Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 234 of 410
Found at i:72247180 original size:24 final size:24
Alignment explanation
Indices: 72247104--72247181 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
72247094 ATTTTCGGGC
*
72247104 ATATAGGTAAGTATTTATGTGATG
1 ATATAGGTAATTATTTATGTGATG
* * * *
72247128 ATATA-TTGAACCTTGTATAT-TGATC
1 ATATAGGT-AA--TTATTTATGTGATG
72247153 ATATAGGTAATTATTTATGTGATG
1 ATATAGGTAATTATTTATGTGATG
72247177 ATATA
1 ATATA
72247182 TTGAACCTTG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
23 7 0.17
24 16 0.40
25 11 0.28
26 6 0.15
ACGTcount: A:0.35, C:0.04, G:0.18, T:0.44
Consensus pattern (24 bp):
ATATAGGTAATTATTTATGTGATG
Found at i:72247247 original size:50 final size:50
Alignment explanation
Indices: 72247021--72247250 Score: 238
Period size: 50 Copynumber: 4.6 Consensus size: 50
72247011 GTATGTACAA
* * * * * * **
72247021 ATGTGATGTTATATTGAA-CTTGAATGTTTGGCCACATAGGTATGTACGT
1 ATGTGATGATATATTGAACCTTGTATATTTGGACATATAGGTAAGTATTT
* * * *
72247070 ATATGATG-TATTATTGGATCTTGTAT-TTTCGGGCATATAGGTAAGTATTT
1 ATGTGATGATA-TATTGAACCTTGTATATTT-GGACATATAGGTAAGTATTT
*
72247120 ATGTGATGATATATTGAACCTTGTATA-TT-GATCATATAGGTAATTATTT
1 ATGTGATGATATATTGAACCTTGTATATTTGGA-CATATAGGTAAGTATTT
*
72247169 ATGTGATGATATATTGAACCTTGTATATTTGGACATATGGGTAAGTATTT
1 ATGTGATGATATATTGAACCTTGTATATTTGGACATATAGGTAAGTATTT
* *
72247219 ATGTGATGATATATTTG-ATCTTGCATATTTGG
1 ATGTGATGATATA-TTGAACCTTGTATATTTGG
72247251 CCAAATGAAT
Statistics
Matches: 155, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
48 3 0.02
49 59 0.38
50 86 0.55
51 7 0.05
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.43
Consensus pattern (50 bp):
ATGTGATGATATATTGAACCTTGTATATTTGGACATATAGGTAAGTATTT
Found at i:72247862 original size:2 final size:2
Alignment explanation
Indices: 72247855--72247883 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
72247845 GCAATGAGAC
72247855 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
72247884 AGTATGAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:72249726 original size:40 final size:39
Alignment explanation
Indices: 72249615--72249766 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
72249605 TATAACATGT
* ** *
72249615 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
72249655 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
72249695 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* * *
72249735 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
72249767 CATTCAATTT
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 93 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:72249749 original size:80 final size:80
Alignment explanation
Indices: 72249615--72249766 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
72249605 TATAACATGT
* *
72249615 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
72249680 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
72249695 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
72249758 CCCGGATAT
64 CCCGGATAT
72249767 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:72255772 original size:40 final size:40
Alignment explanation
Indices: 72255727--72255856 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
72255717 CGGAATACAA
72255727 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
72255767 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
72255807 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
72255847 CCGGATATAA
1 CCGGATATAA
72255857 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:72257875 original size:11 final size:11
Alignment explanation
Indices: 72257859--72257890 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
72257849 AGTTTGAGTG
72257859 GTCAGAAAAGT
1 GTCAGAAAAGT
72257870 GTCAGAAAAGT
1 GTCAGAAAAGT
*
72257881 GTTAGAAAAG
1 GTCAGAAAAG
72257891 CTTTGATCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.47, C:0.06, G:0.28, T:0.19
Consensus pattern (11 bp):
GTCAGAAAAGT
Found at i:72261579 original size:50 final size:50
Alignment explanation
Indices: 72261420--72261582 Score: 222
Period size: 50 Copynumber: 3.3 Consensus size: 50
72261410 ATTAATGGAT
* * *
72261420 CTTGTAT-TTTCGGCCATGTAGGTAAGTATCTATGTGATGATATATTGAAC
1 CTTGTATATTT-GGACATATAGGTAAGTATTTATGTGATGATATATTGAAC
* *
72261470 CTTGTATATTCGGTCATATAGGTAAGTATTTATGTGATGATATATTGAAC
