Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 228 of 410
Found at i:70257574 original size:30 final size:31
Alignment explanation
Indices: 70257508--70257576 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
70257498 TAAAGATAAC
*
70257508 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
70257538 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
70257567 AAGAAACCCA
1 AAGAAACCCA
70257577 AGATACGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:70260688 original size:50 final size:49
Alignment explanation
Indices: 70260574--70260703 Score: 181
Period size: 50 Copynumber: 2.6 Consensus size: 49
70260564 CTGGTACGCA
* * *
70260574 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
* *
70260623 TAGTAGCCTGGACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
*
70260673 TAGTATCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
70260704 TCACAGTTTT
Statistics
Matches: 72, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
49 28 0.39
50 40 0.56
51 4 0.06
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:70262818 original size:37 final size:37
Alignment explanation
Indices: 70262764--70262871 Score: 189
Period size: 37 Copynumber: 2.9 Consensus size: 37
70262754 GCTCAGACGA
* *
70262764 AATCTCCACACGAAGTCATCGGGTCTTACCTGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
70262801 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
70262838 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
70262872 ATATATTTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:70262987 original size:48 final size:48
Alignment explanation
Indices: 70262916--70263659 Score: 938
Period size: 48 Copynumber: 15.0 Consensus size: 48
70262906 TGTTACAACC
* * * * * *
70262916 TTCACATTAGCCATTCGGCTTTACCGCATATTCATATCTCATACATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
70262964 TTCACATTCGCCATTCGGCTTTACGACATATACATATCTCATATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
70263012 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
70263060 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
70263108 TTCACATTAGCCATTCAGCTTTACCACATATACATATCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
70263156 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
70263204 TTCACATTCGCCATTCGGCTTTACCACATATTCATTTCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
* ** ** *
70263252 TTCACATTCG-TA-TCACACATATATTTCACAT-TCGCCAT-TCGGCTTTACCACATATACAT
1 TTCACATTCGCCATTC-GGC-T-T-TACCACATAT--ACATAT---C---A-CACATAT--AT
* * *
70263311 ATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCAC------A-TT--C---G-CCATTCGGCTTTACCACATATACATATCACACATATAT
*
70263372 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
70263420 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
* **
70263468 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCGTATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
70263516 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
70263564 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
70263612 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
70263660 ATATTTATCT
Statistics
Matches: 619, Mismatches: 45, Indels: 64
0.85 0.06 0.09
Matches are distributed among these distances:
46 2 0.00
47 2 0.00
48 548 0.89
49 2 0.00
50 7 0.01
51 3 0.00
52 1 0.00
53 1 0.00
54 2 0.00
55 1 0.00
56 1 0.00
57 7 0.01
59 6 0.01
61 6 0.01
63 7 0.01
64 1 0.00
65 1 0.00
66 2 0.00
67 1 0.00
68 1 0.00
69 3 0.00
70 7 0.01
71 2 0.00
72 1 0.00
73 2 0.00
74 2 0.00
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:70263267 original size:24 final size:24
Alignment explanation
Indices: 70263240--70263285 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
70263230 CATATTCATT
70263240 TCACACATATATTTCACATTCGTA
1 TCACACATATATTTCACATTCGTA
70263264 TCACACATATATTTCACATTCG
1 TCACACATATATTTCACATTCG
70263286 CCATTCGGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.26, G:0.04, T:0.37
Consensus pattern (24 bp):
TCACACATATATTTCACATTCGTA
Found at i:70263271 original size:72 final size:72
Alignment explanation
Indices: 70263190--70263333 Score: 270
Period size: 72 Copynumber: 2.0 Consensus size: 72
70263180 CACATATACA
* *
70263190 TATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATTCATTTCACACATATATTTC
1 TATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTC
70263255 ACATTCG
66 ACATTCG
70263262 TATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTC
1 TATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTC
70263327 ACATTCG
66 ACATTCG
70263334 CCATTCGGCT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 70 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.36
Consensus pattern (72 bp):
TATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTC
ACATTCG
Found at i:70270474 original size:40 final size:40
Alignment explanation
Indices: 70270380--70270604 Score: 299
Period size: 40 Copynumber: 5.6 Consensus size: 40
70270370 TATTCGAATG
* *
70270380 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * *
70270421 ATAACCGGACTAAGATCCGAAGGCATTCGTGCTAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* * *
70270461 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
**
70270501 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCAACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
70270541 ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
70270581 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
70270605 CTTGTGCAAG
Statistics
Matches: 160, Mismatches: 22, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 30 0.19
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:70270543 original size:80 final size:80
Alignment explanation
Indices: 70270380--70270640 Score: 319
Period size: 80 Copynumber: 3.3 Consensus size: 80
70270370 TATTCGAATG
* * * *
70270380 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
***
70270445 ATTCGTGCTAGTTGCT
65 ATTCGTGCTAGCAACT
* * * *
70270461 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
*
70270526 TTTGTGCTAGCAACT
66 TTCGTGCTAGCAACT
* * *
70270541 ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * **
70270606 TT-GTGCAAGTAGTT
66 TTCGTGCTAGCAACT
*
70270620 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
70270641 ATTACTTGAG
Statistics
Matches: 156, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 97 0.62
81 31 0.20
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCTAGCAACT
Found at i:70278673 original size:40 final size:40
Alignment explanation
Indices: 70278568--70278792 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
70278558 TATTCGAATG
* *
70278568 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACT
* * * * *
70278609 ATAACCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CGACT
* * *
70278649 ACATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
70278689 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * ** *
70278729 ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTAACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
70278769 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
70278793 CTTGTGCAAG
Statistics
Matches: 158, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 128 0.81
41 29 0.18
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:70278740 original size:80 final size:80
Alignment explanation
Indices: 70278568--70278819 Score: 303
Period size: 80 Copynumber: 3.2 Consensus size: 80
70278558 TATTCGAATG
* * * *
70278568 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAGACCCGAAGGC
*
70278633 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTCGCT
* * * *
70278649 ACATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGACCCGAAGGCA
*
70278714 TTTGTGCTAG-CGACT
66 TTTGTGCGAGTCG-CT
* ** *
70278729 ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTAACCATATCCGGGCTAAGACCCGAAGGC-
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGACCCGAAGGCA
* * * *
70278793 CTTGTGCAAGTAGTT
66 TTTGTGCGAGTCGCT
70278808 ATATCC-GGCTAA
1 ATATCCGGGCTAA
70278820 ATCGAAGATT
Statistics
Matches: 147, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 6 0.04
79 16 0.11
80 95 0.65
81 30 0.20
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTCGCT
Found at i:70278782 original size:120 final size:121
Alignment explanation
Indices: 70278568--70278792 Score: 328
Period size: 120 Copynumber: 1.9 Consensus size: 121
70278558 TATTCGAATG
* *
70278568 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* ** *
70278633 ATTTGTGCGAGTTGCTACATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATCTGTGCGAGTAACCACATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* *
70278689 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
70278752 CATCTGTGCTAGTAACCATATCCGGGCTAAGACCCGAAGGC
65 CATCTGTGCGAGTAACCACATCCAGGCTAAGACCCGAAGGC
70278793 CTTGTGCAAG
Statistics
Matches: 92, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
119 1 0.01
120 59 0.64
121 32 0.35
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (121 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATCTGTGCGAGTAACCACATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:70287093 original size:40 final size:40
Alignment explanation
Indices: 70287038--70287241 Score: 286
Period size: 40 Copynumber: 5.1 Consensus size: 40
70287028 TGGATGATAA
* * *
70287038 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
*
70287078 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
70287118 CCGGGCTAAGTCCCGAAAGCATTCGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
70287158 CCGGGCTAAGTCCCAAAGGCATTCGTTCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
70287198 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
70287238 CCGG
1 CCGG
70287242 TTAAATCCCA
Statistics
Matches: 149, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 3 0.02
40 146 0.98
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:70295231 original size:40 final size:40
Alignment explanation
Indices: 70295140--70295353 Score: 280
Period size: 39 Copynumber: 5.5 Consensus size: 40
70295130 TGGATGATAA
* * * *
70295140 CCGGGCTAAGTCCCAAAGGCATT-GCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
70295179 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
70295219 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
70295258 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* * *
70295298 CCGGGCTATGT--CGAAGGCATTCGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
70295336 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70295354 TACTTGGCTT
Statistics
Matches: 159, Mismatches: 10, Indels: 12
0.88 0.06 0.07
Matches are distributed among these distances:
37 7 0.04
