Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 232 of 410
Found at i:71709609 original size:12 final size:12
Alignment explanation
Indices: 71709592--71709617 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
71709582 AACATCACCA
71709592 AAATAAATGTCC
1 AAATAAATGTCC
71709604 AAATAAATGTCC
1 AAATAAATGTCC
71709616 AA
1 AA
71709618 TGACCATTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (12 bp):
AAATAAATGTCC
Found at i:71715037 original size:29 final size:29
Alignment explanation
Indices: 71715003--71715080 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
71714993 GTGACGAGAT
* *
71715003 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
71715032 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
71715061 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
71715081 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:71722727 original size:29 final size:29
Alignment explanation
Indices: 71722693--71722770 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
71722683 GTGACGAGAT
* *
71722693 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
71722722 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
71722751 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
71722771 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:71725579 original size:29 final size:29
Alignment explanation
Indices: 71725546--71725610 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
71725536 GTGACGAGAT
*
71725546 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
71725575 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
71725604 CGGCACT
1 TGGCACT
71725611 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:71733471 original size:29 final size:29
Alignment explanation
Indices: 71733438--71733502 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
71733428 GTGACGAGAT
*
71733438 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
71733467 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
71733496 CGGCACT
1 TGGCACT
71733503 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:71738916 original size:40 final size:41
Alignment explanation
Indices: 71738815--71738925 Score: 143
Period size: 40 Copynumber: 2.7 Consensus size: 41
71738805 ACTCAAATTC
* *
71738815 TCGCACACTAAGTGCCAATACATAGCTGAAGCTATTTTAATA
1 TCGCACACTAAGTGCC-ATACATAGCCGAAGCTATCTTAATA
*** *
71738857 TATTACACTAAGTGCCATACATAGCCGAAGCTATCTTGA-A
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTTAATA
*
71738897 TCGCACACTAAGTACCATACATAGCCGAA
1 TCGCACACTAAGTGCCATACATAGCCGAA
71738926 TTGTCATCAA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 26 0.44
41 20 0.34
42 13 0.22
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.25
Consensus pattern (41 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTTAATA
Found at i:71744062 original size:49 final size:47
Alignment explanation
Indices: 71743945--71744261 Score: 465
Period size: 47 Copynumber: 6.7 Consensus size: 47
71743935 GATTTTACGC
* * *
71743945 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
71743992 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
71744039 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
71744088 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCA-ATGT
71744137 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
71744184 GATGAATGTGAAGGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
71744231 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAGGTGTATATATGTGATAAG
71744262 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 154 0.62
48 9 0.04
49 87 0.35
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:71744069 original size:96 final size:93
Alignment explanation
Indices: 71743945--71744261 Score: 465
Period size: 96 Copynumber: 3.3 Consensus size: 93
71743935 GATTTTACGC
71743945 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
71744010 TATATGTGATAAGGCCGAATGGCCAATGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
71744039 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
* *
71744104 TATATATATGTGATAAGGCCTAATGG-CAGATGT
61 TGTATATATGTGATAAGGCCGAATGGCCA-ATGT
* *
71744137 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
* * *
71744202 TATATGTGATAGGGCCGAGTGGCCAACGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
* *
71744231 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTG-AAGTGTATATATGTGATAAG
71744262 TCCCGAAGGG
Statistics
Matches: 204, Mismatches: 12, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
94 62 0.30
95 9 0.04
96 87 0.43
97 7 0.03
98 39 0.19
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (93 bp):
GATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTAT
ATATGTGATAAGGCCGAATGGCCAATGT
Found at i:71746254 original size:42 final size:41
Alignment explanation
Indices: 71746190--71746401 Score: 214
Period size: 40 Copynumber: 5.2 Consensus size: 41
71746180 CTCGACGATG
* * *
71746190 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGCGATATAT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTG-TATAT
* * * * *
71746232 ATCCGGGTTAAGTCCCGTAGAGCATTCGTGCTGGTGT-TAC
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
*
71746272 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTG-ATAT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
* *
71746312 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTG-ATGT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
* * ** * * *
71746352 ATCCGGACCAGGTTCCGAAGAGCAGTCATGCTGGTGATATGT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTG-TATAT
*
71746394 ATTCGGGC
1 ATCCGGGC
71746402 CTTCGAGCCT
Statistics
Matches: 147, Mismatches: 20, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
40 103 0.70
41 1 0.01
42 43 0.29
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
Found at i:71746432 original size:43 final size:43
Alignment explanation
Indices: 71746384--71746561 Score: 311
Period size: 43 Copynumber: 4.1 Consensus size: 43
71746374 CAGTCATGCT
71746384 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
71746427 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
71746470 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
* * * **
71746513 GGTGATATGTATTCGGGTCTTCGTGCTTAGCAGGCTTAATGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
71746556 GGTGAT
1 GGTGAT
71746562 TCGAGCAAGG
Statistics
Matches: 130, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 130 1.00
ACGTcount: A:0.15, C:0.21, G:0.33, T:0.31
Consensus pattern (43 bp):
GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
Found at i:71750418 original size:49 final size:47
Alignment explanation
Indices: 71750301--71750617 Score: 465
Period size: 47 Copynumber: 6.7 Consensus size: 47
71750291 GATTTTACGC
* * *
71750301 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
71750348 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
71750395 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
71750444 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCA-ATGT
71750493 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
71750540 GATGAATGTGAAGGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
71750587 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAGGTGTATATATGTGATAAG
71750618 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 154 0.62
48 9 0.04
49 87 0.35
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:71750425 original size:96 final size:93
Alignment explanation
Indices: 71750301--71750617 Score: 465
Period size: 96 Copynumber: 3.3 Consensus size: 93
71750291 GATTTTACGC
71750301 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
71750366 TATATGTGATAAGGCCGAATGGCCAATGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
71750395 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
* *
71750460 TATATATATGTGATAAGGCCTAATGG-CAGATGT
61 TGTATATATGTGATAAGGCCGAATGGCCA-ATGT
* *
71750493 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
* * *
71750558 TATATGTGATAGGGCCGAGTGGCCAACGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
* *
71750587 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTG-AAGTGTATATATGTGATAAG
71750618 TCCCGAAGGG
Statistics
Matches: 204, Mismatches: 12, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
94 62 0.30
95 9 0.04
96 87 0.43
97 7 0.03
98 39 0.19
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (93 bp):
GATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTAT
ATATGTGATAAGGCCGAATGGCCAATGT
Found at i:71753424 original size:40 final size:40
Alignment explanation
Indices: 71753369--71753469 Score: 166
Period size: 40 Copynumber: 2.5 Consensus size: 40
71753359 ACTCTCGCAA
*
71753369 TAAGTGCCATACATAGCCGAAGTTATCTCGAAGTGCACAC
1 TAAGTGCCATACATAGCCGAAGCTATCTCGAAGTGCACAC
* *
71753409 TAAGTGCCATACATAGCCAAAGCTATCTCGAATTGCACAC
1 TAAGTGCCATACATAGCCGAAGCTATCTCGAAGTGCACAC
*
71753449 TAAGTGCCATACATAGTCGAA
1 TAAGTGCCATACATAGCCGAA
71753470 TTGTCATCAA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.23
Consensus pattern (40 bp):
TAAGTGCCATACATAGCCGAAGCTATCTCGAAGTGCACAC
Found at i:71757014 original size:40 final size:40
Alignment explanation
Indices: 71756937--71757157 Score: 279
Period size: 40 Copynumber: 5.6 Consensus size: 40
71756927 AAACCAAGTA
** * *
71756937 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
71756976 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
71757016 CCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * * *
71757056 CCTTCAGGACTTAGCCCGGATATAATAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * *
71757096 CCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACAAATG
*
71757135 CCTTTGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
71757158 CATCCGAATT
Statistics
Matches: 161, Mismatches: 16, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
38 1 0.01
39 44 0.27
40 115 0.71
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:71761319 original size:38 final size:37
Alignment explanation
Indices: 71761237--71761414 Score: 189
Period size: 38 Copynumber: 4.6 Consensus size: 37
71761227 AAACCCAAAC
* * * * *
71761237 ATAACACCAGCACGAAGCCTACAGGACTTTAAACTCAGAT
1 ATAATACCAGCACTAAGCCTGC-GGA-TTT-AACCCGGAT
*
71761277 ATAATACCAGCACTAGGCCTGCGGCATTTAACCCGGAT
1 ATAATACCAGCACTAAGCCTGCGG-ATTTAACCCGGAT
*
71761315 ATAATACCAGCA-TGAAGCCTACGGGATTTAACCCGGAT
1 ATAATACCAGCACT-AAGCCTGC-GGATTTAACCCGGAT
*
71761353 ATATTACCAGCACTAAGCCTGCAGGATTTAACCCGGAT
