GTGCGAGATC
*
69974540 TATCCGGGCTAAGACCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCGAAGGCAATTGTGC
69974570 ACGTGATTAT
Statistics
Matches: 59, Mismatches: 4, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
36 12 0.20
37 32 0.54
38 14 0.24
39 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (36 bp):
TATCCGGGCTAAGACCGAAGGCAATTGTGCGAGATC
Found at i:69984966 original size:49 final size:49
Alignment explanation
Indices: 69984807--69984982 Score: 210
Period size: 51 Copynumber: 3.5 Consensus size: 49
69984797 CTGGTATGCA
** **
69984807 TAGTAGCCTGCACTTAGTACTACACACT-TGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACA-TGTGACC-AATTATCCGATACACG
* * * * * *
69984857 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAATTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCGATACACG
*
69984908 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGATACACG
69984957 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
69984983 AGTCACCTCA
Statistics
Matches: 107, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
49 36 0.34
50 34 0.32
51 37 0.35
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGATACACG
Found at i:69984978 original size:100 final size:101
Alignment explanation
Indices: 69984794--69984982 Score: 292
Period size: 101 Copynumber: 1.9 Consensus size: 101
69984784 TAGACAAGGC
* * * *
69984794 TATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACACTTGACCTAACCATCTAATACACGTA
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACTCGACCTAACCATCCAATACACGTA
69984859 GTAGCCTGCACTTAGTACTACACACGTGATCGAATT
66 GTAGCCTGCACTTAGTACTACACACGTGATCGAATT
** *
69984895 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA-TGCGACC-AATTATCCGATACACGT
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACT-CGACCTAACCATCCAATACACGT
69984958 AGTAGCCTGCACTTAGTACTACACA
65 AGTAGCCTGCACTTAGTACTACACA
69984983 AGTCACCTCA
Statistics
Matches: 80, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
100 39 0.49
101 41 0.51
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (101 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACTCGACCTAACCATCCAATACACGTA
GTAGCCTGCACTTAGTACTACACACGTGATCGAATT
Found at i:69985276 original size:27 final size:27
Alignment explanation
Indices: 69985236--69985289 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
69985226 TCATACAACC
* *
69985236 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
69985263 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
69985290 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:69987591 original size:48 final size:48
Alignment explanation
Indices: 69987511--69987843 Score: 278
Period size: 48 Copynumber: 6.9 Consensus size: 48
69987501 AGGGTGAATT
* * * *
69987511 GCTGATGCCATGTTCCAAACATGGT-TATACACTGGCTCACTTGTCGAG
1 GCTGATGCCATGTCCCAGACATGGTCT-TACACTGGCTCACATATCGAG
* * * * * *
69987559 GCCGATGCCATGTCCCAGACATGGTCTGACACTAGCTCTCATCTC-ATT
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGA-G
* * * * * * *
69987607 GCTGATTCTATGTCCTAGACATGGTCTTACACCGGCTCTCGTAAT-GTG
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATCGAG
* * * * * *
69987655 GCTAATGCCATGTCCCAGACATGGTCTCACACTAGCGCACATATCAAT
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAG
* * * *
69987703 GCTGATGCCATGTCCTAGACATGGTCGTACACTGGCTCTCATATCGTG
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAG
* * * * *
69987751 GCTAATGTCATGTCGCAGACATGGTCTTACACTGGCACACATAAT-GTG
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATCGAG
* * * *
69987799 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCACACATATC
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATC
69987844 ACCCAACTGT
Statistics
Matches: 222, Mismatches: 56, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
47 5 0.02
48 213 0.96
49 4 0.02
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (48 bp):
GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAG
Found at i:69987672 original size:96 final size:96
Alignment explanation
Indices: 69987510--69987824 Score: 316
Period size: 96 Copynumber: 3.3 Consensus size: 96
69987500 GAGGGTGAAT
* ** * * * * * **
69987510 TGCTGATGCCATGTTCC-AAACATGGTTATACACTGGCTCACTTGTCGAGGCCGATGCCATGTCC
1 TGCTGATGCCATG-TCCTAGACATGGTCGTACACCGGCTCTCATATCGTGGCTAATGCCATGTCC
* * * * *
69987574 CAGACATGGTCTGACACTAGCTCTCATCTCAT
65 CAGACATGGTCTCACACTAGCGCACATATCAA
* * * *
69987606 TGCTGATTCTATGTCCTAGACATGGTCTTACACCGGCTCTCGTAAT-GTGGCTAATGCCATGTCC
1 TGCTGATGCCATGTCCTAGACATGGTCGTACACCGGCTCTCAT-ATCGTGGCTAATGCCATGTCC
69987670 CAGACATGGTCTCACACTAGCGCACATATCAA
65 CAGACATGGTCTCACACTAGCGCACATATCAA
* * *
69987702 TGCTGATGCCATGTCCTAGACATGGTCGTACACTGGCTCTCATATCGTGGCTAATGTCATGTCGC
1 TGCTGATGCCATGTCCTAGACATGGTCGTACACCGGCTCTCATATCGTGGCTAATGCCATGTCCC
* *
69987767 AGACATGGTCTTACACT-G-GCACACAT-AA
66 AGACATGGTCTCACACTAGCGCACATATCAA
* *
69987795 TGTGGCCGATGCCATGTCCCAGACATGGTC
1 --T-GCTGATGCCATGTCCTAGACATGGTC
69987825 TTATACTAGC
Statistics
Matches: 185, Mismatches: 28, Indels: 12
0.82 0.12 0.05
Matches are distributed among these distances:
93 2 0.01
94 7 0.04
95 7 0.04
96 168 0.91
97 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.28
Consensus pattern (96 bp):
TGCTGATGCCATGTCCTAGACATGGTCGTACACCGGCTCTCATATCGTGGCTAATGCCATGTCCC
AGACATGGTCTCACACTAGCGCACATATCAA
Found at i:69987775 original size:144 final size:144
Alignment explanation
Indices: 69987562--69987844 Score: 383
Period size: 144 Copynumber: 2.0 Consensus size: 144
69987552 TGTCGAGGCC
* * *
69987562 GATGCCATGTCCCAGACATGGTCTGACACTAGCTCTCATCTCATTGCTGATTCTATGTCCTAGAC
1 GATGCCATGTCCCAGACATGGTCTGACACTAGCTCTCATATCATGGCTAATTCTATGTCCTAGAC
* * * * *
69987627 ATGGTCTTACACCGGCTCTCGTAATGTGGCTAATGCCATGTCCCAGACATGGTCTCACACTAGCG
66 ATGGTCTTACACCGGCACACATAATGTGGCCAATGCCATGTCCCAGACATGGTCTCACACTAGCA
69987692 CACATATCAATGCT
131 CACATATCAATGCT
* * *
69987706 GATGCCATGTCCTAGACATGGTC-GTACACTGGCTCTCATATCGTGGCTAATGTC-ATGTCGC-A
1 GATGCCATGTCCCAGACATGGTCTG-ACACTAGCTCTCATATCATGGCTAAT-TCTATGTC-CTA
* * * *
69987768 GACATGGTCTTACACTGGCACACATAATGTGGCCGATGCCATGTCCCAGACATGGTCTTATACTA
63 GACATGGTCTTACACCGGCACACATAATGTGGCCAATGCCATGTCCCAGACATGGTCTCACACTA
69987833 GCACACATATCA
128 GCACACATATCA
69987845 CCCAACTGTC
Statistics
Matches: 121, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
143 1 0.01
144 117 0.97
145 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (144 bp):
GATGCCATGTCCCAGACATGGTCTGACACTAGCTCTCATATCATGGCTAATTCTATGTCCTAGAC
ATGGTCTTACACCGGCACACATAATGTGGCCAATGCCATGTCCCAGACATGGTCTCACACTAGCA
CACATATCAATGCT
Found at i:69989082 original size:20 final size:20
Alignment explanation
Indices: 69989054--69989091 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
69989044 CTAGGAATTA
69989054 TGTGATCTAAGCTCATGAGT
1 TGTGATCTAAGCTCATGAGT
* *
69989074 TGTGCTCTAAGTTCATGA
1 TGTGATCTAAGCTCATGA
69989092 TTTCTATGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.37
Consensus pattern (20 bp):
TGTGATCTAAGCTCATGAGT
Found at i:69992214 original size:64 final size:64
Alignment explanation
Indices: 69992134--69992318 Score: 171
Period size: 67 Copynumber: 2.9 Consensus size: 64
69992124 AAGACATTAT
* * *
69992134 TATGTAGCTAGATCGCATTGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 TATGTAGCTAGGTCGCATTGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * *
69992198 TATGTAGCTAGGTCGCA-TGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTATGAG
1 TATGTAGCTAGGTCGCATTG-GTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAG
69992262 ATA
62 ATA
* * * * *
69992265 AAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 TATGTAGCTAGGTCGCATTGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
69992319 CGAACTATAT
Statistics
Matches: 97, Mismatches: 17, Indels: 15
0.75 0.13 0.12
Matches are distributed among these distances:
62 1 0.01
63 21 0.22
64 23 0.24
66 19 0.20
67 33 0.34
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATTGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:69993340 original size:15 final size:16
Alignment explanation
Indices: 69993322--69993351 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69993312 ATGGAAACTA
69993322 TGGTAT-ATGAAATAT
1 TGGTATAATGAAATAT
69993337 TGGTATAATGAAATA
1 TGGTATAATGAAATA
69993352 AACGATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (16 bp):
TGGTATAATGAAATAT
Found at i:69995116 original size:48 final size:48
Alignment explanation
Indices: 69995042--69995175 Score: 139
Period size: 48 Copynumber: 2.8 Consensus size: 48
69995032 ATACATTCTT
* * * *
69995042 TTGGCTTC-AGCCTATGATATCGGCACTTCGGGTGCGAGGTTCACA-GAT
1 TTGGCTTCGGGCC-ATGATATTGGCACTTAGGGTGCGAGGTT-ACATGAG
* * * *
69995090 TTGGCTTTGGGCCATGATATTAGCACTTTGGGTGCGA-GTTATATTGAG
1 TTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGAGGTTACA-TGAG
*
69995138 TTGGCTTCGGGCCATGATATTGGCACTTAGAGTGCGAG
1 TTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGAG
69995176 ACTCTTGAAT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
46 2 0.03
47 3 0.04
48 63 0.89
49 3 0.04
ACGTcount: A:0.19, C:0.18, G:0.31, T:0.32
Consensus pattern (48 bp):
TTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGAGGTTACATGAG
Found at i:70007699 original size:40 final size:40
Alignment explanation
Indices: 70007644--70007853 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
70007634 AACATTGGAA
70007644 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
70007684 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
70007724 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
70007764 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
70007803 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
70007844 CTATATCCGG
1 ATATATCCGG
70007854 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:70015834 original size:40 final size:40
Alignment explanation
Indices: 70015779--70015988 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
70015769 AACATTGGAA
70015779 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
70015819 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
70015859 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
70015899 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
70015938 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
70015979 CTATATCCGG
1 ATATATCCGG
70015989 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:70017925 original size:16 final size:16
Alignment explanation
Indices: 70017904--70017934 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70017894 CTGCAAAGGT
*
70017904 TGAAAAGCCAAAAAGC
1 TGAAAAGCAAAAAAGC
70017920 TGAAAAGCAAAAAAG
1 TGAAAAGCAAAAAAG
70017935 TGGGTTGTCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.13, G:0.19, T:0.06
Consensus pattern (16 bp):
TGAAAAGCAAAAAAGC
Found at i:70027014 original size:28 final size:27
Alignment explanation
Indices: 70026951--70027020 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
70026941 ATAGTGAGTC
*
70026951 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
70026978 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
70027006 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70027021 GTACAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:70036509 original size:46 final size:46
Alignment explanation
Indices: 70036459--70036631 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 46
70036449 TGGTTGAGCA
*
70036459 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
** * * * * * * *
70036505 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGAAATGTA-ACTAGGTA
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACT--TATGGATGCGA-ATG
*
70036552 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATG-GAAACG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCG-AATG
* * * *
70036598 CCCGAGCTCATTGAGTTGAGTTCAAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTA
70036632 GGGGCGGATT
Statistics
Matches: 99, Mismatches: 22, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
45 1 0.01
46 64 0.65
47 33 0.33
48 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
Found at i:70036626 original size:93 final size:93
Alignment explanation
Indices: 70036458--70036626 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
70036448 ATGGTTGAGC
* * * *
70036458 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGTTG
*
70036523 AGTCTGAGTTCGTGAAATGTAACTAGGT
66 AGTCTAAGTTCGTGAAATGTAACTAGGT
*
70036551 ATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATG-GAAACGCCCGAGCTCATTGAGTT
1 ATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCG-AACGCCCGAACTCATTGAGTT
70036615 GAGT-TCAAGTTC
65 GAGTCT-AAGTTC
70036627 ACTTAGGGGC
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
92 2 0.03
93 66 0.97
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGTTG
AGTCTAAGTTCGTGAAATGTAACTAGGT
Found at i:70045566 original size:50 final size:50
Alignment explanation
Indices: 70045491--70045618 Score: 168
Period size: 50 Copynumber: 2.6 Consensus size: 50
70045481 TTGGTACGCA
* *
70045491 TAGTAGCCTACACTTAGTACTACACATGCAACCTAACAATCTAG-TACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAATC-AGATACACG
* ** * *
70045541 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCGGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAATCAGATACACG
*
70045591 TAGTAGCCTGCACTTAATACTACACATG
1 TAGTAGCCTGCACTTAGTACTACACATG
70045619 TGTTCTCACA
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
49 1 0.01
50 67 0.99
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAATCAGATACACG
Found at i:70049141 original size:25 final size:25
Alignment explanation
Indices: 70049112--70049159 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
70049102 TTATACCATG
* * *
70049112 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
70049137 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
70049160 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:70049228 original size:20 final size:20
Alignment explanation
Indices: 70049203--70049261 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
70049193 TAAATATGGT
70049203 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
70049223 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
70049243 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
70049262 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:70049243 original size:11 final size:11
Alignment explanation
Indices: 70049207--70049261 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
70049197 TATGGTATGT
70049207 ATGATATGCAC
1 ATGATATGCAC
* *
70049218 ATGAAATG--T
1 ATGATATGCAC
70049227 ATGATATGCAC
1 ATGATATGCAC
*
70049238 ATGATATG--T
1 ATGATATGCAC
70049247 ATGATATGCAC
1 ATGATATGCAC
70049258 ATGA
1 ATGA
70049262 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:70049338 original size:24 final size:24
Alignment explanation