1 CTTGTATATTTGGACATATAGGTAAGTATTTATGTGATGATATATTGAAC
* *
72261520 CTTGTATATTTGGACATATGGGTAAGTATTTATGTGATGATATATTTG-AT
1 CTTGTATATTTGGACATATAGGTAAGTATTTATGTGATGATATA-TTGAAC
*
72261570 CTTGCATATTTGG
1 CTTGTATATTTGG
72261583 CCAAATGAGT
Statistics
Matches: 102, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
50 97 0.95
51 5 0.05
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (50 bp):
CTTGTATATTTGGACATATAGGTAAGTATTTATGTGATGATATATTGAAC
Found at i:72262450 original size:2 final size:2
Alignment explanation
Indices: 72262438--72262476 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
72262428 AAGTGTTTGC
*
72262438 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
72262477 ATTGTGATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:72262738 original size:33 final size:33
Alignment explanation
Indices: 72262701--72262766 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
72262691 AAATAGGTGT
72262701 ATGTGAATGGATATATGTTCTTTGATGGTTAGA
1 ATGTGAATGGATATATGTTCTTTGATGGTTAGA
72262734 ATGTGAATGGATATATGTTCTTTGATGGTTAGA
1 ATGTGAATGGATATATGTTCTTTGATGGTTAGA
72262767 CCATTCACTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.03, G:0.27, T:0.42
Consensus pattern (33 bp):
ATGTGAATGGATATATGTTCTTTGATGGTTAGA
Found at i:72264354 original size:40 final size:39
Alignment explanation
Indices: 72264286--72264491 Score: 306
Period size: 40 Copynumber: 5.2 Consensus size: 39
72264276 AACCCAAGTA
* *
72264286 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATG
*
72264325 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATG
*
72264365 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATAT-AGCACTAGCACAAATG
72264405 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
* *
72264445 CCTTCGGGACTTAGCCCGGATGTAGTCACTAGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
72264485 CCTTCGG
1 CCTTCGG
72264492 ATCTTATCCG
Statistics
Matches: 158, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 14 0.09
40 142 0.90
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATG
Found at i:72265887 original size:13 final size:13
Alignment explanation
Indices: 72265869--72265894 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72265859 ATTTTTATTT
72265869 TTAACATAAAATA
1 TTAACATAAAATA
72265882 TTAACATAAAATA
1 TTAACATAAAATA
72265895 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:72266349 original size:21 final size:21
Alignment explanation
Indices: 72266325--72266373 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
72266315 GTGGGGCACA
72266325 GGCGTGTTA-CCTTCCCACATG
1 GGCGTGTTACCCTT-CCACATG
*
72266346 GGCGTATTACCCTTCCACATG
1 GGCGTGTTACCCTTCCACATG
72266367 GGCGTGT
1 GGCGTGT
72266374 GCCCTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.14, C:0.31, G:0.27, T:0.29
Consensus pattern (21 bp):
GGCGTGTTACCCTTCCACATG
Found at i:72272107 original size:27 final size:27
Alignment explanation
Indices: 72272049--72272108 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
72272039 TTAGTTTACC
* *
72272049 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGACTTATA
* *
72272076 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGACTTATA
*
72272103 GAATTA
1 AAATTA
72272109 TCGTTTTACA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGACTTATA
Found at i:72272134 original size:27 final size:26
Alignment explanation
Indices: 72272091--72272179 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 26
72272081 ACCAAAGTAC
* * *
72272091 CCTCGATTTATAGAATTATCGTTTTA
1 CCTCGATTTACAAAATTACCGTTTTA
*
72272117 CACTCGATTTACAAAATTACCATTTTA
1 C-CTCGATTTACAAAATTACCGTTTTA
*
72272144 TCCT-TAGTTTACAAAATTACCGTTTTA
1 -CCTCGA-TTTACAAAATTACCGTTTTA
72272171 CCCTCGATT
1 -CCTCGATT
72272180 GTGAAATTAC
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
26 2 0.04
27 47 0.92
28 2 0.04
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (26 bp):
CCTCGATTTACAAAATTACCGTTTTA
Found at i:72272241 original size:27 final size:27
Alignment explanation
Indices: 72272211--72272309 Score: 80
Period size: 27 Copynumber: 3.7 Consensus size: 27
72272201 TGTAGGATAG
**
72272211 AATTACCAAAATACCAC-TGGTTTG-AGA
1 AATTACCAAAATACC-CTTAATTTGTA-A
*
72272238 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCTTAATTTGTAA
* **
72272265 AATTACCAAAATATCCC-TGATTTACAA
1 AATTACCAAAATA-CCCTTAATTTGTAA
72272292 AATTA-CAGAAATACCCTT
1 AATTACCA-AAATACCCTT