1 ATAATACCAGCACTAAGCCTGC-GGATTTAACCCGGAT
*
71761391 ATAATTCCAGCA-TATAGCCTGCGG
1 ATAATACCAGCACTA-AGCCTGCGG
71761415 GTCTTTAAGC
Statistics
Matches: 120, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
37 5 0.04
38 88 0.73
39 8 0.07
40 19 0.16
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.21
Consensus pattern (37 bp):
ATAATACCAGCACTAAGCCTGCGGATTTAACCCGGAT
Found at i:71761373 original size:76 final size:76
Alignment explanation
Indices: 71761237--71761431 Score: 232
Period size: 76 Copynumber: 2.5 Consensus size: 76
71761227 AAACCCAAAC
* * * * * *
71761237 ATAACACCAGCACGAAGCCTACAGGACTTTAAACTCAGATATAATACCAGCACTAGGCCTGC-GG
1 ATAATACCAGCATGAAGCCTACGGGA-TTT-AACCCGGATATAATACCAGCACTAAGCCTGCAGG
71761301 CATTTAACCCGGAT
64 -ATTTAACCCGGAT
*
71761315 ATAATACCAGCATGAAGCCTACGGGATTTAACCCGGATATATTACCAGCACTAAGCCTGCAGGAT
1 ATAATACCAGCATGAAGCCTACGGGATTTAACCCGGATATAATACCAGCACTAAGCCTGCAGGAT
71761380 TTAACCCGGAT
66 TTAACCCGGAT
* * *
71761391 ATAATTCCAGCAT-ATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ATAATACCAGCATGA-AGCCTACGGG-ATTTAA-CCCGGATA
71761432 CAATCTCAGC
Statistics
Matches: 103, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
75 1 0.01
76 61 0.59
77 10 0.10
78 31 0.30
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.22
Consensus pattern (76 bp):
ATAATACCAGCATGAAGCCTACGGGATTTAACCCGGATATAATACCAGCACTAAGCCTGCAGGAT
TTAACCCGGAT
Found at i:71767193 original size:46 final size:46
Alignment explanation
Indices: 71767105--71767332 Score: 135
Period size: 50 Copynumber: 4.8 Consensus size: 46
71767095 ACATTATGAG
*
71767105 AGCCAGTGTAAGACCATGTCTGGGACATGCATCGACCTCGAGATGTA
1 AGCCAGTGTAAGACCATGTCTGGAACATGCATCGA-CTCGAGATGTA
*
71767152 AGCCAGTGTAAGA-CATGTCTGGAACATGCATTTG-CTACGAGATGT-
1 AGCCAGTGTAAGACCATGTCTGGAACATGCA-TCGACT-CGAGATGTA
* * * * * * * *
71767197 -GTCAATGTAGGACCATGTCTGGGACATGGCATCGGCACAGATATGGGA
1 AGCCAGTGTAAGACCATGTCTGGAACAT-GCATCGACTC-GAGAT-GTA
* * * * *
71767245 GAGCTAGTGTAAGACCATGTCATGGGACATGGCGTCAGCCTC-A-ATTTCGA
1 -AGCCAGTGTAAGACCATGTC-TGGAACAT-GCATC-GACTCGAGATGT--A
* *
71767295 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 -AGCCAGTGTAAGACCATGTCTGGAACAT-GCATCGAC
71767333 ATTATACCCT
Statistics
Matches: 143, Mismatches: 24, Indels: 27
0.74 0.12 0.14
Matches are distributed among these distances:
44 9 0.06
45 18 0.13
46 32 0.22
47 16 0.11
48 2 0.01
49 15 0.10
50 35 0.24
51 13 0.09
52 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (46 bp):
AGCCAGTGTAAGACCATGTCTGGAACATGCATCGACTCGAGATGTA
Found at i:71770915 original size:41 final size:40
Alignment explanation
Indices: 71770725--71770916 Score: 224
Period size: 40 Copynumber: 4.8 Consensus size: 40
71770715 TTATAGTGAT
* *
71770725 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAAC
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAC
* * * * *
71770765 TCGCACGAATGCCTTAGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAC
* * *
71770805 TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAC
* * *
71770845 TCGCACAAACGCCTTCGGGAATT-GACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGACTTAG-CCCGGATTTAGTAAC
* *
71770885 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGACTTAGCCCGGA
71770917 CACCATTCGA
Statistics
Matches: 131, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
40 104 0.79
41 26 0.20
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAC
Found at i:71776837 original size:17 final size:17
Alignment explanation
Indices: 71776815--71776847 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
71776805 TTTACTTGCT
71776815 AACAAATTAAACATTTC
1 AACAAATTAAACATTTC
71776832 AACAAATTAAACATTT
1 AACAAATTAAACATTT
71776848 TGATACAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (17 bp):
AACAAATTAAACATTTC
Found at i:71779343 original size:15 final size:15
Alignment explanation
Indices: 71779323--71779356 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
71779313 ACTAAGATGA
71779323 TGCCTACCGCAATGT
1 TGCCTACCGCAATGT
71779338 TGCCTACCGCAATGT
1 TGCCTACCGCAATGT
71779353 TGCC
1 TGCC
71779357 ACTCAGGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.18, C:0.35, G:0.21, T:0.26
Consensus pattern (15 bp):
TGCCTACCGCAATGT
Found at i:71780826 original size:27 final size:27
Alignment explanation
Indices: 71780754--71780817 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
71780744 GGCATAATTG
* * * *
71780754 TCATTTTACCATACAAGGGTATTACGA
1 TCATTTTACCTTATAGGGGCATTACGA
*
71780781 TCATTTTACCTTATAGGGGCATTATGA
1 TCATTTTACCTTATAGGGGCATTACGA
71780808 TCA-TTTACCT
1 TCATTTTACCT
71780818 ATTTTGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 7 0.22
27 25 0.78
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (27 bp):
TCATTTTACCTTATAGGGGCATTACGA
Found at i:71781088 original size:16 final size:16
Alignment explanation
Indices: 71781067--71781101 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
71781057 CCAACGTGGT
*
71781067 CCATAACGGCCTAGGC
1 CCATAACGGCCTAAGC
*
71781083 CCATAATGGCCTAAGC
1 CCATAACGGCCTAAGC
71781099 CCA
1 CCA
71781102 CACAAGCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.37, G:0.20, T:0.14
Consensus pattern (16 bp):
CCATAACGGCCTAAGC
Found at i:71783663 original size:27 final size:26
Alignment explanation
Indices: 71783607--71783662 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
71783597 ATCTCTTTCG
*
71783607 AAAACCAAGATTTAGAAAAACTTTTA
1 AAAACCAAGATTTAGAAAAACTTTAA
71783633 AAAACCAA-ATATTGAGAAAAA-TTTAA
1 AAAACCAAGAT-TT-AGAAAAACTTTAA
71783659 AAAA
1 AAAA
71783663 AAACCATTCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 2 0.07
26 18 0.67
27 7 0.26
ACGTcount: A:0.61, C:0.09, G:0.07, T:0.23
Consensus pattern (26 bp):
AAAACCAAGATTTAGAAAAACTTTAA
Found at i:71789775 original size:28 final size:28
Alignment explanation
Indices: 71789702--71789761 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 28
71789692 CCATAGGGGA
*
71789702 CACACGGTCGTGCAACATAGCCATGTGT
1 CACACGGCCGTGCAACATAGCCATGTGT
71789730 CACACGGCCGTGCAACATAGCCATGTGT
1 CACACGGCCGTGCAACATAGCCATGTGT
71789758 CACA
1 CACA
71789762 TGGCTGTGAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.27, C:0.32, G:0.23, T:0.18
Consensus pattern (28 bp):
CACACGGCCGTGCAACATAGCCATGTGT
Found at i:71795627 original size:80 final size:80
Alignment explanation
Indices: 71795543--71795691 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
71795533 TATGGTAACC
* * * *
71795543 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
71795607 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
71795623 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
71795688 CCGG
66 CCGG
71795692 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:71795633 original size:40 final size:38
Alignment explanation
Indices: 71795584--71795691 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
71795574 ATCACGATTT
*
71795584 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
71795624 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
71795664 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
71795692 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:71810760 original size:40 final size:40
Alignment explanation
Indices: 71810715--71810844 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
71810705 CGGAATATAA
71810715 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
71810755 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
71810795 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
71810835 CCGGATATAA
1 CCGGATATAA
71810845 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:71810859 original size:40 final size:40
Alignment explanation
Indices: 71810731--71810882 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
71810721 ATAAGCATGT
* * *
71810731 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
71810771 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
71810811 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
71810851 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
71810883 CATTCAATTT
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:71810865 original size:80 final size:80
Alignment explanation
Indices: 71810731--71810882 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
71810721 ATAAGCATGT
* *
71810731 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
71810796 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
71810811 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
71810874 CCCGGATAT
64 CCCGGATAT
71810883 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:71815253 original size:18 final size:19
Alignment explanation
Indices: 71815230--71815272 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
71815220 TGTAAGTAGG
71815230 CCGTGTGG-TCACACATGC
1 CCGTGTGGCTCACACATGC
*
71815248 CCGTGTGGCTCAGACATGC
1 CCGTGTGGCTCACACATGC
*
71815267 CTGTGT
1 CCGTGT
71815273 TCTCAGCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.14, C:0.30, G:0.30, T:0.26
Consensus pattern (19 bp):
CCGTGTGGCTCACACATGC
Found at i:71818737 original size:15 final size:15
Alignment explanation
Indices: 71818717--71818747 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
71818707 AAATATGAAA
71818717 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
71818732 GATATGTTTTGTATT
1 GATATGTTTTGGATT
71818747 G
1 G
71818748 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:71819357 original size:45 final size:45
Alignment explanation
Indices: 71819297--71819515 Score: 221
Period size: 45 Copynumber: 4.9 Consensus size: 45
71819287 TAAGATTCCG
* *
71819297 ATATGTACTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCGAT
1 ATATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * *
71819342 ATATGTATTTTCGTGTAAGACCACATCTGGGAAGTTGGTATCGAT
1 ATATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * *
71819387 ATATGTGTTTTTGTGTAAGACCACGTCTGGGACATTGGCATCGAT
1 ATATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* ** * * * *
71819432 ACATGTGGTTACGTGTAAGACCACATCTAGGACAG-TGACATCGAT
1 ATATGTATTTTCGTGTAAGACCACGTCTGGGAC-GTTGGCATCGAT
** * *
71819477 ATGA-G-A-TAGCATGTAAGAACACGTCTGGGACGTTGGCAT
1 AT-ATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
71819516 TGTTCAATAT
Statistics
Matches: 143, Mismatches: 28, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
42 1 0.01
43 24 0.17
45 117 0.82
46 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (45 bp):
ATATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
