Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 229 of 410
Found at i:70632885 original size:37 final size:37
Alignment explanation
Indices: 70632844--70632915 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
70632834 GTTCCAGGTG
70632844 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
70632881 AGACCCGATGACTACGTGTGGAGATTATGTCCGGG
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGG
70632916 AGATTATGTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
Found at i:70632919 original size:14 final size:14
Alignment explanation
Indices: 70632900--70632929 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
70632890 GACTACGTGT
70632900 GGAGATTATGTCCG
1 GGAGATTATGTCCG
70632914 GGAGATTATGTCCG
1 GGAGATTATGTCCG
70632928 GG
1 GG
70632930 TAAGACCCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.13, G:0.40, T:0.27
Consensus pattern (14 bp):
GGAGATTATGTCCG
Found at i:70632939 original size:51 final size:51
Alignment explanation
Indices: 70632863--70632966 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
70632853 GACTACGTGT
70632863 GGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
70632914 GGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
70632965 GG
1 GG
70632967 TAAGACTTCG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.23, C:0.17, G:0.35, T:0.25
Consensus pattern (51 bp):
GGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
Found at i:70637557 original size:29 final size:28
Alignment explanation
Indices: 70637523--70637625 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
70637513 TACTCAATCA
*
70637523 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
70637552 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
70637581 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
70637610 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
70637626 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:70645557 original size:29 final size:28
Alignment explanation
Indices: 70645523--70645625 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
70645513 TACTCAATCA
*
70645523 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
70645552 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
70645581 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
70645610 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
70645626 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:70647816 original size:27 final size:28
Alignment explanation
Indices: 70647778--70647847 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
70647768 AGAGTGAGTC
70647778 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
70647805 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
70647833 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70647848 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70649354 original size:40 final size:40
Alignment explanation
Indices: 70649309--70649473 Score: 167
Period size: 39 Copynumber: 4.2 Consensus size: 40
70649299 TCGGAAATAA
70649309 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
70649349 CCGGATAGAATAACTCGCACGAATGCCTTC-GGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
70649388 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
70649427 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
70649466 CCGGATAT
1 CCGGATAT
70649474 CATTCAATTC
Statistics
Matches: 103, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
38 16 0.16
39 44 0.43
40 43 0.42
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70650318 original size:17 final size:19
Alignment explanation
Indices: 70650295--70650340 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
70650285 AAGAAGCATG
70650295 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
70650313 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
70650331 AATCATGCTC
1 AATCATGCTC
70650341 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:70657433 original size:40 final size:39
Alignment explanation
Indices: 70657322--70657472 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
70657312 TTAATCACGT
* * *
70657322 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
70657362 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
70657402 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
70657442 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
70657473 CATTCAATTT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:70657456 original size:80 final size:79
Alignment explanation
Indices: 70657322--70657472 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
70657312 TTAATCACGT
*
70657322 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
70657387 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
70657402 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
70657465 CCGGATAT
64 CCGGATAT
70657473 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:70659553 original size:28 final size:27
Alignment explanation
Indices: 70659490--70659559 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
70659480 ATAGTGAGTC
70659490 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
70659517 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
70659545 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70659560 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:70664609 original size:42 final size:42
Alignment explanation
Indices: 70664500--70664654 Score: 186
Period size: 42 Copynumber: 3.7 Consensus size: 42
70664490 TACCACACCA
* * ** * *
70664500 ATGCCATATCCCAGATATGGTCTTATATGGGATCTCGTTTCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * *
70664542 ATGCCAATAGCCCAGCTATAGTCTTACACGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* *
70664585 TTTCCATATCCCAGATATGGTCTTACACGAAATCTCATAAT-G
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT-ATCG
70664627 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
70664655 ATAGTCTCGG
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
42 62 0.65
43 33 0.35
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:70669800 original size:6 final size:6
Alignment explanation
Indices: 70669789--70669822 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
70669779 AGGTTTCCAA
*
70669789 AAATGG AAATGG AAATGA AAATGG AAATGG AAAT
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAAT
70669823 TATCCATTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.56, C:0.00, G:0.26, T:0.18
Consensus pattern (6 bp):
AAATGG
Found at i:70669811 original size:18 final size:18
Alignment explanation
Indices: 70669788--70669822 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
70669778 TAGGTTTCCA
70669788 AAAATGGAAATGGAAATG
1 AAAATGGAAATGGAAATG
70669806 AAAATGGAAATGGAAAT
1 AAAATGGAAATGGAAAT
70669823 TATCCATTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.26, T:0.17
Consensus pattern (18 bp):
AAAATGGAAATGGAAATG
Found at i:70671687 original size:65 final size:65
Alignment explanation
Indices: 70671541--70671739 Score: 173
Period size: 65 Copynumber: 3.0 Consensus size: 65
70671531 ATGAAGTTTG
* * * * * *
70671541 CCAGGAGAATAAACATGACATCATATTGTGTAAAACCAAAGTTTGGCTATGACAACGTTTGAAGT
1 CCAGGACAATAAACAT---ATCATATTGTGTAAGACCATAGTTAGGTTATGACAACGTATGAAGT
70671606 CCA
63 CCA
* * * * *
70671609 CCAGGATAATAAACATATCATATTGTGTAAGACCATAGATGGGTTATGACAACATATGAAGTCCT
1 CCAGGACAATAAACATATCATATTGTGTAAGACCATAGTTAGGTTATGACAACGTATGAAGTCCA
* * * ** * * *
70671674 CTATGACAGTAAACATGGCATCATTCAGTGTAAGTCCGTAGTTAGGTTATGGCAACGTATGAAGT
1 CCAGGACAATAAACATATCAT-ATT--GTGTAAGACCATAGTTAGGTTATGACAACGTATGAAGT
70671739 C
63 C
70671740 TGCCATTGCG
Statistics
Matches: 107, Mismatches: 21, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
65 56 0.52
66 3 0.03
68 48 0.45
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.27
Consensus pattern (65 bp):
CCAGGACAATAAACATATCATATTGTGTAAGACCATAGTTAGGTTATGACAACGTATGAAGTCCA
Found at i:70674214 original size:24 final size:24
Alignment explanation
Indices: 70674142--70674219 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
70674132 GACTTACTGT
** *
70674142 AGCTCGTATGAGCTTACCGATATATC
1 AGCTCGTAAAAGCTTACCG-T-TTTC
* **
70674168 AGCTCGTAAGAGCTTACTATTTTC
1 AGCTCGTAAAAGCTTACCGTTTTC
*
70674192 AGCTTGTAAAAGCTTACCGTTTT-
1 AGCTCGTAAAAGCTTACCGTTTTC
70674215 AGCTC
1 AGCTC
70674220 AATAGAGCTT
Statistics
Matches: 43, Mismatches: 9, Indels: 3
0.78 0.16 0.05
Matches are distributed among these distances:
23 4 0.09
24 22 0.51
25 1 0.02
26 16 0.37
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.35
Consensus pattern (24 bp):
AGCTCGTAAAAGCTTACCGTTTTC
Found at i:70676321 original size:43 final size:42
Alignment explanation
Indices: 70676227--70676338 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 42
70676217 GATTTGAGAT
*
70676227 TTACATGTAAAACCATGTCTGGGACATCGACATCGTATTTGA
1 TTACATGTAAGACCATGTCTGGGACATCGACATCGTATTTGA
* * * * *
70676269 -TATCGTGTAAGACCCTGTTTGGGACAGT-GGCATGGATATTTGA
1 TTA-CATGTAAGACCATGTCTGGGACA-TCGACATCG-TATTTGA
*
70676312 TTACATGTAAGACCACGTCTGGGACAT
1 TTACATGTAAGACCATGTCTGGGACAT
70676339 TGCCATTGTA
Statistics
Matches: 56, Mismatches: 10, Indels: 8
0.76 0.14 0.11
Matches are distributed among these distances:
41 2 0.04
42 25 0.45
43 27 0.48
44 2 0.04
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGGACATCGACATCGTATTTGA
Found at i:70678427 original size:66 final size:65
Alignment explanation
Indices: 70678297--70678434 Score: 163
Period size: 66 Copynumber: 2.1 Consensus size: 65
70678287 CACAGTCTCA
* *
70678297 CACACGGGCGTGTGACTGGCTGTGTGGTACAAGTCAGTATACCCCCTATTTGGCACATGACCTAG
1 CACACGGGCGTGTGACTGGCTGTGTGGCACAAGTCAGTATACCCCATATTTGGCACATGACCTAG
* * * * * *
