Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 233 of 410
Found at i:71998953 original size:27 final size:27
Alignment explanation
Indices: 71998899--71998953 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
71998889 TCGGTAGTCC
* * *
71998899 TACCCTACAGGGGTATTTCGGTATTTT
1 TACCCTAAAAGGGTATTTCGGTAATTT
71998926 TACCCTAAAAGGGTATTTCGGTAATTT
1 TACCCTAAAAGGGTATTTCGGTAATTT
71998953 T
1 T
71998954 GTAAATCGAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (27 bp):
TACCCTAAAAGGGTATTTCGGTAATTT
Found at i:71998965 original size:27 final size:27
Alignment explanation
Indices: 71998935--71999007 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
71998925 TTACCCTAAA
*
71998935 AGGGTATTTCGGTAATTTTGTAAATCG
1 AGGGTAATTCGGTAATTTTGTAAATCG
** *
71998962 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAATTCGGTAATTTTGTAAATCG
* *
71998989 GGGGTACCTT-GGTAATTTT
1 AGGGTA-ATTCGGTAATTTT
71999008 ACAAACCAGG
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.27, C:0.10, G:0.27, T:0.36
Consensus pattern (27 bp):
AGGGTAATTCGGTAATTTTGTAAATCG
Found at i:72008294 original size:27 final size:27
Alignment explanation
Indices: 72008246--72008299 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
72008236 AGGTACAACC
* * *
72008246 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTAAATT
**
72008273 CATGTAACAATAATTTGCCATTAAATT
1 CATGTAACAATAATTTAACATTAAATT
72008300 TCACATGACA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTAAATT
Found at i:72012797 original size:24 final size:24
Alignment explanation
Indices: 72012770--72012818 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
72012760 GAAATAAAAG
72012770 AAAAGTTAAAATGGCCTTATTACA
1 AAAAGTTAAAATGGCCTTATTACA
72012794 AAAAGTTAAAATGGCCTTATTACA
1 AAAAGTTAAAATGGCCTTATTACA
72012818 A
1 A
72012819 CCCAAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29
Consensus pattern (24 bp):
AAAAGTTAAAATGGCCTTATTACA
Found at i:72013121 original size:31 final size:31
Alignment explanation
Indices: 72013080--72013143 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
72013070 CCTTTTCATA
*
72013080 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
72013111 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
72013142 TT
1 TT
72013144 ACCGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:72013389 original size:24 final size:24
Alignment explanation
Indices: 72013337--72013526 Score: 278
Period size: 24 Copynumber: 8.0 Consensus size: 24
72013327 GCTTTATCAT
*
72013337 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
72013362 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
72013386 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
72013409 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
72013433 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
72013457 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
72013481 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
72013504 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72013527 TCACTTCCTC
Statistics
Matches: 153, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
23 43 0.28
24 98 0.64
25 12 0.08
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:72013413 original size:47 final size:48
Alignment explanation
Indices: 72013336--72013527 Score: 291
Period size: 47 Copynumber: 4.0 Consensus size: 48
72013326 TGCTTTATCA
* *
72013336 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
72013385 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
72013432 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
72013480 GATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
72013527 T
1 T
72013528 CACTTCCTCC
Statistics
Matches: 133, Mismatches: 8, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
47 70 0.53
48 50 0.38
49 13 0.10
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:72013437 original size:71 final size:72
Alignment explanation
Indices: 72013337--72013527 Score: 289
Period size: 71 Copynumber: 2.7 Consensus size: 72
72013327 GCTTTATCAT
* *
72013337 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAA
72013401 GCCC-TTTA
64 GCCCTTTTA
* * *
72013409 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
*
72013474 CCTTTTG
66 CCTTTTA
72013481 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTT
72013528 CACTTCCTCC
Statistics
Matches: 109, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
71 76 0.70
72 33 0.30
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
CCTTTTA
Found at i:72015338 original size:29 final size:29
Alignment explanation
Indices: 72015176--72015338 Score: 177
Period size: 29 Copynumber: 5.6 Consensus size: 29
72015166 GTGACAAGAT
* * *
72015176 TGGCACTAAGTGTGCGGGCTTGGAA-GGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATTGTA
* * *
72015205 TGGCACTAAGTGTGCGGGCTTGGAA-GGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATTGTA
* *
72015234 TGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAATTGTA
* * *
72015263 TGGCACTAAGTGTGCAAACTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAATTGTA
* *
72015292 TGGCACTATGTGTGCGAGCTTAAATTGCA
1 TGGCACTAAGTGTGCGAGCTTAAATTGTA
72015321 TGGCACTAAGTGTGCGAG
1 TGGCACTAAGTGTGCGAG
72015339 ATCGTTTATT
Statistics
Matches: 121, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
28 2 0.02
29 119 0.98
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTAAATTGTA
Found at i:72016845 original size:9 final size:9
Alignment explanation
Indices: 72016828--72016885 Score: 53
Period size: 9 Copynumber: 6.0 Consensus size: 9
72016818 GGGGTGTTAC
72016828 ACATATCAT
1 ACATATCAT
*
72016837 ACATGTCATGT
1 ACATATCA--T
*
72016848 GCATATCAT
1 ACATATCAT
72016857 ACATATCATGT
1 ACATATCA--T
*
72016868 GCATATCAT
1 ACATATCAT
72016877 ACATATCAT
1 ACATATCAT
72016886 GTTTATCAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
9 24 0.62
11 15 0.38
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (9 bp):
ACATATCAT
Found at i:72016854 original size:20 final size:20
Alignment explanation
Indices: 72016829--72016887 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
72016819 GGGTGTTACA
*
72016829 CATATCATACATGTCATGTG
1 CATATCATACATATCATGTG
72016849 CATATCATACATATCATGTG
1 CATATCATACATATCATGTG
72016869 CATATCATACATATCATGT
1 CATATCATACATATCATGT
72016888 TTATCAAAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
CATATCATACATATCATGTG
Found at i:72016969 original size:25 final size:25
Alignment explanation
Indices: 72016923--72016970 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
72016913 CATATTAAAC
* * * *
72016923 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
72016948 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
72016971 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:72018225 original size:27 final size:27
Alignment explanation
Indices: 72018205--72018651 Score: 577
Period size: 27 Copynumber: 16.7 Consensus size: 27
72018195 AGGGTATTTT
*
72018205 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72018232 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72018259 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72018286 GGTAATTATGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72018313 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72018340 -GATAATTATGTAAATCG-GGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
72018366 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* *
72018393 -GTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
72018419 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
72018446 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
72018473 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72018500 GGTAATTCT-TAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72018526 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72018553 AATAATTCTGTAAAT-GAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72018579 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
72018606 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
72018633 GGTAATTCTGTAAATCGAG
1 AGTAATTCTGTAAATCGAG
72018652 AGTACTTTGG
Statistics
Matches: 372, Mismatches: 36, Indels: 24
0.86 0.08 0.06
Matches are distributed among these distances:
26 91 0.24
27 279 0.75
28 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:72018550 original size:187 final size:187
Alignment explanation
Indices: 72018206--72018680 Score: 688
Period size: 187 Copynumber: 2.5 Consensus size: 187
72018196 GGGTATTTTA
* * * * *
72018206 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAA-TCAAGGGTAAAACAGTAATTCTAT
1 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACT-GAGGGTAAAACGGTAATTCTGT
* **
72018270 AAATCGAGGGTAAAATGGTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
65 AAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
* *** *
72018335 AAAACGATAATTATGTAAATCGGGGTAAAATGGTAATTATGTAAATTAGGGGTAAAAC-
130 AAAACGATAATTATGTAAATCAGGGTAAAACAATAATTATGTAAATGA-GGGTAAAACG
*
72018393 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
*
72018458 AATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCT-TAAATCGAGGGTA
66 AATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
* *
72018522 AAAC-AGTAATTCTGTAAATCAAGGGTAAAACAATAATTCTGTAAATGAGGGTAAAACG
131 AAACGA-TAATTATGTAAATC-AGGGTAAAACAATAATTATGTAAATGAGGGTAAAACG
72018580 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
* *** *
72018645 AATCGAGAGTACTTTGGTAATTTTACAAGTCGAGGG
66 AATCGAGGGTAAAATGGTAATTTTACAAATCGAGGG
72018681 CATTTCAGTA
Statistics
Matches: 260, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
185 1 0.00
186 39 0.15
187 219 0.84
188 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (187 bp):
GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
AATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
AAACGATAATTATGTAAATCAGGGTAAAACAATAATTATGTAAATGAGGGTAAAACG
Found at i:72018666 original size:160 final size:160