Found at i:71826617 original size:80 final size:80
Alignment explanation
Indices: 71826524--71826671 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 80
71826514 GAAATTATAA
* * *
71826524 CCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGC-TAC-AACCGGGTTAAGACCCGAAGGCAA
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT--CATACTAACCGGGCTAAGACCCGAAGGCAA
71826586 TTGTGCTAGTGGCTACAT
63 TTGTGCTAGTGGCTACAT
* * *
71826604 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATACTAACCGGGCTAAGACCCGAAGGCAATTG
71826669 TGC
66 TGC
71826672 AAATCGTGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
78 1 0.02
79 5 0.08
80 53 0.90
ACGTcount: A:0.24, C:0.25, G:0.30, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATACTAACCGGGCTAAGACCCGAAGGCAATTG
TGCTAGTGGCTACAT
Found at i:71826646 original size:40 final size:38
Alignment explanation
Indices: 71826524--71826671 Score: 163
Period size: 40 Copynumber: 3.7 Consensus size: 38
71826514 GAAATTATAA
* * *
71826524 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAA
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCGAGT-GCTACAT
* *
71826564 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACAT
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCGAGT-GCTACAT
*
71826604 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-CATTCTAT
1 CCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGC-TAC-AT
71826644 CCGGGCTAAGACCCGAAGGCATTTGTGC
1 CCGGGCTAAGACCCGAAGGCA-TTGTGC
71826672 AAATCGTGAT
Statistics
Matches: 100, Mismatches: 4, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 92 0.92
41 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.30, T:0.21
Consensus pattern (38 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCGAGTGCTACAT
Found at i:71826685 original size:40 final size:39
Alignment explanation
Indices: 71826480--71826703 Score: 155
Period size: 40 Copynumber: 5.6 Consensus size: 39
71826470 AAATTGAATG
* * * *
71826480 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAGTCGT
* * * * *
71826520 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG-T
* * * * * *
71826560 ACAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG-T
* * * *
71826600 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTC-GT
* *
71826640 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGT
* * *
71826679 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
71826704 CTTGGTGCGG
Statistics
Matches: 153, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
37 4 0.03
38 2 0.01
39 3 0.02
40 144 0.94
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGT
Found at i:71826686 original size:80 final size:80
Alignment explanation
Indices: 71826564--71826712 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
71826554 GTGGCTACAA
* * * *
71826564 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
71826629 TGCGAGTCATTCTAT
66 TGCGAGTCATTCTAT
* * * * * * *
71826644 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGCATTC
71826708 GTGCG
65 GTGCG
71826713 GGTTACCATA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATTCTAT
Found at i:71828472 original size:43 final size:46
Alignment explanation
Indices: 71828372--71828473 Score: 117
Period size: 43 Copynumber: 2.3 Consensus size: 46
71828362 TTCACCGAAA
* * *
71828372 TAGGCCTGAAGCCCG---ATATTATCTCACCGGCATTATAGCCTGC
1 TAGGCCCGAAGCCCGATAATATTATCTCACCAGCATTAAAGCCTGC
*
71828415 TAGGCCCGAAGCCCGATAATATTAT-TCACCAGC-TTAAAGCTTGC
1 TAGGCCCGAAGCCCGATAATATTATCTCACCAGCATTAAAGCCTGC
*
71828459 TAGG-CCGAGGCCCGA
1 TAGGCCCGAAGCCCGA
71828474 ATATCACATT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
43 24 0.47
44 13 0.25
45 7 0.14
46 7 0.14
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (46 bp):
TAGGCCCGAAGCCCGATAATATTATCTCACCAGCATTAAAGCCTGC
Found at i:71828727 original size:2 final size:2
Alignment explanation
Indices: 71828715--71828747 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
71828705 CACAAAGAAC
*
71828715 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
71828748 CAATCAAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:71834794 original size:16 final size:17
Alignment explanation
Indices: 71834773--71834804 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
71834763 CCACAATTTC
71834773 CAAATTAGTCC-TTTTA
1 CAAATTAGTCCATTTTA
71834789 CAAATTAGTCCATTTT
1 CAAATTAGTCCATTTT
71834805 CATAACTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.31, C:0.19, G:0.06, T:0.44
Consensus pattern (17 bp):
CAAATTAGTCCATTTTA
Found at i:71840529 original size:16 final size:15
Alignment explanation
Indices: 71840505--71840534 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
71840495 AACTGTTCTA
71840505 TTACAAATTTCACTC
1 TTACAAATTTCACTC
71840520 TTACATAATTTCACT
1 TTACA-AATTTCACT
71840535 TACTCCTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:71840858 original size:50 final size:50
Alignment explanation
Indices: 71840732--71841024 Score: 216
Period size: 50 Copynumber: 5.8 Consensus size: 50
71840722 GTCACCGAAG
* * * * *
71840732 CTATCTGGTACGCATAGTAGCCTGCACTTCGTATTACACATGCGACC-AA
1 CTATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * * ** *
71840781 CAATCCGGTACATGTAGTAGCTTGCACTTAGTACTACACATGTGACCTAA
1 CTATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * *
71840831 CTATCTGATACACGTAGTAGCCTGCACTTAGTACTACATATGTGA-TTGAA
1 CTATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA
* * * * * * * *
71840881 GTTGTCGGGTACGCATAGTCGCTTGCACTTAGTACTACACATGCGACCTAA
1 -CTATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * ** * *
71840932 CTGTCT-AGTACACATATTAGCCTATACTTAGGACTACACACGTGACCTAAAA
1 CTATCTGA-TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AA
* * * *
71840984 CCATCTTA-AGCACATAGTATCCTGCACATAGTACTACACAT
1 CTATCTGATA-CACATAGTAGCCTGCACTTAGTACTACACAT
71841025 TTGTTCTCAC
Statistics
Matches: 187, Mismatches: 48, Indels: 15
0.75 0.19 0.06
Matches are distributed among these distances:
49 39 0.21
50 78 0.42
51 38 0.20
52 31 0.17
53 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (50 bp):
CTATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
Found at i:71842971 original size:6 final size:6
Alignment explanation
Indices: 71842960--71843061 Score: 86
Period size: 6 Copynumber: 16.8 Consensus size: 6
71842950 AACCAAAATG
*
71842960 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * * *
71843008 AGTAA-C AGGATC AGAATC AAAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
71843057 AGAAT
1 AGAAT
71843062 GTGAATGCAA
Statistics
Matches: 77, Mismatches: 10, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
5 5 0.06
6 65 0.84
7 5 0.06
8 2 0.03
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:71843012 original size:30 final size:30
Alignment explanation
Indices: 71842960--71843061 Score: 143
Period size: 30 Copynumber: 3.4 Consensus size: 30
71842950 AACCAAAATG
*
71842960 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
71842990 AGAATCAGAATCA-ATATTAGTAACAGGATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
* *
71843020 AGAATCAAAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
71843051 AGAATCAGAAT
1 AGAATCAGAAT
71843062 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
29 1 0.02
30 42 0.67
31 20 0.32
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:71843216 original size:27 final size:26
Alignment explanation
Indices: 71843179--71843244 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
71843169 AGCATGGCTG
*
71843179 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
71843205 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
71843232 CCAGAATCAGATA
1 CCAGAA-CAGATA
71843245 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:71843249 original size:27 final size:27
Alignment explanation
Indices: 71843179--71843252 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
71843169 AGCATGGCTG
* *
71843179 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
71843205 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
71843232 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
71843253 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:71843259 original size:27 final size:27
Alignment explanation
Indices: 71843203--71843260 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
71843193 GTGACAGAGT
* * *
71843203 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
71843230 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
71843257 CACC
1 CACC
71843261 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:71843601 original size:27 final size:26
Alignment explanation
Indices: 71843562--71843644 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
71843552 TCGATCGGTC
* *
71843562 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
71843588 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
71843615 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
71843642 AAC
1 AAC
71843645 GCTTCCTCCG
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 8 0.15
27 44 0.85
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:71843692 original size:16 final size:16
Alignment explanation
Indices: 71843671--71843701 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
71843661 ATCCCAACCC
*
71843671 ATGCAACATGTCATGT
1 ATGCAAAATGTCATGT
71843687 ATGCAAAATGTCATG
1 ATGCAAAATGTCATG
71843702 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (16 bp):
ATGCAAAATGTCATGT
Found at i:71844038 original size:27 final size:27
Alignment explanation
Indices: 71843843--71844030 Score: 250
Period size: 27 Copynumber: 7.0 Consensus size: 27
71843833 GGGGCAAAAT
* ** *
71843843 GGTAATTTTACCCTACAAAGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
71843870 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
71843897 GGTATTTCTACCCTACAAGGGTCTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
71843924 GATAATTCTACCCTACGGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
71843951 GGTAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
71843978 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
71844005 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
71844031 TAGTAATTTC
Statistics
Matches: 139, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:71844083 original size:27 final size:27
Alignment explanation
Indices: 71844047--71844455 Score: 452
Period size: 27 Copynumber: 15.1 Consensus size: 27
71844037 TTTCACAATT