Indices: 70049311--70049453 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
70049301 GGAGGAAGTG
70049311 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
70049335 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
70049359 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
70049382 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
70049406 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
70049430 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
70049454 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:70049404 original size:47 final size:47
Alignment explanation
Indices: 70049311--70049453 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
70049301 GGAGGAAGTG
70049311 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
70049359 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
70049406 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
70049454 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:70049427 original size:71 final size:72
Alignment explanation
Indices: 70049311--70049454 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
70049301 GGAGGAAGTG
*
70049311 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
70049374 CCAGTTAT
65 CCAGTTAT
** * *
70049382 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
70049447 CAGTTAT
66 CAGTTAT
70049454 A
1 A
70049455 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:70049712 original size:31 final size:31
Alignment explanation
Indices: 70049645--70049738 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
70049635 CGTTTACAGT
70049645 AAAGGCTTCGGCCCAGTAATATGAAATAT-A
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
70049675 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
70049706 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
70049737 AA
1 AA
70049739 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
30 29 0.47
31 33 0.53
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:70057369 original size:20 final size:20
Alignment explanation
Indices: 70057344--70057402 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
70057334 TAAATATGGT
70057344 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
70057364 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
70057384 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
70057403 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:70057384 original size:11 final size:11
Alignment explanation
Indices: 70057348--70057402 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
70057338 TATGGTATGT
70057348 ATGATATGCAC
1 ATGATATGCAC
* *
70057359 ATGAAATG--T
1 ATGATATGCAC
70057368 ATGATATGCAC
1 ATGATATGCAC
*
70057379 ATGATATG--T
1 ATGATATGCAC
70057388 ATGATATGCAC
1 ATGATATGCAC
70057399 ATGA
1 ATGA
70057403 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:70057509 original size:24 final size:24
Alignment explanation
Indices: 70057453--70057618 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
70057443 GAGGAAGTGA
70057453 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
70057477 -AAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
70057500 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
70057524 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
70057547 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * * *
70057571 GAAACGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
70057595 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
70057619 ATGATAAAGC
Statistics
Matches: 131, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
23 46 0.35
24 74 0.56
25 11 0.08
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:70057522 original size:47 final size:46
Alignment explanation
Indices: 70057453--70057618 Score: 235
Period size: 47 Copynumber: 3.5 Consensus size: 46
70057443 GAGGAAGTGA
70057453 AAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTAT
70057499 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATC-AAAGGGCTTATGCCCCAGTTAT
* * *
70057547 AAAAGGGCTTATGCCCCAGTTATTGAAACGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-TCAAAGGGCTTATGCCCCAGTTA-T
*
70057595 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
70057619 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 4, Indels: 9
0.89 0.03 0.07
Matches are distributed among these distances:
47 65 0.59
48 35 0.32
49 10 0.09
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTAT
Found at i:70057569 original size:71 final size:71
Alignment explanation
Indices: 70057453--70057619 Score: 246
Period size: 71 Copynumber: 2.3 Consensus size: 71
70057443 GAGGAAGTGA
* *
70057453 AAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAACGGCTTATGCCCCA
70057518 GTTATC
66 GTTATC
** *
70057524 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAACGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAACGGCTTATGCCCCA
*
70057589 GTTATT
66 GTTATC
*
70057595 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
70057620 TGATAAAGCA
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 75 0.86
72 12 0.14
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAACGGCTTATGCCCCA
GTTATC
Found at i:70057877 original size:31 final size:31
Alignment explanation
Indices: 70057810--70057903 Score: 163
Period size: 31 Copynumber: 3.1 Consensus size: 31
70057800 CGTTTACAGT
70057810 AAAGGCTTCGGCCCAGTAATATGAAATAT-A
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
70057840 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
70057871 AAAGGCTTCGACCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
70057902 AA
1 AA
70057904 TATGAAAAGG
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
30 29 0.48
31 32 0.52
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:70075852 original size:2 final size:2
Alignment explanation
Indices: 70075845--70075871 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
70075835 AACCAATCCT
70075845 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
70075872 TTAAAAATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:70079945 original size:15 final size:15
Alignment explanation
Indices: 70079922--70079960 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
70079912 GATTAAGACG
*
70079922 TCCAAGATAGAGAAA
1 TCCAAGATAAAGAAA
*
70079937 TCCATGATAAAGAAA
1 TCCAAGATAAAGAAA
70079952 TCCAAGATA
1 TCCAAGATA
70079961 CAATATCATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.51, C:0.15, G:0.15, T:0.18
Consensus pattern (15 bp):
TCCAAGATAAAGAAA
Found at i:70081504 original size:40 final size:40
Alignment explanation
Indices: 70081459--70081625 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
70081449 CGGAATATAA
70081459 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
70081499 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
70081539 CCGGACATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
70081579 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
70081618 CCGGATAT
1 CCGGATAT
70081626 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70082074 original size:61 final size:60
Alignment explanation
Indices: 70082004--70082127 Score: 155
Period size: 61 Copynumber: 2.0 Consensus size: 60
70081994 TCCTCCCCCT
70082004 TTTCCTTAGTA-ATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTTTT-TTCTTTTC
1 TTTCCTTAGTACA-TTCGGCCAAGAAGATGGAG-AAGGATGAAC--ATTTTTTTTCTTCTTTTC