Alignment explanation
Indices: 72018205--72018651 Score: 634
Period size: 160 Copynumber: 2.8 Consensus size: 160
72018195 AGGGTATTTT
* * * *
72018205 AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTAT
1 AGTAATTATGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGT
*
72018270 AAATCGAGGGTAAAATGGTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
66 AAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
* *
72018335 AAAACGATAATTATGTAAATCG-GGGTAAAAT
131 AAAACGGTAATT-T-TAAATCGAGGGTAAAAC
* * * * *
72018366 GGTAATTATGTAAATTAGGGGTAAAAC-GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGT
1 AGTAATTATGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGT
* * **
72018430 AAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGG
66 AAATC-GAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGG
72018494 TAAAACGGTAATTCTTAAATCGAGGGTAAAAC
130 TAAAACGGTAATT-TTAAATCGAGGGTAAAAC
* * *
72018526 AGTAATTCTGTAAATCAAGGGTAAAACAATAATTCTGTAAAT-GAGGGTAAAACGGTAATTCTGT
1 AGTAATTATGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGT
*
72018590 AAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAG
66 AAATCGAGGGTAAAATGGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAG
72018652 AGTACTTTGG
Statistics
Matches: 251, Mismatches: 30, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
159 9 0.04
160 207 0.82
161 35 0.14
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.28
Consensus pattern (160 bp):
AGTAATTATGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGT
AAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
AAAACGGTAATTTTAAATCGAGGGTAAAAC
Found at i:72021522 original size:31 final size:31
Alignment explanation
Indices: 72021481--72021544 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
72021471 CCTTTTCATA
*
72021481 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
72021512 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
72021543 TT
1 TT
72021545 ACGTAAACGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:72021788 original size:24 final size:24
Alignment explanation
Indices: 72021736--72021925 Score: 278
Period size: 24 Copynumber: 8.0 Consensus size: 24
72021726 GCTTTATCAT
*
72021736 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
72021761 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
72021785 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
72021808 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
72021832 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
72021856 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
72021880 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
72021903 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72021926 TCACTTCCTC
Statistics
Matches: 153, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
23 43 0.28
24 98 0.64
25 12 0.08
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:72021812 original size:47 final size:48
Alignment explanation
Indices: 72021735--72021926 Score: 291
Period size: 47 Copynumber: 4.0 Consensus size: 48
72021725 TGCTTTATCA
* *
72021735 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
72021784 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
72021831 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
72021879 GATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
72021926 T
1 T
72021927 CACTTCCTCC
Statistics
Matches: 133, Mismatches: 8, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
47 70 0.53
48 50 0.38
49 13 0.10
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:72021836 original size:71 final size:72
Alignment explanation
Indices: 72021736--72021926 Score: 289
Period size: 71 Copynumber: 2.7 Consensus size: 72
72021726 GCTTTATCAT
* *
72021736 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAA
72021800 GCCC-TTTA
64 GCCCTTTTA
* * *
72021808 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
*
72021873 CCTTTTG
66 CCTTTTA
72021880 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTT
72021927 CACTTCCTCC
Statistics
Matches: 109, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
71 76 0.70
72 33 0.30
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
CCTTTTA
Found at i:72022003 original size:20 final size:20
Alignment explanation
Indices: 72021980--72022022 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
72021970 GAACATCTCG
72021980 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
72022000 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
72022020 TGT
1 TGT
72022023 TTTCAAAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:72022104 original size:25 final size:25
Alignment explanation
Indices: 72022058--72022105 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
72022048 ATATATAAAC
* * * *
72022058 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
72022083 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
72022106 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:72023359 original size:27 final size:27
Alignment explanation
Indices: 72023339--72023788 Score: 552
Period size: 27 Copynumber: 16.7 Consensus size: 27
72023329 AGGGTATTTT
*
72023339 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72023366 AATAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72023393 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72023420 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72023447 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
72023474 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
72023501 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
72023528 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
72023555 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
72023582 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
72023609 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
72023636 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72023663 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72023690 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
72023717 GGTAATT-TGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
72023743 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
72023770 GGTAATTCTGTAAATCGAG
1 AGTAATTCTGTAAATCGAG
72023789 AGTACTTTGG
Statistics
Matches: 370, Mismatches: 42, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
26 26 0.07
27 340 0.92
28 4 0.01
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:72027590 original size:29 final size:29
Alignment explanation
Indices: 72027557--72027658 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
72027547 TGACGAGATC
72027557 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
72027586 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
72027615 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
72027644 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
72027659 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:72035438 original size:29 final size:29
Alignment explanation
Indices: 72035405--72035506 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
72035395 TGACGAGATC
72035405 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
72035434 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
72035463 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
72035492 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
72035507 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:72037563 original size:31 final size:31
Alignment explanation
Indices: 72037522--72037585 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
72037512 CCTTTTCATA
*
72037522 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
72037553 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
72037584 TT
1 TT
72037586 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:72037841 original size:23 final size:24
Alignment explanation
Indices: 72037777--72037941 Score: 230
Period size: 24 Copynumber: 7.0 Consensus size: 24
72037767 GCTTTATCAT
*
72037777 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
72037802 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
72037826 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
72037848 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
72037872 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
72037896 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
72037919 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72037942 TCACTTCCTC
Statistics
Matches: 127, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
22 9 0.07
23 44 0.35
24 62 0.49
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:72037918 original size:71 final size:70
Alignment explanation
Indices: 72037777--72037941 Score: 251
Period size: 71 Copynumber: 2.3 Consensus size: 70
72037767 GCTTTATCAT
* *
72037777 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGCATAAG
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGCATAAG
72037841 CCCTTTA
64 CCCTTTA
* * *
72037848 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACT-GGGCATAAGC
72037913 CCTTTA
65 CCTTTA
72037919 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72037942 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
70 37 0.43
71 50 0.57
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (70 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGCATAAGCC
CTTTA
Found at i:72038036 original size:20 final size:20
Alignment explanation
Indices: 72037996--72038076 Score: 139
Period size: 20 Copynumber: 4.2 Consensus size: 20
72037986 GAACATCTCG
72037996 TGTGCATATCATAC--ATCA
1 TGTGCATATCATACATATCA
*
72038014 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
72038034 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
72038054 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
72038074 TGT
1 TGT
72038077 TTATCAAAAT
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
18 14 0.24