71844047 GAGGGTAAAACAGTAATTCTGTAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
* * *
71844074 GATGGTAAAAC-GATAATTTTGTAAACC
1 GAGGGTAAAACAG-TAATTCTGTAAATC
* *
71844101 GAGGGTAAACCAGTAATTCTATAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
* * **
71844128 GAGGGTAAAACGGTAATTTTACAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
71844155 GAGGGTAAAACAGTAATTCTGTAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
71844182 GAGGGTAAAACAGTAATTCTGTAAA-C
1 GAGGGTAAAACAGTAATTCTGTAAATC
71844208 TGAGGGTAAAAC-GATAATTCTGTAAATC
1 -GAGGGTAAAACAG-TAATTCTGTAAATC
* **
71844236 GAAGGTAAAATGGTAATTCTGTAAA-C
1 GAGGGTAAAACAGTAATTCTGTAAATC
*
71844262 TGAGGGTAAAACGGTAATTCTGTAAATC
1 -GAGGGTAAAACAGTAATTCTGTAAATC
* ** *
71844290 GAGGGTAAAACAGTAATTTTACAAATT
1 GAGGGTAAAACAGTAATTCTGTAAATC
* *
71844317 AAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
* * *
71844344 GAAGGTAAAATAGTAATTCTATAAA-C
1 GAGGGTAAAACAGTAATTCTGTAAATC
**
71844370 TGAGGGTAAAATGGTAATTCTGTAAATC
1 -GAGGGTAAAACAGTAATTCTGTAAATC
* * * **
71844398 GAAGGTAAAACGGTAATTTTAAAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
*
71844425 GAGGGTAAAAC-GATAATTCTGTAAATA
1 GAGGGTAAAACAG-TAATTCTGTAAATC
71844452 GAGG
1 GAGG
71844456 CCTAAAGCCT
Statistics
Matches: 322, Mismatches: 49, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.02
27 311 0.97
28 5 0.02
ACGTcount: A:0.42, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
GAGGGTAAAACAGTAATTCTGTAAATC
Found at i:71844189 original size:108 final size:108
Alignment explanation
Indices: 71844033--71844450 Score: 506
Period size: 108 Copynumber: 3.9 Consensus size: 108
71844023 GGGTATTTTA
* * * *
71844033 GTAATTTCAC-AATTGAGGGTAAAACAGTAATTCTGTAAATCGATGGTAAAAC-GATAATTTTGT
1 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTTTAT
* * * *
71844096 AAACCGAGGGT-AAACCAGTAATTCTATAAATCGAGGGTAAAACG
65 AAACCGAGGGTAAAACGA-TAATTCTGTAAATCGAAGGTAAAATG
* *
71844140 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
1 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTATA
*
71844205 AACTGAGGGTAAAACGATAATTCTGTAAATCGAAGGTAAAATG
66 AACCGAGGGTAAAACGATAATTCTGTAAATCGAAGGTAAAATG
* *
71844248 GTAATTCTGTA-AACT-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTA
1 GTAATT-T-TACAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTA
* *** * *
71844311 CAAATTAAGGGTAAAACGGTAATTCTGTAAATCGAAGGTAAAATA
64 TAAACCGAGGGTAAAACGATAATTCTGTAAATCGAAGGTAAAATG
* * ** * * *
71844356 GTAATTCTATAAA-CTGAGGGTAAAATGGTAATTCTGTAAATCGAAGGTAAAACGGTAATTTTAA
1 GTAATTTTACAAATC-GAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTAT
*
71844420 AAATCGAGGGTAAAACGATAATTCTGTAAAT
65 AAACCGAGGGTAAAACGATAATTCTGTAAAT
71844451 AGAGGCCTAA
Statistics
Matches: 276, Mismatches: 27, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
106 2 0.01
107 11 0.04
108 251 0.91
109 10 0.04
110 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (108 bp):
GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTATA
AACCGAGGGTAAAACGATAATTCTGTAAATCGAAGGTAAAATG
Found at i:71845718 original size:15 final size:15
Alignment explanation
Indices: 71845698--71845729 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
71845688 TTGATTAATG
71845698 TACAAAAATGTGAGT
1 TACAAAAATGTGAGT
71845713 TACAAAAATGTGAGT
1 TACAAAAATGTGAGT
71845728 TA
1 TA
71845730 ACCATGAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (15 bp):
TACAAAAATGTGAGT
Found at i:71852817 original size:46 final size:44
Alignment explanation
Indices: 71852659--71852916 Score: 164
Period size: 46 Copynumber: 5.5 Consensus size: 44
71852649 TTGTCGATGC
* *
71852659 CATGTCCCGGACATGGTCTTACACTGGCT-ATCATCATTGAGGCCAATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCGTC-TCA---AGGCCAATG
* * * * * * * *
71852707 CCATCTCCTAGACATAGTGTTACACTGACACATCTTATAGGTC-ATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCGTCTCA-AGGCCAATG
* * *
71852753 CATGTCCCAAACATGTCTTATACTGGCTTACGTCTCAAGGCCTATG
1 CATGTCCCAGACATGTCTTACACTGGC-T-CGTCTCAAGGCCAATG
* * *
71852799 CATGTCCCAGACATGTCTTACACTAGCACTCGTTTCAATGCCAATG
1 CATGTCCCAGACATGTCTTACACT-G-GCTCGTCTCAAGGCCAATG
* *
71852845 CCATGTCCCAGATATAGTCTTACACTGGCTC-TCAT-AATGTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCGTC-TCAA---GGCCAATG
71852893 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
71852917 AGCATACAAA
Statistics
Matches: 165, Mismatches: 32, Indels: 27
0.74 0.14 0.12
Matches are distributed among these distances:
44 10 0.06
45 18 0.11
46 60 0.36
47 33 0.20
48 17 0.10
49 24 0.15
50 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGGCTCGTCTCAAGGCCAATG
Found at i:71857069 original size:29 final size:29
Alignment explanation
Indices: 71857009--71857149 Score: 250
Period size: 29 Copynumber: 4.9 Consensus size: 29
71856999 CATACATGCT
*
71857009 TATGGCCCATTAGGCCC-AATCTCAT-TCA
1 TATGGCCCATTAGGCCCAAATCACATCT-A
71857037 TATGGCCCATTAGGCCCAAATCACATCTA
1 TATGGCCCATTAGGCCCAAATCACATCTA
71857066 TATGGCCCATTAGGCCCAAATCACATCTA
1 TATGGCCCATTAGGCCCAAATCACATCTA
71857095 TATGGCCCATTAGGCCCAAATCACATCTA
1 TATGGCCCATTAGGCCCAAATCACATCTA
71857124 TATGGCCCATTAGGCCCAAATCACAT
1 TATGGCCCATTAGGCCCAAATCACAT
71857150 TCACAGTCAT
Statistics
Matches: 110, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
28 17 0.15
29 92 0.84
30 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.14, T:0.25
Consensus pattern (29 bp):
TATGGCCCATTAGGCCCAAATCACATCTA
Found at i:71858805 original size:92 final size:93
Alignment explanation
Indices: 71858694--71858863 Score: 279
Period size: 92 Copynumber: 1.8 Consensus size: 93
71858684 GCCCCTAAGT
* *
71858694 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTC-GACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71858758 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
71858786 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATTCATAGGTGAACTCGGACTCAACTTAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71858851 CGAGTTCGGATGC
66 CGAGTTCGGATGC
71858864 TTAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 47 0.66
93 24 0.34
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:71858837 original size:46 final size:46
Alignment explanation
Indices: 71858689--71858860 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
71858679 AACCCGCCCC
* * * *
71858689 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATTCA
*
71858735 TAAGTGAACTC-GACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A-TT-CA
* *
71858780 TCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATTCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATTCA
* *
71858827 TAGGTGAACTCGGACTCAACTTAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
71858861 TGCTTAACCA
Statistics
Matches: 105, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 1 0.01
45 23 0.22
46 45 0.43
47 25 0.24
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATTCA
Found at i:71866371 original size:45 final size:46
Alignment explanation
Indices: 71866210--71866381 Score: 162
Period size: 45 Copynumber: 3.8 Consensus size: 46
71866200 AACCCGCCCC
* *
71866210 TAAG-GAACTCAG-CTCAACTCAACGAGCTCAGG-CGTTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTC-GGACATTCGCATCCA
* *
71866254 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCTAGTT-ACAT-C-
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA----C-A-TTCGCATCCA
* * *
71866303 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71866348 T-AGTGAACTCAGACTCAACTCAACGAGTTCGGAC
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGAC
71866382 GCTCAACCAT
Statistics
Matches: 106, Mismatches: 9, Indels: 25
0.76 0.06 0.18
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 7 0.07
45 39 0.37
46 16 0.15
48 29 0.27
49 2 0.02
50 2 0.02
51 3 0.03
52 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:71878253 original size:28 final size:27
Alignment explanation
Indices: 71878220--71878272 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
71878210 TTAGAATACT
*
71878220 TTAGTTTACTAAAATTACCGAAATACGC
1 TTAGTTT-CTAAAAATACCGAAATACGC
* *
71878248 TTAGTTTGTAAAAATACTGAAATAC
1 TTAGTTTCTAAAAATACCGAAATAC
71878273 CCTCGATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACCGAAATACGC
Found at i:71878259 original size:27 final size:27
Alignment explanation
Indices: 71878229--71878327 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
71878219 TTTAGTTTAC
71878229 TAAAATTACCGAAATACGCTTAG-TTTG
1 TAAAATTACCGAAATAC-CTTAGATTTG
* * * *
71878256 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCTTAGATTTG
* * *
71878283 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTAGATTTG
71878310 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
71878328 CCCGATTTAC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.10
27 56 0.90
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTAGATTTG
Found at i:71878328 original size:54 final size:54
Alignment explanation
Indices: 71878229--71878335 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
71878219 TTTAGTTTAC
* * *
71878229 TAAAATTACCGAAATACGCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACGCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
71878283 TAAAATTACTGAAATAC-CTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACGCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
71878336 ACAGAATTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 7 0.16
54 38 0.84
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACGCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:71878454 original size:27 final size:26
Alignment explanation
Indices: 71878327--71878455 Score: 159
Period size: 27 Copynumber: 4.8 Consensus size: 26
71878317 ACCAAAGTAC
* *
71878327 CCCCGATTTACAGAATTACCATTTTA
1 CCCCGATTTACAAAATTACTATTTTA
* **
71878353 CCCCTGATTTACATAATTACCGTTTTAA
1 CCCC-GATTTACAAAATTACTATTTT-A
*
71878381 CCCCGATTTACATAATTACTATTTTA
1 CCCCGATTTACAAAATTACTATTTTA
*
71878407 CCCTTGATTTACAAAATTACTATTTTA
1 CCC-CGATTTACAAAATTACTATTTTA
71878434 CCCTCGATTTACAAAATTACTA
1 CCC-CGATTTACAAAATTACTA
71878456 AAATACCCTT
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
26 8 0.09
27 80 0.86
28 5 0.05
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (26 bp):
CCCCGATTTACAAAATTACTATTTTA
Found at i:71878462 original size:27 final size:27
Alignment explanation
Indices: 71878257--71878654 Score: 155
Period size: 27 Copynumber: 14.7 Consensus size: 27
71878247 CTTAGTTTGT
* * **
71878257 AAAAATACTGAAATACCCTCGATTTGT
1 AAAATTACTAAAATACCCTCGATTTAC
* * * **