38 24 0.15
39 68 0.43
40 60 0.38
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:70295271 original size:79 final size:80
Alignment explanation
Indices: 70295140--70295320 Score: 280
Period size: 79 Copynumber: 2.3 Consensus size: 80
70295130 TGGATGATAA
* * *
70295140 CCGGGCTAAGTCCCAAAGGCATT-GCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTCGCGCGAGTGACTAGATCCGGGCTAAGTCCCGAAGGCATTCG
70295204 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
* *
70295219 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-ATCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTCGCGCGAGTGACTAGATCCGGGCTAAGTCCCGAAGGCATTCG
70295283 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
*
70295298 CCGGGCTATGT--CGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTCG
70295321 AGTGAGTAGC
Statistics
Matches: 95, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
77 12 0.13
79 73 0.77
80 10 0.11
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGCGCGAGTGACTAGATCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGTTACTATAT
Found at i:70296882 original size:93 final size:93
Alignment explanation
Indices: 70296723--70296894 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
70296713 GGATGGTTGA
* * * *
70296723 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAGATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAGACGCCCAAACTCATTGAGT
70296788 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
70296816 GCATCCGACCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGC-GAACGCCCGAGCTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAG-ACGCCCAAACTCATTGAG
*
70296880 TTGAGTTCGAGTTCG
65 TTGAGTCCGAGTTCG
70296895 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAGACGCCCAAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70299766 original size:14 final size:15
Alignment explanation
Indices: 70299717--70299767 Score: 68
Period size: 15 Copynumber: 3.5 Consensus size: 15
70299707 GTATCTTGGG
*
70299717 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
70299732 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
70299747 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
70299761 TTTCTTT
1 TTTCTTT
70299768 TTATCTTTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 9 0.28
15 23 0.72
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:70302312 original size:46 final size:46
Alignment explanation
Indices: 70302148--70302321 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 46
70302138 GGTTGAGCAT
*
70302148 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * * *
70302193 TCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC
*
70302238 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
*
70302286 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70302322 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
42 6 0.06
44 4 0.04
45 27 0.25
46 34 0.31
47 27 0.25
48 5 0.05
50 6 0.06
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:70306303 original size:54 final size:54
Alignment explanation
Indices: 70306236--70306346 Score: 213
Period size: 54 Copynumber: 2.1 Consensus size: 54
70306226 TTAAAGCTTT
70306236 TCACCGTTCAGACATTTTAATACAACAAGATTTCATCTATAGTTCACAATAGCA
1 TCACCGTTCAGACATTTTAATACAACAAGATTTCATCTATAGTTCACAATAGCA
*
70306290 TCACCGTTCAGACATTTTAATACAATAAGATTTCATCTATAGTTCACAATAGCA
1 TCACCGTTCAGACATTTTAATACAACAAGATTTCATCTATAGTTCACAATAGCA
70306344 TCA
1 TCA
70306347 TGCAGAGGCA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (54 bp):
TCACCGTTCAGACATTTTAATACAACAAGATTTCATCTATAGTTCACAATAGCA
Found at i:70313057 original size:45 final size:42
Alignment explanation
Indices: 70312993--70313149 Score: 172
Period size: 42 Copynumber: 3.7 Consensus size: 42
70312983 TACCATACTA
* *
70312993 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCACATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCT--CATATCG
* * *
70313037 ATGCCAATAGCCCAGCTATGGTCTTACCCGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * *
70313080 GTGCCATATCTCAGATATGGTCTTACACGAAGTCTCATA-CTA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATC-G
* *
70313122 ATGTCATATCCCAGATATGATCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
70313150 ATAAACTTAA
Statistics
Matches: 95, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 1 0.01
42 53 0.56
43 11 0.12
44 5 0.05
45 25 0.26
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:70314953 original size:29 final size:29
Alignment explanation
Indices: 70314921--70314997 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 29
70314911 GGTCGTCACC
* **
70314921 ATCCCTTTTCATAATCGATAGATGAAGCT
1 ATCCCTTTTCATATTCGATAGACAAAGCT
* *
70314950 ATCCCTTTTCATATTTGATAGCCAAAGCT
1 ATCCCTTTTCATATTCGATAGACAAAGCT
70314979 AT-CCTTTCTCATATTCGAT
1 ATCCCTTT-TCATATTCGAT
70314998 GATCACCGAT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.39
Consensus pattern (29 bp):
ATCCCTTTTCATATTCGATAGACAAAGCT
Found at i:70314991 original size:58 final size:58
Alignment explanation
Indices: 70314886--70314997 Score: 138
Period size: 58 Copynumber: 1.9 Consensus size: 58
70314876 TTCGGTAGCC
* ***
70314886 GAAGCTATCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTCATAATCGATAGAT
1 GAAGCTATCCCTTTTCATATTTGATAGTCCAAACCATCCCTTTTCATAATCGATAGAT
* *
70314944 GAAGCTATCCCTTTTCATATTTGATAG-CCAAAGCTAT-CCTTTCTCATATTCGAT
1 GAAGCTATCCCTTTTCATATTTGATAGTCCAAA-CCATCCCTTT-TCATAATCGAT
70314998 GATCACCGAT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
57 7 0.15
58 39 0.85
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.38
Consensus pattern (58 bp):
GAAGCTATCCCTTTTCATATTTGATAGTCCAAACCATCCCTTTTCATAATCGATAGAT
Found at i:70319903 original size:40 final size:40
Alignment explanation
Indices: 70319691--70319895 Score: 308
Period size: 40 Copynumber: 5.2 Consensus size: 40
70319681 AACCCAAGTA
* * *
70319691 CCTTCGGGATTTAG-CTGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
70319730 CCTTCGGGACTTA-CCCTGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCC-GGATATAGTCACTAGCACAAATG
*
70319770 CCTTCGGGACTTAGCCCGGATATGGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
70319810 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
70319850 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
70319890 CCTTCG
1 CCTTCG
70319896 AATCTTAGTC
Statistics
Matches: 152, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 13 0.09
40 135 0.89
41 4 0.03
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:70321337 original size:13 final size:13
Alignment explanation
Indices: 70321321--70321348 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
70321311 TTTATTATTT
70321321 TTAACACAAAATA
1 TTAACACAAAATA
70321334 TTAACACAAAATA
1 TTAACACAAAATA
70321347 TT
1 TT
70321349 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:70326519 original size:29 final size:27
Alignment explanation
Indices: 70326485--70326587 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
70326475 TACTCAATCA
*
70326485 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
70326514 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
70326543 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
70326572 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
70326588 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:70334318 original size:29 final size:27
Alignment explanation
Indices: 70334284--70334386 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
70334274 TACTCAATCA
*
70334284 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
70334313 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
70334342 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
70334371 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
70334387 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:70338826 original size:40 final size:40
Alignment explanation
Indices: 70338614--70338819 Score: 335
Period size: 40 Copynumber: 5.2 Consensus size: 40
70338604 AACCCAAGTA
* *
70338614 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
70338653 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
70338693 CCTTCGGGACTTAGCCCAGATATGGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
70338733 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
70338773 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
70338813 CCTTCGG
1 CCTTCGG
70338820 ATCTTAGTCC
Statistics
Matches: 155, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 13 0.08
40 141 0.91
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:70339861 original size:13 final size:13
Alignment explanation
Indices: 70339845--70339872 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
70339835 TTTATTATTT
70339845 TTAACACAAAATA
1 TTAACACAAAATA
70339858 TTAACACAAAATA
1 TTAACACAAAATA
70339871 TT
1 TT
70339873 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:70341207 original size:42 final size:42
Alignment explanation
Indices: 70341086--70341207 Score: 124
Period size: 43 Copynumber: 2.9 Consensus size: 42
70341076 TACCATACCA
* * * *
70341086 ATGCCATATCCTAGGTATGGTCTTATATC-TAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CATAATCTCATATCG
* * *
70341128 ATGCCAATAGCCCA-ACTATGTTCTTACACGA-AGTCTCATATCG
1 ATGCC-ATATCCCAGA-TATGGTCTTACAC-ATAATCTCATATCG
70341171 ATGCCATATCCCAGATATGGTCTTACACATAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACATAATCTCA
70341208 GTAATCCTAA
Statistics
Matches: 64, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
41 1 0.02
42 31 0.48
43 32 0.50
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACATAATCTCATATCG
Found at i:70349931 original size:43 final size:43
Alignment explanation
Indices: 70349884--70350067 Score: 196
Period size: 43 Copynumber: 4.3 Consensus size: 43
70349874 ACCACATCTA
*
70349884 GGACATTGTCATCGATTTGAGTTTACGTGTAAGACCATGTCTG
1 GGACATTGGCATCGATTTGAGTTTACGTGTAAGACCATGTCTG
* *
70349927 GGACATTGGCATCAATTTGAGATTTACGTGTAAGACCATATCTG
1 GGACATTGGCATCGATTTGAG-TTTACGTGTAAGACCATGTCTG
* *
70349971 GGACATTGGCATCGTATTTGA-TTT-GGTGTAAGACCCTGTCTG
1 GGACATTGGCATCG-ATTTGAGTTTACGTGTAAGACCATGTCTG
* * * **
70350013 GGACAATAGCATCGATACTTGA--TTACATGTAAGACCACATCTG
1 GGACATTGGCATCGAT--TTGAGTTTACGTGTAAGACCATGTCTG
**
70350056 GGATGTTGGCAT
1 GGACATTGGCAT
70350068 TGTATGATCT
Statistics
Matches: 118, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
41 2 0.02
42 29 0.25
43 47 0.40
44 34 0.29
45 6 0.05
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
GGACATTGGCATCGATTTGAGTTTACGTGTAAGACCATGTCTG
Found at i:70349963 original size:44 final size:44
Alignment explanation
Indices: 70349884--70350017 Score: 177
Period size: 44 Copynumber: 3.1 Consensus size: 44