20 45 0.76
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:72038050 original size:9 final size:9
Alignment explanation
Indices: 72038000--72038074 Score: 53
Period size: 9 Copynumber: 7.9 Consensus size: 9
72037990 ATCTCGTGTG
72038000 CATATCATA
1 CATATCATA
* *
72038009 CATCAT-GTG
1 CAT-ATCATA
72038018 CATATCATA
1 CATATCATA
* *
72038027 CATGTCATGTG
1 CATATCA--TA
72038038 CATATCATA
1 CATATCATA
*
72038047 CATATCATGTG
1 CATATCA--TA
72038058 CATATCATA
1 CATATCATA
72038067 CATATCAT
1 CATATCAT
72038075 GTTTATCAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
8 2 0.04
9 31 0.62
10 2 0.04
11 15 0.30
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:72038061 original size:11 final size:11
Alignment explanation
Indices: 72038010--72038065 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
72038000 CATATCATAC
72038010 ATCATGTGCAT
1 ATCATGTGCAT
*
72038021 ATCA--TACAT
1 ATCATGTGCAT
*
72038030 GTCATGTGCAT
1 ATCATGTGCAT
*
72038041 ATCA--TACAT
1 ATCATGTGCAT
72038050 ATCATGTGCAT
1 ATCATGTGCAT
72038061 ATCAT
1 ATCAT
72038066 ACATATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:72039413 original size:27 final size:27
Alignment explanation
Indices: 72039393--72039772 Score: 445
Period size: 27 Copynumber: 14.6 Consensus size: 27
72039383 AGGGTATTTT
*
72039393 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72039420 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72039447 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72039474 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72039501 GGTAATTCTGTAAATCGA-GGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72039527 A-TAATTATGTAAATC--GGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
72039551 GGTAATTATGTAAAT-TAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
72039577 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
72039604 AGTAATTCTGTAAA-CTGAGGGTAAAA-
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
72039630 GGTAATT-TGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
72039656 AGTAATTCTGTAAATC-A-GGT---A-
1 AGTAATTCTGTAAATCGAGGGTAAAAC
72039677 A-TAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
72039703 GGTAATT-TGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
72039729 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
72039756 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
72039773 GAGTACTTTG
Statistics
Matches: 306, Mismatches: 26, Indels: 42
0.82 0.07 0.11
Matches are distributed among these distances:
19 1 0.00
20 12 0.04
21 2 0.01
22 4 0.01
24 7 0.02
25 46 0.15
26 67 0.22
27 166 0.54
28 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:72039688 original size:72 final size:73
Alignment explanation
Indices: 72039606--72039742 Score: 258
Period size: 73 Copynumber: 1.9 Consensus size: 73
72039596 GGTAAAATAG
72039606 TAATTCTGTAAACTGAGGGTAAAA-GGTAATTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAA
1 TAATTCTGTAAACTGAGGGTAAAACGGTAATTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAA
72039670 TCAGGTAA
66 TCAGGTAA
*
72039678 TAATTCTGTAAACTGAGGGTAAAACGGTAATTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAA
1 TAATTCTGTAAACTGAGGGTAAAACGGTAATTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAA
72039743 CTGAGGGTAA
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
72 24 0.38
73 39 0.62
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (73 bp):
TAATTCTGTAAACTGAGGGTAAAACGGTAATTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAA
TCAGGTAA
Found at i:72042346 original size:39 final size:38
Alignment explanation
Indices: 72042292--72042368 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 38
72042282 TCAATGTATG
72042292 ATTACCTATAGATTATTTTGAGATATTTTCGATAGAGAT
1 ATTACCTATAGATTATTTTGAGATA-TTTCGATAGAGAT
72042331 ATTACCTATAGATTATTTTGAGATATTTCGATAGAGAT
1 ATTACCTATAGATTATTTTGAGATATTTCGATAGAGAT
72042369 TATAAGTTGA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
38 13 0.34
39 25 0.66
ACGTcount: A:0.34, C:0.08, G:0.16, T:0.43
Consensus pattern (38 bp):
ATTACCTATAGATTATTTTGAGATATTTCGATAGAGAT
Found at i:72045284 original size:48 final size:48
Alignment explanation
Indices: 72045213--72045508 Score: 219
Period size: 48 Copynumber: 6.3 Consensus size: 48
72045203 TGTGTGTGCT
*
72045213 AGTGTAAGACCTGTCAGGGACATGGCATCGCACCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGCACCGATAGATGAGAGCC
* * * * * *
72045261 AGTGTAAGACCTGTTTGGGACATGGCAT--CAGC-TTGAGGTG-TA-TC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGCACCGAT-AGATGAGAGCC
* * * * * * *
72045305 AGTGTAAGACCTGTCTAGGACATGGCATCG----GCTTGAGGTGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGCACCGATAGATGAGAGCC
* *
72045349 AGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATA-AGGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCG-CACCGATAGATGAGAGCC
* *
72045397 AGTGTAAGACTTGTCTGGGACATGGCATCAGC-CTCGAT-GTATG-GAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATC-GCAC-CGATAG-ATGAG-AGCC
* *
72045446 AGTGTAAGACCTGTCTGGGACATGGCATTG-A-C-TTAGATGTGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGCACCGATAGA--TGAGAGCC
72045493 AGTGTAAGACCATGTC
1 AGTGTAAGACC-TGTC
72045509 ATCGTACCCT
Statistics
Matches: 197, Mismatches: 29, Indels: 44
0.73 0.11 0.16
Matches are distributed among these distances:
42 2 0.01
43 1 0.01
44 58 0.29
45 4 0.02
46 9 0.05
47 17 0.09
48 71 0.36
49 35 0.18
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGCACCGATAGATGAGAGCC
Found at i:72045326 original size:44 final size:44
Alignment explanation
Indices: 72045260--72045473 Score: 214
Period size: 44 Copynumber: 4.7 Consensus size: 44
72045250 AGATGAGAGC
*
72045260 CAGTGTAAGACCTGTTTGGGACATGGCATCAGCTTGAGGTGTAT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAGCTTGAGGTGTAT
* * *
72045304 CAGTGTAAGACCTGTCTAGGACATGGCATCGGCTTGAGGTGTGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAGCTTGAGGTGTAT
* * * * *
72045348 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGGAG-AGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATC-A-GC--TTGAGGTGTA-T
* * * *
72045396 CAGTGTAAGACTTGTCTGGGACATGGCATCAGCCTCGATGTATGGAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAG-CTTGA-G-GT-GTA-T
72045445 CAGTGTAAGACCTGTCTGGGACATGGCAT
1 CAGTGTAAGACCTGTCTGGGACATGGCAT
72045474 TGACTTAGAT
Statistics
Matches: 139, Mismatches: 21, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
44 69 0.50
45 1 0.01
46 2 0.01
47 2 0.01
48 35 0.25
49 30 0.22
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.25
Consensus pattern (44 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCAGCTTGAGGTGTAT
Found at i:72054065 original size:41 final size:41
Alignment explanation
Indices: 72054020--72054137 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
72054010 TGAAAGATAA
72054020 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
72054061 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72054091 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72054132 ATGTAG
1 ATGTAG
72054138 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:72054076 original size:71 final size:71
Alignment explanation
Indices: 72053988--72054151 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72053978 GAGATGTATC
72053988 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72054053 AGGACA
66 AGGACA
72054059 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72054124 AGGACA
66 AGGACA
72054130 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
72054152 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:72061629 original size:41 final size:41
Alignment explanation
Indices: 72061584--72061701 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
72061574 TGAAAGATAA
72061584 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
72061625 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72061655 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72061696 ATGTAG
1 ATGTAG
72061702 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:72061640 original size:71 final size:71
Alignment explanation
Indices: 72061552--72061715 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72061542 GAGATGTATC
72061552 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72061617 AGGACA
66 AGGACA
72061623 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72061688 AGGACA
66 AGGACA
72061694 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
72061716 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:72073220 original size:30 final size:31
Alignment explanation
Indices: 72073180--72073242 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
72073170 CCTTTTCATA
72073180 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
72073211 TTTCA-ATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
72073241 TT
1 TT
72073243 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:72073512 original size:23 final size:24
Alignment explanation
Indices: 72073433--72073574 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
72073423 GCTTTATCAT
* *
72073433 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
72073458 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
72073482 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
72073505 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
72073529 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
72073552 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72073575 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 46 0.42
24 51 0.47
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:72073574 original size:47 final size:47
Alignment explanation
Indices: 72073433--72073574 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
72073423 GCTTTATCAT
* * *
72073433 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTTA
*
72073482 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
72073529 ATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTT
72073575 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
46 16 0.18
47 50 0.57
48 9 0.10
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
Found at i:72073646 original size:20 final size:20
Alignment explanation
Indices: 72073623--72073663 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
72073613 TTATGATTAC
72073623 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
72073643 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
72073663 A
1 A
72073664 CCATATTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:72073738 original size:25 final size:25
Alignment explanation
Indices: 72073706--72073753 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72073696 ATACATAAAC
* * *
72073706 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
72073731 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
72073754 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:72081301 original size:31 final size:31
Alignment explanation
Indices: 72081263--72081326 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
72081253 CCTTTTCATA
72081263 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
72081294 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
72081325 TT
1 TT
72081327 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:72081568 original size:24 final size:24
Alignment explanation
Indices: 72081517--72081682 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
72081507 GCTTTATCAT
* *
72081517 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
72081542 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
72081566 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
72081589 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
72081613 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
72081637 ATAACTGGGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTG
72081660 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72081683 TCACTTCCTC
Statistics
Matches: 133, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
23 46 0.35
24 75 0.56
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:72081596 original size:47 final size:47
Alignment explanation
Indices: 72081517--72081682 Score: 246
Period size: 47 Copynumber: 3.5 Consensus size: 47
72081507 GCTTTATCAT
* * *
72081517 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTT-G
72081566 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTG
*
72081613 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTG
72081660 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72081683 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 3, Indels: 8
0.91 0.02 0.07
Matches are distributed among these distances:
47 68 0.61
48 31 0.28
49 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTG
Found at i:72081617 original size:71 final size:71
Alignment explanation
Indices: 72081516--72081682 Score: 255
Period size: 71 Copynumber: 2.3 Consensus size: 71
72081506 TGCTTTATCA
*
72081516 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
72081580 AGCCCTTT
64 AGCCCTTT
* * **
72081588 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
72081653 CCCTTT
66 CCCTTT
*
72081659 GATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
72081683 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
71 75 0.85
72 13 0.15
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:72081757 original size:20 final size:20
Alignment explanation
Indices: 72081732--72081772 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
72081722 TTATGATTAC
72081732 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
72081752 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
72081772 A
1 A
72081773 CCATATTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:72081847 original size:25 final size:25
Alignment explanation
Indices: 72081815--72081862 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72081805 ATACATAAAC
* * *
72081815 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
72081840 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
72081863 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:72091536 original size:4 final size:4
Alignment explanation
Indices: 72091527--72091563 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
72091517 TGTAGGTGTA
72091527 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT T
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT T
72091564 AGTATAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:72092286 original size:30 final size:30
Alignment explanation
Indices: 72092247--72092336 Score: 171
Period size: 30 Copynumber: 3.0 Consensus size: 30
72092237 ATAAGGTGTG
*
72092247 CACTTCTACCCTATGATAACTTGATATAAA
1 CACTGCTACCCTATGATAACTTGATATAAA
72092277 CACTGCTACCCTATGATAACTTGATATAAA
1 CACTGCTACCCTATGATAACTTGATATAAA
72092307 CACTGCTACCCTATGATAACTTGATATAAA
1 CACTGCTACCCTATGATAACTTGATATAAA
72092337 GCCGAAGGTG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 59 1.00
ACGTcount: A:0.37, C:0.23, G:0.09, T:0.31
Consensus pattern (30 bp):
CACTGCTACCCTATGATAACTTGATATAAA
Found at i:72092687 original size:29 final size:28
Alignment explanation
Indices: 72092634--72092723 Score: 126
Period size: 29 Copynumber: 3.1 Consensus size: 28
72092624 TGAGCATGAC
* *
72092634 TATAAATGTGAATTAGGCCTGATGGGCCA
1 TATAAATGTG-ATTGGGCCTAATGGGCCA
*
72092663 TATAAATGTGACTTGGGCTTAATGGGCCA
1 TATAAATGTGA-TTGGGCCTAATGGGCCA
*
72092692 TATAAATGTGATTGGGCCTAGTGGGCCA
1 TATAAATGTGATTGGGCCTAATGGGCCA
72092720 TATA
1 TATA
72092724 CAGGTATGTG
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
28 20 0.36
29 35 0.64
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAATGGGCCA
Found at i:72093031 original size:26 final size:27
Alignment explanation
Indices: 72093002--72093055 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
72092992 AACAGTAATA
* *
72093002 AAAGG-AAAAATTACCGAAATACCCCT
1 AAAGGTAAAAATAACCAAAATACCCCT
*
72093028 AAAGGTGAAAATAACCAAAATACCCCT
1 AAAGGTAAAAATAACCAAAATACCCCT
72093055 A
1 A
72093056 GGTATTGAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.52, C:0.22, G:0.11, T:0.15
Consensus pattern (27 bp):
AAAGGTAAAAATAACCAAAATACCCCT
Found at i:72096532 original size:28 final size:28
Alignment explanation
Indices: 72096450--72096544 Score: 120
Period size: 29 Copynumber: 3.3 Consensus size: 28
72096440 TGAGCATGAC
*
72096450 TATAAATGTGAATTGGGCAT-GATGGGCCA
1 TATAAATGTG-ATTGGGCCTAG-TGGGCCA
*
72096479 TATAAATGTGACTTGGGCCTAATGGGCCA
1 TATAAATGTGA-TTGGGCCTAGTGGGCCA
*
72096508 TATAAATGTGATTGGGCCTAGTGGGTCA
1 TATAAATGTGATTGGGCCTAGTGGGCCA
*
72096536 TATACATGT
1 TATAAATGT
72096545 ATGTGAACTT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
28 24 0.41
29 35 0.59
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAGTGGGCCA
Found at i:72099165 original size:68 final size:67
Alignment explanation
Indices: 72099093--72099242 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
72099083 CATCATGTGT
* * * *
72099093 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
72099155 ATGTAG
62 ATGTAG
** * *
72099161 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
72099226 AG
66 AG
72099228 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
72099243 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:72099198 original size:64 final size:64
Alignment explanation
Indices: 72099117--72099299 Score: 192
Period size: 67 Copynumber: 2.8 Consensus size: 64
72099107 AGACATTATG
* *
72099117 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
72099181 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
72099246 AA
63 AA
* * * *
72099248 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAG
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAG
72099300 TTGAACTATA
Statistics
Matches: 97, Mismatches: 17, Indels: 11
0.78 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:72102476 original size:40 final size:40
Alignment explanation
Indices: 72102417--72102558 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
72102407 AAATTGAATG
* * *
72102417 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
72102457 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
72102497 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
72102537 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
72102559 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:72102559 original size:40 final size:39
Alignment explanation
Indices: 72102456--72102584 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
72102446 TGCTGGAAAT
* * *
72102456 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
72102496 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
72102536 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
72102576 TATATCCGG
1 TATATCCGG
72102585 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:72110464 original size:40 final size:40
Alignment explanation
Indices: 72110405--72110546 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
72110395 AAATTGAATG
* * *
72110405 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
72110445 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
72110485 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
72110525 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
72110547 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:72110547 original size:40 final size:39
Alignment explanation
Indices: 72110444--72110572 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
72110434 TGCTGGAAAT
* * *
72110444 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
72110484 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
72110524 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
72110564 TATATCCGG
1 TATATCCGG
72110573 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:72114535 original size:46 final size:46
Alignment explanation