71878284 AAAATTACTGAAATACCTTCGACTTGT
1 AAAATTACTAAAATACCCTCGATTTAC
* * *
71878311 AAAATTACCAAAGTACCCCCGATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
* * ***
71878338 AGAATTACCATTTTACCC-CTGATTTAC
1 AAAATTACTAAAATACCCTC-GATTTAC
* ***
71878365 ATAATTACCGTTTTA-ACCC-CGATTTAC
1 AAAATTA-C-TAAAATACCCTCGATTTAC
* *** *
71878392 ATAATTACTATTTTACCCTTGATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
***
71878419 AAAATTACTATTTTACCCTCGATTTAC
1 AAAATTACTAAAATACCCTCGATTTAC
* * **
71878446 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCCTCGATTTAC
* * **
71878473 AAAATTAC-CAAATAACCCTAG-TTTGT
1 AAAATTACTAAAAT-ACCCTCGATTTAC
* * * **
71878499 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCCTCGATTTAC
* ** * **
71878526 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACTAAAATACCCTCGATTTAC
*
71878553 AAAATTACCAAAATACCC-CTGATTTAC
1 AAAATTACTAAAATACCCTC-GATTTAC
* * *
71878580 AAAGTTACAAAAATACCCTTGACTTT-C
1 AAAATTACTAAAATACCCTCGA-TTTAC
* * *
71878607 TAAAAATTA-TAGAAATACCATTGGTTTAC
1 --AAAATTACTA-AAATACCCTCGATTTAC
*
71878636 AAAATTGCTAAAATACCCT
1 AAAATTACTAAAATACCCT
71878655 TGGTTTGTAG
Statistics
Matches: 301, Mismatches: 54, Indels: 32
0.78 0.14 0.08
Matches are distributed among these distances:
25 3 0.01
26 30 0.10
27 234 0.78
28 15 0.05
29 19 0.06
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTCGATTTAC
Found at i:71878463 original size:54 final size:54
Alignment explanation
Indices: 71878270--71878641 Score: 198
Period size: 54 Copynumber: 6.9 Consensus size: 54
71878260 AATACTGAAA
** ** * ** *
71878270 TACCCTCGATTTGTAAAATTACTGAAATA-CCTTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTACAAAATTACCAAAATACCCTT-GATTTACAAAATTACCAAAT
* * *** * * ***
71878324 TACCCCCGATTTACAGAATTACCATTTTACCCCTGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAT
* * *** * **
71878378 TAACCC-CGATTTACATAATTACTATTTTACCCTTGATTTACAAAATTACTATTT
1 T-ACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAT
* * **
71878432 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAT
* * ** * ***
71878486 AACCCTAG-TTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAA-
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAAAATTACC-AAAT
* ** * * * *
71878539 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTACAAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAT
* * * *
71878593 TACCCTTGACTTT-CTAAAAATTA-TAGAAATACCATTGGTTTACAAAATT
1 TACCCTCGA-TTTAC--AAAATTACCA-AAATACCCTTGATTTACAAAATT
71878642 GCTAAAATAC
Statistics
Matches: 250, Mismatches: 58, Indels: 18
0.77 0.18 0.06
Matches are distributed among these distances:
53 49 0.20
54 164 0.66
55 11 0.04
56 26 0.10
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.34
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAT
Found at i:71878520 original size:53 final size:54
Alignment explanation
Indices: 71878432--71878570 Score: 201
Period size: 53 Copynumber: 2.6 Consensus size: 54
71878422 ATTACTATTT
* ** *
71878432 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACC-AAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAA
* *
71878485 TAACCCT-AGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 T-ACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAA
71878539 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
71878571 CTGATTTACA
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
53 43 0.57
54 33 0.43
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAA
Found at i:71878657 original size:27 final size:27
Alignment explanation
Indices: 71878387--71878660 Score: 160
Period size: 27 Copynumber: 10.1 Consensus size: 27
71878377 TTAACCCCGA
* *** *
71878387 TTTACATAATTACTATTTTACCCTTGA
1 TTTACAAAATTACTAAAATACCCTTGG
*** * *
71878414 TTTACAAAATTACTATTTTACCCTCGA
1 TTTACAAAATTACTAAAATACCCTTGG
71878441 TTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACTAAAATACCCTTGG
** * *
71878468 TTTGTAAAATTAC-CAAATAACCC-TAG
1 TTTACAAAATTACTAAAAT-ACCCTTGG
** *
71878494 TTTGTAAAATTACCAAAATACCCTTGG
1 TTTACAAAATTACTAAAATACCCTTGG
*** ** ***
71878521 TTTGTGAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACTAAAATACCCTTGG
** * * *
71878548 TTTGTAAAATTACCAAAATACCCCTGA
1 TTTACAAAATTACTAAAATACCCTTGG
* * *
71878575 TTTACAAAGTTACAAAAATACCCTTGAC
1 TTTACAAAATTACTAAAATACCCTTG-G
*
71878603 TTT-CTAAAAATTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACTA-AAATACCCTTGG
*
71878631 TTTACAAAATTGCTAAAATACCCTTGG
1 TTTACAAAATTACTAAAATACCCTTGG
71878658 TTT
1 TTT
71878661 GTAGATTTAC
Statistics
Matches: 203, Mismatches: 35, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
26 23 0.11
27 154 0.76
28 9 0.04
29 17 0.08
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACTAAAATACCCTTGG
Found at i:71880067 original size:11 final size:11
Alignment explanation
Indices: 71880032--71880086 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
71880022 ATGGTATGTC
71880032 TGATATGCACA
1 TGATATGCACA
* *
71880043 TGACATG--TA
1 TGATATGCACA
71880052 TGATATGCACA
1 TGATATGCACA
*
71880063 TGATATG--TA
1 TGATATGCACA
71880072 TGATATGCACA
1 TGATATGCACA
71880083 TGAT
1 TGAT
71880087 GTATTAATAA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.33
Consensus pattern (11 bp):
TGATATGCACA
Found at i:71880086 original size:20 final size:20
Alignment explanation
Indices: 71880020--71880086 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
71880010 ATTTTGATAA
* *
71880020 ACATGGTATGTCTGATATGC
1 ACATGATATGTATGATATGC
*
71880040 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
71880060 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
71880080 ACATGAT
1 ACATGAT
71880087 GTATTAATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:71880192 original size:24 final size:23
Alignment explanation
Indices: 71880136--71880302 Score: 192
Period size: 24 Copynumber: 7.0 Consensus size: 23
71880126 GATGAAGTGA
71880136 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
71880159 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
71880182 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
**
71880206 CAAAAGGGCTTACACCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
71880230 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* * * *
71880253 AAAAAGGGATTTTACCCCAATTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
71880278 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
71880302 A
1 A
71880303 TGATAAAGCA
Statistics
Matches: 122, Mismatches: 17, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
23 42 0.34
24 71 0.58
25 9 0.07
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:71880205 original size:47 final size:47
Alignment explanation
Indices: 71880136--71880302 Score: 203
Period size: 47 Copynumber: 3.5 Consensus size: 47
71880126 GATGAAGTGA
* *
71880136 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATACCCCAGTTAT
* *
71880182 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACACCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATACCCCAGTTAT
* * * *
71880230 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGATTTTACCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATACCCCAGTTA-T
*
71880278 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
71880303 TGATAAAGCA
Statistics
Matches: 105, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
47 63 0.60
48 30 0.29
49 12 0.11
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATACCCCAGTTAT
Found at i:71880226 original size:71 final size:71
Alignment explanation
Indices: 71880136--71880287 Score: 223
Period size: 71 Copynumber: 2.1 Consensus size: 71
71880126 GATGAAGTGA
** * * *
71880136 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGATTATACCCCA
*
71880201 GTTATC
66 ATTATC
*
71880207 AAAAGGGCTTACACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGATTTTACCCCA
1 AAAAGGGCTTACACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGATTATACCCCA
*
71880272 ATTATT
66 ATTATC
71880278 AAAAGAGGCT
1 AAAAG-GGCT
71880288 AGGCCTCCAG
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
71 68 0.94
72 4 0.06
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTACACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGATTATACCCCA
ATTATC
Found at i:71880530 original size:31 final size:31
Alignment explanation
Indices: 71880495--71880558 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
71880485 CGTTTACAGT
*
71880495 AAAGGCTTCGGCCCAATAATATGAAATTTGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
* * **
71880526 AAAGGCTTTGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
71880557 AA
1 AA
71880559 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATAATATGAAATATGA
Found at i:71888465 original size:22 final size:21
Alignment explanation
Indices: 71888415--71888466 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
71888405 CCATTTTACT
*
71888415 TTTATTTTGATTTAAATTTTTA
1 TTTATTTT-ATTTAAATTTTCA
*
71888437 TTAATTTT-TTTATAATTCTTCA
1 TTTATTTTATTTA-AATT-TTCA
71888459 TTTATTTT
1 TTTATTTT
71888467 CTTCTGACAG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
20 4 0.16
21 4 0.16
22 17 0.68
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (21 bp):
TTTATTTTATTTAAATTTTCA
Found at i:71896113 original size:18 final size:18
Alignment explanation
Indices: 71896092--71896128 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
71896082 CACACATGTG
71896092 ACCTAGCTACTACATAGT
1 ACCTAGCTACTACATAGT
71896110 ACCTAGCTACTACATAGT
1 ACCTAGCTACTACATAGT
71896128 A
1 A
71896129 TCTCGTAGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (18 bp):
ACCTAGCTACTACATAGT
Found at i:71902087 original size:40 final size:40
Alignment explanation
Indices: 71902050--71902235 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
71902040 GCTACTCGTT
*
71902050 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
71902090 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
71902130 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
71902170 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
71902211 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71902236 CATCATTCGA
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 3 0.02
40 118 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:71919771 original size:29 final size:28
Alignment explanation
Indices: 71919722--71919794 Score: 101
Period size: 29 Copynumber: 2.6 Consensus size: 28
71919712 TGTTTATGGC
*
71919722 TTATGGTTTAATGGTTGGGGTTTAAAGG