*** *
70082065 TTTCCTTAGTACATTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTCTTTTTTTC
1 TTTCCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTTTTCTTCTTTTC
70082125 TTT
1 TTT
70082128 TTCATATTCT
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
59 9 0.16
60 10 0.18
61 33 0.59
62 4 0.07
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.44
Consensus pattern (60 bp):
TTTCCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTTTTCTTCTTTTC
Found at i:70089277 original size:61 final size:60
Alignment explanation
Indices: 70089207--70089330 Score: 146
Period size: 61 Copynumber: 2.0 Consensus size: 60
70089197 CCTCCCCCTT
*
70089207 TTTCCTTAGTA-ATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTTTT-TTCTTTTC
1 TTTCCTTAGTACA-TTCGGCAAAGAAGATGGAG-AAGGATGAAC--ATTTTTTTTCTTCTTTTC
*** *
70089268 TTTCCTTAGTACATTCGGCAAAGCCTATGGAGAAGGATGAACATTTTTTTTCTTTTTTTC
1 TTTCCTTAGTACATTCGGCAAAGAAGATGGAGAAGGATGAACATTTTTTTTCTTCTTTTC
70089328 TTT
1 TTT
70089331 TTCATATTCT
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
59 9 0.16
60 10 0.18
61 32 0.58
62 4 0.07
ACGTcount: A:0.26, C:0.15, G:0.16, T:0.44
Consensus pattern (60 bp):
TTTCCTTAGTACATTCGGCAAAGAAGATGGAGAAGGATGAACATTTTTTTTCTTCTTTTC
Found at i:70092884 original size:17 final size:19
Alignment explanation
Indices: 70092862--70092896 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
70092852 CTCCTTCCTT
70092862 TTCTTCTT-TT-ATTCATC
1 TTCTTCTTATTAATTCATC
70092879 TTCTTCTTATTAATTCAT
1 TTCTTCTTATTAATTCAT
70092897 TTTATTTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 2 0.12
19 6 0.38
ACGTcount: A:0.17, C:0.20, G:0.00, T:0.63
Consensus pattern (19 bp):
TTCTTCTTATTAATTCATC
Found at i:70099176 original size:24 final size:24
Alignment explanation
Indices: 70099144--70099255 Score: 100
Period size: 24 Copynumber: 4.6 Consensus size: 24
70099134 TCTCACTCAT
*
70099144 TCGCACACATAGTGCCACGT-TTCC
1 TCGCACACATAGTGCCACGTAAT-C
* *
70099168 TCGCACACATAGTGCTATGTAATC
1 TCGCACACATAGTGCCACGTAATC
* * *
70099192 TCGTACACATAGTGCCACGTAGTTT
1 TCGCACACATAGTGCCACGTA-ATC
* * * *
70099217 TTGCACACATAGTGCCGCATAACC
1 TCGCACACATAGTGCCACGTAATC
*
70099241 TCGCACATATAGTGC
1 TCGCACACATAGTGC
70099256 TGAAATTTCT
Statistics
Matches: 69, Mismatches: 17, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
24 50 0.72
25 19 0.28
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (24 bp):
TCGCACACATAGTGCCACGTAATC
Found at i:70103888 original size:50 final size:50
Alignment explanation
Indices: 70103820--70103949 Score: 163
Period size: 50 Copynumber: 2.6 Consensus size: 50
70103810 CTGGTATGAA
*
70103820 TAGTAGCCTACACCTAGTACTACACATGTGACCTAACAATCTGG-TACACG
1 TAGTAGCCTACACTTAGTACTACACATGTGACCTAACAATC-GGATACACG
* * ** * * *
70103870 TAGTAGCTTGCACTTAGTACTACACACATGACTTAACCATCGGATAGACG
1 TAGTAGCCTACACTTAGTACTACACATGTGACCTAACAATCGGATACACG
*
70103920 TAGTAGCCTACACTTAGTACTACACGTGTG
1 TAGTAGCCTACACTTAGTACTACACATGTG
70103950 TTTTCACAGC
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
49 2 0.03
50 64 0.97
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACATGTGACCTAACAATCGGATACACG
Found at i:70110520 original size:43 final size:43
Alignment explanation
Indices: 70110364--70110519 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 43
70110354 CATCGATTAT
** * *
70110364 GAACTCAGACCACTCAACAAGCTTGGATGCTCACATCCATAAT
1 GAACTCAGACCACTCAACAAGCTTGGATGCTCACATATATCAC
* ** *
70110407 GAAATCAGACCACTCAATGAGCTCGGATGCT-ACATATATCAC
1 GAACTCAGACCACTCAACAAGCTTGGATGCTCACATATATCAC
* * *
70110449 AAACT-TGCACCACTCAACAAG-TTCGGATTCTCACATATATCAC
1 GAACTCAG-ACCACTCAACAAGCTT-GGATGCTCACATATATCAC
* *
70110492 GAACTCGGACCACTCAACGAGCTTGGAT
1 GAACTCAGACCACTCAACAAGCTTGGAT
70110520 TTCTTAATTC
Statistics
Matches: 90, Mismatches: 18, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
41 2 0.02
42 27 0.30
43 58 0.64
44 3 0.03
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (43 bp):
GAACTCAGACCACTCAACAAGCTTGGATGCTCACATATATCAC
Found at i:70113201 original size:28 final size:28
Alignment explanation
Indices: 70113156--70113224 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
70113146 CTTAAAACCC
*
70113156 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
*
70113183 TAGGGGTAATTTCGGTAATTTTTCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
70113211 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
70113225 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.19, C:0.10, G:0.26, T:0.45
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:70114876 original size:20 final size:20
Alignment explanation
Indices: 70114853--70114890 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70114843 CACATCCAAA
*
70114853 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
70114873 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
70114891 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:70119930 original size:40 final size:40
Alignment explanation
Indices: 70119875--70120098 Score: 281
Period size: 40 Copynumber: 5.5 Consensus size: 40
70119865 TATTCGGATG
70119875 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
70119915 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-CA--AGTTACT
* * *
70119958 ATA-CCTGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATATCC-GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
70119998 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
70120038 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
70120078 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
70120099 ATACTTGGGT
Statistics
Matches: 161, Mismatches: 18, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
39 13 0.08
40 110 0.68
41 3 0.02
42 2 0.01
43 33 0.20
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:70120020 original size:83 final size:80
Alignment explanation
Indices: 70119875--70120098 Score: 285
Period size: 83 Copynumber: 2.8 Consensus size: 80
70119865 TATTCGGATG
*
70119875 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
** *
70119940 TTTGTG-TGAGTAGTTGCT
66 TTCATGCT-AGT-G--ACT
* *
70119958 ATA-CCTGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC
1 ATATCC-GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGC
70120022 ATTCATGCTAGTGACT
65 ATTCATGCTAGTGACT
* * *
70120038 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
70120099 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
79 14 0.11
80 39 0.31
81 4 0.03
82 3 0.02
83 66 0.52
84 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTCATGCTAGTGACT
Found at i:70124061 original size:40 final size:39
Alignment explanation
Indices: 70124016--70124223 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
70124006 CGGAATACAA
*
70124016 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
70124056 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
70124096 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
70124136 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
70124176 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
70124216 CCGGATAT
1 CCGGATAT
70124224 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:70124156 original size:80 final size:80
Alignment explanation
Indices: 70124016--70124222 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
70124006 CGGAATACAA
* * *
70124016 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
70124080 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