70349874 ACCACATCTA
* *
70349884 GGACATTGTCATCGATTTGAG-TTTACGTGTAAGACCATGTCTG
1 GGACATTGGCATCAATTTGAGATTTACGTGTAAGACCATGTCTG
*
70349927 GGACATTGGCATCAATTTGAGATTTACGTGTAAGACCATATCTG
1 GGACATTGGCATCAATTTGAGATTTACGTGTAAGACCATGTCTG
* * *
70349971 GGACATTGGCATCGTATTT--GATTT-GGTGTAAGACCCTGTCTG
1 GGACATTGGCATC-AATTTGAGATTTACGTGTAAGACCATGTCTG
70350013 GGACA
1 GGACA
70350018 ATAGCATCGA
Statistics
Matches: 82, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
42 20 0.24
43 24 0.29
44 34 0.41
45 4 0.05
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (44 bp):
GGACATTGGCATCAATTTGAGATTTACGTGTAAGACCATGTCTG
Found at i:70353565 original size:64 final size:64
Alignment explanation
Indices: 70353464--70353588 Score: 214
Period size: 64 Copynumber: 2.0 Consensus size: 64
70353454 GGTTTCAGGG
* *
70353464 CCACAAATCTGAGTCTGAACAATATTTTAATATTATTTTATGTGTTTGTGATATGTAAATTAGA
1 CCACAAATCTGAGTCTGAAAAATATTTTAATATTATTTTATGTGTCTGTGATATGTAAATTAGA
* *
70353528 CCACAAATCTGAGTGTGAAAAATATTTTAATATTATTTTATGTGTCTGTGATATGTGAATT
1 CCACAAATCTGAGTCTGAAAAATATTTTAATATTATTTTATGTGTCTGTGATATGTAAATT
70353589 TATATCTGTA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (64 bp):
CCACAAATCTGAGTCTGAAAAATATTTTAATATTATTTTATGTGTCTGTGATATGTAAATTAGA
Found at i:70354792 original size:42 final size:43
Alignment explanation
Indices: 70354680--70354815 Score: 109
Period size: 43 Copynumber: 3.2 Consensus size: 43
70354670 TGAGACATCG
* * * * *
70354680 TGTAAGACCGTGTCTGGGACACAGGCCTCG--ACTGAGATTGACG
1 TGTAAGACCATGTCTGGGACAGAGGCATCGATATTGA-ATT-ACA
* ** *
70354723 TATAAGACCATGTCTGGGACATTGGCATCG-TATCTG-ATTTCA
1 TGTAAGACCATGTCTGGGACAGAGGCATCGATAT-TGAATTACA
* * *
70354765 TGTAAGACCCTGTTTGGGACAGAGGCATTGATATTGAATTACA
1 TGTAAGACCATGTCTGGGACAGAGGCATCGATATTGAATTACA
70354808 TGTAAGAC
1 TGTAAGAC
70354816 TACGTCCAGT
Statistics
Matches: 74, Mismatches: 15, Indels: 8
0.76 0.15 0.08
Matches are distributed among these distances:
42 27 0.36
43 44 0.59
44 1 0.01
45 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.28
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGAGGCATCGATATTGAATTACA
Found at i:70359143 original size:46 final size:46
Alignment explanation
Indices: 70359054--70359143 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
70359044 ATATCTAATA
* *
70359054 ATAAAAATTTCAAATATCAATAATACAGTAAATAATAATAATTTTC
1 ATAAAAATTTAAAATATCAATAATACAGTAAATAATAAGAATTTTC
**
70359100 ATAAAAATTTAAAATATCCGTAATA-A-TAAATATAGTAAGAATTT
1 ATAAAAATTTAAAATATCAATAATACAGTAAATA-A-TAAGAATTT
70359144 CCTAGTAGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
44 6 0.16
45 2 0.05
46 30 0.79
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.34
Consensus pattern (46 bp):
ATAAAAATTTAAAATATCAATAATACAGTAAATAATAAGAATTTTC
Found at i:70362107 original size:39 final size:40
Alignment explanation
Indices: 70362060--70362198 Score: 142
Period size: 40 Copynumber: 3.5 Consensus size: 40
70362050 CGGACTAGGA
*
70362060 TCCC-AAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG
1 TCCCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAG
* * *
70362099 -CCCGAAGGCATT-GTGCAAGTTACTAAACCCGGGTTAAG
1 TCCCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAG
*** **
70362137 TCCCGAAGGCATTCGTGCGAGTCGCTATAA-CCGGGCTTCG
1 TCCCGAAGGCATTCGTGCGAGTTAATA-AACCCGGGCTAAG
* *
70362177 TCCCGAAGGCATTTGAGCGAGT
1 TCCCGAAGGCATTCGTGCGAGT
70362199 CGTTATATCC
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
38 25 0.30
39 20 0.24
40 37 0.44
41 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
TCCCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAG
Found at i:70362156 original size:78 final size:80
Alignment explanation
Indices: 70362008--70362189 Score: 201
Period size: 78 Copynumber: 2.3 Consensus size: 80
70361998 TCGAATGATG
* * ** *
70362008 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATTCGGACTAGGATCCCAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCCAAGGCATTC
70362073 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
70362088 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCC-AAGGCATT
***
70362150 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
70362167 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70362190 TGAGCGAGTC
Statistics
Matches: 86, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
77 4 0.05
78 42 0.49
79 29 0.34
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCCAAGGCATTC
GTGCGAGTTAATAAA
Found at i:70363611 original size:12 final size:12
Alignment explanation
Indices: 70363594--70363623 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
70363584 CTGATCTGAG
70363594 GCCAGAACACCT
1 GCCAGAACACCT
70363606 GCCAGAACACCT
1 GCCAGAACACCT
70363618 GCCAGA
1 GCCAGA
70363624 GCCTATGCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.33, C:0.40, G:0.20, T:0.07
Consensus pattern (12 bp):
GCCAGAACACCT
Found at i:70374929 original size:40 final size:40
Alignment explanation
Indices: 70374885--70375015 Score: 165
Period size: 40 Copynumber: 3.3 Consensus size: 40
70374875 ATGACAATTT
* * *
70374885 GGCTATGTACGACACTTAGTGTGCGACTCAAGATAGCTTC
1 GGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGCTTC
* *
70374925 GGCTATATATGGCACTTAGTGTGCGATTCAAGATAGCTCC
1 GGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGCTTC
* * * *
70374965 GACTATGTATGGCACTTAGTGCGCGATTAAAGAT-GACTTT
1 GGCTATGTATGGCACTTAGTGTGCGATTCAAGATAG-CTTC
70375005 GGCTATGTATG
1 GGCTATGTATG
70375016 TGTAACGTCC
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 1 0.01
40 77 0.99
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (40 bp):
GGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGCTTC
Found at i:70390589 original size:46 final size:48
Alignment explanation
Indices: 70390477--70390645 Score: 225
Period size: 48 Copynumber: 3.6 Consensus size: 48
70390467 CGATATGTGT
* * *
70390477 GCTAGTGTAAGACATGTTTGGAACATGCATCAGCCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
* * ** *
70390525 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
*
70390571 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
* *
70390619 GCTAGTGTAAGACCTATCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
70390646 GCGTCAGCTT
Statistics
Matches: 103, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
46 39 0.38
47 2 0.02
48 62 0.60
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
Found at i:70393905 original size:40 final size:39
Alignment explanation
Indices: 70393740--70393923 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
70393730 AAATTGAATG
* * *
70393740 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
70393780 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
70393820 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
70393860 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
70393899 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
70393924 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:70393948 original size:80 final size:81
Alignment explanation
Indices: 70393780--70393968 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
70393770 GCTGGAAATT
* * * *
70393780 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
70393845 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
70393861 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
70393924 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
70393940 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
70393969 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:70401845 original size:40 final size:39
Alignment explanation
Indices: 70401757--70401909 Score: 134
Period size: 40 Copynumber: 3.9 Consensus size: 39
70401747 AAATTGAATG
* * * *
70401757 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGCAA-T-TG-TGCAAGTGCT
* * *
70401797 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGT-GCT
*
70401837 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT-CAT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGC-T
* *
70401876 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAA
70401910 ATCGTGATAT
Statistics
Matches: 94, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
37 4 0.04
38 3 0.03
39 33 0.35
40 54 0.57
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCT
Found at i:70401891 original size:39 final size:38
Alignment explanation
Indices: 70401796--70401907 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 38
70401786 TGCTGGAAAT
* * *
70401796 TATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGT-GC
70401836 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-C
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGC
*
70401874 ATTTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 -TATATCCGGGCTAAGACCCGAAGGCA-TTGTGC
70401908 AAATCGTGAT
Statistics
Matches: 65, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
38 1 0.02
39 32 0.49
40 32 0.49
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGC
Found at i:70401920 original size:79 final size:79
Alignment explanation
Indices: 70401801--70401948 Score: 190
Period size: 79 Copynumber: 1.9 Consensus size: 79
70401791 GAAATTATAA
* * * *
70401801 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
70401866 TGCGAGTCATTTAT
66 TGCGAGTCATTTAT
* * * * * *
70401880 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ATATCCGGGCTAAGACCCGAAGGCATTC
70401944 GTGCG
65 GTGCG
70401949 GGTTACCATA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
78 1 0.02
79 57 0.98
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATTTAT
Found at i:70406262 original size:40 final size:38
Alignment explanation
Indices: 70406213--70406356 Score: 137
Period size: 40 Copynumber: 3.7 Consensus size: 38
70406203 TGCTGGAAAT
* * *
70406213 TATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTCG
*
70406252 CTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCAT
1 -TATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AGTC-G
* * *
70406293 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAATCG
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTCG
* * *
70406331 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
70406357 CTTGGTGCGG
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 26 0.30
40 58 0.67
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTCG
Found at i:70406383 original size:79 final size:81
Alignment explanation
Indices: 70406214--70406396 Score: 194
Period size: 79 Copynumber: 2.3 Consensus size: 81
70406204 GCTGGAAATT
* * *
70406214 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCA
*
70406279 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * *
70406295 -TATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCTAATCGCT-ATATCCGGGCTAAGACCCGAAGGC
* * * *
70406357 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* *
70406373 ATAACCGGGCTATGTCCCGAAGGC
1 ATAACCGGGCTAAGACCCGAAGGC
70406397 GTTGAACGAG
Statistics
Matches: 84, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
78 2 0.02
79 54 0.64
80 28 0.33
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:70414337 original size:38 final size:39
Alignment explanation
Indices: 70414282--70414385 Score: 120
Period size: 40 Copynumber: 2.7 Consensus size: 39
70414272 TGCTGGAAAT
* * * **
70414282 TATAACCGGGTTAAGACCCGAAGGCAAT-TGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATCTGCGAGTCAC
* *
70414320 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCAATC-TGCGAGTCAC
*
70414360 TCTATCCGGGCTAAGACCCGAAGGCA
1 TATATCCGGGCTAAGACCCGAAGGCA
70414386 TTTGTGCAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 25 0.45
40 31 0.55
ACGTcount: A:0.27, C:0.25, G:0.28, T:0.20
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCAATCTGCGAGTCAC
Found at i:70432900 original size:36 final size:36
Alignment explanation
Indices: 70432835--70432903 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
70432825 AGCACATTAG
* *
70432835 TCAGAATAGATTCGAAAGGCTGTTGAACTGAATCAA
1 TCAGAATAGATCCGAAAGACTGTTGAACTGAATCAA
*
70432871 TCAGAATAGATCCGCAAGACTGCTT-AACTGAAT
1 TCAGAATAGATCCGAAAGACTG-TTGAACTGAAT
70432904 AAAGTTTACT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
36 27 0.93
37 2 0.07
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (36 bp):
TCAGAATAGATCCGAAAGACTGTTGAACTGAATCAA
Found at i:70433898 original size:14 final size:15
Alignment explanation
Indices: 70433875--70433909 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
70433865 CTCTACTAAC
*
70433875 TTATTCTTTATTT-T
1 TTATTATTTATTTAT
70433889 TTATTATTTATTTAT
1 TTATTATTTATTTAT
70433904 TTATTA
1 TTATTA
70433910 GGTGCTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (15 bp):
TTATTATTTATTTAT
Found at i:70434012 original size:30 final size:30
Alignment explanation
Indices: 70433978--70434064 Score: 91
Period size: 30 Copynumber: 3.2 Consensus size: 30
70433968 GAGGACTTTT
70433978 AGACAAAGAAGATGTGAGAGATCTGCTCAA
1 AGACAAAGAAGATGTGAGAGATCTGCTCAA
**
70434008 AGAC-----A-A-G-CCGAGATCTGCTCAA
1 AGACAAAGAAGATGTGAGAGATCTGCTCAA
*
70434030 AGACAAAGAAGATGTGAGAGATCTGGTCAA
1 AGACAAAGAAGATGTGAGAGATCTGCTCAA
70434060 AGACA
1 AGACA
70434065 TTGGAAATCA
Statistics
Matches: 44, Mismatches: 5, Indels: 16
0.68 0.08 0.25
Matches are distributed among these distances:
22 17 0.39
23 1 0.02
24 1 0.02
25 1 0.02
27 1 0.02
28 1 0.02
29 1 0.02
30 21 0.48
ACGTcount: A:0.43, C:0.16, G:0.26, T:0.15
Consensus pattern (30 bp):
AGACAAAGAAGATGTGAGAGATCTGCTCAA
Found at i:70436124 original size:13 final size:14
Alignment explanation
Indices: 70436106--70436140 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
70436096 CTGGTGTGCT
*
70436106 TATGATTTACATA-
1 TATGATTTACAGAG
70436119 TATGATTTACAGAG
1 TATGATTTACAGAG
70436133 TATGATTT
1 TATGATTT
70436141 TGCATACACG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.34, C:0.06, G:0.14, T:0.46
Consensus pattern (14 bp):
TATGATTTACAGAG
Found at i:70440968 original size:47 final size:46
Alignment explanation
Indices: 70440900--70441161 Score: 210
Period size: 47 Copynumber: 5.6 Consensus size: 46
70440890 TTTGTGTGCT
*
70440900 AGTGTAAGACATGTCTAGGACATGCATCAGC-CACATTATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCGCACA-TATGAGAGCC
* * * * * *
70440946 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGATGAGTGCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCGCACATATGAGAGCC
* *
70440994 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCAACA-ATGATAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGG-CGC-ACATATGAGAGCC
* * * * ** * *
70441041 AGTGTAAGACATGTCTGGGACATGCATTGGC-TA-AGATTTGTGCT
1 AGTGTAAGACATGTCTAGGACATGCATCGGCGCACATATGAGAGCC
* *
70441085 AGTGTAAGACATGTCTAGGACATGCATCAGTACGTC-CATACGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATC-G-GCG-CACATATGAGAGCC
* *
70441133 AGTGTAAAACCATGTCTGGGACATAGCAT
1 AGTGTAAGA-CATGTCTAGGACAT-GCAT
70441162 TGGCAACTTA
Statistics
Matches: 169, Mismatches: 34, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
43 1 0.01
44 31 0.18
45 1 0.01
46 18 0.11
47 61 0.36
48 38 0.22
49 15 0.09
50 4 0.02
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCGCACATATGAGAGCC
Found at i:70441056 original size:94 final size:91
Alignment explanation
Indices: 70440895--70441161 Score: 340
Period size: 94 Copynumber: 2.9 Consensus size: 91
70440885 GGTAATTTGT
**
70440895 GTGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATG
1 GTGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACACAATGAGAGCCAGTGTAAGACCATG
70440960 TCTGGGACATGGCATCGGCGTAGAGATGA
66 TCTGGGACAT-GCATCGGC-TA-AGATGA
* * *
70440989 GTGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCAACAATGATAGCCAGTGTAAGA-CAT
1 GTGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCAC-ACAATGAGAGCCAGTGTAAGACCAT
* **
70441053 GTCTGGGACATGCATTGGCTAAGATTT
65 GTCTGGGACATGCATCGGCTAAGATGA
* * * *
70441080 GTGCTAGTGTAAGACATGTCTAGGACATGCATCAG-TACGTCCATACGAGAGCCAGTGTAAAACC
1 GTGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCAC--ACA-ATGAGAGCCAGTGTAAGACC
70441144 ATGTCTGGGACATAGCAT
63 ATGTCTGGGACAT-GCAT
70441162 TGGCAACTTA
Statistics
Matches: 152, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
90 1 0.01
91 40 0.26
92 17 0.11
93 21 0.14
94 55 0.36
95 18 0.12
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (91 bp):
GTGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACACAATGAGAGCCAGTGTAAGACCATG
TCTGGGACATGCATCGGCTAAGATGA
Found at i:70444043 original size:21 final size:21
Alignment explanation
Indices: 70444004--70444043 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
70443994 AGACTAAACT
* *
70444004 GAAAACTTTGAGAAGTTTCAG
1 GAAAACTTAGAAAAGTTTCAG
*
70444025 GAAAACTTAGAAAATTTTC
1 GAAAACTTAGAAAAGTTTC
70444044 CCATAGAACA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.30
Consensus pattern (21 bp):
GAAAACTTAGAAAAGTTTCAG
Found at i:70445901 original size:40 final size:40
Alignment explanation
Indices: 70445793--70446002 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
70445783 CGGGATTTAA
* * * * *
70445793 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
70445833 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70445873 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70445913 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70445953 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70445993 CCGGATATAT
1 CCGGATATAT
70446003 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:70454035 original size:40 final size:40
Alignment explanation
Indices: 70453927--70454136 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
70453917 CGGGATTTAA
* * * * *
70453927 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
70453967 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70454007 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70454047 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70454087 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70454127 CCGGATATAT
1 CCGGATATAT
70454137 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:70456047 original size:13 final size:13
Alignment explanation
Indices: 70456029--70456055 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70456019 CCACCTCAAT
70456029 TGGGAAACAAACA
1 TGGGAAACAAACA
70456042 TGGGAAACAAACA
1 TGGGAAACAAACA
70456055 T
1 T
70456056 AATCGCATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.15, G:0.22, T:0.11
Consensus pattern (13 bp):
TGGGAAACAAACA
Found at i:70457523 original size:47 final size:46
Alignment explanation
Indices: 70457472--70457638 Score: 149
Period size: 49 Copynumber: 3.6 Consensus size: 46
70457462 ACATCAAAGT
* * *
70457472 TGATGCCATGTCCTAGACAGGTCTTACTGACTTTCATATATCGAGG
1 TGATGCCATGTCCCAGACAGGTCTTACTGACTCTCATATATCAAGG
* * * * *
70457518 CTGATGCCGTGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCAATG
1 -TGATGCCATGTCCCAGACAGGTCTT--ACTGACTCTCATATATCAAGG
** * * * *
70457567 TCGATGCCATGTCCCAGACAGGTCTTAC--ACTAACACACAACAAGC
1 T-GATGCCATGTCCCAGACAGGTCTTACTGACTCTCATATATCAAGG
*
70457612 TGAAGCCATGTCCCAGACAGGTCTTAC
1 TGATGCCATGTCCCAGACAGGTCTTAC
70457639 ACTAGCTTGT
Statistics
Matches: 97, Mismatches: 20, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
44 25 0.26
45 9 0.09
47 24 0.25
48 1 0.01
49 38 0.39
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (46 bp):
TGATGCCATGTCCCAGACAGGTCTTACTGACTCTCATATATCAAGG
Found at i:70457580 original size:49 final size:48
Alignment explanation
Indices: 70457424--70457781 Score: 199
Period size: 46 Copynumber: 7.6 Consensus size: 48
70457414 GATAAGATGC
* *
70457424 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTAGCA-C-ATCAAAGT
1 CGATGCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATC-AAGT
* * * * * * *
70457472 TGATGCCATGTCCTAGACAGGTCTT--ACTGACTTTCATATATCGAGG
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAAGT
* * *
70457518 CTGATGCCGTGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCAATGT
1 C-GATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAA-GT
** *
70457568 CGATGCCATGTCCCAGACAGGTCTTACACTAAC-A-CA-C-AACAAG-
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAAGT
* * * * * * *
70457611 CTGAAGCCATGTCCCAGACAGGTCTTACACTAGCT-TGTATATCTCGAGG
1 C-GATGCCATGTCCCAGACAGGTCTTACACTGGCTAT-CATCTATCAAGT
* ** * * *
70457660 CTGATG-CATGTCCCAAACACATCTTACACTAGCTCTCGTC--TCAATGT
1 C-GATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAA-GT
* * * * *** *
70457707 CGATG-CATGTCCCAGACATGTCTTACATTGGCTCTCAT-AATGTGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAAGT
*
70457753 CGATG-CATGTCCCAGACATGTCTTACACT
1 CGATGCCATGTCCCAGACAGGTCTTACACT
70457782 AGCACACATA
Statistics
Matches: 242, Mismatches: 51, Indels: 36
0.74 0.16 0.11
Matches are distributed among these distances:
43 1 0.00
44 31 0.13
45 11 0.05
46 67 0.28
47 35 0.14
48 46 0.19
49 49 0.20
50 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCAAGT
Found at i:70473994 original size:19 final size:19
Alignment explanation
Indices: 70473970--70474008 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
70473960 TTGAGTTCTA
*
70473970 CCTAGCCCATGTTTTAAAT
1 CCTAGCCCATGGTTTAAAT
70473989 CCTAGCCCATGGTTTAAAT
1 CCTAGCCCATGGTTTAAAT
70474008 C
1 C
70474009 TTTGCTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.33
Consensus pattern (19 bp):
CCTAGCCCATGGTTTAAAT
Found at i:70475158 original size:41 final size:42
Alignment explanation