Indices: 72114482--72114654 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
72114472 TGGTTGAGCA
* *
72114482 TCCGAACTCATTGATTTGAGTCCGAGTTCACTTATAGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATG
* * * * * *
72114528 TCCGAACTCGTTTAGTTGAGTCCGAGTT--CGT-GAGATGTAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATAGATGCAA--ATG
* *
72114573 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATG
* * *
72114621 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTA
72114655 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 56 0.55
47 26 0.25
48 2 0.02
49 2 0.02
50 6 0.06
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATG
Found at i:72114638 original size:93 final size:93
Alignment explanation
Indices: 72114479--72114649 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
72114469 GGATGGTTGA
* * * * *
72114479 GCATCCGAACTCATTGATTTGAGTCCGAGTTCACTTATAGATGCGAATGTCCGAACTCGTTTAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACGCCCGAACTCGTTGAGT
72114544 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
72114572 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACGCCCGAACTCGTTGAGT
72114637 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
72114650 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72120614 original size:2 final size:2
Alignment explanation
Indices: 72120607--72120638 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
72120597 AATGAATTTC
72120607 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72120639 GTTTTCCATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72135109 original size:19 final size:18
Alignment explanation
Indices: 72135080--72135120 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 18
72135070 TGATTACAAA
72135080 TAAAAT-AAAAATAATAAG
1 TAAAATAAAAAATAAT-AG
72135098 TAAAACTAAAAAATAATAG
1 TAAAA-TAAAAAATAATAG
72135117 TAAA
1 TAAA
72135121 CAAATACATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.24
19 7 0.33
20 9 0.43
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.22
Consensus pattern (18 bp):
TAAAATAAAAAATAATAG
Found at i:72140807 original size:18 final size:18
Alignment explanation
Indices: 72140784--72140838 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 18
72140774 GAACTTGCTT
* *
72140784 ACTGTTCACTGTTTCTGC
1 ACTGTTTACTGTTACTGC
* *
72140802 ACTGTTTACTATTACTAC
1 ACTGTTTACTGTTACTGC
72140820 ACTGTTTACTGTTACTGC
1 ACTGTTTACTGTTACTGC
72140838 A
1 A
72140839 AAAGGGCCAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.44
Consensus pattern (18 bp):
ACTGTTTACTGTTACTGC
Found at i:72153179 original size:51 final size:50
Alignment explanation
Indices: 72153123--72153300 Score: 168
Period size: 51 Copynumber: 3.5 Consensus size: 50
72153113 AACAACTTCC
* * *
72153123 TTCCCATTTCATATCCAACCTTCCTTCGCAAGACCATTTCAAATCATTATA
1 TTCCCATTACATATCCAACCTTCCTCCGCAA-ACCTTTTCAAATCATTATA
* * *
72153174 TTCCCATAACAT-TCCAACCATCATCCGCAAAACCTTTTTCAAATCATTATA
1 TTCCCATTACATATCCAACCTTCCTCCGC-AAACC-TTTTCAAATCATTATA
*
72153225 TT--CATGTAACATA-CCAACCTTCCTCCGCAAAGCCTTTCTCAAATCATTAGA
1 TTCCCAT-T-ACATATCCAACCTTCCTCCGCAAA-CCTTT-TCAAATCATTATA
* * *
72153276 TTCTCGTAACATA-CCAACCTTCCTC
1 TTCCCATTACATATCCAACCTTCCTC
72153301 TGTAAAGTCA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
49 3 0.03
50 22 0.21
51 79 0.75
53 2 0.02
ACGTcount: A:0.31, C:0.33, G:0.04, T:0.32
Consensus pattern (50 bp):
TTCCCATTACATATCCAACCTTCCTCCGCAAACCTTTTCAAATCATTATA
Found at i:72156637 original size:43 final size:43
Alignment explanation
Indices: 72156590--72156704 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 43
72156580 ATCACATATT
* * *
72156590 GATGCCATTGTCCCAGACAGGGTCTTACACGAAATC-TTATAAC
1 GATGCCAATGTCCCAGACAAGGTCTTACACGAAATCATAAT-AC
* * *
72156633 GATGCCAATGTCCTAGACAAGGTGTTACACGTAATCATAATAC
1 GATGCCAATGTCCCAGACAAGGTCTTACACGAAATCATAATAC
* *
72156676 AATGCCAACGTCCCAGACATA-GTCTTACA
1 GATGCCAATGTCCCAGACA-AGGTCTTACA
72156705 TGTAATCACA
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
43 56 0.93
44 4 0.07
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.24
Consensus pattern (43 bp):
GATGCCAATGTCCCAGACAAGGTCTTACACGAAATCATAATAC
Found at i:72162616 original size:40 final size:40
Alignment explanation
Indices: 72162508--72162717 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
72162498 CGGGATTTAA
* * * * *
72162508 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
72162548 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72162588 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72162628 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72162668 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72162708 CCGGATATAT
1 CCGGATATAT
72162718 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:72170751 original size:40 final size:40
Alignment explanation
Indices: 72170643--72170812 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
72170633 CGGGATTTAA
* * * * *
72170643 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
72170683 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72170723 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72170763 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72170803 CCGGATATAT
1 CCGGATATAT
72170813 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:72178457 original size:27 final size:26
Alignment explanation
Indices: 72178409--72178460 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
72178399 GCGAGGCTGC
*
72178409 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
72178435 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
72178461 TTGCAGCGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:72179111 original size:27 final size:27
Alignment explanation
Indices: 72179075--72179126 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
72179065 TTTACGCACG
*
72179075 AGGGGCAAAATAGTCATTTAACACCTT
1 AGGGGCAAAATAGTAATTTAACACCTT
* *
72179102 AGGGGCAAAATGGTAATTTTACACC
1 AGGGGCAAAATAGTAATTTAACACC
72179127 ATAAGGGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (27 bp):
AGGGGCAAAATAGTAATTTAACACCTT
Found at i:72179161 original size:27 final size:27
Alignment explanation
Indices: 72179142--72179281 Score: 192
Period size: 27 Copynumber: 5.2 Consensus size: 27
72179132 GGTATCTTGG
*
72179142 TAATTCTACCTTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
72179169 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
72179196 TAATTCTATCCTACAGGGGTATTTCCG-
1 TAATTCTACCCTACAGGGGTATTT-CGA
* *
72179223 TAAATCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
* * *
72179250 TAATTCTATCCTATAAGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
72179277 TAATT
1 TAATT
72179282 TTGTAAAACG
Statistics
Matches: 99, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
26 1 0.01
27 97 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:72179173 original size:54 final size:54
Alignment explanation
Indices: 72179142--72179281 Score: 221
Period size: 54 Copynumber: 2.6 Consensus size: 54
72179132 GGTATCTTGG
72179142 TAATTCTA-CCTTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTATCC-TACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAA
*
72179196 TAATTCTATCCTACAGGGGTATTTCCG-TAAATCTACCCTACAGGGGTATTTCAA
1 TAATTCTATCCTACAGGGGTATTT-CGATAATTCTACCCTACAGGGGTATTTCAA
* *
72179250 TAATTCTATCCTATAAGGGTATTTCGATAATT
1 TAATTCTATCCTACAGGGGTATTTCGATAATT
72179282 TTGTAAAACG
Statistics
Matches: 79, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
53 2 0.03
54 73 0.92
55 4 0.05
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (54 bp):
TAATTCTATCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAA
Found at i:72179357 original size:26 final size:26
Alignment explanation
Indices: 72179320--72179471 Score: 130
Period size: 27 Copynumber: 5.7 Consensus size: 26
72179310 TGTAAATTGT
72179320 GGGTATTT-AGTAATTTTACAAGT-G
1 GGGTATTTCAGTAATTTTACAAGTAG
* *
72179344 GAGGTATTTCAGTAATTTTACAGGTCG
1 G-GGTATTTCAGTAATTTTACAAGTAG
* * *
72179371 AGGGTATTTCAATAATTTCACAAATCAG
1 -GGGTATTTCAGTAATTTTACAAGT-AG
** *
72179399 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTCAGTAATTTTAC-AAGTAG
** *
72179426 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTCAGTAATTTTAC-AAGTAG
72179453 GGGTATTTTC-GTAATTTTA
1 GGGTA-TTTCAGTAATTTTA
72179472 TAAACCAAGG
Statistics
Matches: 109, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
24 1 0.01
25 7 0.06
26 14 0.13
27 79 0.72
28 8 0.07
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.40
Consensus pattern (26 bp):
GGGTATTTCAGTAATTTTACAAGTAG
Found at i:72179484 original size:27 final size:27
Alignment explanation
Indices: 72179383--72179476 Score: 145
Period size: 27 Copynumber: 3.5 Consensus size: 27
72179373 GGTATTTCAA
*
72179383 TAATTTCACAAA-TCAGGGGTATTTTGG
1 TAATTTTACAAACT-AGGGGTATTTTGG
72179410 TAATTTTACAAACTAGGGGTATTTTGG
1 TAATTTTACAAACTAGGGGTATTTTGG
*
72179437 TAATTTTACAAACTAGGGGTATTTTCG
1 TAATTTTACAAACTAGGGGTATTTTGG
*
72179464 TAATTTTATAAAC
1 TAATTTTACAAAC
72179477 CAAGGGTAGT
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
27 62 0.98
28 1 0.02
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAACTAGGGGTATTTTGG
Found at i:72186095 original size:48 final size:48
Alignment explanation
Indices: 72186033--72186695 Score: 1163
Period size: 48 Copynumber: 13.9 Consensus size: 48
72186023 TATATATGTG
*
72186033 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
72186081 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGGTATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
72186129 TGTGGTAAAGCCGAATGGCT-ATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
72186176 TGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
72186224 TGTGGTAAAGCCGAATGGCTAATGTGAAATA-GATATGAGATATGTGTA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATG-TATGAGATATGTATA
* *
72186272 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
72186320 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