1 TTATGGGTTAATGGTTGGGGTTTAAAGG
* **
71919750 TTATGGGTTAGTGGTTAGGGGTTTATGGG
1 TTATGGGTTAATGGTT-GGGGTTTAAAGG
71919779 TTATGGGTTAATGGTT
1 TTATGGGTTAATGGTT
71919795 TAAGGGTTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 14 0.36
29 25 0.64
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (28 bp):
TTATGGGTTAATGGTTGGGGTTTAAAGG
Found at i:71919775 original size:22 final size:21
Alignment explanation
Indices: 71919750--71919817 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 21
71919740 GGTTTAAAGG
*
71919750 TTATGGGTTAGTGGTTAGGGGT
1 TTATGGGTTA-TGGTTAAGGGT
*
71919772 TTATGGGTTATGGGTTAATGGT
1 TTATGGGTTAT-GGTTAAGGGT
* *
71919794 TTAAGGGTTAATGCTTAAGGGT
1 TTATGGGTT-ATGGTTAAGGGT
71919816 TT
1 TT
71919818 TTATTTTGTG
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
21 1 0.03
22 36 0.92
23 2 0.05
ACGTcount: A:0.19, C:0.01, G:0.37, T:0.43
Consensus pattern (21 bp):
TTATGGGTTATGGTTAAGGGT
Found at i:71919786 original size:15 final size:15
Alignment explanation
Indices: 71919685--71919802 Score: 65
Period size: 15 Copynumber: 8.2 Consensus size: 15
71919675 CTATTTAAAA
71919685 GTTTA-GGGTTTATGG
1 GTTTATGGG-TTATGG
71919700 GTTTA-GGGATTAT--
1 GTTTATGGG-TTATGG
*
71919713 GTTTATGGCTTAT-G
1 GTTTATGGGTTATGG
*
71919727 GTTTAAT-GGTT-GGG
1 GTTT-ATGGGTTATGG
**
71919741 GTTTAAAGGTTATGG
1 GTTTATGGGTTATGG
*
71919756 G-TTA-GTGGTTAGGG
1 GTTTATG-GGTTATGG
71919770 GTTTATGGGTTATGG
1 GTTTATGGGTTATGG
* * *
71919785 GTTAATGGTTTAAGG
1 GTTTATGGGTTATGG
71919800 GTT
1 GTT
71919803 AATGCTTAAG
Statistics
Matches: 82, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
13 10 0.12
14 29 0.35
15 42 0.51
16 1 0.01
ACGTcount: A:0.18, C:0.01, G:0.37, T:0.44
Consensus pattern (15 bp):
GTTTATGGGTTATGG
Found at i:71919803 original size:15 final size:14
Alignment explanation
Indices: 71919729--71919816 Score: 70
Period size: 14 Copynumber: 6.1 Consensus size: 14
71919719 GGCTTATGGT
*
71919729 TTAATGGTT-GGGG
1 TTAATGGTTAAGGG
* *
71919742 TTTAAAGGTTATGGG
1 -TTAATGGTTAAGGG
* *
71919757 TTAGTGGTTAGGGG
1 TTAATGGTTAAGGG
* *
71919771 TTTATGGGTTATGGG
1 TTAAT-GGTTAAGGG
71919786 TTAATGGTTTAAGGG
1 TTAATGG-TTAAGGG
*
71919801 TTAATGCTTAAGGG
1 TTAATGGTTAAGGG
71919815 TT
1 TT
71919817 TTTATTTTGT
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
14 33 0.55
15 27 0.45
ACGTcount: A:0.20, C:0.01, G:0.38, T:0.41
Consensus pattern (14 bp):
TTAATGGTTAAGGG
Found at i:71920082 original size:202 final size:202
Alignment explanation
Indices: 71919834--71920321 Score: 772
Period size: 202 Copynumber: 2.4 Consensus size: 202
71919824 TGTGGTTTAA
*
71919834 GGTTTAGGGGATACAGTTTAGGGTACTTTAGTAGGGGGAT-TAGTTTAATGGTTTAAGGTTTAGA
1 GGTTTAGGGGATATAGTTTAGGGTACTTTAGTAGGGGGATATAGTTTAATGGTTTAAGGTTTAGA
*
71919898 GTATTTATTAATTAGTGTTATTATTTTATGGTTTAAGGATCAAGGGATATAGTTTAGGGTTATGA
66 GTATTTATTAATTAGTGTTATTATTTTATGGTTTAAGGATCAAGGGATATAGTTCA-GGTTATGA
* *
71919963 TTAATTCATACATTTTGTGGTTAAGGCTTAAGGG-TTATTGTTTTGTGGTTTATGGTTAGGGGTT
130 TTAATTCATACATTTTGTGGTTAAGGCTT-AGGGCTTATTGTTTTGTGGTTTATGGTTAAGGGAT
71920027 ATAGTTCAG
194 ATAGTTCAG
*
71920036 GGTTTAAGGGATATAGTTTAGGGTACTTTAGTA-GGGGATATAGTTTAATGGTTTAAGGTTTAGA
1 GGTTTAGGGGATATAGTTTAGGGTACTTTAGTAGGGGGATATAGTTTAATGGTTTAAGGTTTAGA
* *
71920100 GTATTGATTAATTAGTGTTATTATTTTGTGGTTTAAGGATCAAGGGATATAGTTCAGGTTATGAT
66 GTATTTATTAATTAGTGTTATTATTTTATGGTTTAAGGATCAAGGGATATAGTTCAGGTTATGAT
*
71920165 TAATTCATATATTTTGTGGTTAAGGCTTAGGGCTTATTGTTTTGTGGTTTATGGTTAAGGGATAT
131 TAATTCATACATTTTGTGGTTAAGGCTTAGGGCTTATTGTTTTGTGGTTTATGGTTAAGGGATAT
*
71920230 AGTTTAG
196 AGTTCAG
* * **
71920237 GGTTTAGGGGATATACTTTAGGGT--TTAAGGTTATAGGGATATAGTTTAATGGTTTAAGGTTTA
1 GGTTTAGGGGATATAGTTTAGGGTACTTTA-G-TAGGGGGATATAGTTTAATGGTTTAAGGTTTA
71920300 GAGT-TTTGATTAATTAGTGTTA
64 GAGTATTT-ATTAATTAGTGTTA
71920322 ATAATATTAA
Statistics
Matches: 266, Mismatches: 14, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
199 3 0.01
200 5 0.02
201 104 0.39
202 154 0.58
ACGTcount: A:0.26, C:0.03, G:0.28, T:0.44
Consensus pattern (202 bp):
GGTTTAGGGGATATAGTTTAGGGTACTTTAGTAGGGGGATATAGTTTAATGGTTTAAGGTTTAGA
GTATTTATTAATTAGTGTTATTATTTTATGGTTTAAGGATCAAGGGATATAGTTCAGGTTATGAT
TAATTCATACATTTTGTGGTTAAGGCTTAGGGCTTATTGTTTTGTGGTTTATGGTTAAGGGATAT
AGTTCAG
Found at i:71920240 original size:20 final size:21
Alignment explanation
Indices: 71920211--71920266 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
71920201 TTGTTTTGTG
*
71920211 GTTTATGG-TTAAGGGATATA
1 GTTTAGGGTTTAAGGGATATA
*
71920231 GTTTAGGGTTTAGGGGATATA
1 GTTTAGGGTTTAAGGGATATA
*
71920252 CTTTAGGGTTTAAGG
1 GTTTAGGGTTTAAGG
71920267 TTATAGGGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 7 0.23
21 24 0.77
ACGTcount: A:0.25, C:0.02, G:0.34, T:0.39
Consensus pattern (21 bp):
GTTTAGGGTTTAAGGGATATA
Found at i:71920268 original size:28 final size:29
Alignment explanation
Indices: 71920231--71920300 Score: 90
Period size: 28 Copynumber: 2.4 Consensus size: 29
71920221 AAGGGATATA
*
71920231 GTTTAGGGTTTAGGGGATATACTTT-AGG
1 GTTTAAGGTTTAGGGGATATACTTTAAGG
* *
71920259 GTTTAAGGTTATA-GGGATATAGTTTAATG
1 GTTTAAGGTT-TAGGGGATATACTTTAAGG
71920288 GTTTAAGGTTTAG
1 GTTTAAGGTTTAG
71920301 AGTTTTGATT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 22 0.61
29 14 0.39
ACGTcount: A:0.26, C:0.01, G:0.31, T:0.41
Consensus pattern (29 bp):
GTTTAAGGTTTAGGGGATATACTTTAAGG
Found at i:71923511 original size:14 final size:13
Alignment explanation
Indices: 71923488--71923517 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
71923478 ATTACTATAA
71923488 TAATTATATGAAG
1 TAATTATATGAAG
71923501 TAATATATATGAAG
1 TAAT-TATATGAAG
71923515 TAA
1 TAA
71923518 AATTATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (13 bp):
TAATTATATGAAG
Found at i:71925027 original size:30 final size:30
Alignment explanation
Indices: 71924991--71925096 Score: 124
Period size: 30 Copynumber: 3.4 Consensus size: 30
71924981 TTAAATAATA
71924991 CATAACTTACATAATTTAAAGTTCAAATTT
1 CATAACTTACATAATTTAAAGTTCAAATTT
* *
71925021 CATAACTTACATAATTTACTTAACTTACATAA-TA
1 CATAACTTACATAATTTA---AAGTT-CA-AATTT
* *
71925055 CATGACTTACATAATTTAAAGATCAAATTT
1 CATAACTTACATAATTTAAAGTTCAAATTT
71925085 CATAACTTACAT
1 CATAACTTACAT
71925097 GATACATAAC
Statistics
Matches: 63, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
29 2 0.03
30 32 0.51
31 3 0.05
33 4 0.06
34 20 0.32
35 2 0.03
ACGTcount: A:0.43, C:0.16, G:0.03, T:0.38
Consensus pattern (30 bp):
CATAACTTACATAATTTAAAGTTCAAATTT
Found at i:71925053 original size:64 final size:64
Alignment explanation
Indices: 71924965--71925115 Score: 234
Period size: 64 Copynumber: 2.4 Consensus size: 64
71924955 CCAGCAATTC
* * *
71924965 ACATAATTTACATAATTTAAATAATACATAACTTACATAATTTAAAGTTCAAATTTCATAACTT
1 ACATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTT
* *
71925029 ACATAATTTACTTAACTTACATAATACATGACTTACATAATTTAAAGATCAAATTTCATAACTT
1 ACATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTT
*
71925093 ACATGA--TACATAACTTACATAAT
1 ACATAATTTACATAACTTACATAAT
71925116 TTAAAGACCA
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
62 16 0.20
64 64 0.80
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.37
Consensus pattern (64 bp):
ACATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTT
Found at i:71925102 original size:46 final size:46
Alignment explanation
Indices: 71925041--71925250 Score: 277
Period size: 46 Copynumber: 4.6 Consensus size: 46
71925031 ATAATTTACT
*
71925041 TAACTTACATAATACATGACTTACATAATTTAAAGATCAAATTTCA
1 TAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCA
* *
71925087 TAACTTACATGATACATAACTTACATAATTTAAAGACCAAATTTCA
1 TAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCA
* * * *
71925133 TAAGTTACATAAT---TTACATA-ATAATTTAAAGTTCAAA-TTCA
1 TAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCA
*
71925174 TAACTTACATAATACATAACTTACATAATTTAAAGATCAAAATTCA
1 TAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCA
* *
71925220 TGATTTACATAATTTACATAACTTACATAAT
1 TAACTTACATAA--TACATAACTTACATAAT
71925251 ACATAACTTA
Statistics
Matches: 142, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
41 16 0.11
42 15 0.11
43 5 0.04
44 5 0.04
45 16 0.11
46 68 0.48
48 17 0.12
ACGTcount: A:0.46, C:0.14, G:0.04, T:0.36
Consensus pattern (46 bp):
TAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCA
Found at i:71925193 original size:16 final size:16
Alignment explanation
Indices: 71925172--71925281 Score: 107
Period size: 16 Copynumber: 6.9 Consensus size: 16
71925162 AGTTCAAATT
71925172 CATAACTTACATAATA
1 CATAACTTACATAATA
*
71925188 CATAACTTACATAATT
1 CATAACTTACATAATA
* ** * *
71925204 TA-AAGAT-CAAAATT
1 CATAACTTACATAATA
* *
71925218 CATGATTTACATAATTTA
1 CATAACTTACATAA--TA
71925236 CATAACTTACATAATA
1 CATAACTTACATAATA
71925252 CATAACTTACATAATA
1 CATAACTTACATAATA
*
71925268 CATGACTTACATAA
1 CATAACTTACATAA
71925282 CTTAATTATA
Statistics
Matches: 76, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
14 7 0.09
15 5 0.07
16 51 0.67
18 13 0.17
ACGTcount: A:0.47, C:0.16, G:0.03, T:0.34
Consensus pattern (16 bp):
CATAACTTACATAATA
Found at i:71925196 original size:87 final size:88
Alignment explanation
Indices: 71925065--71925240 Score: 291
Period size: 87 Copynumber: 2.0 Consensus size: 88
71925055 CATGACTTAC
* *
71925065 ATAATTTAAAGATCAAATTTCATAACTTACATGATACATAACTTACATAATTTAAAGACCAAATT
1 ATAATTTAAAGATCAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGACCAAAAT
71925130 TCATAAGTTACATAATTTACATA
66 TCATAAGTTACATAATTTACATA
* *
71925153 ATAATTTAAAGTTCAAA-TTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAAAT
1 ATAATTTAAAGATCAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGACCAAAAT
* *
71925217 TCATGATTTACATAATTTACATA
66 TCATAAGTTACATAATTTACATA
71925240 A
1 A
71925241 CTTACATAAT
Statistics
Matches: 82, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
87 66 0.80
88 16 0.20
ACGTcount: A:0.47, C:0.13, G:0.04, T:0.36
Consensus pattern (88 bp):
ATAATTTAAAGATCAAATTTCATAACTTACATAATACATAACTTACATAATTTAAAGACCAAAAT
TCATAAGTTACATAATTTACATA
Found at i:71925278 original size:9 final size:9
Alignment explanation
Indices: 71924965--71925285 Score: 93
Period size: 9 Copynumber: 36.1 Consensus size: 9
71924955 CCAGCAATTC
*
71924965 ACATAATTT
1 ACATAACTT
*
71924974 ACATAATTT
1 ACATAACTT
*
71924983 AAATAA--T
1 ACATAACTT
71924990 ACATAACTT
1 ACATAACTT
*
71924999 ACATAATTT
1 ACATAACTT
* *
71925008 AAAGTTCAAATT
1 ACA--T-AACTT
*
71925020 TCATAACTT
1 ACATAACTT
*