Indices: 70475101--70475249 Score: 200
Period size: 41 Copynumber: 3.6 Consensus size: 42
70475091 GATGATAACT
70475101 GGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGAATAGTTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGCTAGTGAATAGTTTC
**
70475142 GGGCTAAGTCCCGAAGGCATTT-TAAGCTAGTGAATAGTTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGCTAGTGAATAGTTTC
* * *
70475183 GAGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGCTAGTGAATAGT-TTC
*
70475223 GGGCTAAGTTCCGAAGGCATTTGTGCG
1 GGGCTAAGTCCCGAAGGCATTTGTGCG
70475250 AGTTACTATA
Statistics
Matches: 97, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 34 0.35
41 60 0.62
42 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (42 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGCTAGTGAATAGTTTC
Found at i:70475240 original size:40 final size:40
Alignment explanation
Indices: 70475101--70475300 Score: 194
Period size: 40 Copynumber: 5.0 Consensus size: 40
70475091 GATGATAACT
* *
70475101 GGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGAATAGT-TTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TATTC
* * *
70475142 GGGCTAAGTCCCGAAGGCATTT-TAAGCTAGTGAATAGT-TTC
1 GGGCTAAGTCCCGAAGGCATTTGT--GCGAGTTACTA-TATTC
*
70475183 GAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTC
* *
70475223 GGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTC
* * * *
70475263 GGGCTATGTCTCGAAGGCATTCGAGCGAG-TAGCTATAT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
70475301 CCGGTTAAAT
Statistics
Matches: 141, Mismatches: 13, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
39 3 0.02
40 78 0.55
41 57 0.40
42 1 0.01
43 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTC
Found at i:70476822 original size:27 final size:26
Alignment explanation
Indices: 70476774--70476833 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
70476764 GCGAGGCTGC
*
70476774 CAGATATTGTGACAAAGTCACCAAATA
1 CAGATATTGTGACAAAGCCACCAAA-A
* * *
70476801 CAGATATTGTGTCTAAGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAAAA
70476827 CAGATAT
1 CAGATAT
70476834 ACATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAAAA
Found at i:70476843 original size:2 final size:2
Alignment explanation
Indices: 70476830--70476861 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
70476820 ACCAGAACAG
*
70476830 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
70476862 GTGGCGAAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:70483745 original size:17 final size:17
Alignment explanation
Indices: 70483719--70483768 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
70483709 TCGTCATAGT
*
70483719 ATAAATATAATTAGAAA
1 ATAAAAATAATTAGAAA
70483736 ATAAAAATAA-TA-AAA
1 ATAAAAATAATTAGAAA
*
70483751 AT-AAATTAACTTAGAAA
1 ATAAAAATAA-TTAGAAA
70483768 A
1 A
70483769 ACAAACTTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
14 6 0.21
15 5 0.18
16 4 0.14
17 13 0.46
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (17 bp):
ATAAAAATAATTAGAAA
Found at i:70484175 original size:27 final size:26
Alignment explanation
Indices: 70484127--70484186 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
70484117 GCGAGGCTGC
*
70484127 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
70484154 CAGATATTGTGTCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
70484180 CAAATAT
1 CAGATAT
70484187 ATATATATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:70489700 original size:42 final size:42
Alignment explanation
Indices: 70489634--70489748 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 42
70489624 GCATTGATTT
* *
70489634 GTGATTTACATGTAAGACCATGTCTGGGAC-ATCGGCATCGTATA
1 GTGA-TTACATGTAAGACCTTGTCTGGGACAAT-GACATCG-ATA
70489678 -TGAGTT-CATGTAAGACCTTGTCTGGGACAATGACATCGATA
1 GTGA-TTACATGTAAGACCTTGTCTGGGACAATGACATCGATA
* *
70489719 GTTGATTACATGCAAGACCTCGTCTGGGAC
1 G-TGATTACATGTAAGACCTTGTCTGGGAC
70489749 GTAGGCATTG
Statistics
Matches: 62, Mismatches: 5, Indels: 9
0.82 0.07 0.12
Matches are distributed among these distances:
41 3 0.05
42 29 0.47
43 30 0.48
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (42 bp):
GTGATTACATGTAAGACCTTGTCTGGGACAATGACATCGATA
Found at i:70489748 original size:43 final size:42
Alignment explanation
Indices: 70489639--70489748 Score: 120
Period size: 42 Copynumber: 2.6 Consensus size: 42
70489629 GATTTGTGAT
*
70489639 TTACATGTAAGACCATGTCTGGGACATCGGCATCGTATATGAG
1 TTACATGTAAGACC-TGTCTGGGACATCGACATCGTATATGAG
70489682 TT-CATGTAAGACCTTGTCTGGGACAAT-GACATCG-ATAGTTGA-
1 TTACATGTAAGACC-TGTCTGGGAC-ATCGACATCGTATA--TGAG
*
70489724 TTACATGCAAGACCTCGTCTGGGAC
1 TTACATGTAAGACCT-GTCTGGGAC
70489749 GTAGGCATTG
Statistics
Matches: 59, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
41 3 0.05
42 30 0.51
43 26 0.44
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (42 bp):
TTACATGTAAGACCTGTCTGGGACATCGACATCGTATATGAG
Found at i:70501518 original size:24 final size:24
Alignment explanation
Indices: 70501491--70501577 Score: 174
Period size: 24 Copynumber: 3.6 Consensus size: 24
70501481 CTTATTATGT
70501491 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
70501515 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
70501539 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
70501563 TCGCACACATAGTGC
1 TCGCACACATAGTGC
70501578 ATTTGAGATT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 63 1.00
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:70507584 original size:51 final size:51
Alignment explanation
Indices: 70507497--70507639 Score: 133
Period size: 51 Copynumber: 3.0 Consensus size: 51
70507487 CTACCTTATA
* * *
70507497 ACATGTAACACATCCATAATGAACTCGAACCT-CTCAATGAGCTCAGATGTT
1 ACATGTATCGCATCCATAATGAACTCGGA-CTACTCAATGAGCTCAGATGTT
* *
70507548 ACATGTATCGCATCCATTATGAACTCGGACTACTC-A--A-C-GAGA--TT
1 ACATGTATCGCATCCATAATGAACTCGGACTACTCAATGAGCTCAGATGTT
* * * *
70507592 ATATG-CTCGCATCCATAATGAAGTCGGACCACTCAATGAGCTCAGATG
1 ACATGTATCGCATCCATAATGAACTCGGACTACTCAATGAGCTCAGATG
70507640 CCTCATATAT
Statistics
Matches: 73, Mismatches: 11, Indels: 17
0.72 0.11 0.17
Matches are distributed among these distances:
43 25 0.34
44 7 0.10
46 4 0.05
47 2 0.03
48 4 0.05
50 3 0.04
51 28 0.38
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (51 bp):
ACATGTATCGCATCCATAATGAACTCGGACTACTCAATGAGCTCAGATGTT
Found at i:70509530 original size:24 final size:24
Alignment explanation
Indices: 70509498--70509547 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
70509488 TACATCATGG
70509498 ATCTCAATCTGATTAACAAAAACT
1 ATCTCAATCTGATTAACAAAAACT
70509522 ATCTCAATCTGATTAACAAAAACT
1 ATCTCAATCTGATTAACAAAAACT
70509546 AT
1 AT
70509548 AATTTTAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.20, G:0.04, T:0.30
Consensus pattern (24 bp):
ATCTCAATCTGATTAACAAAAACT
Found at i:70510821 original size:15 final size:15
Alignment explanation
Indices: 70510778--70510821 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
70510768 GACCAAAATA
*
70510778 AAGAAATCCAAGACAG
1 AAGAAATCCAAGA-TG
70510794 AA-AAATCCAAGATG
1 AAGAAATCCAAGATG
70510808 AAGAAATCCAAGAT
1 AAGAAATCCAAGAT
70510822 ACAAAATTCC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 3 0.12
15 21 0.81
16 2 0.08
ACGTcount: A:0.57, C:0.16, G:0.16, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAAGATG
Found at i:70510832 original size:15 final size:14
Alignment explanation
Indices: 70510781--70510840 Score: 50
Period size: 15 Copynumber: 4.1 Consensus size: 14
70510771 CAAAATAAAG
* *
70510781 AAATCCAAGACAGAA
1 AAATCCAAGATA-CA
70510796 AAATCCAAGATGA-A
1 AAATCCAAGAT-ACA
70510810 GAAATCCAAGATACA
1 -AAATCCAAGATACA
*
70510825 AAATTCCAATATACA
1 AAA-TCCAAGATACA
70510840 A
1 A
70510841 TACTGTACCA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
14 5 0.13
15 33 0.85
16 1 0.03
ACGTcount: A:0.57, C:0.18, G:0.10, T:0.15
Consensus pattern (14 bp):
AAATCCAAGATACA
Found at i:70513480 original size:53 final size:53
Alignment explanation
Indices: 70513396--70513500 Score: 138
Period size: 53 Copynumber: 2.0 Consensus size: 53
70513386 TTCCTTTTTA
* * * * *
70513396 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATAGTCTTACATGGGATCCTTGCCTTATG
* * *
70513449 AACTCACCGTTGCCATGCCTTGGCATAGTCTTACATGGGATCTTTGCCTTAT
1 AACTCACCATTGCCATGCCTTGACATAGTCTTACATGGGATCCTTGCCTTAT
70513501 AATAGTTTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATAGTCTTACATGGGATCCTTGCCTTATG
Found at i:70515555 original size:47 final size:46
Alignment explanation
Indices: 70515452--70515571 Score: 165
Period size: 47 Copynumber: 2.6 Consensus size: 46
70515442 TATGTGTGCT
70515452 AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGTATGAGAGCC
* *
70515498 AGTGTAAGACATATCT-GGACATGCATCAGCC-TCGAGATATTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT--AG-TA-TGAGAGCC
70515545 AGTGTAAGACATGTCTGGGACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
70515572 TTGTATTGAG
Statistics
Matches: 66, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
44 1 0.02
45 15 0.23
46 17 0.26
47 21 0.32
48 12 0.18
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGTATGAGAGCC
Found at i:70515599 original size:93 final size:94
Alignment explanation
Indices: 70515452--70515662 Score: 250
Period size: 93 Copynumber: 2.3 Consensus size: 94
70515442 TATGTGTGCT
* *
70515452 AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGTATGAGAGCCAGTGTAAGACATATCT-GG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGTACGAGAGCCAGTGTAAGACATATCTAAG
**
70515516 ACATGCATCAGCCTCGAGATATTTAAGCC
66 ACATGCATCAGCCTCGAGATATACAAGCC
** * * *
70515545 AGTGTAAGACATGTCTGGGACATGCATTTG-TATTGAG-ACGAGAGCTAGTGTAAGACATGTCTA
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCA-T-AGTACGAGAGCCAGTGTAAGACATATCTA
* ** *
70515608 AGACATGCATCGGCCTCGCTATATACAAGCT
64 AGACATGCATCAGCCTCGAGATATACAAGCC
70515639 AGTGTAAGACCA-GTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
70515663 GCGTCAGCTT
Statistics
Matches: 101, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
92 1 0.01
93 51 0.50
94 47 0.47
95 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGTACGAGAGCCAGTGTAAGACATATCTAAG
ACATGCATCAGCCTCGAGATATACAAGCC
Found at i:70523613 original size:32 final size:32
Alignment explanation
Indices: 70523513--70523623 Score: 132
Period size: 32 Copynumber: 3.5 Consensus size: 32
70523503 ACAGTCTTAA
* *
70523513 TTGGGCCTAGCCCATCTCAGAATCAATATCAG
1 TTGGGCCTAGCCCATATCAGAACCAATATCAG
* *** * * *
70523545 TTCGATGTAGCCCATATCAAAACCAGTATCAA
1 TTGGGCCTAGCCCATATCAGAACCAATATCAG
70523577 TTGGGCCTAGCCCATATCAGAACCAATATCAG
1 TTGGGCCTAGCCCATATCAGAACCAATATCAG
*
70523609 TTGGGCCTCGCCCAT
1 TTGGGCCTAGCCCAT
70523624 TTCAATATCA
Statistics