70678362 CACACGGGGGTGTGACTTGGTTGTGTTGCATAAGTCAGTATACCCTATAGGTTTGGCA-A-GGCC
1 CACACGGGCGTGTGAC-TGGCTGTGTGGCACAAGTCAGTATACCCCATA--TTTGGCACATGACC
70678425 TAG
63 TAG
70678428 CACACGG
1 CACACGG
70678435 CCTGGCATAC
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
65 15 0.24
66 39 0.63
67 1 0.02
68 7 0.11
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (65 bp):
CACACGGGCGTGTGACTGGCTGTGTGGCACAAGTCAGTATACCCCATATTTGGCACATGACCTAG
Found at i:70681578 original size:24 final size:24
Alignment explanation
Indices: 70681551--70681600 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
70681541 AAGAGTCGTA
* *
70681551 ATCAAGAAGTTCATAAAGAACCAT
1 ATCAAGAAGCTCACAAAGAACCAT
* *
70681575 ATCAGGAAGCTCACAAAGAGCCAT
1 ATCAAGAAGCTCACAAAGAACCAT
70681599 AT
1 AT
70681601 AACGGGAGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.46, C:0.20, G:0.16, T:0.18
Consensus pattern (24 bp):
ATCAAGAAGCTCACAAAGAACCAT
Found at i:70697291 original size:40 final size:38
Alignment explanation
Indices: 70697234--70697418 Score: 210
Period size: 40 Copynumber: 4.7 Consensus size: 38
70697224 TCGAATGATG
* * *
70697234 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGC-GAGTTACTA-A
70697274 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACT-AA
70697314 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAA
* *
70697353 TTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTA-A
* * *
70697393 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGACTAAGT-CCGAAGGCATTTG
70697419 AACAAGTAGC
Statistics
Matches: 131, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
39 36 0.27
40 86 0.66
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (38 bp):
TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:70697410 original size:79 final size:81
Alignment explanation
Indices: 70697234--70697418 Score: 247
Period size: 79 Copynumber: 2.3 Consensus size: 81
70697224 TCGAATGATG
*
70697234 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATATCCGGACTAAGACCCGAAGGCATT
70697298 TGTGCGAGTTACTAAA
66 TGTGCGAGTTACTAAA
* * * *
70697314 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACTATA-TCCGGACTAAGACCCGAAGGCA
70697375 TTTGTGCGAGTTACTATAA
64 TTTGTGCGAGTTACTA-AA
*
70697394 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70697419 AACAAGTAGC
Statistics
Matches: 93, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
78 1 0.01
79 47 0.51
80 37 0.40
81 8 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATATCCGGACTAAGACCCGAAGGCATT
TGTGCGAGTTACTAAA
Found at i:70697449 original size:79 final size:78
Alignment explanation
Indices: 70697234--70697451 Score: 232
Period size: 79 Copynumber: 2.7 Consensus size: 78
70697224 TCGAATGATG
70697234 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTAG-CTATATCCGG-CTAA-ATCCGAAGGCAT
70697297 TTGTGCGAGTTACTAAA
62 TTGTGCGAGTTACTAAA
* * **
70697314 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTA-CTA-ATTCCGGGCTAAGCCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAG-TAGCTATA-TCC-GGCTAAATCCGAAGGCAT
70697376 TTGTGCGAGTTACTATAA
62 TTGTGCGAGTTACTA-AA
* ** *
70697394 -CCGGGCTATGTCCCGAAGGCATTTGAACAAGTAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGCTAAA-TCCGAAGG
70697452 TACGTGATTT
Statistics
Matches: 115, Mismatches: 12, Indels: 23
0.77 0.08 0.15
Matches are distributed among these distances:
78 8 0.07
79 63 0.55
80 33 0.29
81 11 0.10
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGCTAAATCCGAAGGCATTTGT
GCGAGTTACTAAA
Found at i:70699283 original size:24 final size:24
Alignment explanation
Indices: 70699229--70699285 Score: 105
Period size: 24 Copynumber: 2.4 Consensus size: 24
70699219 ACAGCTCTAC
*
70699229 ATGAGCGTCCTGATATAGGCTCTT
1 ATGAGCTTCCTGATATAGGCTCTT
70699253 ATGAGCTTCCTGATATAGGCTCTT
1 ATGAGCTTCCTGATATAGGCTCTT
70699277 ATGAGCTTC
1 ATGAGCTTC
70699286 TTGACATGGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (24 bp):
ATGAGCTTCCTGATATAGGCTCTT
Found at i:70703537 original size:40 final size:41
Alignment explanation
Indices: 70703300--70703523 Score: 277
Period size: 40 Copynumber: 5.6 Consensus size: 41
70703290 TCGAATGATG
* *
70703300 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
70703340 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
70703380 TTCGGGCTAAGT-TCGAAGGCATTTGTGCGAGTTACTA-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70703419 TCCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70703458 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70703499 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70703524 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 73 0.45
40 81 0.49
41 10 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:70703546 original size:79 final size:78
Alignment explanation
Indices: 70703302--70703523 Score: 279
Period size: 79 Copynumber: 2.8 Consensus size: 78
70703292 GAATGATGTC
* * * *
70703302 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 CGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCGAAGGCATTTG
70703366 TGCGAGTTACTAATTT
64 TGCGAGTTACTAA-TT
* * *
70703382 CGGGCTAAGT-TCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAGTCCGAAGGCATTGGT
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCGAAGGCATTTGT
*
70703445 GCGAGTTACTAAATC
65 GCGAGTTACT-AATT
* *
70703460 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT-CCGAAGGCATTTG
70703524 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 11, Indels: 12
0.84 0.07 0.08
Matches are distributed among these distances:
78 35 0.28
79 60 0.48
80 30 0.24
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (78 bp):
CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATT
Found at i:70703554 original size:79 final size:79
Alignment explanation
Indices: 70703311--70703556 Score: 198
Period size: 79 Copynumber: 3.1 Consensus size: 79
70703301 CCGGGCTAAG
* * * * **
70703311 TCCCGAAGGC-TTTGTGCTAAGTGACT-ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTT
1 TCCCGAAGGCATTTGTGC-GAGTTACTAATA-CCGGGCTAAG-TCCGAAGGCATTGGAACGAGTT
* * * * *
70703374 ACTAATTTCGGGCTAAG
63 ACTAAATCCGAGTTAAA
* * **
70703391 T-TCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCGAAGGCATTGGTGCGAGTTACT
1 TCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGTCCGAAGGCATTGGAACGAGTTACT
* *
70703455 AAATCCGGGTTAAG
66 AAATCCGAGTTAAA
* *
70703469 TCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TA
1 TCCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAGT-CCGAAGGCATTGGAACGAGTTA
* *
70703532 GCTATATTC-AGTTAAA
64 -CTAAATCCGAGTTAAA
*
70703548 TTCCGAAGG
1 TCCCGAAGG
70703557 TACGTGATTC
Statistics
Matches: 140, Mismatches: 20, Indels: 13
0.81 0.12 0.08
Matches are distributed among these distances:
78 38 0.27
79 70 0.50
80 32 0.23
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (79 bp):
TCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGTCCGAAGGCATTGGAACGAGTTACT
AAATCCGAGTTAAA
Found at i:70707374 original size:46 final size:46
Alignment explanation
Indices: 70707227--70707400 Score: 135
Period size: 46 Copynumber: 3.7 Consensus size: 46
70707217 GTTATTGTGG
* **
70707227 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ATATTATGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGA-AGCAT-A-A
* * **
70707273 GCTTGTGGAAGACCATGTCTAGGACATGGCATCGGTATCG-AGACGAGT--
1 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAAG-C-A-TAA
*
70707321 GGTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAAGCATAA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAAGCATAA
* * *
70707367 GCTAGTGTAAGACATTTTTGGGACATGCATCGGC
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGC
70707401 TACGAGATGA
Statistics
Matches: 102, Mismatches: 15, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 51 0.50
47 29 0.28
48 16 0.16
49 1 0.01
50 1 0.01
51 1 0.01
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAAGCATAA
Found at i:70711236 original size:40 final size:40
Alignment explanation
Indices: 70711178--70711355 Score: 254
Period size: 40 Copynumber: 4.5 Consensus size: 40
70711168 CGGATGATAA
70711178 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
* *
70711218 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
* *
70711258 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
*
70711298 CCGGGCTAAGTCCCAAAGGCATTTG-AGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTA-CGAGTTA-CTATAT
* *
70711338 CC-GGCTAAATCCAGAAGG
1 CCGGGCTAAGTCCCGAAGG
70711356 TACTTGGTTT
Statistics
Matches: 126, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 15 0.12
40 111 0.88
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
Found at i:70715418 original size:40 final size:40
Alignment explanation
Indices: 70715374--70715551 Score: 268
Period size: 40 Copynumber: 4.5 Consensus size: 40
70715364 GCCACTAGCT
* * *
70715374 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
70715414 CAAATGCCTTCGGGACTTGGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
70715453 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* * *
70715493 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
70715533 CGAATGCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
70715552 CGCCTTCGGG
Statistics
Matches: 128, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
39 36 0.28
40 92 0.72
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
Found at i:70715473 original size:79 final size:80
Alignment explanation
Indices: 70715374--70715551 Score: 268
Period size: 79 Copynumber: 2.2 Consensus size: 80
70715364 GCCACTAGCT
* * * * *
70715374 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTGGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
70715439 -TATAATAACTCGCA
66 ATATAATAACTCGCA
*