70124096 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
70124160 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
70124176 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
70124223 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:70132100 original size:40 final size:39
Alignment explanation
Indices: 70132055--70132262 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
70132045 CGGAATACAA
*
70132055 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
70132095 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
70132135 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
70132175 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
70132215 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
70132255 CCGGATAT
1 CCGGATAT
70132263 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:70132195 original size:80 final size:80
Alignment explanation
Indices: 70132055--70132261 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
70132045 CGGAATACAA
* * *
70132055 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
70132119 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
70132135 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
70132199 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
70132215 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
70132262 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:70132777 original size:33 final size:33
Alignment explanation
Indices: 70132735--70132798 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
70132725 TCAAGAATAG
70132735 ATCATTAAGCTTGCCTCTAACCGAATGCATGGC
1 ATCATTAAGCTTGCCTCTAACCGAATGCATGGC
70132768 ATCATTAAGCTTGCCTCTAACCGAATGCATG
1 ATCATTAAGCTTGCCTCTAACCGAATGCATG
70132799 CACAATAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (33 bp):
ATCATTAAGCTTGCCTCTAACCGAATGCATGGC
Found at i:70134736 original size:15 final size:15
Alignment explanation
Indices: 70134716--70134744 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
70134706 GTTTGTGAAT
70134716 ATCCGGATGTTTTTG
1 ATCCGGATGTTTTTG
70134731 ATCCGGATGTTTTT
1 ATCCGGATGTTTTT
70134745 CCCGAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.24, T:0.48
Consensus pattern (15 bp):
ATCCGGATGTTTTTG
Found at i:70139555 original size:40 final size:40
Alignment explanation
Indices: 70139440--70139622 Score: 230
Period size: 40 Copynumber: 4.5 Consensus size: 40
70139430 TATTCGGATG
*
70139440 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGT-G--ACT
*
70139483 ATACCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
70139522 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
70139562 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
70139602 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
70139623 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
39 29 0.23
40 61 0.48
41 3 0.02
42 18 0.14
43 15 0.12
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:70141175 original size:42 final size:43
Alignment explanation
Indices: 70141054--70141179 Score: 125
Period size: 43 Copynumber: 2.9 Consensus size: 43
70141044 AATCAGAAAG
* *
70141054 AATATACAATGCC-GACGTCCCAAACGTGGTCTTACATGTAATCA
1 AATAT-CAATGCCAG-CGTCCCAAACGTGGTCTTACACGAAATCA
* * * *
70141098 AATATCAAT-ACAACTGTCCTATACAG-GGTCTTACACGAAATCA
1 AATATCAATGCCAGC-GTCCCAAAC-GTGGTCTTACACGAAATCA
*
70141141 AATAT-AATGCCAGCGTCCCAGACGTGGTCTTACACGAAA
1 AATATCAATGCCAGCGTCCCAAACGTGGTCTTACACGAAA
70141180 ACACATATTG
Statistics
Matches: 67, Mismatches: 10, Indels: 12
0.75 0.11 0.13
Matches are distributed among these distances:
41 1 0.01
42 26 0.39
43 34 0.51
44 6 0.09
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.24
Consensus pattern (43 bp):
AATATCAATGCCAGCGTCCCAAACGTGGTCTTACACGAAATCA
Found at i:70142254 original size:13 final size:13
Alignment explanation
Indices: 70142236--70142260 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70142226 ACAAGCGATT
70142236 AAATTTTCATACG
1 AAATTTTCATACG
70142249 AAATTTTCATAC
1 AAATTTTCATAC
70142261 ATGCTATTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (13 bp):
AAATTTTCATACG
Found at i:70148653 original size:42 final size:43
Alignment explanation
Indices: 70148552--70148664 Score: 174
Period size: 43 Copynumber: 2.7 Consensus size: 43
70148542 AGCATATACA
* *
70148552 ATGCCGATGTCCCAGACGTGGTCTTACATGCAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAAATATCG
* **
70148595 ATGCCATTGTCCCAGACAAGGTCTTACATGAAATCAAATAT-G
1 ATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAAATATCG
70148637 ATGCCAATGTCCCAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACGTGGTCTTACA
70148665 CAAATACACA
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
42 26 0.42
43 36 0.58
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAAATATCG
Found at i:70149779 original size:13 final size:13
Alignment explanation
Indices: 70149761--70149785 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70149751 ACAAGCGATT
70149761 AAATTTTCATACG
1 AAATTTTCATACG
70149774 AAATTTTCATAC
1 AAATTTTCATAC
70149786 ATGCTATTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (13 bp):
AAATTTTCATACG
Found at i:70151453 original size:15 final size:15
Alignment explanation
Indices: 70151433--70151462 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
70151423 AAAAACATTT
70151433 TTCATTAAGGGTTAA
1 TTCATTAAGGGTTAA
70151448 TTCATTAAGGGTTAA
1 TTCATTAAGGGTTAA
70151463 AGTGAATGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (15 bp):
TTCATTAAGGGTTAA
Found at i:70152308 original size:27 final size:28
Alignment explanation
Indices: 70152270--70152357 Score: 74
Period size: 27 Copynumber: 3.2 Consensus size: 28
70152260 GTGACAGATT
*
70152270 CACCAGATACAGATAAT-CGTAGTAGAGC
1 CACCAGA-ACAGATAATACGTAGCAGAGC
* * *
70152298 CACTAGAACAGA-AATATGTGGCAGAGC
1 CACCAGAACAGATAATACGTAGCAGAGC
* * * *
70152325 CACCAGATCAGATAAT-TGTGGCATAGC
1 CACCAGAACAGATAATACGTAGCAGAGC
70152352 CACCAG
1 CACCAG
70152358 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
26 3 0.06
27 39 0.76
28 9 0.18
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (28 bp):
CACCAGAACAGATAATACGTAGCAGAGC
Found at i:70155024 original size:48 final size:48
Alignment explanation
Indices: 70154960--70155615 Score: 1015
Period size: 48 Copynumber: 13.7 Consensus size: 48
70154950 TGAACATGCA
*
70154960 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
*
70155008 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* * * *
70155056 TATATGGGGTAAAGCCGAATGGCTAATGTAAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* *
70155104 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATCTGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* * *
70155152 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* *
70155200 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATCTGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* * *
70155248 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* *
70155296 TATATGTGGTAAAGCCGAATGGCCAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
*
70155344 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* * * * *
70155392 TATATGTGATAAAGCCGAATAGCTAATGTAAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* * *
70155440 TATATGTGGTAAAGCCGAATAGCCAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* * * *
70155488 TATATGTGATAAAGCCAAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