71925029 ACATAATTT
1 ACATAACTT
*
71925038 ACTTAACTT
1 ACATAACTT
71925047 ACATAA--T
1 ACATAACTT
*
71925054 ACATGACTT
1 ACATAACTT
*
71925063 ACATAATTT
1 ACATAACTT
* *
71925072 AAAGATCAAATT
1 --ACAT-AACTT
*
71925084 TCATAACTT
1 ACATAACTT
*
71925093 ACATGA--T
1 ACATAACTT
71925100 ACATAACTT
1 ACATAACTT
*
71925109 ACATAATTT
1 ACATAACTT
* * *
71925118 AAAGACCAAATT
1 --ACA-TAACTT
* *
71925130 TCATAAGTT
1 ACATAACTT
*
71925139 ACATAATTT
1 ACATAACTT
*
71925148 ACATAA-TA
1 ACATAACTT
** *
71925156 ATTTAAAGTT
1 ACAT-AACTT
71925166 -CA-AA-TT
1 ACATAACTT
71925172 -CATAACTT
1 ACATAACTT
71925180 ACATAA--T
1 ACATAACTT
71925187 ACATAACTT
1 ACATAACTT
*
71925196 ACATAATTT
1 ACATAACTT
* *
71925205 AAAGATCAAAATT
1 --ACAT--AACTT
* *
71925218 -CATGATTT
1 ACATAACTT
*
71925226 ACATAATTT
1 ACATAACTT
71925235 ACATAACTT
1 ACATAACTT
71925244 ACATAA--T
1 ACATAACTT
71925251 ACATAACTT
1 ACATAACTT
71925260 ACATAA--T
1 ACATAACTT
*
71925267 ACATGACTT
1 ACATAACTT
71925276 ACATAACTT
1 ACATAACTT
71925285 A
1 A
71925286 ATTATACTTA
Statistics
Matches: 231, Mismatches: 50, Indels: 62
0.67 0.15 0.18
Matches are distributed among these distances:
6 4 0.02
7 42 0.18
8 8 0.03
9 144 0.62
10 7 0.03
11 9 0.04
12 13 0.06
13 4 0.02
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (9 bp):
ACATAACTT
Found at i:71934381 original size:31 final size:32
Alignment explanation
Indices: 71934304--71934382 Score: 90
Period size: 31 Copynumber: 2.5 Consensus size: 32
71934294 GAATTAATGT
* *
71934304 TTTTGGTTGTATTTTTTAAGCTAAATTTGTTG
1 TTTTGGTTGCATTTTATAAGCTAAATTTGTTG
* *
71934336 TTTTGGCTGCATTTTAT-A-CTATATTTGTTG
1 TTTTGGTTGCATTTTATAAGCTAAATTTGTTG
*
71934366 TATTTGGTTGGATTTTA
1 T-TTTGGTTGCATTTTA
71934383 ATGCAGGAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
30 12 0.30
31 14 0.35
32 14 0.35
ACGTcount: A:0.18, C:0.05, G:0.19, T:0.58
Consensus pattern (32 bp):
TTTTGGTTGCATTTTATAAGCTAAATTTGTTG
Found at i:71934940 original size:17 final size:18
Alignment explanation
Indices: 71934918--71934952 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
71934908 CATAACAGTC
71934918 CACATTTTCCT-TCCTTT
1 CACATTTTCCTATCCTTT
*
71934935 CACATTTTTCTATCCTTT
1 CACATTTTCCTATCCTTT
71934953 TCTACAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.14, C:0.31, G:0.00, T:0.54
Consensus pattern (18 bp):
CACATTTTCCTATCCTTT
Found at i:71937561 original size:27 final size:26
Alignment explanation
Indices: 71937513--71937572 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
71937503 GCGAGGCTGC
*
71937513 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
71937540 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
71937566 CAGATAT
1 CAGATAT
71937573 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:71937576 original size:2 final size:2
Alignment explanation
Indices: 71937569--71937606 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
71937559 ACCAGAACAG
71937569 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71937607 GTGTGTGGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71938376 original size:27 final size:27
Alignment explanation
Indices: 71938346--71938403 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
71938336 AGGGTAAATT
* *
71938346 GGTAGTCCTATCCTACAGGGGTATTTC
1 GGTAGTCCTACCCTACAAGGGTATTTC
* * *
71938373 GGTATTTCTACCCTACAATGGTATTTC
1 GGTAGTCCTACCCTACAAGGGTATTTC
71938400 GGTA
1 GGTA
71938404 ATTTTGTAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GGTAGTCCTACCCTACAAGGGTATTTC
Found at i:71938457 original size:27 final size:29
Alignment explanation
Indices: 71938427--71938490 Score: 73
Period size: 27 Copynumber: 2.3 Consensus size: 29
71938417 AAGGTAAAAC
*
71938427 GGTAATTCTATA-AAT-CAGGGGTACTTT
1 GGTAATTCTATACAATCCAGAGGTACTTT
*
71938454 GGTAATT-T-TACAATCCAGAGGTATTTT
1 GGTAATTCTATACAATCCAGAGGTACTTT
*
71938481 AGTAATTCTA
1 GGTAATTCTA
71938491 CAACTTATCC
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
25 2 0.07
26 4 0.13
27 23 0.77
28 1 0.03
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (29 bp):
GGTAATTCTATACAATCCAGAGGTACTTT
Found at i:71939100 original size:21 final size:21
Alignment explanation
Indices: 71939052--71939100 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
71939042 CGTACATGAG
*
71939052 AGAAACAAAAACAAAGAAAGAA
1 AGAAA-AAAAAAAAAGAAAGAA
* *
71939074 AAAAAAAAAAAAAAGAAAGGA
1 AGAAAAAAAAAAAAGAAAGAA
71939095 AGAAAA
1 AGAAAA
71939101 GTGTTCATCC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.82, C:0.04, G:0.14, T:0.00
Consensus pattern (21 bp):
AGAAAAAAAAAAAAGAAAGAA
Found at i:71940454 original size:40 final size:39
Alignment explanation
Indices: 71940369--71940495 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
71940359 CTGGAAATTA
* * *
71940369 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
71940407 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* * *
71940449 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
71940489 TATCCGG
1 TATCCGG
71940496 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 70 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:71948266 original size:40 final size:38
Alignment explanation
Indices: 71948181--71948292 Score: 127
Period size: 40 Copynumber: 2.8 Consensus size: 38
71948171 CTGGAAATTA
* *
71948181 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGAC
1 TATCCGGGCTAAGACCCGAAGG-AATTCGTGCAAGTGAC
*
71948219 TACATCCGGGCTAAGACCCGAAGGAATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGAATTCGTGCAAGT-G-AC
* *
71948261 TATCCGGGCTAAGACCCGAGGGCATTCGTGCA
1 TATCCGGGCTAAGACCCGAAGGAATTCGTGCA
71948293 TGGGTTATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
38 1 0.02
39 4 0.06
40 56 0.88
41 1 0.02
42 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.21
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGAATTCGTGCAAGTGAC
Found at i:71954117 original size:39 final size:39
Alignment explanation
Indices: 71954073--71954192 Score: 222
Period size: 39 Copynumber: 3.1 Consensus size: 39
71954063 AATTATGTTA
*
71954073 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
71954112 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
71954151 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
71954190 CCA
1 CCA
71954193 TTGTCTTGCT
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.23, C:0.32, G:0.24, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:71960827 original size:39 final size:39
Alignment explanation
Indices: 71960783--71960864 Score: 146
Period size: 39 Copynumber: 2.1 Consensus size: 39
71960773 AATTATGTTA
71960783 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
71960822 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
71960861 CCAG
1 CCAG
71960865 TGTCTTGCTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.23, C:0.32, G:0.24, T:0.21
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:71964636 original size:27 final size:26
Alignment explanation
Indices: 71964588--71964647 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
71964578 ACAAGGCTGC
*
71964588 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
71964615 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
71964641 CATATAT
1 CAGATAT
71964648 ATATGGGGCA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:71964693 original size:69 final size:67
Alignment explanation
Indices: 71964616--71964750 Score: 162
Period size: 67 Copynumber: 2.0 Consensus size: 67
71964606 CACCAGATAC
* * * * *
71964616 AGATATTGTGGCTAGGCCACCAGAACATATATATATGGGGCAAAGCCACTAGATTGCAGCGAGGC
1 AGATATTGTGACGAAGCCACCAGAAC--AGATATATGGGGCAAAGCCACCAGATTGCAGCGAGGC
71964681 TGCT
64 TGCT
* * * * *
71964685 AGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCTGCGAGGCTG
1 AGATATTGTGACGAAGCCACCAGAACAGATATATGGGGCAAAGCCACCAGATTGCAGCGAGGCTG
71964750 C
66 C
71964751 CAGAACGCTT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
67 34 0.61
69 22 0.39
ACGTcount: A:0.30, C:0.21, G:0.29, T:0.21
Consensus pattern (67 bp):
AGATATTGTGACGAAGCCACCAGAACAGATATATGGGGCAAAGCCACCAGATTGCAGCGAGGCTG
CT
Found at i:71964732 original size:27 final size:26
Alignment explanation
Indices: 71964685--71964735 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
71964675 CGAGGCTGCT
*
71964685 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
71964711 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
71964736 TTGCTGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:71965802 original size:27 final size:26
Alignment explanation
Indices: 71965754--71965813 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
71965744 ACAAGGCTGC
*
71965754 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
71965781 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
71965807 CATATAT
1 CAGATAT
71965814 ATATGGGGCA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:71965859 original size:69 final size:67
Alignment explanation
Indices: 71965782--71965912 Score: 163
Period size: 67 Copynumber: 1.9 Consensus size: 67
71965772 CACCAGATAC
* * * *
71965782 AGATATTGTGGCTAGGCCACCAGAACATATATATATGGGGCAAAGCCACCAGATTGCAACGAGGC
1 AGATATTGTGACGAAGCCACCAGAAC--AGATATATGGGGCAAAGCCACCAGATTGCAACGAGGC
71965847 TGCT
64 TGCT
* * * * *
71965851 AGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGG
1 AGATATTGTGACGAAGCCACCAGAACAGATATATGGGGCAAAGCCACCAGATTGCAACGAGG
71965913 TTGCCAGAAC
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
67 31 0.58
69 22 0.42
ACGTcount: A:0.32, C:0.21, G:0.28, T:0.19
Consensus pattern (67 bp):
AGATATTGTGACGAAGCCACCAGAACAGATATATGGGGCAAAGCCACCAGATTGCAACGAGGCTG
CT
Found at i:71965898 original size:27 final size:26
Alignment explanation
Indices: 71965851--71965901 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
71965841 CGAGGCTGCT
*
71965851 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
71965877 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
71965902 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:71966434 original size:34 final size:34
Alignment explanation
Indices: 71966391--71966458 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
71966381 ACGATTGATG
71966391 ACGATATCTCCCACGCGATAATCCTACAATCGAT
1 ACGATATCTCCCACGCGATAATCCTACAATCGAT
*
71966425 ACGATATCTCCCACGCGATAATCCTACTATCGAT
1 ACGATATCTCCCACGCGATAATCCTACAATCGAT
71966459 CACTAACACA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.31, C:0.32, G:0.12, T:0.25
Consensus pattern (34 bp):
ACGATATCTCCCACGCGATAATCCTACAATCGAT