70715453 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
70715518 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
*
70715533 CGAATGCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
70715552 CGCCTTCGGG
Statistics
Matches: 89, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 59 0.66
80 30 0.34
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:70715558 original size:15 final size:15
Alignment explanation
Indices: 70715538--70715566 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
70715528 TCGCACGAAT
70715538 GCCTTCGGGACTTAC
1 GCCTTCGGGACTTAC
70715553 GCCTTCGGGACTTA
1 GCCTTCGGGACTTA
70715567 GCCCGGATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.31, G:0.28, T:0.28
Consensus pattern (15 bp):
GCCTTCGGGACTTAC
Found at i:70715580 original size:55 final size:55
Alignment explanation
Indices: 70715496--70715606 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
70715486 GCTCGCACAA
70715496 ACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGACTT
1 ACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGACTT
70715551 ACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGACTT
1 ACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGACTT
70715606 A
1 A
70715607 GCCCGGAATT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (55 bp):
ACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGACTT
Found at i:70715634 original size:40 final size:40
Alignment explanation
Indices: 70715553--70715648 Score: 99
Period size: 40 Copynumber: 2.4 Consensus size: 40
70715543 CGGGACTTAC
* * *
70715553 GCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGCAGCTAGCACAAAT
*
70715593 GCCTTCGGGACTTAGCCCGGA-ATTAGCCA-CTAGCTCAAAT
1 GCCTTCGGGACTTAGCCCGGATA-TAG-CAGCTAGCACAAAT
*
70715633 G-CTCTCAGGACTTAGC
1 GCCT-TCGGGACTTAGC
70715649 TCGGTTATCA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
39 3 0.06
40 44 0.92
41 1 0.02
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGCAGCTAGCACAAAT
Found at i:70715634 original size:95 final size:95
Alignment explanation
Indices: 70715458--70715634 Score: 259
Period size: 95 Copynumber: 1.9 Consensus size: 95
70715448 TCGCACAAAT
70715458 GCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGGATATA
* * *
70715523 GTAGCTCGCACGAATGCCTTCGGGACTTAC
66 GCAGCTAGCACAAATGCCTTCGGGACTTAC
* * *
70715553 GCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGACTTAGCCCGGA-ATT
1 GCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGGATA-T
*
70715617 AGCCA-CTAGCTCAAATGC
65 AG-CAGCTAGCACAAATGC
70715635 TCTCAGGACT
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
94 1 0.01
95 71 0.97
96 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (95 bp):
GCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGGATATA
GCAGCTAGCACAAATGCCTTCGGGACTTAC
Found at i:70734342 original size:40 final size:39
Alignment explanation
Indices: 70734298--70734519 Score: 230
Period size: 40 Copynumber: 5.6 Consensus size: 39
70734288 GCCACTAGCT
*
70734298 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * *
70734338 CAAATGCCTTTGGGACTTGGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* * * * *
70734377 GAAATGCTTTCGGGACTTAGCCCGGATATAATAGCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
70734417 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
** * ** * *
70734457 TGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
70734497 CAAATG-CTCTCGGGACTTAGCCC
1 CAAATGCCT-TCGGGACTTAGCCC
70734520 AGTTATCATC
Statistics
Matches: 153, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
39 36 0.24
40 117 0.76
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:70734432 original size:79 final size:81
Alignment explanation
Indices: 70734299--70734482 Score: 248
Period size: 79 Copynumber: 2.3 Consensus size: 81
70734289 CCACTAGCTC
* * ** * * *
70734299 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTTGGGACTTGGCCCGG-
1 AAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAACGCCTTCGGGACTTAGCCCGGA
70734363 TATAATAACTCGCA-G
66 TATAATAACTCGCATG
* *
70734378 AAATGCTTTCGGGACTTAGCCCGGATATAATAGCTCACACAAACGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAACGCCTTCGGGACTTAGCCCGGA
* *
70734443 TATAGTAGCTCGCATG
66 TATAATAACTCGCATG
70734459 -AATGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGA
70734483 ATTAGCCACT
Statistics
Matches: 91, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
79 55 0.60
80 35 0.38
81 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (81 bp):
AAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAACGCCTTCGGGACTTAGCCCGGA
TATAATAACTCGCATG
Found at i:70739626 original size:40 final size:40
Alignment explanation
Indices: 70739571--70739748 Score: 297
Period size: 40 Copynumber: 4.5 Consensus size: 40
70739561 CGGATGATAA
70739571 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
70739611 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
70739651 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
70739691 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
70739731 CC-GGCTAAATCCTGAAGG
1 CCGGGCTAAGTCCCGAAGG
70739749 TACTTGGTTT
Statistics
Matches: 132, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 16 0.12
40 116 0.88
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:70742935 original size:34 final size:34
Alignment explanation
Indices: 70742896--70742964 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
70742886 TTCCTCTGAG
*
70742896 ATGTTTTCCTTTTTAGTTATGAACTAAATCCCCT
1 ATGTTTTCATTTTTAGTTATGAACTAAATCCCCT
70742930 ATGTTTTCATTTTTAGTTATGAACTAAATCCCCT
1 ATGTTTTCATTTTTAGTTATGAACTAAATCCCCT
70742964 A
1 A
70742965 AATACCTAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.26, C:0.19, G:0.09, T:0.46
Consensus pattern (34 bp):
ATGTTTTCATTTTTAGTTATGAACTAAATCCCCT
Found at i:70752851 original size:46 final size:45
Alignment explanation
Indices: 70752703--70752838 Score: 132
Period size: 46 Copynumber: 3.0 Consensus size: 45
70752693 TGTAACCCGC
* * * *
70752703 CCATAAGTGAACTCGGACTCAATTCAACAAGCTC-GAATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCCA--T
* *** * *
70752749 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCCCAT
70752796 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCCCA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCCA
70752839 AATATCCTAG
Statistics
Matches: 71, Mismatches: 16, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
44 5 0.07
46 32 0.45
47 28 0.39
48 2 0.03
49 4 0.06
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCCAT
Found at i:70755249 original size:15 final size:15
Alignment explanation
Indices: 70755223--70755278 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
70755213 CAAGGAAACC
*
70755223 GAATAAAGAAATCCA
1 GAATAGAGAAATCCA
70755238 -AGATAGAGAAATCCA
1 GA-ATAGAGAAATCCA
*
70755253 GAATAAAGAAATCCA
1 GAATAGAGAAATCCA
70755268 GAATAGAGAAA
1 GAATAGAGAAA
70755279 CCCAAGATAC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
14 1 0.03
15 34 0.94
16 1 0.03
ACGTcount: A:0.59, C:0.11, G:0.18, T:0.12
Consensus pattern (15 bp):
GAATAGAGAAATCCA
Found at i:70758619 original size:46 final size:46
Alignment explanation
Indices: 70758569--70758697 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
70758559 TGGTTGAGCA
*
70758569 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
70758615 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
70758661 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70758698 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:70766144 original size:46 final size:46
Alignment explanation
Indices: 70766094--70766222 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
70766084 TGGTTGAGCA
*
70766094 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
70766140 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
70766186 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70766223 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:70768552 original size:93 final size:93
Alignment explanation
Indices: 70768425--70768595 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
70768415 CCCGTAAGTG
* *
70768425 AACTCGGACTCAACTCAAAGAGCTTGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAAAGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
70768490 GAGCTCGGATGCCTAGTTACATCTCTCA
66 GAGCTCGGATGCCTAGTTACATCTCTCA
*
70768518 AACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCGGACTCAACTCAAAGAGCTT-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
70768582 CGAGTTCGGATGCC
65 CGAGCTCGGATGCC
70768596 CAAATATCCT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAAAGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:70768586 original size:46 final size:46
Alignment explanation
Indices: 70768419--70768591 Score: 187
Period size: 46 Copynumber: 3.7 Consensus size: 46
70768409 AACCCGCCCG
* * *
70768419 TAAGTGAACTCGGACTCAACTCAAAGAGCTT-GGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCA
* *
70768465 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACATCTC-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATC-CA
*
70768515 TCA---AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
70768558 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70768592 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 9, Indels: 24
0.76 0.06 0.17
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
44 1 0.01
45 1 0.01
46 57 0.54
47 27 0.25
49 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:70780164 original size:19 final size:20
Alignment explanation
Indices: 70780122--70780173 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 20
70780112 TTTGATAATT
70780122 CTTAATTA-TTTTTATTTTA
1 CTTAATTATTTTTTATTTTA