70155536 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* *
70155584 TATATGTGGTAAAGCTGAAAGGCTAATGTGAA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
70155616 TGTTGTAACA
Statistics
Matches: 553, Mismatches: 55, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 553 1.00
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
Found at i:70155710 original size:37 final size:37
Alignment explanation
Indices: 70155660--70155798 Score: 224
Period size: 37 Copynumber: 3.8 Consensus size: 37
70155650 GGAAATATAT
*
70155660 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
70155697 TCCGGGTAAGACCCGATGATTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
70155734 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
70155771 TCCAGGTAAGACCCGATAACTTCGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTG
70155799 AGGATTTCGT
Statistics
Matches: 95, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 95 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:70157094 original size:40 final size:40
Alignment explanation
Indices: 70157039--70157190 Score: 243
Period size: 40 Copynumber: 3.8 Consensus size: 40
70157029 GAGAATTGAG
* *
70157039 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
70157079 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
70157119 AGTGATGTATCCGGACTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
70157159 AGTGATGTATCCAGG-CTAGGTCCCGAAGAGCA
1 AGTGATGTATCC-GGACTAAGTCCCGAAGAGCA
70157191 ATCATGCTGG
Statistics
Matches: 106, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
40 104 0.98
41 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:70159695 original size:37 final size:37
Alignment explanation
Indices: 70159645--70159789 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
70159635 GGAAATATAT
*
70159645 TCCGGGTGAGACCCGATAACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
* *
70159682 TCCGGGTAAGACCCGATGATTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
* * *
70159719 TCCGGGTAAGACCCGATGACTACGTGTGGAAAGTATG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
*
70159756 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATT
70159790 TCGTCTGAGC
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
Found at i:70166557 original size:40 final size:40
Alignment explanation
Indices: 70166479--70166686 Score: 267
Period size: 40 Copynumber: 5.2 Consensus size: 40
70166469 TCTTCGGAAT
* ** * * *
70166479 TTAG-CCGGATATAACCACAAGCACAATTGCTTTTGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
70166518 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
70166558 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
70166598 TTAGCCCGGATATAACAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
70166638 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
70166678 TTAGCCCGG
1 TTAGCCCGG
70166687 GTATCATTCA
Statistics
Matches: 149, Mismatches: 18, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
39 3 0.02
40 145 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:70169108 original size:24 final size:24
Alignment explanation
Indices: 70169081--70169243 Score: 290
Period size: 24 Copynumber: 6.8 Consensus size: 24
70169071 CTTATTATGT
**
70169081 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
70169105 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
70169129 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
70169153 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
**
70169177 TCGCACACATAGTGCCATAGTGGA
1 TCGCACACATAGTGCCATAGTAAA
70169201 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
70169225 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
70169244 TATTTCCAGC
Statistics
Matches: 133, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 133 1.00
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:70170336 original size:22 final size:22
Alignment explanation
Indices: 70170311--70170352 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
70170301 TTTGTTTTCA
* *
70170311 TCATATCTTTTTTTTTTCAATT
1 TCATATCTTTATTCTTTCAATT
*
70170333 TCATTTCTTTATTCTTTCAA
1 TCATATCTTTATTCTTTCAA
70170353 GCATAATCCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.19, C:0.17, G:0.00, T:0.64
Consensus pattern (22 bp):
TCATATCTTTATTCTTTCAATT
Found at i:70176912 original size:24 final size:24
Alignment explanation
Indices: 70176885--70177047 Score: 290
Period size: 24 Copynumber: 6.8 Consensus size: 24
70176875 CTTATTATGT
**
70176885 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
70176909 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
70176933 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
70176957 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
**
70176981 TCGCACACATAGTGCCATAGTGGA
1 TCGCACACATAGTGCCATAGTAAA
70177005 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
70177029 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
70177048 TATTTCCAGC
Statistics
Matches: 133, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 133 1.00
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:70185512 original size:40 final size:40
Alignment explanation
Indices: 70185438--70185604 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
70185428 TCTTCGGAAT
* ** *
70185438 TTAG-CCGGATATAACCACAAGCACAATTG-CTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
70185476 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
70185516 TTAGCCCGGATATAACAACTCGC-CGAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AAATGCCTTCGGGTC
* * *
70185556 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
70185596 TTAGCCCGG
1 TTAGCCCGG
70185605 GTATCATTCA
Statistics
Matches: 111, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
38 3 0.03
39 20 0.18
40 87 0.78
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:70188929 original size:40 final size:40
Alignment explanation
Indices: 70188861--70188949 Score: 101
Period size: 40 Copynumber: 2.2 Consensus size: 40
70188851 TCAGTATCGT
*
70188861 ACACTTAGTGCCTCTTATAGTCGAAGCTATACCA-ACTCGC
1 ACACTTAGTGCCTCTTATAGCCGAAGCTATACCAGACT-GC
* * **
70188901 ACACTTAGTGCCAT-TTGTAGCCGGAGCTATTTCAGACTGC
1 ACACTTAGTGCC-TCTTATAGCCGAAGCTATACCAGACTGC
70188941 ACACTTAGT
1 ACACTTAGT
70188950 TCCGAACATA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
40 38 0.90
41 4 0.10
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (40 bp):
ACACTTAGTGCCTCTTATAGCCGAAGCTATACCAGACTGC
Found at i:70194780 original size:28 final size:29
Alignment explanation
Indices: 70194633--70194768 Score: 213
Period size: 29 Copynumber: 4.8 Consensus size: 29
70194623 GAAAGCATGA
70194633 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
70194662 ATATGAATGTGATTTGGGCCTAACGGGGC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
70194691 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
**
70194720 ATACAAATGT-ATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
70194748 ATATGAATGAGA-TTGGGCCTA
1 ATATGAATGTGATTTGGGCCTA
70194769 GCAGGCCATA
Statistics
Matches: 97, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
28 34 0.35
29 63 0.65
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:70202848 original size:27 final size:26
Alignment explanation
Indices: 70202797--70202858 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
70202787 TAGGGAAAAT
*