72186368 TGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
72186416 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
72186464 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
72186512 TGTGGTAAAGCCGAATGGCT-ATGTGAAATA-GATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATG-TATGAGATATGTATA
* *
72186559 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
72186607 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
72186655 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
72186696 GTGTGTATAT
Statistics
Matches: 590, Mismatches: 19, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 91 0.15
48 496 0.84
49 2 0.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:72186549 original size:287 final size:287
Alignment explanation
Indices: 72186033--72186695 Score: 1238
Period size: 287 Copynumber: 2.3 Consensus size: 287
72186023 TATATATGTG
*
72186033 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
72186098 GCTAGTGTGAAATATGTATGAGGTATGTATATGTGGTAAAGCCGAATGGCTATGTGAAATATGTA
66 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTATGTGAAATATGTA
*
72186163 TGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATATGTATATGTG
131 TGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTG
*
72186228 GTAAAGCCGAATGGCTAATGTGAAATAGATATGAGATATGTGTATGTGGTAAAGCCGAATGGCTA
196 GTAAAGCCGAATGGCTAATGTGAAATAGATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
72186293 GTGTGAAATATGAATGAGATATGTATA
261 GTGTGAAATATGAATGAGATATGTATA
72186320 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
* *
72186385 GCTAATGTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
66 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-ATGTGAAATATGT
72186450 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
130 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
72186515 GGTAAAGCCGAATGGCT-ATGTGAAATAGATATGAGATATGTATATGTGGTAAAGCCGAATGGCT
195 GGTAAAGCCGAATGGCTAATGTGAAATAGATATGAGATATGTATATGTGGTAAAGCCGAATGGCT
72186579 AGTGTGAAATATGAATGAGATATGTATA
260 AGTGTGAAATATGAATGAGATATGTATA
*
72186607 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
72186672 GCTAGTGTGAAATATGTAGGAGAT
66 GCTAGTGTGAAATATGTATGAGAT
72186696 GTGTGTATAT
Statistics
Matches: 365, Mismatches: 10, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
287 271 0.74
288 94 0.26
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (287 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTATGTGAAATATGTA
TGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTG
GTAAAGCCGAATGGCTAATGTGAAATAGATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
GTGTGAAATATGAATGAGATATGTATA
Found at i:72188231 original size:40 final size:40
Alignment explanation
Indices: 72188178--72188410 Score: 370
Period size: 40 Copynumber: 6.0 Consensus size: 40
72188168 TTGAGAGTTA
*
72188178 TATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
72188218 TATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
72188258 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
72188298 TATATCC-GG----G-CCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
72188332 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
72188372 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
72188411 ATGTGCATTC
Statistics
Matches: 179, Mismatches: 8, Indels: 12
0.90 0.04 0.06
Matches are distributed among these distances:
34 31 0.17
35 3 0.02
39 3 0.02
40 142 0.79
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:72188341 original size:114 final size:114
Alignment explanation
Indices: 72188194--72188410 Score: 389
Period size: 114 Copynumber: 1.9 Consensus size: 114
72188184 CGGGCTAAGT
*
72188194 CCCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGATGTT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGATGTT
* *
72188259 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGG
66 ATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTGGTGTTATATCCGGG
*
72188308 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
1 CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGATGTT
*
72188373 ATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
66 ATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTGGTG
72188411 ATGTGCATTC
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
114 98 1.00
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.26
Consensus pattern (114 bp):
CCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGATGTT
ATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTGGTGTTATATCCGGG
Found at i:72188353 original size:74 final size:74
Alignment explanation
Indices: 72188178--72188382 Score: 329
Period size: 74 Copynumber: 2.7 Consensus size: 74
72188168 TTGAGAGTTA
* *
72188178 TATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCC-GG----G-CCCGAAGAG
72188243 CATTCGTGCTGATGT
60 CATTCGTGCTGATGT
72188258 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCCCGAAGAGCATTCG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCCCGAAGAGCATTCG
*
72188323 TGCTGGTGT
66 TGCTGATGT
72188332 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGC
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGC
72188383 TAGGTCCCGA
Statistics
Matches: 122, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
74 74 0.61
75 1 0.01
79 2 0.02
80 45 0.37
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.27
Consensus pattern (74 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCCCGAAGAGCATTCG
TGCTGATGT
Found at i:72188624 original size:25 final size:25
Alignment explanation
Indices: 72188574--72188624 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
72188564 TGTGTAACAA
* *
72188574 CAAATGAATAGGGGCACTATATGTG
1 CAAATGAATAGAGGCACTAGATGTG
*
72188599 CAAATGATTAGAGGCACTGAGA-GTG
1 CAAATGAATAGAGGCACT-AGATGTG
72188624 C
1 C
72188625 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTAGATGTG
Found at i:72191840 original size:48 final size:48
Alignment explanation
Indices: 72191778--72192394 Score: 1027
Period size: 48 Copynumber: 12.9 Consensus size: 48
72191768 TATATATGTG
*
72191778 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
72191826 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
72191874 TGTGGTAAAGCCGAATGCCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
72191922 TGTGGTAAAGCTGAATGGCTAATGTGAAATGTGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
72191970 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTGTA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * * *
72192018 TGTGGTAAAGCCGAATGGCTAGTATGAGATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
72192066 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
72192114 TGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * **
72192162 TGTGGTAAAGTCGAATGGCTAATGTGATATACATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
72192210 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
72192258 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
72192306 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
72192354 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
72192395 GTGTGTATAT
Statistics
Matches: 534, Mismatches: 35, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 534 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:72192274 original size:28 final size:28
Alignment explanation
Indices: 72192242--72192322 Score: 70
Period size: 28 Copynumber: 3.2 Consensus size: 28
72192232 TGTGAAATAT
72192242 GAATGAGATATGTATATGTGGTAAAGCC
1 GAATGAGATATGTATATGTGGTAAAGCC
* ***
72192270 GAATG-GCTA-G----TGT-G-AAATAT
1 GAATGAGATATGTATATGTGGTAAAGCC
72192290 GAATGAGATATGTATATGTGGTAAAGCC
1 GAATGAGATATGTATATGTGGTAAAGCC
72192318 GAATG
1 GAATG
72192323 GCTAGTGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 16
0.61 0.13 0.26
Matches are distributed among these distances:
20 8 0.22
21 4 0.11
22 4 0.11
26 4 0.11
27 4 0.11
28 13 0.35
ACGTcount: A:0.36, C:0.06, G:0.30, T:0.28
Consensus pattern (28 bp):
GAATGAGATATGTATATGTGGTAAAGCC
Found at i:72197384 original size:29 final size:28
Alignment explanation
Indices: 72197331--72197419 Score: 108
Period size: 28 Copynumber: 3.1 Consensus size: 28
72197321 ATTGCATGAC
* *
72197331 TATGAATGTGATTGGGTCC-GATGGGCCA
1 TATGAATGAGATTGGG-CCTAATGGGCCA
**
72197359 TATGAATTTGATTTGGGCCTAATGGGCCA
1 TATGAATGAGA-TTGGGCCTAATGGGCCA
*
72197388 TATGAATGAGATTGGGCCTAGTGGGCCA
1 TATGAATGAGATTGGGCCTAATGGGCCA
72197416 TATG
1 TATG
72197420 CATGTATGTA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
28 32 0.59
29 22 0.41
ACGTcount: A:0.24, C:0.13, G:0.33, T:0.30
Consensus pattern (28 bp):
TATGAATGAGATTGGGCCTAATGGGCCA
Found at i:72201365 original size:28 final size:28
Alignment explanation
Indices: 72201333--72201402 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
72201323 AATGAGATTG
*
72201333 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
72201361 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
*
72201389 GCAGTAAGTGTGCG
1 GCACTAAGTGTGCG
72201403 GACTTACTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 36 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.11, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:72203425 original size:93 final size:93
Alignment explanation
Indices: 72203313--72203484 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72203303 GCCCATAAGT
* *
72203313 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72203378 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
72203406 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72203471 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
72203485 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72203480 original size:46 final size:46
Alignment explanation
Indices: 72203305--72203480 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
72203295 TGTAACCCGC
* * *
72203305 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
72203351 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