*
70780141 ATTAATTATTTTTTA-TTTA
1 CTTAATTATTTTTTATTTTA
*
70780160 CTTAA-AATTTTTTA
1 CTTAATTATTTTTTA
70780174 AATACCTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 8 0.28
19 15 0.52
20 6 0.21
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (20 bp):
CTTAATTATTTTTTATTTTA
Found at i:70783609 original size:40 final size:40
Alignment explanation
Indices: 70783565--70783655 Score: 128
Period size: 40 Copynumber: 2.3 Consensus size: 40
70783555 GTGCTAAGTG
* * * *
70783565 ACTAAATCCGGACTAAGATCCGACGGCATACGTGCGAGTT
1 ACTAAATCCGGACTAAGATCCGAAGGCATACGAGCAAGCT
* *
70783605 ACTAAATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCT
1 ACTAAATCCGGACTAAGATCCGAAGGCATACGAGCAAGCT
70783645 ACTAAATCCGG
1 ACTAAATCCGG
70783656 GTTGAGTCCC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.32, C:0.25, G:0.23, T:0.20
Consensus pattern (40 bp):
ACTAAATCCGGACTAAGATCCGAAGGCATACGAGCAAGCT
Found at i:70785436 original size:26 final size:26
Alignment explanation
Indices: 70785325--70785468 Score: 171
Period size: 27 Copynumber: 5.4 Consensus size: 26
70785315 GGGCATAATC
** * *
70785325 GTCATTTTACTATACAGGGATATTATG
1 GTCATTTTACCCTACAGGG-CATTACG
*
70785352 GTCATTTTATCCTACAAGGGCATTACG
1 GTCATTTTACCCTAC-AGGGCATTACG
* * * *
70785379 GTCTTTTTACCCTATATGGGTATTACT
1 GTCATTTTACCCTACA-GGGCATTACG
*
70785406 ATCATTTTACCCTACAGGGCATTACG
1 GTCATTTTACCCTACAGGGCATTACG
70785432 GTCATTTTACCCTACAGGGCATTACG
1 GTCATTTTACCCTACAGGGCATTACG
70785458 GTCATTTTACC
1 GTCATTTTACC
70785469 TATTTTGGGG
Statistics
Matches: 99, Mismatches: 16, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
26 45 0.45
27 50 0.51
28 4 0.04
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.38
Consensus pattern (26 bp):
GTCATTTTACCCTACAGGGCATTACG
Found at i:70790813 original size:48 final size:47
Alignment explanation
Indices: 70790591--70790834 Score: 178
Period size: 48 Copynumber: 5.2 Consensus size: 47
70790581 ATGATTTTAT
*
70790591 ATGGGACCAC-TATTGATGCCAATGCCATGTCCCAGACATGGTCTTAC
1 ATGGGATCACATATTGATG-CAATGCCATGTCCCAGACATGGTCTTAC
* **
70790638 ATGGGATCACACA-T-AT-CGAA-GCCAATAACCCAG-CTATGGTCTTAC
1 ATGGGATCACATATTGATGC-AATGCC-ATGTCCCAGAC-ATGGTCTTAC
*** * * * * *
70790683 ACAATGTTCTCAAATCGATGCAATGCCATGTCCCAGACACGGTCTTAC
1 A-TGGGATCACATATTGATGCAATGCCATGTCCCAGACATGGTCTTAC
** *
70790731 ATGGGATCACATAAAGGTGCCAATTG-CATGTCCCAGACATGGTCTTAC
1 ATGGGATCACATATTGATG-CAA-TGCCATGTCCCAGACATGGTCTTAC
* * * * *
70790779 ATGGGATCACATATTGATGCTGATGCCATATCCCAAATATGGTCTTAT
1 ATGGGATCACATATTGATGC-AATGCCATGTCCCAGACATGGTCTTAC
*
70790827 ACGGGATC
1 ATGGGATC
70790835 TCATCAACCC
Statistics
Matches: 150, Mismatches: 33, Indels: 27
0.71 0.16 0.13
Matches are distributed among these distances:
44 5 0.03
45 20 0.13
46 8 0.05
47 22 0.15
48 88 0.59
49 7 0.05
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (47 bp):
ATGGGATCACATATTGATGCAATGCCATGTCCCAGACATGGTCTTAC
Found at i:70796471 original size:40 final size:41
Alignment explanation
Indices: 70796413--70796597 Score: 159
Period size: 40 Copynumber: 4.6 Consensus size: 41
70796403 GGATATAGCG
* * *
70796413 ACTCGCTCG-ATTGTCTTCGGGAGATT-GCCCGG-TTATAGTG
1 ACTCGCACGAATTGCCTTCGGGA-ATTAGCCCGGATT-TAGTA
* *
70796453 ATTCGTAC-AATTGCCTTCGGGAATTAGCCCGGATTTAGTA
1 ACTCGCACGAATTGCCTTCGGGAATTAGCCCGGATTTAGTA
* * * *
70796493 ACTCGCACGAA-TGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCACGAATTGCCTTCGGGAATTAGCCCGGATTTAGTA
* * * * * *
70796533 ACTCGCAC-AAATGCCTTCAGGACTTAACCCGGTTTTGGTA
1 ACTCGCACGAATTGCCTTCGGGAATTAGCCCGGATTTAGTA
*
70796573 ACTCGCAC-AAATGCCTTCGGGAATT
1 ACTCGCACGAATTGCCTTCGGGAATT
70796598 GACCATGATT
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 5 0.04
40 117 0.93
41 4 0.03
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (41 bp):
ACTCGCACGAATTGCCTTCGGGAATTAGCCCGGATTTAGTA
Found at i:70796525 original size:80 final size:80
Alignment explanation
Indices: 70796440--70796594 Score: 202
Period size: 80 Copynumber: 1.9 Consensus size: 80
70796430 CGGGAGATTG
* * * * * * *
70796440 CCCGGTTATAGTGATTCGTACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAAT
1 CCCGGTTATAGTAACTCGCACAAATGCCTTCAGGAATTAACCCGGATTTAGTAACTCGCACAAAT
70796505 GCCTTCGGGACTTAA
66 GCCTTCGGGACTTAA
* * * * *
70796520 CCCGGTTTTGGTAACTCGCACAAATGCCTTCAGGACTTAACCCGGTTTTGGTAACTCGCACAAAT
1 CCCGGTTATAGTAACTCGCACAAATGCCTTCAGGAATTAACCCGGATTTAGTAACTCGCACAAAT
70796585 GCCTTCGGGA
66 GCCTTCGGGA
70796595 ATTGACCATG
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 63 1.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (80 bp):
CCCGGTTATAGTAACTCGCACAAATGCCTTCAGGAATTAACCCGGATTTAGTAACTCGCACAAAT
GCCTTCGGGACTTAA
Found at i:70798387 original size:40 final size:39
Alignment explanation
Indices: 70798321--70798471 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
70798311 AAATTGAATG
* * *
70798321 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
70798360 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
70798400 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
70798440 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
70798472 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:70798485 original size:40 final size:39
Alignment explanation
Indices: 70798358--70798487 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
70798348 ATGCTGGAAA
* *
70798358 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
70798398 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
70798438 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
70798478 TTATATCCGG
1 TTATATCCGG
70798488 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:70806384 original size:40 final size:40
Alignment explanation
Indices: 70806318--70806468 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
70806308 AAATTGAATG
* * *
70806318 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
70806357 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
70806397 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
70806437 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
70806469 ACGGTTATAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:70819326 original size:40 final size:39
Alignment explanation
Indices: 70819260--70819410 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
70819250 AAATTGAATG
* * *
70819260 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
70819299 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
70819339 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
70819379 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
70819411 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:70819424 original size:40 final size:39
Alignment explanation
Indices: 70819297--70819426 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
70819287 ATGCTGGAAA
* *
70819297 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
70819337 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
70819377 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
70819417 TTATATCCGG
1 TTATATCCGG
70819427 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:70833315 original size:14 final size:16
Alignment explanation
Indices: 70833283--70833319 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
70833273 ATTTACATAA
*
70833283 CATATATCACCTATTT
1 CATATATCACCTATGT
70833299 CATATATCA-CT-TGT
1 CATATATCACCTATGT
70833313 CATATAT
1 CATATAT
70833320 TATCATTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 9 0.45
15 2 0.10
16 9 0.45
ACGTcount: A:0.32, C:0.22, G:0.03, T:0.43
Consensus pattern (16 bp):
CATATATCACCTATGT
Found at i:70840468 original size:28 final size:28
Alignment explanation
Indices: 70840436--70840512 Score: 136
Period size: 28 Copynumber: 2.8 Consensus size: 28
70840426 TACTCAATGC
*
70840436 CTCGCACACTAAGTGCCATACTTGATAT
1 CTCGCACACTAAGTGCCATACTCGATAT
*
70840464 CTCGCACACTAAGTGCCATGCTCGATAT
1 CTCGCACACTAAGTGCCATACTCGATAT
70840492 CTCGCACACTAAGTGCCATAC
1 CTCGCACACTAAGTGCCATAC
70840513 ATAGCCGAAG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (28 bp):
CTCGCACACTAAGTGCCATACTCGATAT
Found at i:70840580 original size:40 final size:40
Alignment explanation
Indices: 70840493--70840589 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
70840483 GCTCGATATC
70840493 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
* * * * * **
70840533 TCACACACCAAGAGCCATATATAGCCGAAGCTATGTCGTA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
70840573 TCGCACACTAAGTGCCA
1 TCGCACACTAAGTGCCA
70840590 CAAATAACTG
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.20
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
Found at i:70841749 original size:25 final size:25
Alignment explanation
Indices: 70841712--70841761 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
70841702 CAAAAATTGT
70841712 AAATTTCCCATTTTTTAGCCGAACC
1 AAATTTCCCATTTTTTAGCCGAACC
* * *
70841737 AAATTTTCTATTTTTTGGCCGAACC
1 AAATTTCCCATTTTTTAGCCGAACC
70841762 CCCATTATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.10, T:0.40
Consensus pattern (25 bp):
AAATTTCCCATTTTTTAGCCGAACC
Found at i:70878840 original size:123 final size:123
Alignment explanation
Indices: 70878621--70878959 Score: 579
Period size: 123 Copynumber: 2.8 Consensus size: 123
70878611 GAATTATGTG
*
70878621 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* * *
70878686 GCTAAGTCCCGAAGGCAGTTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAAAGA
70878744 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
70878809 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAAAGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAAAGA
* * * * *
70878867 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