70202797 CAGTCATTTTACTTACAGAGTTATTA
1 CAGTCATTTTACTTACAGAGATATTA
* * *
70202823 CAGTCATTTTACCTTATAGCGATATTT
1 CAGTCATTTTA-CTTACAGAGATATTA
*
70202850 CGGTCATTT
1 CAGTCATTT
70202859 AACCCTATGG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 11 0.37
27 19 0.63
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.44
Consensus pattern (26 bp):
CAGTCATTTTACTTACAGAGATATTA
Found at i:70202910 original size:27 final size:27
Alignment explanation
Indices: 70202880--70202940 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
70202870 GGTATTTTGG
** * * *
70202880 TCATTTTATCTTATAAGTGCAAAATCA
1 TCATTTTATCACATAAGGGAAAAATAA
70202907 TCATTTTATCACATAAGGGAAAAATAA
1 TCATTTTATCACATAAGGGAAAAATAA
70202934 TCATTTT
1 TCATTTT
70202941 GTCTCACAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.39
Consensus pattern (27 bp):
TCATTTTATCACATAAGGGAAAAATAA
Found at i:70202951 original size:27 final size:27
Alignment explanation
Indices: 70202900--70202952 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
70202890 TTATAAGTGC
* *
70202900 AAAATCATCATTTTATCACATAAGGGA
1 AAAATAATCATTTTATCACACAAGGGA
* *
70202927 AAAATAATCATTTTGTCTCACAAGGG
1 AAAATAATCATTTTATCACACAAGGG
70202953 TTCAGGTACA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.30
Consensus pattern (27 bp):
AAAATAATCATTTTATCACACAAGGGA
Found at i:70206901 original size:18 final size:18
Alignment explanation
Indices: 70206880--70206916 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
70206870 GCGAAAAACT
70206880 TATTTTCATTGAAAACCC
1 TATTTTCATTGAAAACCC
**
70206898 TATTTTTGTTGAAAACCC
1 TATTTTCATTGAAAACCC
70206916 T
1 T
70206917 TCCTTGAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.19, G:0.08, T:0.43
Consensus pattern (18 bp):
TATTTTCATTGAAAACCC
Found at i:70208071 original size:29 final size:29
Alignment explanation
Indices: 70208010--70208105 Score: 95
Period size: 29 Copynumber: 3.3 Consensus size: 29
70208000 AAATCTGCAT
* * * *
70208010 ACATGCATATGGTCCACTAGGCCC-AATC
1 ACATTCATATGGACCATTAGACCCAAATC
* * * *
70208038 TCATTTATATGGCCCATTAGACCGAAATC
1 ACATTCATATGGACCATTAGACCCAAATC
* *
70208067 ACATTCATATGGACCATTAGGCCCAAACC
1 ACATTCATATGGACCATTAGACCCAAATC
70208096 ACATTCATAT
1 ACATTCATAT
70208106 TCATGCATTC
Statistics
Matches: 54, Mismatches: 13, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
28 17 0.31
29 37 0.69
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGACCATTAGACCCAAATC
Found at i:70208343 original size:16 final size:16
Alignment explanation
Indices: 70208322--70208358 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
70208312 AAACTTTTGT
*
70208322 CTTTTCGACATTTCGG
1 CTTTTCGACATTTCAG
70208338 CTTTTCGACATTTCAG
1 CTTTTCGACATTTCAG
70208354 CTTTT
1 CTTTT
70208359 GCCGATCTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.14, C:0.24, G:0.14, T:0.49
Consensus pattern (16 bp):
CTTTTCGACATTTCAG
Found at i:70217672 original size:19 final size:20
Alignment explanation
Indices: 70217633--70217672 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
70217623 TCCTTGCATC
*
70217633 ACACGCCCGTGCTCGCCACCA
1 ACACGCCCGTGC-CACCACCA
70217654 ACACGCCCGTG-CACCACCA
1 ACACGCCCGTGCCACCACCA
70217673 TACCGCAGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
21 11 0.61
ACGTcount: A:0.23, C:0.53, G:0.17, T:0.07
Consensus pattern (20 bp):
ACACGCCCGTGCCACCACCA
Found at i:70219159 original size:6 final size:6
Alignment explanation
Indices: 70219148--70219199 Score: 59
Period size: 6 Copynumber: 8.7 Consensus size: 6
70219138 TCCTCTTATC
* * * * *
70219148 TTTTTA TTTTTA TTTTTA TTCTTC TTTTTA TTTTTA ATTTCA TTTTAA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
70219196 TTTT
1 TTTT
70219200 ATTATTTTCT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:70219177 original size:18 final size:17
Alignment explanation
Indices: 70219149--70219212 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 17
70219139 CCTCTTATCT
*
70219149 TTTTATTTTTATTTTTA
1 TTTTCTTTTTATTTTTA
70219166 TTCTTCTTTTTATTTTTA
1 TT-TTCTTTTTATTTTTA
* *
70219184 ATTTCATTTTAATTTTATTA
1 TTTTC-TTTTTA-TTT-TTA
70219204 TTTTCTTTT
1 TTTTCTTTT
70219213 GAAAGACATA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
17 5 0.13
18 20 0.51
19 7 0.18
20 7 0.18
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTCTTTTTATTTTTA
Found at i:70219193 original size:17 final size:18
Alignment explanation
Indices: 70219155--70219200 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
70219145 ATCTTTTTAT
* *
70219155 TTTTATTTTTATTCTTCT
1 TTTTATTTTTAATCTTCA
70219173 TTTTATTTTTAAT-TTCA
1 TTTTATTTTTAATCTTCA
*
70219190 TTTTAATTTTA
1 TTTTATTTTTA
70219201 TTATTTTCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 13 0.52
18 12 0.48
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTATTTTTAATCTTCA
Found at i:70234171 original size:49 final size:48
Alignment explanation
Indices: 70234043--70234186 Score: 171
Period size: 49 Copynumber: 2.9 Consensus size: 48
70234033 TCTATTGTGA
* *
70234043 GGTCGCATGTTTAGTACTAAGTGCACGCTACTATGCGTACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CC--AAACTGT
* * * * * * *
70234094 GATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGACTGTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAAACTG-T
70234143 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAAA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAAA
70234187 TAGCTTCGGC
Statistics
Matches: 76, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
48 5 0.07
49 38 0.50
50 2 0.03
51 31 0.41
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (48 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAAACTGT
Found at i:70237966 original size:41 final size:41
Alignment explanation
Indices: 70237862--70237966 Score: 131
Period size: 40 Copynumber: 2.6 Consensus size: 41
70237852 TCGGGGTTTA
* * *
70237862 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAATGTCCT
1 AATCCGAGCTTGGTCTCGAAGGGCCTTCGAGCCAATGTCAT
* * * * *
70237903 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCCTTCGAGCCAATGTCAT
70237943 AATCCGAGCTTGGTCTCGAAGGGC
1 AATCCGAGCTTGGTCTCGAAGGGC
70237967 TTTTTGAGTC
Statistics
Matches: 51, Mismatches: 12, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
40 32 0.63
41 19 0.37
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCCTTCGAGCCAATGTCAT
Found at i:70240481 original size:15 final size:14
Alignment explanation
Indices: 70240461--70240531 Score: 61
Period size: 15 Copynumber: 4.8 Consensus size: 14
70240451 GTATCGTATC
70240461 TTGGGTTTCTTTATT
1 TTGGGTTT-TTTATT
*
70240476 TTGGGTTTTTCTATC
1 TTGGGTTTTT-TATT
*
70240491 TTGGATTTCTTTATT
1 TTGGGTTT-TTTATT
* *
70240506 CTGGGTTTTTCTATC
1 TTGGGTTTTT-TATT
*
70240521 TTGGATTTTTT
1 TTGGGTTTTTT
70240532 TATTCAGTTT
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
14 5 0.11
15 38 0.84
16 2 0.04
ACGTcount: A:0.08, C:0.10, G:0.18, T:0.63
Consensus pattern (14 bp):
TTGGGTTTTTTATT
Found at i:70240493 original size:30 final size:30
Alignment explanation
Indices: 70240457--70240536 Score: 133
Period size: 30 Copynumber: 2.7 Consensus size: 30
70240447 CATAGTATCG
* *
70240457 TATCTTGGGTTTCTTTATTTTGGGTTTTTC
1 TATCTTGGATTTCTTTATTCTGGGTTTTTC
70240487 TATCTTGGATTTCTTTATTCTGGGTTTTTC
1 TATCTTGGATTTCTTTATTCTGGGTTTTTC
*
70240517 TATCTTGGATTTTTTTATTC
1 TATCTTGGATTTCTTTATTC
70240537 AGTTTTCTTG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.10, C:0.11, G:0.16, T:0.62