72203401 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
72203444 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72203481 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:72205902 original size:29 final size:29
Alignment explanation
Indices: 72205865--72205948 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
72205855 GATAACAAGA
*
72205865 AAACC-GAATAAAGAAATCCAAGATAGAG
1 AAACCAGAATAAAGAAATCCAAGATAAAG
72205893 AAACCAGAATAAAGAAATCC-AGAATAAAG
1 AAACCAGAATAAAGAAATCCAAG-ATAAAG
* * *
72205922 AGATCCAGGATAAAGAAACCCAAGATA
1 A-AACCAGAATAAAGAAATCCAAGATA
72205949 CGATACTATG
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.15
29 20 0.42
30 19 0.40
31 2 0.04
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.11
Consensus pattern (29 bp):
AAACCAGAATAAAGAAATCCAAGATAAAG
Found at i:72205914 original size:15 final size:15
Alignment explanation
Indices: 72205861--72205939 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
72205851 CAAAGATAAC
*
72205861 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
72205875 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
72205890 GAGAAA-CCAGAATA
1 AAGAAATCCAGAATA
72205904 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
72205919 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
72205934 AAGAAA
1 AAGAAA
72205940 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
14 20 0.36
15 35 0.64
ACGTcount: A:0.59, C:0.13, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:72205948 original size:15 final size:15
Alignment explanation
Indices: 72205872--72205948 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
72205862 AGAAAACCGA
72205872 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
72205887 ATAGAGAAA-CC-AG
1 ATAAAGAAATCCAAG
72205900 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
72205915 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
72205931 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
72205946 ATA
1 ATA
72205949 CGATACTATG
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
13 2 0.04
14 10 0.19
15 39 0.75
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:72208978 original size:93 final size:93
Alignment explanation
Indices: 72208866--72209037 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72208856 GCCCATAAGT
* *
72208866 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72208931 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
72208959 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72209024 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
72209038 AATATCCAGT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72209033 original size:46 final size:46
Alignment explanation
Indices: 72208858--72209033 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
72208848 TGTAACCCGC
* * *
72208858 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
72208904 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
72208954 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
72208997 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72209034 TGCCAATATC
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:72212686 original size:40 final size:40
Alignment explanation
Indices: 72212578--72212787 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
72212568 CGGGATTTAA
* * * * *
72212578 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
72212618 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72212658 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72212698 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72212738 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72212778 CCGGATATAT
1 CCGGATATAT
72212788 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:72220819 original size:40 final size:40
Alignment explanation
Indices: 72220711--72220920 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
72220701 CGGGATTTAA
* * * * *
72220711 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
72220751 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72220791 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72220831 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72220871 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72220911 CCGGATATAT
1 CCGGATATAT
72220921 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:72224844 original size:18 final size:18
Alignment explanation
Indices: 72224821--72224863 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
72224811 ACACACACAA
72224821 AGTAAGCTTTAAAAGCTT
1 AGTAAGCTTTAAAAGCTT
72224839 AGTAAGCTTTAAAAGCTT
1 AGTAAGCTTTAAAAGCTT
72224857 AGTAAGC
1 AGTAAGC
72224864 CATATACAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.30
Consensus pattern (18 bp):
AGTAAGCTTTAAAAGCTT
Found at i:72227682 original size:31 final size:31
Alignment explanation
Indices: 72227641--72227704 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
72227631 CCTTTTCATA
*
72227641 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
72227672 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
72227703 TT
1 TT
72227705 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:72227997 original size:24 final size:24
Alignment explanation
Indices: 72227898--72228086 Score: 287
Period size: 24 Copynumber: 8.0 Consensus size: 24
72227888 ACTTTATCAT
* *
72227898 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
72227923 ATAACTGGGGCAAAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
72227946 ATAACTGGGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
72227969 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
72227993 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
72228017 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
72228041 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
72228064 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72228087 TCACTTCTCC
Statistics
Matches: 154, Mismatches: 6, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
22 3 0.02
23 58 0.38
24 81 0.53
25 12 0.08
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:72228158 original size:9 final size:9
Alignment explanation
Indices: 72228144--72228200 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
72228134 ATCTCGGGTG
72228144 CATATCATA
1 CATATCATA
*
72228153 CATATCATGTG
1 CATATCA--TA
72228164 CATATCATA
1 CATATCATA
* *
72228173 CATGTCATGTG
1 CATATCA--TA
72228184 CATATCATA
1 CATATCATA
72228193 CATATCAT
1 CATATCAT
72228201 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:72228164 original size:20 final size:20
Alignment explanation
Indices: 72228141--72228202 Score: 115
Period size: 20 Copynumber: 3.1 Consensus size: 20
72228131 AACATCTCGG
72228141 GTGCATATCATACATATCAT
1 GTGCATATCATACATATCAT
*
72228161 GTGCATATCATACATGTCAT
1 GTGCATATCATACATATCAT
72228181 GTGCATATCATACATATCAT
1 GTGCATATCATACATATCAT
72228201 GT
1 GT
72228203 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (20 bp):
GTGCATATCATACATATCAT
Found at i:72228285 original size:25 final size:25
Alignment explanation
Indices: 72228239--72228286 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
72228229 ATTTATAAAC
* * * *
72228239 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
72228264 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
72228287 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:72229550 original size:27 final size:27
Alignment explanation
Indices: 72229520--72229674 Score: 188
Period size: 27 Copynumber: 5.8 Consensus size: 27
72229510 AGGGTATTTT
* *
72229520 AGTAATTTTGTAAATCGAGTGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72229547 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72229574 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
72229601 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
72229628 GGTAATTCTGTAAATCGATGGT-AAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
72229654 GGTAATTTTACAAATCGAGGG
1 AGTAATTCTGTAAATCGAGGG
72229675 CATTTCAGTA
Statistics
Matches: 112, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
26 22 0.20
27 89 0.79
28 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:72229604 original size:81 final size:80
Alignment explanation
Indices: 72229519--72229674 Score: 215
Period size: 81 Copynumber: 1.9 Consensus size: 80
72229509 AAGGGTATTT
* *
72229519 TAGTAATTTTGTAAA-TCGAGTGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCT
1 TAGTAATTCTGTAAACT-GAGGGTAAAACAGTAATTCTGTAAATCAAGGGT-AAACAGTAATTCT
*
72229583 ATAAATCGAGGGTAAAA
64 ACAAATCGAGGGTAAAA
* * * * *
72229600 TAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGATGGTAAACGGTAATTTTAC
1 TAGTAATTCTGTAAACTGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAACAGTAATTCTAC
72229665 AAATCGAGGG
66 AAATCGAGGG
72229675 CATTTCAGTA
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
80 22 0.33
81 43 0.65
82 1 0.02
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (80 bp):
TAGTAATTCTGTAAACTGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAACAGTAATTCTAC
AAATCGAGGGTAAAA
Found at i:72232524 original size:31 final size:31
Alignment explanation
Indices: 72232483--72232546 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
72232473 CCTTTTCATA
*
72232483 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
72232514 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
72232545 TT
1 TT
72232547 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:72232790 original size:24 final size:24
Alignment explanation
Indices: 72232738--72232925 Score: 260
Period size: 24 Copynumber: 8.0 Consensus size: 24
72232728 GCTTTATCAT
* *
72232738 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
72232763 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTG
72232787 ATAACTGGGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
72232810 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