70878932 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
70878960 AATTATATCC
Statistics
Matches: 205, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 205 1.00
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAAAGA
Found at i:70878983 original size:40 final size:40
Alignment explanation
Indices: 70878928--70879169 Score: 297
Period size: 40 Copynumber: 6.0 Consensus size: 40
70878918 TGAATGATAC
* * * * **
70878928 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
70878968 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
70879008 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
70879048 CCGAGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
70879088 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
70879128 CCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
70879168 CC
1 CC
70879170 AGTTGTATTC
Statistics
Matches: 179, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 177 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:70881976 original size:40 final size:40
Alignment explanation
Indices: 70881855--70881977 Score: 126
Period size: 40 Copynumber: 3.1 Consensus size: 40
70881845 TTGAATGATA
* * * ***
70881855 CCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATAT
* * *
70881894 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATAT
70881934 CCGGGCTAAGACCCGAAGGC-ATTCGTGC-ACGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTA-GTGGTTATAT
70881974 CCGG
1 CCGG
70881978 TTGTATTCCG
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
39 13 0.19
40 56 0.81
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATAT
Found at i:70893394 original size:80 final size:80
Alignment explanation
Indices: 70893310--70893458 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
70893300 TATGGTAACC
* * * *
70893310 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
70893374 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
70893390 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
70893455 CCGG
66 CCGG
70893459 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:70893400 original size:40 final size:38
Alignment explanation
Indices: 70893351--70893458 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
70893341 ATCACGATTT
*
70893351 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
70893391 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
70893431 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
70893459 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:70898894 original size:29 final size:29
Alignment explanation
Indices: 70898862--70898968 Score: 108
Period size: 29 Copynumber: 3.7 Consensus size: 29
70898852 ATACCCTCCG
** *
70898862 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACATAGTGCCATATTTTTCC
* *
70898891 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACATAGTGCCATATTTTTCC
* * *
70898920 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACATAGTGCCATATTTTTCC
* *
70898949 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACATAGTGCCA
70898969 ATCTCATCAC
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACATAGTGCCATATTTTTCC
Found at i:70908837 original size:46 final size:45
Alignment explanation
Indices: 70908787--70908959 Score: 170
Period size: 46 Copynumber: 3.8 Consensus size: 45
70908777 TGGTTGAGCA
*
70908787 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCAAACG
* * * *
70908833 TCCGAACTTGTTGAGTTGAGTCCGAGTTCA-TGA-GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAA--A--CG
* * *
70908880 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATTGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-TGATGCAAACG
* * * *
70908926 CCCGAGCTTGTTGAGTTGAGTCCGATTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70908960 GGGTCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 29 0.28
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAACG
Found at i:70908901 original size:47 final size:46
Alignment explanation
Indices: 70908784--70908910 Score: 161
Period size: 47 Copynumber: 2.7 Consensus size: 46
70908774 GGATGGTTGA
* *
70908784 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA-GGATGCAAAG
* *
70908832 G--TCCGAACTTGTTGAGTTGAGTCCGAGTTCATGA-GATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGGATGCAA--AG
70908877 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAT
70908911 TTATTGATAC
Statistics
Matches: 70, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
43 6 0.09
45 4 0.06
46 29 0.41
47 30 0.43
48 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGGATGCAAAG
Found at i:70908943 original size:93 final size:93
Alignment explanation
Indices: 70908784--70908955 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
70908774 GGATGGTTGA
* * *
70908784 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTTGTTGAGT
70908849 TGAGTCCGAGTTCATGAGATGTAACTAG
66 TGAGTCCGAGTTCATGAGATGTAACTAG
* * * *
70908877 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATTGATACGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTTGTTGAGT
*
70908942 TGAGTCCGATTTCA
66 TGAGTCCGAGTTCA
70908956 CTTAGGGTCG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTTGTTGAGT
TGAGTCCGAGTTCATGAGATGTAACTAG
Found at i:70911775 original size:27 final size:26
Alignment explanation
Indices: 70911737--70911835 Score: 126
Period size: 27 Copynumber: 3.7 Consensus size: 26
70911727 CGTGCCTAGG
* *
70911737 CCACAATTATCTGATCTGGTGGTTCTA
1 CCAC-ATTATCTGTTCTGGTGGCTCTA
*
70911764 CCACATATATCTGTTCTGGTGGCTCTG
1 CCACAT-TATCTGTTCTGGTGGCTCTA
*
70911791 CCACGATTATCTGTTCTGGTGACTCTA
1 CCAC-ATTATCTGTTCTGGTGGCTCTA
*
70911818 CCACATTATCTATTCTGG
1 CCACATTATCTGTTCTGG
70911836 CAGCCATGCT
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
26 15 0.23
27 47 0.73
28 2 0.03
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.37
Consensus pattern (26 bp):
CCACATTATCTGTTCTGGTGGCTCTA
Found at i:70918072 original size:24 final size:24
Alignment explanation
Indices: 70918040--70918116 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
70918030 AAGTCTGTCA
70918040 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
70918064 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* * *
70918088 GGAGCGGATTTAGGAGTTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
70918112 GGAGA
1 GGAGA
70918117 ACAGTGTTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.31, C:0.04, G:0.43, T:0.22
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:70919576 original size:27 final size:27
Alignment explanation
Indices: 70919527--70919637 Score: 154
Period size: 27 Copynumber: 4.1 Consensus size: 27
70919517 AGGGAGCGTC
* * *
70919527 CTGGTGCCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGTT
*
70919554 CTGATGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGTT
70919581 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
*
70919608 CTGGTGACTCTGCCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
70919634 CTGG
1 CTGG
70919638 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 16 0.21
27 58 0.76
28 2 0.03
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGTT
Found at i:70929390 original size:93 final size:93
Alignment explanation
Indices: 70929278--70929448 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
70929268 GCCCATAAGT
*
70929278 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
70929343 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
70929371 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
70929436 CGAGTTCGGATGC
66 CGAGTTCGGATGC
70929449 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70929445 original size:46 final size:46
Alignment explanation
Indices: 70929270--70929445 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
70929260 TGTAACCCGC
* *
70929270 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
70929316 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
70929366 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
70929409 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70929446 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 28 0.25
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:70931394 original size:29 final size:29
Alignment explanation
Indices: 70931355--70931442 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
70931345 CAAAGATAAC
*
70931355 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
70931384 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
70931413 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
70931443 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:70931413 original size:15 final size:15
Alignment explanation
Indices: 70931355--70931433 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
70931345 CAAAGATAAC
*
70931355 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
70931369 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
70931384 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
70931398 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
70931413 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
70931428 AAGAAA
1 AAGAAA
70931434 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:70931442 original size:15 final size:15
Alignment explanation
Indices: 70931366--70931442 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
70931356 AGAAAACCGA
70931366 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
70931381 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
70931395 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
70931409 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
70931425 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
70931440 ATA
1 ATA