Matches: 62, Mismatches: 17, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (32 bp):
TTGGGCCTAGCCCATATCAGAACCAATATCAG
Found at i:70526259 original size:27 final size:27
Alignment explanation
Indices: 70526229--70526292 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
70526219 CGACTTGTAA
*
70526229 AATTACCAAAGTACTCCCGATTTACAG
1 AATTACCAAAGTACTCCCAATTTACAG
**** *
70526256 AATTACCGTTTTACTCTCAATTTACAG
1 AATTACCAAAGTACTCCCAATTTACAG
70526283 AATTACCAAA
1 AATTACCAAA
70526293 ATACCCTTGG
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACTCCCAATTTACAG
Found at i:70526306 original size:27 final size:27
Alignment explanation
Indices: 70526283--70526406 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
70526273 CAATTTACAG
70526283 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
70526310 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
70526337 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
70526364 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
70526391 AATTACTAAAATACCC
1 AATTACCAAAATACCC
70526407 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:70526342 original size:54 final size:54
Alignment explanation
Indices: 70526283--70526406 Score: 203
Period size: 54 Copynumber: 2.3 Consensus size: 54
70526273 CAATTTACAG
* * *
70526283 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATGGTTTGAAA
* *
70526337 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATGGTTTGAAA
70526391 AATTACTAAAATACCC
1 AATTACTAAAATACCC
70526407 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATGGTTTGAAA
Found at i:70526368 original size:81 final size:81
Alignment explanation
Indices: 70526283--70526435 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
70526273 CAATTTACAG
* **
70526283 AATTACCAAAATACCCTTGGTTT-ATAAAATCACCAAAATACCCCTGGT-TTGTAAAATTACTAA
1 AATTACCAAAATACCCATGGTTTGA-AAAATCACCAAAATACCCCT-GTAGGGTAAAATTACTAA
70526346 AATACCCTTTGTTTATAA
64 AATACCCTTTGTTTATAA
* * *
70526364 AATTACCAAAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGTAAAATTACTGAAA
1 AATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTAAAA
70526429 TACCCTT
66 TACCCTT
70526436 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:70526419 original size:27 final size:27
Alignment explanation
Indices: 70526389--70526450 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
70526379 CATGGTTTGA
70526389 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
70526416 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
70526443 AAAATTAC
1 AAAATTAC
70526451 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:70526419 original size:54 final size:54
Alignment explanation
Indices: 70526283--70526433 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
70526273 CAATTTACAG
* ** * * *
70526283 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
70526337 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
70526391 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
70526434 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:70527104 original size:28 final size:28
Alignment explanation
Indices: 70527071--70527139 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
70527061 GCGTAGATCA
70527071 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
70527099 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
70527127 CGATA-TACCCCTA
1 CGAAATTACCCCTA
70527140 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:70533840 original size:18 final size:18
Alignment explanation
Indices: 70533817--70533852 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
70533807 AAGATGGTTG
70533817 GAGTTGATAAAAGACTAT
1 GAGTTGATAAAAGACTAT
*
70533835 GAGTTGATAATAGACTAT
1 GAGTTGATAAAAGACTAT
70533853 CACCGGGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.22, T:0.31
Consensus pattern (18 bp):
GAGTTGATAAAAGACTAT
Found at i:70535939 original size:40 final size:40
Alignment explanation
Indices: 70535884--70536051 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
70535874 TGAATGATAC
* *
70535884 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
70535924 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
70535964 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
70536004 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
70536044 CC-GGCTAA
1 CCGGGCTAA
70536052 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:70543982 original size:39 final size:40
Alignment explanation
Indices: 70543894--70544138 Score: 266
Period size: 39 Copynumber: 6.2 Consensus size: 40
70543884 TGAATGATAC
* * *
70543894 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
70543934 CCGGGCTAAGACCCGAAGGCATTTGTG-GAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*** *
70543973 CCGGGCTAAGACCCGAAGGCATTT-TGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * *
70544012 CCGGACTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*** *
70544052 CCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
70544091 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
70544131 CC-GGCTAA
1 CCGGGCTAA
70544139 ATTCCGAAGA
Statistics
Matches: 170, Mismatches: 31, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
38 2 0.01
39 98 0.58
40 70 0.41
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:70544044 original size:79 final size:78
Alignment explanation
Indices: 70543894--70544138 Score: 332
Period size: 79 Copynumber: 3.1 Consensus size: 78
70543884 TGAATGATAC
* * * ** *
70543894 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTT-TGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCA-TTG
70543959 TG-GAGTTGTTATAT
64 TGCGAGTTGTTATAT
*
70543973 CCGGGCTAAGACCCGAAGGCATTTTGCAAGTTACCAAATCCGGACTAAGACCCGAAGGCATTCGT
1 CCGGGCTAAGACCCGAAGGCATTTTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCATT-GT
70544038 GCGAGTTGTTATAT
65 GCGAGTTGTTATAT
* *
70544052 CCGGGCTAAGACCCGAAGGCATTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATTGT
1 CCGGGCTAAGACCCGAAGGCATTTTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGC-ATTGT
** *
70544117 GCTTGTGGTTATAT
65 GCGAGTTGTTATAT
70544131 CC-GGCTAA
1 CCGGGCTAA
70544139 ATTCCGAAGA
Statistics
Matches: 150, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
77 2 0.01
78 39 0.26
79 106 0.71
80 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGACCCGAAGGCATTTTGCAAGTTACCAAATCCGGGCTAAGACCCGAAGGCATTGTG
CGAGTTGTTATAT
Found at i:70544107 original size:118 final size:118
Alignment explanation
Indices: 70543894--70544111 Score: 305
Period size: 118 Copynumber: 1.8 Consensus size: 118
70543884 TGAATGATAC
* * * *
70543894 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGACTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
* *** *
70543959 TGGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTTGCAAGTTACCAAAT
66 TGAAGTTACCAAATCCGGGCTAAGACCCGAAGGCATTTTGCAAGTTACCAAAT
*
70544012 CCGGACTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCA-TT
1 CCGGACTAAGACCCGAAGGCATTCATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTT
*
70544075 GTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
65 GTG-AAGTTACCAAATCCGGGCTAAGACCCGAAGGCA
70544112 ATTGTGCTTG
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
117 5 0.06
118 80 0.92
119 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (118 bp):
CCGGACTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
TGAAGTTACCAAATCCGGGCTAAGACCCGAAGGCATTTTGCAAGTTACCAAAT
Found at i:70548182 original size:94 final size:95
Alignment explanation
Indices: 70547976--70548236 Score: 259
Period size: 93 Copynumber: 2.7 Consensus size: 95
70547966 TATGTGTGCT
* * * * *
70547976 AGTGTAAGACATGTTTGGGACAT-GCATCAGCCAC-AGT--ATGAGAGCCAGTGTAAGAAATATC
1 AGTGTAAGACATGTCTGGGACATGGCATC-GACACTA-TAAACGAGAGCCAGTGTAAGACATGTC
* **
70548037 TAGACGTGCATCGGCCTCGAGATATTTAAGCC
64 TAGACATGCATCGGCCTCGAGATATACAAGCC
* *
70548069 AGTGTAAGACATGTCTGGGACAT-GCATCGGCA-T-TAAGACGAGAGCAAGTGTAAGACATGTCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGACACTATAA-ACGAGAGCCAGTGTAAGACATGTCT
* * *
70548131 GGGACATGCATCGGCCTCGCGATATACAAGCT
65 -AGACATGCATCGGCCTCGAGATATACAAGCC
* *
70548163 AGTGTAAGACCTG-CATGGGACATGGCATCGACACTAATAAATGAGAGCCAGTGTAAGACAATGT
1 AGTGTAAGACATGTC-TGGGACATGGCATCGACACT-ATAAACGAGAGCCAGTGTAAGAC-ATGT
70548227 CTAAGACATG
63 CT-AGACATG
70548237 GCGTCGGCAT
Statistics
Matches: 139, Mismatches: 18, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
90 1 0.01
92 3 0.02
93 49 0.35
94 45 0.32
95 8 0.06
96 1 0.01
97 17 0.12
98 15 0.11
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.22
Consensus pattern (95 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGACACTATAAACGAGAGCCAGTGTAAGACATGTCTA
GACATGCATCGGCCTCGAGATATACAAGCC
Found at i:70548186 original size:48 final size:47
Alignment explanation
Indices: 70547976--70548192 Score: 160
Period size: 46 Copynumber: 4.6 Consensus size: 47
70547966 TATGTGTGCT
* * * * * *
70547976 AGTGTAAGACATGTTTGGGACATGCATCAGCCACAG-TATGA-GAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGGATAT-ACAAGCA
* * * * ** *
70548022 AGTGTAAGAAATATCT-AGACGTGCATCGGCCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCG-GATATACAAGCA
* * *
70548069 AGTGTAAGACATGTCTGGGACATGCATCGGCAT--TA-AGACGAGAGCA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGGATATAC-A-AGCA
*
70548115 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCG-GATATACAAGCA
*
70548163 AGTGTAAGACCTG-CATGGGACATGGCATCG
1 AGTGTAAGACATGTC-TGGGACAT-GCATCG
70548193 ACACTAATAA
Statistics
Matches: 134, Mismatches: 25, Indels: 21
0.74 0.14 0.12
Matches are distributed among these distances:
44 1 0.01
45 15 0.11
46 49 0.37
47 22 0.16
48 36 0.27
49 8 0.06
50 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGGATATACAAGCA
Found at i:70550359 original size:49 final size:49
Alignment explanation
Indices: 70550232--70550489 Score: 389
Period size: 49 Copynumber: 5.3 Consensus size: 49
70550222 CCCTTCGGGA
* * * * * *
70550232 CTTATCACAT-T-TATACACTTCCACATCCATCACTTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70550279 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70550326 CTTATCACATATATTTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70550375 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70550424 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70550473 CTTATCACATATATATA
1 CTTATCACATATATATA
70550490 TATCTCATAC
Statistics
Matches: 195, Mismatches: 12, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
46 1 0.01
47 45 0.23
49 149 0.76
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70559182 original size:46 final size:46
Alignment explanation
Indices: 70559129--70559304 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 46