72232834 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
72232858 ATAATTGGGGCATAAG-CCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
72232881 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
72232904 ATAA-TGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72232926 TCACTTCCTC
Statistics
Matches: 149, Mismatches: 10, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
22 14 0.09
23 53 0.36
24 70 0.47
25 12 0.08
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:72232818 original size:47 final size:48
Alignment explanation
Indices: 72232737--72232926 Score: 255
Period size: 47 Copynumber: 4.0 Consensus size: 48
72232727 TGCTTTATCA
* *
72232737 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
* *
72232786 TATAACTGGGGCATAAGCCC-TTTGATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* * *
72232833 GATAACTGGGGCATAAGCCCTTTTGATAATTGGGGCATAAG-CCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
72232880 GATAACTGGGGCATAAGCCC-TTTAATAA-TGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
72232926 T
1 T
72232927 CACTTCCTCC
Statistics
Matches: 129, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
45 11 0.09
46 13 0.10
47 69 0.53
48 23 0.18
49 13 0.10
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.31
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:72232839 original size:71 final size:71
Alignment explanation
Indices: 72232738--72232926 Score: 276
Period size: 71 Copynumber: 2.7 Consensus size: 71
72232728 GCTTTATCAT
* *
72232738 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAA
72232802 GCCCTTTG
64 GCCCTTTG
* * * *
72232810 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAATTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
*
72232875 CTTTTG
66 CCTTTG
72232881 ATAACTGGGGCATAAGCCC-TTTAATAA-TGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTT
72232927 CACTTCCTCC
Statistics
Matches: 107, Mismatches: 9, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
69 18 0.17
70 7 0.07
71 70 0.65
72 12 0.11
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
CCTTTG
Found at i:72232997 original size:9 final size:9
Alignment explanation
Indices: 72232983--72233039 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
72232973 ATCTTGTGTG
72232983 CATATCATA
1 CATATCATA
*
72232992 CATATCATGTG
1 CATATCA--TA
72233003 CATATCATA
1 CATATCATA
* *
72233012 CATGTCATGTG
1 CATATCA--TA
72233023 CATATCATA
1 CATATCATA
72233032 CATATCAT
1 CATATCAT
72233040 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:72233002 original size:20 final size:20
Alignment explanation
Indices: 72232979--72233041 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
72232969 GAACATCTTG
72232979 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
72232999 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
72233019 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
72233039 TGT
1 TGT
72233042 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:72233124 original size:25 final size:25
Alignment explanation
Indices: 72233078--72233125 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
72233068 ATATATAAAC
* * * *
72233078 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
72233103 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
72233126 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:72234383 original size:27 final size:27
Alignment explanation
Indices: 72234363--72234653 Score: 336
Period size: 27 Copynumber: 10.8 Consensus size: 27
72234353 AGGGTATTTT
*
72234363 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72234390 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
72234417 AGTAATTCTATAAATCGAGTGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72234444 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72234471 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72234498 -GATAATTATGTAAATCGGGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * * *
72234525 GGTAATTATGTAAAT-TAGGGGTAAAAT
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * * *
72234552 GGTAATTCTATAAATTGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72234579 AGTAATTCTGTAAA-CTGAGGGCAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
72234606 AGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
72234633 GGTAATTTTACAAATCGAGGG
1 AGTAATTCTGTAAATCGAGGG
72234654 CATTTCAGTA
Statistics
Matches: 230, Mismatches: 28, Indels: 12
0.85 0.10 0.04
Matches are distributed among these distances:
26 1 0.00
27 226 0.98
28 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:72236134 original size:46 final size:46
Alignment explanation
Indices: 72236084--72236198 Score: 153
Period size: 46 Copynumber: 2.5 Consensus size: 46
72236074 CGAGGGCTAG
*
72236084 TGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACG-TAAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGG-CTAAGAGACGAT-AGCCAA
* * *
72236130 TGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGATAGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCTAAGAGACGATAGCCAA
72236176 TGTAAGACCATGTCTGGGACATG
1 TGTAAGA-CATGTCTGGGACATG
72236199 GCATTGACAC
Statistics
Matches: 62, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
45 2 0.03
46 44 0.71
47 16 0.26
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCTAAGAGACGATAGCCAA
Found at i:72238969 original size:93 final size:93
Alignment explanation
Indices: 72238857--72239028 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72238847 GCCCATAAGT
* *
72238857 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72238922 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
72238950 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72239015 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
72239029 AACCATCCTA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72239024 original size:46 final size:46
Alignment explanation
Indices: 72238849--72239024 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
72238839 TGTAACCCGC
* * *
72238849 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
72238895 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
72238945 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
72238988 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72239025 TGCCAACCAT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:72241435 original size:30 final size:30
Alignment explanation
Indices: 72241391--72241479 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
72241381 CAAAGATAAC
72241391 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
72241420 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
72241450 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
72241480 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:72241439 original size:15 final size:15
Alignment explanation
Indices: 72241391--72241470 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
72241381 CAAAGATAAC
*
72241391 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
72241405 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
72241420 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
72241435 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
72241450 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
72241465 AAGAAA
1 AAGAAA
72241471 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:72241479 original size:15 final size:15
Alignment explanation
Indices: 72241402--72241479 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
72241392 AGAAAACCGA
72241402 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
72241417 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
72241431 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
72241446 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
72241462 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
72241477 ATA
1 ATA
72241480 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:72244536 original size:93 final size:93
Alignment explanation
Indices: 72244424--72244595 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72244414 GCCCATAAGT
* *
72244424 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72244489 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
72244517 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72244582 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
72244596 AAATCCTAGT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72244591 original size:46 final size:46
Alignment explanation
Indices: 72244416--72244591 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
72244406 TGTAACCCGC
* * *
72244416 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
72244462 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
72244512 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
72244555 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72244592 TGCCAAATCC
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:72247161 original size:99 final size:99
Alignment explanation
Indices: 72247021--72247233 Score: 245
Period size: 99 Copynumber: 2.2 Consensus size: 99
72247011 GTATGTACAA
* * *
72247021 ATGTGATGTTATATTGAACTTGAATGTTTGGCCACATAGGT-ATGTACGTATATGATG-TATTAT
1 ATGTGATGATATATTGAACTTGAATGATTGACCACATAGGTAAT-TACGTATATGATGATA-TAT
* * *
72247084 TGGATCTTGTAT-TTTCGGGCATATAGGTAAGTATTT
64 TGAACCTTGTATATTT-GGACATATAGGTAAGTATTT
* * * ** *
72247120 ATGTGATGATATATTGAACCTTGTAT-ATTGATCATATAGGTAATTATTTATGTGATGATATATT
1 ATGTGATGATATATTGAA-CTTGAATGATTGACCACATAGGTAATTACGTATATGATGATATATT
*
72247184 GAACCTTGTATATTTGGACATATGGGTAAGTATTT
65 GAACCTTGTATATTTGGACATATAGGTAAGTATTT
72247219 ATGTGATGATATATT
1 ATGTGATGATATATT
72247234 TGATCTTGCA
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
99 84 0.87
100 13 0.13
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (99 bp):
ATGTGATGATATATTGAACTTGAATGATTGACCACATAGGTAATTACGTATATGATGATATATTG
AACCTTGTATATTTGGACATATAGGTAAGTATTT
Done.