70931443 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:70934503 original size:93 final size:93
Alignment explanation
Indices: 70934391--70934561 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
70934381 GCCCATAAGT
* *
70934391 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70934456 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
70934484 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70934549 CGAGTTCGGATGC
66 CGAGTTCGGATGC
70934562 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70934558 original size:46 final size:46
Alignment explanation
Indices: 70934383--70934558 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
70934373 TGTAACCCGC
* * *
70934383 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
70934429 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
70934479 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
70934522 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70934559 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:70943305 original size:29 final size:29
Alignment explanation
Indices: 70943266--70943345 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
70943256 CTTAATAATC
*
70943266 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
70943296 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
70943325 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
70943346 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:70944899 original size:43 final size:43
Alignment explanation
Indices: 70944851--70944952 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
70944841 TCCCGGACGT
* **
70944851 GGTCTTACATGTAATTCA-ATATCGATGCCTCTATCCCAGACAG
1 GGTCTTACATGTAAATCAGATAT-GATGCCGATATCCCAGACAG
* * *
70944894 GGTCTTACACG-AAATCAGATATGATGCCGATATTCCAGACAT
1 GGTCTTACATGTAAATCAGATATGATGCCGATATCCCAGACAG
*
70944936 GGTCTTATATGTAAATC
1 GGTCTTACATGTAAATC
70944953 TCAATCGAGG
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
42 30 0.61
43 19 0.39
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (43 bp):
GGTCTTACATGTAAATCAGATATGATGCCGATATCCCAGACAG
Found at i:70953106 original size:40 final size:40
Alignment explanation
Indices: 70953040--70953206 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
70953030 AAATTGAATG
* * *
70953040 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
70953079 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
70953119 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
70953159 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
70953199 ATATCCGG
1 ATATCCGG
70953207 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:70961188 original size:40 final size:40
Alignment explanation
Indices: 70961027--70961190 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
70961017 AAATTGAATG
* * * *
70961027 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGA--AATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGATT
* * * **
70961065 ATATCCGGGTTAAGA-CCGAAGGCA-ATGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
70961103 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
70961143 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGATT
70961183 ATATCCGG
1 ATATCCGG
70961191 TTATATTCCG
Statistics
Matches: 101, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
36 1 0.01
37 4 0.04
38 36 0.36
39 10 0.10
40 50 0.50
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:70967303 original size:40 final size:40
Alignment explanation
Indices: 70967244--70967385 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
70967234 AAATTGAATG
* * *
70967244 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
70967284 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
70967324 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
70967364 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
70967386 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:70967386 original size:40 final size:39
Alignment explanation
Indices: 70967283--70967411 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
70967273 TGCTGGAAAT
* * *
70967283 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
70967323 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
70967363 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
70967403 TATATCCGG
1 TATATCCGG
70967412 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:70968955 original size:39 final size:38
Alignment explanation
Indices: 70968904--70969013 Score: 141
Period size: 39 Copynumber: 2.8 Consensus size: 38
70968894 ATATCACGAT
*
70968904 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAAA-GCACTA
*
70968943 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAAAG-CACTA
*
70968983 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
70969014 TAATTTCCAG
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
38 1 0.02
39 33 0.52
40 30 0.47
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAAAGCACTA
Found at i:70969010 original size:40 final size:38
Alignment explanation
Indices: 70968904--70969054 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 38
70968894 ATATCACGAT
* *
70968904 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATATGACTA
70968943 GCACGAATGCCTTCGGGTCTTAGCCCGGATATA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATATG--ACTA
* ** *
70968983 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT-ATGACTA
* * *
70969023 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
70969055 CATTCAATTT
Statistics
Matches: 96, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
38 1 0.01
39 33 0.34
40 61 0.64
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATATGACTA
Found at i:70978577 original size:40 final size:40
Alignment explanation
Indices: 70978532--70978699 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
70978522 CGGAATATAA
*
70978532 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
70978572 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
70978612 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
70978652 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
70978692 CCGGATAT
1 CCGGATAT
70978700 CATTCAATTT
Statistics
Matches: 103, Mismatches: 24, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
40 102 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70978682 original size:80 final size:80
Alignment explanation
Indices: 70978548--70978697 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
70978538 ATAACCATGT
* *
70978548 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
70978613 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
70978628 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
70978691 CCCGGAT
64 CCCGGAT
70978698 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:70986367 original size:40 final size:40
Alignment explanation
Indices: 70986246--70986388 Score: 139
Period size: 40 Copynumber: 3.6 Consensus size: 40
70986236 CATGTGCAAA
**
70986246 TGCCTTCGGGTCTTAGCCCGGATAG-AATGACTC-GCACGAA-
1 TGCCTTCGGGTCTTAGCCCGGAT-GTAACCAC-CAGCAC-AAT
* *
70986286 TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATGTAACCACCAGCACAAT
* *** *
70986326 TGCCTTCGGGTCTTAACCCGGATGTAATTTCCAGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATGTAACCACCAGCACAAT
* *
70986366 TGTCTTCGGGGCTTAGCCCGGAT
1 TGCCTTCGGGTCTTAGCCCGGAT
70986389 ATCATTCAAT
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.20, C:0.27, G:0.26, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATGTAACCACCAGCACAAT
Found at i:70989992 original size:101 final size:99
Alignment explanation
Indices: 70989810--70989992 Score: 242
Period size: 101 Copynumber: 1.8 Consensus size: 99
70989800 GGTACGCATT
* *
70989810 GTAGCCTGCACTTAGTACTACACATGCGACCAACAGTGTGGTACACGTAGTAGCCTGCACTTAGT
1 GTAGCCTGCACTTAGTACTACACACGCGACCAACAGTGTGGTACACATAGTAGCCTGCACTTAGT
**
70989875 ACCACACACGTGACCTCACCATCTAATACACGTA
66 ACCACACACGCAACCTCACCATCTAATACACGTA
* * * *
70989909 GTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTTGGGTACGCATAGTAGCCTGCACTT
1 GTAGCCTGCACTTAGTACTACACACGCGACCAACAG--TGT-GGTACACATAGTAGCCTGCACTT
* *
70989973 AGTACTACACATGCAACCTC
63 AGTACCACACACGCAACCTC
70989993 GCAATAGATC
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
98 4 0.06
99 28 0.39
100 2 0.03
101 37 0.52
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.25
Consensus pattern (99 bp):
GTAGCCTGCACTTAGTACTACACACGCGACCAACAGTGTGGTACACATAGTAGCCTGCACTTAGT
ACCACACACGCAACCTCACCATCTAATACACGTA
Found at i:70996018 original size:28 final size:27
Alignment explanation
Indices: 70995955--70996024 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
70995945 ATAGTGAGTC
*
70995955 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
70995982 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
70996010 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70996025 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:71000958 original size:46 final size:46
Alignment explanation
Indices: 71000905--71001080 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
71000895 TATTTGGGCA
71000905 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
71000951 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
71000998 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
71001044 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71001081 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:71001060 original size:93 final size:93
Alignment explanation
Indices: 71000901--71001072 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
71000891 GGGATATTTG
* *
71000901 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
71000966 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