Found at i:71966659 original size:27 final size:27
Alignment explanation
Indices: 71966629--71966728 Score: 83
Period size: 27 Copynumber: 3.7 Consensus size: 27
71966619 TTCTACCCTA
*
71966629 CAAGGGTATTTTGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
**** *
71966656 CAAGGGTAAAGCGGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
*** * * *
71966683 TGGGGGTACTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
*
71966710 CAGGGGTATTTTGGTAATT
1 CAAGGGTATTTTGGTAATT
71966729 CTACAACTTA
Statistics
Matches: 54, Mismatches: 19, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.37
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:71968123 original size:43 final size:43
Alignment explanation
Indices: 71968033--71968145 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 43
71968023 TGAGATTACA
* * * *
71968033 TGTAAGACCATGTCTGGGACATTGGCATCGTTAATTAGTTACG
1 TGTAAGACCATATCTGGGACAATGGCATCGATAATTAGTAACG
* *
71968076 TGTAAGACCCTATCTGGGACAATGGCATCGAT-ATGT-GATAACT
1 TGTAAGACCATATCTGGGACAATGGCATCGATAAT-TAG-TAACG
*
71968119 TGTAAGACCATATCTGGGA-TATGGCAT
1 TGTAAGACCATATCTGGGACAATGGCAT
71968146 TGTACGAGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 10 0.17
43 50 0.83
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGACAATGGCATCGATAATTAGTAACG
Found at i:71968984 original size:22 final size:22
Alignment explanation
Indices: 71968956--71968999 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
71968946 TAATTGATGA
71968956 TAGATGGCATGATATATGTATG
1 TAGATGGCATGATATATGTATG
71968978 TAGATGGCATGATATATGTATG
1 TAGATGGCATGATATATGTATG
71969000 AATTAGCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.05, G:0.27, T:0.36
Consensus pattern (22 bp):
TAGATGGCATGATATATGTATG
Found at i:71973883 original size:40 final size:40
Alignment explanation
Indices: 71973817--71973983 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
71973807 AAATTGAATG
* * *
71973817 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
71973856 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
71973896 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
71973936 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
71973976 ATATCCGG
1 ATATCCGG
71973984 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:71981892 original size:40 final size:40
Alignment explanation
Indices: 71981826--71981992 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
71981816 AAATTGAATG
* * *
71981826 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
71981865 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
71981905 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
71981945 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
71981985 ATATCCGG
1 ATATCCGG
71981993 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:71987207 original size:59 final size:59
Alignment explanation
Indices: 71987135--71987334 Score: 134
Period size: 59 Copynumber: 3.3 Consensus size: 59
71987125 ATTATGCTAG
* * *
71987135 TGATATGTTTGTGTTTGAGCCTTAGTAACGAAAATGAAATATGGATGTGTAATGATTAT
1 TGATATATGTGTGTATGAGCCTTAGTAACGAAAATGAAATATGGATGTGTAATGATTAT
** * * * *** *** * * * * *
71987194 TGATATATGTGTGTATGAGTATTTG-AATGGTACCCGGGCTAAGTCCGAAG-GCAATTATGCTAG
1 TGATATATGTGTGTATGAGCCTTAGTAA-CGAAAATGAAAT-A-T-GGATGTGTAATGAT--TAT
* * *
71987257 TGATATGTTTGTGTTTGAGCCTTAGTAACGAAAATGAAATATGGATGTGTAATGATTAT
1 TGATATATGTGTGTATGAGCCTTAGTAACGAAAATGAAATATGGATGTGTAATGATTAT
71987316 TGATATATGTGTGTATGAG
1 TGATATATGTGTGTATGAG
71987335 TATTTGAATG
Statistics
Matches: 92, Mismatches: 41, Indels: 16
0.62 0.28 0.11
Matches are distributed among these distances:
58 2 0.02
59 41 0.45
60 4 0.04
61 14 0.15
62 4 0.04
63 25 0.27
64 2 0.02
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (59 bp):
TGATATATGTGTGTATGAGCCTTAGTAACGAAAATGAAATATGGATGTGTAATGATTAT
Found at i:71987457 original size:123 final size:123
Alignment explanation
Indices: 71987043--71987503 Score: 834
Period size: 123 Copynumber: 3.8 Consensus size: 123
71987033 GAATTATGTG
*
71987043 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
71987108 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
71987166 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
71987231 GCTAAGT-CCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
71987288 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
71987353 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
* * * * *
71987411 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
71987476 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
71987504 AATTATATCC
Statistics
Matches: 328, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
122 122 0.37
123 206 0.63
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
Found at i:71987475 original size:245 final size:246
Alignment explanation
Indices: 71987043--71987503 Score: 834
Period size: 245 Copynumber: 1.9 Consensus size: 246
71987033 GAATTATGTG
71987043 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
71987108 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGAAAATGAA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGAAAATGAA
* * * *
71987173 ATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGT
131 ATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATGATACCCGGGCTAAGT
*
71987238 -CCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
196 CCCGAAGACAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
*
71987288 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
71987353 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGAAAATGAA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGAAAATGAA
*
71987418 ATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGGGCTAAGT
131 ATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATGATACCCGGGCTAAGT
*
71987483 CCCGAAGACATTTATGCTAGT
196 CCCGAAGACAATTATGCTAGT
71987504 AATTATATCC
Statistics
Matches: 206, Mismatches: 9, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
245 188 0.91
246 18 0.09
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (246 bp):
AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGAAAATGAA
ATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATGATACCCGGGCTAAGT
CCCGAAGACAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
Found at i:71987669 original size:40 final size:40
Alignment explanation
Indices: 71987472--71987675 Score: 237
Period size: 40 Copynumber: 5.1 Consensus size: 40
71987462 TGAATGATAC
* * * * **
71987472 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * * **
71987512 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* *
71987552 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* *
71987592 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * **
71987632 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
71987672 CCGG
1 CCGG
71987676 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
Found at i:71994763 original size:64 final size:64
Alignment explanation
Indices: 71994686--71994878 Score: 150
Period size: 64 Copynumber: 3.1 Consensus size: 64
71994676 TAATGATTAT
71994686 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
* * * ** * *** * *** * * *
71994750 TGATATGTTTGTGTTTGAG-CCTT--A--GTA-ACGAAAATGAAATATGGATGTGTAATGAT--T
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCG-GGCT-AAGTCCCGAAG-GCAATTATGCT
*
71994807 AT
63 AG
71994809 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
71994873 TGATAT
1 TGATAT
71994879 GTCTGTGTTC
Statistics
Matches: 84, Mismatches: 34, Indels: 22
0.60 0.24 0.16
Matches are distributed among these distances:
58 2 0.02
59 22 0.26
60 8 0.10
61 7 0.08
62 7 0.08
63 8 0.10
64 28 0.33
65 2 0.02
ACGTcount: A:0.28, C:0.11, G:0.26, T:0.34
Consensus pattern (64 bp):
TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
Found at i:71994868 original size:123 final size:123
Alignment explanation
Indices: 71994536--71994996 Score: 825
Period size: 123 Copynumber: 3.8 Consensus size: 123
71994526 GAATTATGTG
*
71994536 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
71994601 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAAC-A
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
71994658 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
71994723 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
71994781 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
71994846 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTCTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
* * * * *
71994904 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
71994969 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
71994997 AATTATAGCC
Statistics
Matches: 328, Mismatches: 10, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
122 120 0.37
123 208 0.63
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
Found at i:71995020 original size:40 final size:40
Alignment explanation
Indices: 71994965--71995208 Score: 292
Period size: 40 Copynumber: 6.1 Consensus size: 40
71994955 TGAATGATAC
* * * * ** *
71994965 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
71995005 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
71995045 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
71995085 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
71995125 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
71995165 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
71995205 CCGG
1 CCGG
71995209 TTGTATTCCG
Statistics
Matches: 181, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 179 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:71998235 original size:27 final size:26
Alignment explanation
Indices: 71998188--71998238 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
71998178 CGAGGCTGCT
*
71998188 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
71998214 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
71998239 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:71998919 original size:27 final size:27
Alignment explanation
Indices: 71998880--71998948 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
71998870 TTTACCCTCC
** *
71998880 AAGGGTAAATCGGTAGTCCTACCCTAC
1 AAGGGTATTTCGGTAGTCCTACCCTAA
* * **
71998907 AGGGGTATTTCGGTATTTTTACCCTAA
1 AAGGGTATTTCGGTAGTCCTACCCTAA
71998934 AAGGGTATTTCGGTA
1 AAGGGTATTTCGGTA
71998949 ATTTTGTAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (27 bp):
AAGGGTATTTCGGTAGTCCTACCCTAA
Done.