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGGTTTTTC
Found at i:70242781 original size:50 final size:49
Alignment explanation
Indices: 70242659--70242843 Score: 196
Period size: 50 Copynumber: 3.7 Consensus size: 49
70242649 TGAGGTCGCA
* * * *
70242659 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACG
**
70242710 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * *
70242760 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGACTGTTGGTCGA-A
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTC-ACG
* *
70242809 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
70242844 ATAGCTTCGG
Statistics
Matches: 115, Mismatches: 14, Indels: 12
0.82 0.10 0.09
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 36 0.31
50 43 0.37
51 31 0.27
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:70247506 original size:40 final size:40
Alignment explanation
Indices: 70247461--70247628 Score: 140
Period size: 40 Copynumber: 4.2 Consensus size: 40
70247451 CGGAATATAA
* *
70247461 CCGGATATAACCA-TGTGCTCAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
70247501 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
70247541 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* *** * * * * *
70247581 CCGGATGTAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
70247621 CCGGATAT
1 CCGGATAT
70247629 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
40 101 0.99
41 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70254931 original size:50 final size:49
Alignment explanation
Indices: 70254806--70255336 Score: 358
Period size: 50 Copynumber: 10.8 Consensus size: 49
70254796 AAGTTATCTG
* * * ** *
70254806 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATAGTCTG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-T-TA
70254855 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATTAA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATT-A
*
70254905 ATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA--TCA-CAGTTTCGA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA--TT--A
* * * * *
70254955 GTACGCATAGTAGCCTGCACTTAGTACTACACA--TGCAAC-CAACAGTCTG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTG-ACCTCACCA-T-TA
*
70255004 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCGCCATCTA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCAT-TA
* * ***
70255054 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCTA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCA-CCAT-TA
* * * * * *
70255105 GTACGCATAGTAGCCTGCGCTTAGTACTACACATGCGACCTCA-CAATA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATTA
* * * *** * * *** *
70255153 G-ATCA-TTCGTA-TC-GTTTTTA-TACTACACACGTGATCACAGTTTTCGG
1 GTA-CACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATT--A
* * * * * *
70255200 GTACGCATAGTGGCCTGCACTTAGTACTACACA--TGCAAC-CAACAGTCTG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTG-ACCTCACCA-T-TA
* * *
70255249 GTACATGTAGTAGCCTACACTTAGTACTACACACGTGACCTCGCCATCTA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCAT-TA
70255299 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA
70255337 TCACAGTTTT
Statistics
Matches: 379, Mismatches: 73, Indels: 59
0.74 0.14 0.12
Matches are distributed among these distances:
44 15 0.04
45 5 0.01
46 1 0.00
47 9 0.02
48 13 0.03
49 104 0.27
50 166 0.44
51 66 0.17
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (49 bp):
GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATTA
Found at i:70255081 original size:149 final size:150
Alignment explanation
Indices: 70254806--70255140 Score: 584
Period size: 149 Copynumber: 2.2 Consensus size: 150
70254796 AAGTTATCTG
* * *
70254806 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAGTCTGGTACACGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAACAGTCTGGTACACGTAGTAGCCT
70254871 GCACTTAGTACTACACACGTGACCTCACCATTAAATACACGTAGTAGCCTGCACTTAGTACTACA
66 GCACTTAGTACTACACACGTGACCTCACCATTAAATACACGTAGTAGCCTGCACTTAGTACTACA
70254936 CACGTGATCACAG-TTTCGA
131 CACGTGATCACAGTTTTCGA
70254955 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAACAGTCTGGTACACGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAACAGTCTGGTACACGTAGTAGCCT
* *
70255020 GCACTTAGTACTACACACGTGACCTCGCCATCT-AGTACACGTAGTAGCCTGCACTTAGTACTAC
66 GCACTTAGTACTACACACGTGACCTCACCAT-TAAATACACGTAGTAGCCTGCACTTAGTACTAC
*
70255084 ACACGTGATCACAGTTTTCTA
130 ACACGTGATCACAGTTTTCGA
*
70255105 GTACGCATAGTAGCCTGCGCTTAGTACTACACATGC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGC
70255141 GACCTCACAA
Statistics
Matches: 177, Mismatches: 7, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
149 136 0.77
150 41 0.23
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (150 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAACAGTCTGGTACACGTAGTAGCCT
GCACTTAGTACTACACACGTGACCTCACCATTAAATACACGTAGTAGCCTGCACTTAGTACTACA
CACGTGATCACAGTTTTCGA
Found at i:70255246 original size:245 final size:244
Alignment explanation
Indices: 70254929--70255418 Score: 917
Period size: 245 Copynumber: 2.0 Consensus size: 244
70254919 CTGCACTTAG
70254929 TACTACACACGTGATCACAGTTTCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAAC
1 TACTACACACGTGATCACAGTTTCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAAC
*
70254994 CAACAGTCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCGCCATCTAGTACA
66 CAACAGTCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTCGCCATCTAGTACA
*
70255059 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCTAGTACGCATAGTAGCCTGCG
131 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGAGTACGCATAGTAGCCTGCG
70255124 CTTAGTACTACACATGCGACCTCACAATAGATCATTCGTATCGTTTTTA
196 CTTAGTACTACACATGCGACCTCACAATAGATCATTCGTATCGTTTTTA
* *
70255173 TACTACACACGTGATCACAGTTTTCGGGTACGCATAGTGGCCTGCACTTAGTACTACACATGCAA
1 TACTACACACGTGATCACAG-TTTCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAA
*
70255238 CCAACAGTCTGGTACATGTAGTAGCCTACACTTAGTACTACACACGTGACCTCGCCATCTAGTAC
65 CCAACAGTCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTCGCCATCTAGTAC
*
70255303 ACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGC
130 ACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGAGTACGCATAGTAGCCTGC
70255368 GCTTAGTACTACACATGCGACCTCACAATAGATCATTCGTATCGTTTTTA
195 GCTTAGTACTACACATGCGACCTCACAATAGATCATTCGTATCGTTTTTA
70255418 T
1 T
70255419 TCCGAAGGTT
Statistics
Matches: 239, Mismatches: 6, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
244 20 0.08
245 219 0.92
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (244 bp):
TACTACACACGTGATCACAGTTTCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAAC
CAACAGTCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTCGCCATCTAGTACA
CGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGAGTACGCATAGTAGCCTGCG
CTTAGTACTACACATGCGACCTCACAATAGATCATTCGTATCGTTTTTA
Found at i:70257564 original size:15 final size:15
Alignment explanation
Indices: 70257508--70257572 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
70257498 TAAAGATAAC
*
70257508 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
70257522 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
70257537 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
70257552 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
70257567 AAGAAA
1 AAGAAA
70257573 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Done.