71000994 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
71001059 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
71001073 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:71004055 original size:15 final size:15
Alignment explanation
Indices: 71004020--71004098 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
71004010 GTATCTTGGG
*
71004020 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
71004035 -TTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
71004049 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
71004064 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
71004079 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
71004093 TTTCTT
1 TTTCTT
71004099 GTTATCTTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
14 23 0.42
15 30 0.55
16 2 0.04
ACGTcount: A:0.10, C:0.16, G:0.14, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:71004081 original size:30 final size:30
Alignment explanation
Indices: 71004011--71004097 Score: 99
Period size: 29 Copynumber: 3.0 Consensus size: 30
71004001 CATAGTATCG
* * * *
71004011 TATCTTGGGTTTCTTTATCCT-GGATTCTT
1 TATCTTGGATTTCTTTATTCTGGGTTTCTC
71004040 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGGTTTCTC
*
71004070 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGGTTTCT
71004098 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
28 1 0.02
29 24 0.48
30 24 0.48
31 1 0.02
ACGTcount: A:0.10, C:0.16, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGGTTTCTC
Found at i:71006274 original size:46 final size:46
Alignment explanation
Indices: 71006221--71006396 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
71006211 TATTTGGGCA
71006221 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
71006267 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
71006314 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
71006360 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71006397 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:71006376 original size:93 final size:93
Alignment explanation
Indices: 71006217--71006388 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
71006207 GGGATATTTG
* *
71006217 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
71006282 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
71006310 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
71006375 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
71006389 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:71012496 original size:45 final size:44
Alignment explanation
Indices: 71012447--71012588 Score: 169
Period size: 45 Copynumber: 3.4 Consensus size: 44
71012437 TAACAGTACG
*
71012447 GTAACAATATCCGACACACAAAGTGCCGAATTGGTAACGGTAACA
1 GTAACAATATTCGACACACAAAGTGCCGAA-TGGTAACGGTAACA
71012492 GTAACAATATTCGACACACAAAGTGCCGAA---T--CGGTAAC-
1 GTAACAATATTCGACACACAAAGTGCCGAATGGTAACGGTAACA
*
71012530 G----AATATTCGACACACAAAGTGCCGAATCGGTAACGATAACA
1 GTAACAATATTCGACACACAAAGTGCCGAAT-GGTAACGGTAACA
*
71012571 ATAACAATATTCGACACA
1 GTAACAATATTCGACACA
71012589 TTGTGATGAT
Statistics
Matches: 83, Mismatches: 3, Indels: 22
0.77 0.03 0.20
Matches are distributed among these distances:
34 25 0.30
38 2 0.02
39 7 0.08
40 6 0.07
41 1 0.01
45 42 0.51
ACGTcount: A:0.42, C:0.23, G:0.18, T:0.18
Consensus pattern (44 bp):
GTAACAATATTCGACACACAAAGTGCCGAATGGTAACGGTAACA
Found at i:71012535 original size:34 final size:34
Alignment explanation
Indices: 71012492--71012565 Score: 141
Period size: 34 Copynumber: 2.2 Consensus size: 34
71012482 AACGGTAACA
71012492 GTAAC-AATATTCGACACACAAAGTGCCGAATCG
1 GTAACGAATATTCGACACACAAAGTGCCGAATCG
71012525 GTAACGAATATTCGACACACAAAGTGCCGAATCG
1 GTAACGAATATTCGACACACAAAGTGCCGAATCG
71012559 GTAACGA
1 GTAACGA
71012566 TAACAATAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
33 5 0.12
34 35 0.88
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.18
Consensus pattern (34 bp):
GTAACGAATATTCGACACACAAAGTGCCGAATCG
Found at i:71016104 original size:21 final size:19
Alignment explanation
Indices: 71016080--71016122 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
71016070 TAATGAAATA
71016080 TCTGATAAATGAATCCGTAAC
1 TCTGAT-AATG-ATCCGTAAC
* *
71016101 TCTGGTAATGCTCCGTAAC
1 TCTGATAATGATCCGTAAC
71016120 TCT
1 TCT
71016123 ATTCCGGTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
20 4 0.20
21 5 0.25
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (19 bp):
TCTGATAATGATCCGTAAC
Found at i:71021931 original size:11 final size:11
Alignment explanation
Indices: 71021915--71021939 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
71021905 CTATGATATT
71021915 TTATTATTTTA
1 TTATTATTTTA
71021926 TTATTATTTTA
1 TTATTATTTTA
71021937 TTA
1 TTA
71021940 GTATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:71024232 original size:37 final size:37
Alignment explanation
Indices: 71024182--71024262 Score: 144
Period size: 37 Copynumber: 2.2 Consensus size: 37
71024172 TTACGAAGTT
71024182 TTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
*
71024219 TTACCCGGTCATAATCTCCACACGTAGTCATCGGGTC
1 TTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
*
71024256 TCACCCG
1 TTACCCG
71024263 AAACATTTTC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.22, C:0.35, G:0.19, T:0.25
Consensus pattern (37 bp):
TTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:71024385 original size:49 final size:49
Alignment explanation
Indices: 71024317--71024674 Score: 528
Period size: 49 Copynumber: 7.4 Consensus size: 49
71024307 ATTCACATTA
* * * * * *
71024317 GCCATTCGGCTTTACCACATATATAGACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
*
71024366 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
* * *
71024415 GCCATTAGGCCTTATCACATATGCATACACTTTCACATTCACCACATCA
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
*
71024464 GCCATTAGGCCTTATCACATATACATACACTTTCACGTTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
71024513 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
*
71024562 GCCATTAGGCCTTATCACATAT--ATACACTTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
* * *
71024609 GCCA-TACGGCCTTATCACACAT--ATGCACTTTCACATTCATCACATTG
1 GCCATTA-GGCCTTATCACATATACATACACTTTCACATTCATCACATCG
*
71024656 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
71024675 CATATGTGTA
Statistics
Matches: 291, Mismatches: 16, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
46 2 0.01
47 82 0.28
48 1 0.00
49 206 0.71
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.30
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
Found at i:71028548 original size:44 final size:45
Alignment explanation
Indices: 71028449--71028666 Score: 334
Period size: 44 Copynumber: 4.9 Consensus size: 45
71028439 CTAAATTCAT
*
71028449 TCACTGGCATTATAGCCTGCTAGGCTCAAATGCCCGAATAGTATC
1 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
71028494 TTACCGGCATTATAGCCTGCTAGGCTCGAAGGCCC-AATAGTATC
1 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
71028538 TCACTAGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAG-ATC
1 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
71028582 TCA-TCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACT-GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
71028627 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATA
1 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
71028667 ATACTGTGCG
Statistics
Matches: 156, Mismatches: 13, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
43 1 0.01
44 79 0.51
45 76 0.49
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (45 bp):
TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:71028622 original size:89 final size:89
Alignment explanation
Indices: 71028449--71028666 Score: 348
Period size: 89 Copynumber: 2.4 Consensus size: 89
71028439 CTAAATTCAT
* *
71028449 TCACTGGCATTATAGCCTGCTAGGCTCAAATGCCCGAATAGTATCTTACCGGCATTATAGCCTGC
1 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCCTGC
*
71028514 TAGGCTCGAAGGCCCAATAGTATC
66 TAGGCTCAAAGGCCCAATAGTATC
* * *
71028538 TCACTAGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAG-ATCTCATCGGCATTATAGCCTGC
1 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCCTGC
71028602 TAGGCTCAAAGGCCCGAATAGTATC
66 TAGGCTCAAAGGCCC-AATAGTATC
* *
71028627 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATA
1 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
71028667 ATACTGTGCG
Statistics
Matches: 118, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
88 35 0.30
89 83 0.70
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (89 bp):
TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCCTGC
TAGGCTCAAAGGCCCAATAGTATC
Found at i:71029532 original size:47 final size:47
Alignment explanation
Indices: 71029474--71029569 Score: 156
Period size: 47 Copynumber: 2.0 Consensus size: 47
71029464 AAAATTTTCT
* * *
71029474 TTAATTAAGTAACTTATCCGGAAATATTAAGGGAAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCAGAAATATTAAGAGAAAATTTAACAAGC
*
71029521 TTAACTAAGTAACTTATCCAGAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCAGAAATATTAAGAGAAAATTTAACAAGC
71029568 TT
1 TT
71029570 TAAATTCAAC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.30
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCAGAAATATTAAGAGAAAATTTAACAAGC
Found at i:71036147 original size:45 final size:45
Alignment explanation
Indices: 71036037--71036296 Score: 323
Period size: 45 Copynumber: 5.8 Consensus size: 45
71036027 CTGAATTCAT
* * * *
71036037 TCACCGGCATT-TCGCCTGCTAGGCTCGAA-GCCC-GATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGT-ATC