70559119 TATTTGGGCA
* *
70559129 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCG
* * *
70559175 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATG---C-AAGCG
* * *
70559222 TCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCG
* *
70559268 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70559305 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
42 4 0.04
43 4 0.04
45 3 0.03
46 60 0.56
47 27 0.25
48 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCG
Found at i:70559284 original size:93 final size:93
Alignment explanation
Indices: 70559125--70559295 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
70559115 GGGATATTTG
* * *
70559125 GGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAG
70559190 TTGAGTCCGAGTTTGTGAGATGTAACTA
66 TTGAGTCCGAGTTTGTGAGATGTAACTA
* * *
70559218 GGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC-GAACTCGTTGA
70559282 GTTGAGTCCGAGTT
65 GTTGAGTCCGAGTT
70559296 CGCTTATGGG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTTGTGAGATGTAACTA
Found at i:70559810 original size:207 final size:207
Alignment explanation
Indices: 70559455--70559868 Score: 792
Period size: 207 Copynumber: 2.0 Consensus size: 207
70559445 AGTGTTATGA
70559455 AATGGGTACTTTGAATAGCTATGTACTTAACCCTCGGGTTGAAAAATCGATATAACAACAATATG
1 AATGGGTACTTTGAATAGCTATGTACTTAACCCTCGGGTTGAAAAATCGATATAACAACAATATG
* *
70559520 GTAAGATGATAAATGAAAATGTGATATGAATGTCTTGGTGATGATTATGCAAATGATGTTTTATG
66 GTAAGATGATAAATGAAAATGTGATATGAATGTCTTAGTGATGATTAAGCAAATGATGTTTTATG
70559585 TTTGCTTATATGGTTATGTTACTTGCTATTTGCATGTGAACTTATTAAGCATTTATGCTTACTCC
131 TTTGCTTATATGGTTATGTTACTTGCTATTTGCATGTGAACTTATTAAGCATTTATGCTTACTCC
70559650 CTCCTTTTCATT
196 CTCCTTTTCATT
*
70559662 AATGGGTACTTTGAATAGGTATGTACTTAACCCTCGGGTTGAAAAATCGATATAACAACAATATG
1 AATGGGTACTTTGAATAGCTATGTACTTAACCCTCGGGTTGAAAAATCGATATAACAACAATATG
*
70559727 GTAAGATGATAAATGAAAATGTGATATGAATGTCTTATTGATGATTAAGCAAATGATGTTTTATG
66 GTAAGATGATAAATGAAAATGTGATATGAATGTCTTAGTGATGATTAAGCAAATGATGTTTTATG
70559792 TTTGCTTATATGGTTATGTTACTTGCTATTTGCATGTGAACTTATTAAGCATTTATGCTTACTCC
131 TTTGCTTATATGGTTATGTTACTTGCTATTTGCATGTGAACTTATTAAGCATTTATGCTTACTCC
70559857 CTCCTTTTCATT
196 CTCCTTTTCATT
70559869 CCTTGCAGTT
Statistics
Matches: 203, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
207 203 1.00
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.39
Consensus pattern (207 bp):
AATGGGTACTTTGAATAGCTATGTACTTAACCCTCGGGTTGAAAAATCGATATAACAACAATATG
GTAAGATGATAAATGAAAATGTGATATGAATGTCTTAGTGATGATTAAGCAAATGATGTTTTATG
TTTGCTTATATGGTTATGTTACTTGCTATTTGCATGTGAACTTATTAAGCATTTATGCTTACTCC
CTCCTTTTCATT
Found at i:70562488 original size:15 final size:15
Alignment explanation
Indices: 70562453--70562528 Score: 75
Period size: 15 Copynumber: 5.1 Consensus size: 15
70562443 CTTGGGTTTT
* *
70562453 TTTATCCTGGATCTC
1 TTTATTCTGGATTTC
70562468 TTTATTCTGGATTTC
1 TTTATTCTGGATTTC
* *
70562483 TTTATTCCGGGTTTC
1 TTTATTCTGGATTTC
*
70562498 TCTA-TCTTGGATTTC
1 TTTATTC-TGGATTTC
*
70562513 TTTATTC-GGTTTTC
1 TTTATTCTGGATTTC
70562527 TT
1 TT
70562529 GTTATCTTTG
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
14 10 0.20
15 38 0.76
16 2 0.04
ACGTcount: A:0.11, C:0.18, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTATTCTGGATTTC
Found at i:70564953 original size:46 final size:46
Alignment explanation
Indices: 70564900--70565075 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
70564890 TATTTGGGCA
70564900 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
70564946 TCCGAACTCGTTGATTTGAGTCCGAGTTCA-TGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* *
70564993 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGTA-CG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AGCG
* * * *
70565039 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70565076 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 65 0.60
47 30 0.28
48 3 0.03
50 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:70565058 original size:93 final size:93
Alignment explanation
Indices: 70564896--70565067 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
70564886 GGGATATTTG
* * *
70564896 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAT
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGCCCGAACTCGTTGAG
70564961 TTGAGTCCGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
* *
70564989 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGTA-CGCCCGAGCTCGTTGA
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AGCGCCCGAACTCGTTGA
*
70565053 GTTGAGTTCGAGTTC
65 GTTGAGTCCGAGTTC
70565068 GCTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCATGAGATGTAACTA
Found at i:70568454 original size:212 final size:212
Alignment explanation
Indices: 70568085--70568506 Score: 745
Period size: 212 Copynumber: 2.0 Consensus size: 212
70568075 CATTTAAACA
70568085 GAGGAAACACGATGAACCAAAACTACGCCAGAACGAGCTCAATGCCTCACCAAATCAACTTAAGA
1 GAGGAAACACGATGAACCAAAACTACGCCAGAACGAGCTCAATGCCTCACCAAATCAACTTAAGA
*
70568150 TAGGAGATAAAGTTTCATTAAATGCCACAGATCCTCACATTGACACTGCCAAACTGAAGGAAGAA
66 TAGGAGATAAAGTTTCATTAAATGCCACAGATCCTCACATTGACACTGCCAAACCGAAGGAAGAA
* * *
70568215 GTTCCTCTTACGGTACTTAGTATTTTCCCATTTGGTACAGTCGAGGTAAGTCATCCCAAATTCGG
131 ATTCCTCTTACGGTACTTAGCATTTTCCCATTTGGAACAGTCGAGGTAAGTCATCCCAAATTCGG
70568280 CACTTTTAAGGTAAATC
196 CACTTTTAAGGTAAATC
*
70568297 GAGGAAACACGATGAACCAAAACTACGCCAGAACGAGCTCAATGCCTCACCAAATCAACTTAAGG
1 GAGGAAACACGATGAACCAAAACTACGCCAGAACGAGCTCAATGCCTCACCAAATCAACTTAAGA
* * * * *
70568362 TAGGAGATAAAGTTTCATTAGATGCCACAGATTCTCACATTGACATTTCCAAACCGAATGAAGAA
66 TAGGAGATAAAGTTTCATTAAATGCCACAGATCCTCACATTGACACTGCCAAACCGAAGGAAGAA
*
70568427 ATTCCTCTTACGGTACTTAGCATTTTCCCATTTGGAATAGTCGAGGTAAGTCATCCCAAATTCGG
131 ATTCCTCTTACGGTACTTAGCATTTTCCCATTTGGAACAGTCGAGGTAAGTCATCCCAAATTCGG
70568492 CACTTTTAAGGTAAA
196 CACTTTTAAGGTAAA
70568507 CAATACCCGC
Statistics
Matches: 199, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
212 199 1.00
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (212 bp):
GAGGAAACACGATGAACCAAAACTACGCCAGAACGAGCTCAATGCCTCACCAAATCAACTTAAGA
TAGGAGATAAAGTTTCATTAAATGCCACAGATCCTCACATTGACACTGCCAAACCGAAGGAAGAA
ATTCCTCTTACGGTACTTAGCATTTTCCCATTTGGAACAGTCGAGGTAAGTCATCCCAAATTCGG
CACTTTTAAGGTAAATC
Found at i:70574262 original size:20 final size:20
Alignment explanation
Indices: 70574239--70574276 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70574229 CACATCCAAA
*
70574239 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
70574259 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
70574277 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:70583977 original size:51 final size:48
Alignment explanation
Indices: 70583922--70584064 Score: 161
Period size: 51 Copynumber: 3.0 Consensus size: 48
70583912 CTACCTTATA
* *
70583922 ACATGTAACACATCCATAATGAACTCAGACCTCTCAACGAGCTCAGATG
1 ACATGT-ACGCATCCATAATGAACTCAGACCACTCAACGAGCTCAGATG
* * *
70583971 TTACATGTATCGCATCCATTATGAGCTCGGACCACTCAACGAGCTCAGATG
1 --ACATGTA-CGCATCCATAATGAACTCAGACCACTCAACGAGCTCAGATG
*
70584022 -C---T-CGCATCCATAATGAACTCAGACCACTCAACAAGCTCAGATG
1 ACATGTACGCATCCATAATGAACTCAGACCACTCAACGAGCTCAGATG
70584065 CCTCATATAT
Statistics
Matches: 82, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
43 37 0.45
45 1 0.01
48 1 0.01
50 1 0.01
51 42 0.51
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (48 bp):
ACATGTACGCATCCATAATGAACTCAGACCACTCAACGAGCTCAGATG
Found at i:70584047 original size:43 final size:43
Alignment explanation
Indices: 70583980--70584065 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
70583970 GTTACATGTA
* * * *
70583980 TCGCATCCATTATGAGCTCGGACCACTCAACGAGCTCAGATGC
1 TCGCATCCATAATGAACTCAGACCACTCAACAAGCTCAGATGC
70584023 TCGCATCCATAATGAACTCAGACCACTCAACAAGCTCAGATGC
1 TCGCATCCATAATGAACTCAGACCACTCAACAAGCTCAGATGC
70584066 CTCATATATC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.30, C:0.33, G:0.17, T:0.20
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCAGACCACTCAACAAGCTCAGATGC
Found at i:70584093 original size:42 final size:43
Alignment explanation
Indices: 70583980--70584094 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 43
70583970 GTTACATGTA
* * * *
70583980 TCGCATCCATTATGAGCTCGGACCACTCAACGAGCTCAGATGC
1 TCGCATACATAATGAACTCGGACCACTCAACAAGCTCAGATGC
* *
70584023 TCGCATCCATAATGAACTCAGACCACTCAACAAGCTCAGATGC
1 TCGCATACATAATGAACTCGGACCACTCAACAAGCTCAGATGC
* * * *
70584066 -CTCATATATCATGAACTTGGACCACTCAA
1 TCGCATACATAATGAACTCGGACCACTCAA
70584095 AAAGTTCAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 23 0.37
43 39 0.63
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.22
Consensus pattern (43 bp):
TCGCATACATAATGAACTCGGACCACTCAACAAGCTCAGATGC
Found at i:70590564 original size:40 final size:40
Alignment explanation
Indices: 70590517--70590720 Score: 295
Period size: 40 Copynumber: 5.1 Consensus size: 40
70590507 CGGGATTGAA
* * * *
70590517 CCGGATATAGCT-ACTCGCTCGAATACCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
70590557 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
70590597 CCGGATATAGTATCTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
70590637 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
70590677 CCGGA-ACTAGTCACTAGCGCAAATGCCTTTGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
70590717 CCGG
1 CCGG
70590721 TTATCATCCA
Statistics
Matches: 152, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 2 0.01
40 150 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:70595467 original size:19 final size:20
Alignment explanation
Indices: 70595443--70595480 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
70595433 GGTACCACCA
70595443 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
70595462 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
70595481 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:70595775 original size:46 final size:46
Alignment explanation
Indices: 70595708--70595876 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
70595698 CTCCCCTTAG
* * *
70595708 TGAACTCGGACTCTACTCAACGAGCTCGGGC-GTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACAGTTC-CATCCATAAA
* * *
70595754 TGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCG---GAC-AGTTCCATCCATAAA
* * *
70595801 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTCCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCCATCCATAAA
70595847 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
70595877 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 1 0.01
46 55 0.53
47 28 0.27
48 1 0.01
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCCATCCATAAA
Found at i:70595820 original size:93 final size:93
Alignment explanation
Indices: 70595709--70595879 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
70595699 TCCCCTTAGT
* *
70595709 GAACTCGGACTCTACTCAACGAGCTCGGGC-GTTCGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACAGTTC-CATCCATAAATGAACTCGGACTCAACTCA
70595773 ACGAGTTCGAATGCCTAGTTACATCTCAC
65 ACGAGTTCGAATGCCTAGTTACATCTCAC
* * *
70595802 GAACTCGGACTCAACTCAACGAGTTCGGACATTTCCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACAGTTCCATCCATAAATGAACTCGGACTCAACTCAA
*
70595867 CGAGTTCGGATGC
66 CGAGTTCGAATGC
70595880 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 68 0.96
94 3 0.04
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACAGTTCCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATCTCAC
Found at i:70596333 original size:30 final size:30
Alignment explanation
Indices: 70596299--70596358 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
70596289 ATTTAATACG
70596299 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
70596329 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
70596359 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:70599165 original size:39 final size:40
Alignment explanation
Indices: 70599065--70599246 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
70599055 TCGAATGATG
* * *
70599065 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
70599105 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
70599145 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
70599183 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
70599224 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70599247 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:70599210 original size:78 final size:80
Alignment explanation
Indices: 70599065--70599246 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
70599055 TCGAATGATG
* * * *
70599065 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
70599130 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
70599145 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
70599207 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
70599224 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70599247 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:70603187 original size:39 final size:39
Alignment explanation
Indices: 70603144--70603240 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
70603134 CATATTCACT
* *
70603144 TTTAAACATATGTCACATTACAAATATAATCACATAACA
1 TTTAAACATATATCACAATACAAATATAATCACATAACA
** * *
70603183 TTTAAACATATATCACAATACTCATATGATCACATAATA
1 TTTAAACATATATCACAATACAAATATAATCACATAACA
* *
70603222 TTCAAGC--ATATCACAATAC
1 TTTAAACATATATCACAATAC
70603241 TCAAAAACAT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
37 12 0.24
39 38 0.76
ACGTcount: A:0.46, C:0.20, G:0.03, T:0.31
Consensus pattern (39 bp):
TTTAAACATATATCACAATACAAATATAATCACATAACA
Found at i:70607763 original size:37 final size:37
Alignment explanation
Indices: 70607657--70607765 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
70607647 AGCTCAGACG
* * *
70607657 AAATCTCCACACGAAGTTATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
70607694 AAATCTCTACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
70607731 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
70607766 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:70607981 original size:46 final size:46
Alignment explanation
Indices: 70607913--70608049 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
70607903 TATATATACA
* * * *
70607913 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
70607959 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
70608005 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
70608050 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:70608084 original size:47 final size:47
Alignment explanation
Indices: 70608023--70608311 Score: 443
Period size: 47 Copynumber: 6.1 Consensus size: 47
70608013 ACACATTTCG
* * * **
70608023 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
70608070 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
70608117 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
70608164 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
70608215 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
70608262 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
70608309 CAT
1 CAT
70608312 AAAATCCTAA
Statistics
Matches: 225, Mismatches: 13, Indels: 8
0.91 0.05 0.03
Matches are distributed among these distances:
47 181 0.80
51 44 0.20
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:70608212 original size:145 final size:141
Alignment explanation
Indices: 70608023--70608311 Score: 488
Period size: 145 Copynumber: 2.0 Consensus size: 141
70608013 ACACATTTCG
*
70608023 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
70608088 ATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTT
66 ATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTT
70608153 CACATTCATCA
131 CACATTCATCA
* *
70608164 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTAGCCATTCGGCCTTA-C-CAC--ATATATACAGGTTCACATTCATCACATTGGCCATTCGG
70608229 CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
62 CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
70608294 TGTTCACATTCATCA
127 TGTTCACATTCATCA
70608309 CAT
1 CAT
70608312 AAAATCCTAA
Statistics
Matches: 138, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
141 18 0.13
142 1 0.01
143 3 0.02
145 116 0.84
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (141 bp):
CATTAGCCATTCGGCCTTACCACATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTT
CACATTCATCA
Found at i:70608232 original size:98 final size:98
Alignment explanation
Indices: 70608023--70608289 Score: 425
Period size: 98 Copynumber: 2.8 Consensus size: 98
70608013 ACACATTTCG
* * * **
70608023 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
70608088 AT--CTC--ATATATGCATGTTCACATTCATCA
66 ATCACACATATATATACAGGTTCACATTCATCA
70608117 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
70608182 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACACATATATATACAGGTTCACATTCATCA
70608215 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
70608280 ATCACACATA
66 ATCACACATA
70608290 CGCATGTTCA
Statistics
Matches: 160, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
94 62 0.39
96 2 0.01
98 96 0.60
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATATATATACAGGTTCACATTCATCA
Found at i:70608312 original size:23 final size:23
Alignment explanation
Indices: 70608237--70608312 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 23
70608227 GGCCTTATCA
70608237 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
** * *
70608260 CACATTGGCCA--TTCGGCCTT-AT
1 CACATACG-CATGTTC-ACATTCAT
70608282 CACACATACGCATGTTCACATTCAT
1 --CACATACGCATGTTCACATTCAT
70608307 CACATA
1 CACATA
70608313 AAATCCTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 5 0.13
23 17 0.45
24 11 0.29
25 5 0.13
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (23 bp):
CACATACGCATGTTCACATTCAT
Found at i:70615560 original size:14 final size:15
Alignment explanation
Indices: 70615525--70615554 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70615515 AAACGAAATT
*
70615525 ATATTAAAAATTAAA
1 ATATAAAAAATTAAA
70615540 ATATAAAAAATTAAA
1 ATATAAAAAATTAAA
70615555 TTTAAATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
ATATAAAAAATTAAA
Found at i:70632230 original size:49 final size:49
Alignment explanation
Indices: 70632172--70632648 Score: 790
Period size: 49 Copynumber: 9.9 Consensus size: 49
70632162 GTATGAGATG
* *
70632172 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
* *
70632221 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAACGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
70632270 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
70632319 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
70632366 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
70632413 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
70632462 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
70632509 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
* * *
70632556 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
70632605 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
70632649 TATATGTGTG
Statistics
Matches: 410, Mismatches: 14, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 182 0.44
49 228 0.56
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTA
Found at i:70632463 original size:143 final size:143
Alignment explanation
Indices: 70632172--70632648 Score: 819
Period size: 143 Copynumber: 3.3 Consensus size: 143
70632162 GTATGAGATG
* * *
70632172 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--TATATATGTGATAAGG
* *
70632237 CCTAATGGCCAATGTGATGAACGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTG
64 CCTAATGGCCAATGTGATGAATGTGAAAGAG--TATATATGTGATAAGGCCTAATGGCCAATGTG
*
70632302 ATGAATGTGAAAGAGTA
127 ATGAATGTGAAAGTGTA
70632319 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
70632384 TAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
66 TAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
70632449 ATGTGAAAGTGTA
131 ATGTGAAAGTGTA
70632462 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
* *
70632527 TAATGGCCGATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 TAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
*
70632592 ATGTGAAGGTGTA
131 ATGTGAAAGTGTA
* *
70632605 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
70632649 TATATGTGTG
Statistics
Matches: 319, Mismatches: 11, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
143 230 0.72
145 45 0.14
147 44 0.14
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.29
Consensus pattern (143 bp):
TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
TAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
ATGTGAAAGTGTA
Found at i:70632697 original size:48 final size:48
Alignment explanation
Indices: 70632640--70632791 Score: 268
Period size: 48 Copynumber: 3.2 Consensus size: 48
70632630 CGATGTGATG
*
70632640 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
70632688 AATGTGAAATATATGTGTGATATGTATATGTTGTAAAGGCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
70632736 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
70632784 AATGTGAA
1 AATGTGAA
70632792 TGTTGTAACA
Statistics
Matches: 98, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 98 1.00
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.33
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Done.