** * *
71036079 TCACTAGCATTATAGCCTGCTAGGCTCAAATG-CTAGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCA-AATAGTATC
* * *
71036124 TTACCGGCATTACAGCTTGCTAGGCTCAAAGGCCCAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
* * *
71036169 TCACCAGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
* *
71036214 TCACGGGCATTATAGCCTGCTAGGCTCAAAGGCCTAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
71036259 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAA
71036297 AAATATTGTG
Statistics
Matches: 185, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
42 9 0.05
43 17 0.09
44 1 0.01
45 155 0.84
46 3 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
Found at i:71037165 original size:47 final size:48
Alignment explanation
Indices: 71037112--71037210 Score: 166
Period size: 47 Copynumber: 2.1 Consensus size: 48
71037102 AAAATTTTCT
71037112 TTAACTAAGTAACTTATCCGGAAATATTAA-AGGAAAATTTAACAAGC-
1 TTAACTAAGTAACTTATCCGGAAATATTAAGA-GAAAATTTAACAAGCA
*
71037159 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGCA
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGAAAATTTAACAAGCA
71037207 TTAA
1 TTAA
71037211 ATTCAACTTA
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
47 44 0.90
48 5 0.10
ACGTcount: A:0.46, C:0.13, G:0.12, T:0.28
Consensus pattern (48 bp):
TTAACTAAGTAACTTATCCGGAAATATTAAGAGAAAATTTAACAAGCA
Found at i:71039433 original size:39 final size:39
Alignment explanation
Indices: 71039390--71039477 Score: 142
Period size: 39 Copynumber: 2.3 Consensus size: 39
71039380 TTCTAGCATG
71039390 TAGCCTGCGGACCTTAAGTCC-GGTTATAATTCCAGCACA
1 TAGCCTGCGGACCTTAAGTCCTGG-TATAATTCCAGCACA
*
71039429 TAGCCTGCGGACCTTAAGTCCTGGTATAATTCCAGCATA
1 TAGCCTGCGGACCTTAAGTCCTGGTATAATTCCAGCACA
*
71039468 TAACCTGCGG
1 TAGCCTGCGG
71039478 GTCTTTAAGC
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 44 0.96
40 2 0.04
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
TAGCCTGCGGACCTTAAGTCCTGGTATAATTCCAGCACA
Found at i:71047322 original size:39 final size:39
Alignment explanation
Indices: 71047279--71047376 Score: 153
Period size: 39 Copynumber: 2.5 Consensus size: 39
71047269 CAGGACATAT
*
71047279 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCG-GTTAAAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGAG-TAAAA
*
71047318 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGAGTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGAGTAAAA
*
71047357 TTCCAGCATATAGCCTGCGG
1 TTCCAGCACATAGCCTGCGG
71047377 GTCTTTAAGC
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
39 54 0.98
40 1 0.02
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGAGTAAAA
Found at i:71051265 original size:28 final size:29
Alignment explanation
Indices: 71051233--71051293 Score: 97
Period size: 28 Copynumber: 2.1 Consensus size: 29
71051223 CACATACCTA
71051233 TATATGACCCACTAGGCCC-AATCACATT
1 TATATGACCCACTAGGCCCAAATCACATT
* *
71051261 TATATGGCCCATTAGGCCCAAATCACATT
1 TATATGACCCACTAGGCCCAAATCACATT
71051290 TATA
1 TATA
71051294 GTCATGCTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 17 0.57
29 13 0.43
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.28
Consensus pattern (29 bp):
TATATGACCCACTAGGCCCAAATCACATT
Found at i:71051531 original size:16 final size:16
Alignment explanation
Indices: 71051507--71051537 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
71051497 GTAGTCAGAC
71051507 TTTTAACTTTTCGGCG
1 TTTTAACTTTTCGGCG
*
71051523 TTTTGACTTTTCGGC
1 TTTTAACTTTTCGGC
71051538 ATTTCGGCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.19, G:0.19, T:0.52
Consensus pattern (16 bp):
TTTTAACTTTTCGGCG
Found at i:71058066 original size:46 final size:45
Alignment explanation
Indices: 71058012--71058133 Score: 163
Period size: 46 Copynumber: 2.6 Consensus size: 45
71058002 GGTATGTGAG
*
71058012 CCAGTGTAAGACATGTTTGAGACATGCATCGACCACAACATAAGTT
1 CCAGTGTAAGACATGTTTG-GACATGCATCGACCACAACATAAGTC
* * * *
71058058 TCAGTGTAAGACATGTCTGGAACATGCATCGGCCACAACATGAGTC
1 CCAGTGTAAGACATGTTTGG-ACATGCATCGACCACAACATAAGTC
*
71058104 CCAGTGTAAGACATGTTTGGGACATTCATC
1 CCAGTGTAAGACATGTTT-GGACATGCATC
71058134 AGCCTTGGGA
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
45 1 0.02
46 63 0.95
47 2 0.03
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (45 bp):
CCAGTGTAAGACATGTTTGGACATGCATCGACCACAACATAAGTC
Found at i:71058299 original size:49 final size:49
Alignment explanation
Indices: 71058195--71058327 Score: 124
Period size: 49 Copynumber: 2.7 Consensus size: 49
71058185 CTTGTTGGGT
* * * *
71058195 GTCAGTGTAAGACCTGTCTGGGATATGACATCGACACCGATAAATGAGA
1 GTCAGTGTAAGACATGTCTAGGACATGACATCGACACCGATAAATGAAA
* * * **
71058244 GCCAGTGTAAGACATGTCTAGGACATGGCATCGAC-CATGATATGTGAAA
1 GTCAGTGTAAGACATGTCTAGGACATGACATCGACAC-CGATAAATGAAA
* * * * *
71058293 GTCAGTGTAAGGCTTGTTTGGGACACGACATCGAC
1 GTCAGTGTAAGACATGTCTAGGACATGACATCGAC
71058328 TTTAATGTGC
Statistics
Matches: 67, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
48 1 0.01
49 66 0.99
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (49 bp):
GTCAGTGTAAGACATGTCTAGGACATGACATCGACACCGATAAATGAAA
Found at i:71059828 original size:46 final size:45
Alignment explanation
Indices: 71059778--71059953 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
71059768 TGGTTGAGCA
*
71059778 TCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA-G
* * *
71059824 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A-G
*
71059869 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAAG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AAAG
* * * * *
71059917 CCCGAGCTCGTTCAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71059954 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 61 0.56
47 28 0.26
48 3 0.03
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAG
Found at i:71059934 original size:93 final size:93
Alignment explanation
Indices: 71059775--71059946 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
71059765 GGATGGTTGA
* *
71059775 GCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTCAGT
71059840 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
71059868 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAA-GCCCGAGCTCGTTCAG
1 GCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGC-AAATGCCCGAACTCGTTCAG
*
71059932 TTGAGTCTGAGTTCG
65 TTGAGTCCGAGTTCG
71059947 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 69 0.96
94 3 0.04
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTCAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71067380 original size:46 final size:45
Alignment explanation
Indices: 71067330--71067503 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
71067320 TGGTTGAGCA
71067330 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTG-GTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71067376 TCCGAACTCGTTGGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
71067420 CATCCGAACTCGTTGGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71067467 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTG-GTTGAGTCCGAGTTCACTTATGG
71067504 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
44 3 0.03
45 26 0.24
46 63 0.58
47 3 0.03
49 4 0.04
50 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71072915 original size:49 final size:50
Alignment explanation
Indices: 71072862--71073082 Score: 227
Period size: 49 Copynumber: 4.4 Consensus size: 50
71072852 TACGCATAGG
* *
71072862 AGCCTGCACTTAGTACTACTCATGCGA-CCAATTATCCGGTACATGTAGT
1 AGCCTGCACTTAGTACTACACATGCGAGCCAATTATCCGGTACACGTAGT
* ** * *
71072911 AGCCTGCACTTAGTACTACACATGTGA-CCTAACCATCTGATACACGTAGT
1 AGCCTGCACTTAGTACTACACATGCGAGCC-AATTATCCGGTACACGTAGT
* * * * * * *
71072961 AGCTTGCACCTAGTACTACACACT-TGATCGAAGTTAT-CGCGTACGCATAGT
1 AGCCTGCACTTAGTACTACACA-TGCGAGCCAA-TTATCCG-GTACACGTAGT
*
71073012 AGCCTGCACTTAGTACTACACATGC-AGCCAATAATCCGGTACACGTAGT
1 AGCCTGCACTTAGTACTACACATGCGAGCCAATTATCCGGTACACGTAGT
*
71073061 AGCCTGCTCTTAGTACTACACA
1 AGCCTGCACTTAGTACTACACA
71073083 CGTGACCTCA
Statistics
Matches: 140, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
49 60 0.43
50 48 0.34
51 32 0.23
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (50 bp):
AGCCTGCACTTAGTACTACACATGCGAGCCAATTATCCGGTACACGTAGT
Found at i:71075634 original size:28 final size:27
Alignment explanation
Indices: 71075603--71075719 Score: 103
Period size: 28 Copynumber: 4.1 Consensus size: 27
71075593 GTGAGCATGA
*
71075603 ATAT-AATGTGATTTGGGTCGGACGGGCC
1 ATATAAATGTGA-TTGGG-CGGATGGGCC
* *
71075631 ATATAAATGAGATTGGGCCTGATGGGCC
1 ATATAAATGTGATTGGG-CGGATGGGCC
71075659 ATATGAAA-GTGAATTGGGCTGGATGGGCC
1 ATAT-AAATGTG-ATTGGGC-GGATGGGCC
* **
71075688 ATATAAATGAGATTGGGCCTAGTGGGCC
1 ATATAAATGTGATTGGGCGGA-TGGGCC
71075716 ATAT
1 ATAT
71075720 GCATGTATGT
Statistics
Matches: 74, Mismatches: 9, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
27 1 0.01
28 44 0.59
29 29 0.39
ACGTcount: A:0.27, C:0.13, G:0.33, T:0.26
Consensus pattern (27 bp):
ATATAAATGTGATTGGGCGGATGGGCC
Found at i:71075683 original size:29 final size:28
Alignment explanation
Indices: 71075626--71075719 Score: 131
Period size: 28 Copynumber: 3.3 Consensus size: 28
71075616 TGGGTCGGAC
71075626 GGGCCATATAAATGAGATTGGGCCTGAT
1 GGGCCATATAAATGAGATTGGGCCTGAT
71075654 GGGCCATATGAAAGTGA-ATTGGG-CTGGAT
1 GGGCCATAT-AAA-TGAGATTGGGCCT-GAT
71075683 GGGCCATATAAATGAGATTGGGCCT-AGT
1 GGGCCATATAAATGAGATTGGGCCTGA-T
71075711 GGGCCATAT
1 GGGCCATAT
71075720 GCATGTATGT
Statistics
Matches: 60, Mismatches: 0, Indels: 12
0.83 0.00 0.17
Matches are distributed among these distances:
27 4 0.07
28 30 0.50
29 23 0.38
30 3 0.05
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.24
Consensus pattern (28 bp):
GGGCCATATAAATGAGATTGGGCCTGAT
Done.