72272310 GACTTTTTTA
Statistics
Matches: 60, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
26 6 0.10
27 50 0.83
28 4 0.07
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAATTTGTAA
Found at i:72273328 original size:25 final size:24
Alignment explanation
Indices: 72273290--72273359 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
72273280 AGGAAGTGCA
*
72273290 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
* *
72273314 GAAAAGGGCTTTGCCTCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
*
72273339 AGAAAGGACTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
72273360 ATTAAAAAGG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
24 1 0.03
25 38 0.97
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:72273368 original size:24 final size:25
Alignment explanation
Indices: 72273288--72273369 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
72273278 GGAGGAAGTG
* * *
72273288 CAAAAAGGGCTCTGCCCCAGTTTAC
1 CAAAAAGGACTTTGCCCCAGTTTAT
* * *
72273313 CGAAAAGGGCTTTGCCTCAGTTTAT
1 CAAAAAGGACTTTGCCCCAGTTTAT
*
72273338 CAGAAAGGACTTTGCCCCAG-TTAT
1 CAAAAAGGACTTTGCCCCAGTTTAT
*
72273362 TAAAAAGG
1 CAAAAAGG
72273370 CTAGGCCTCC
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
24 10 0.21
25 37 0.79
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.24
Consensus pattern (25 bp):
CAAAAAGGACTTTGCCCCAGTTTAT
Found at i:72273553 original size:42 final size:42
Alignment explanation
Indices: 72273506--72273597 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
72273496 TAGTCTCCCC
* ** *
72273506 AAATGGGCTTGAATACATTCATTGGTATTTCATGAGATATTG
1 AAATGGGCTTGAATACATCCATTGACATTACATGAGATATTG
* *
72273548 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGAATACATCCATTGACATTACATGAGATATTG
72273590 AAATGGGC
1 AAATGGGC
72273598 CTATGGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGAATACATCCATTGACATTACATGAGATATTG
Found at i:72273663 original size:31 final size:31
Alignment explanation
Indices: 72273621--72273717 Score: 151
Period size: 31 Copynumber: 3.2 Consensus size: 31
72273611 CGTATACAGT
72273621 AAAA-TCTTCGGCCCAGTGATATGATTTATG
1 AAAAGTCTTCGGCCCAGTGATATGATTTATG
* *
72273651 AAAAGTCTTCGGCCCGGCGATATGATTTATG
1 AAAAGTCTTCGGCCCAGTGATATGATTTATG
* *
72273682 AAAAGGCTTCGACCCAGTGATATGATTTATG
1 AAAAGTCTTCGGCCCAGTGATATGATTTATG
72273713 AAAAG
1 AAAAG
72273718 GTTTGGCCTA
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
30 4 0.07
31 56 0.93
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (31 bp):
AAAAGTCTTCGGCCCAGTGATATGATTTATG
Found at i:72275537 original size:40 final size:40
Alignment explanation
Indices: 72275478--72275646 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
72275468 CGGGACTTTA
* * *
72275478 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
72275518 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
72275558 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
72275598 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
72275638 CCCGGATAT
1 CCCGGATAT
72275647 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:72279945 original size:40 final size:40
Alignment explanation
Indices: 72279837--72280046 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
72279827 CGGGATTTAA
* * * * *
72279837 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
72279877 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72279917 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72279957 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72279997 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72280037 CCGGATATAT
1 CCGGATATAT
72280047 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:72291062 original size:37 final size:38
Alignment explanation
Indices: 72291012--72291166 Score: 278
Period size: 37 Copynumber: 4.1 Consensus size: 38
72291002 ATTACCAGCA
*
72291012 CCAGCACGAAGCCTGCGGGCTTTAGCCC-GATACATTT
1 CCAGCACGAAGCCTGCGGACTTTAGCCCGGATACATTT
72291049 CCAGCACGAAGCCTG-GGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGACTTTAGCCCGGATACATTT
72291086 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGC-GGACTTTAGCCCGGATACATTT
72291125 CCAGCACGAAGCCTGCGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGACTTTAGCCCGGATACATTT
72291163 CCAG
1 CCAG
72291167 TGTCTTGCAT
Statistics
Matches: 114, Mismatches: 1, Indels: 5
0.95 0.01 0.04
Matches are distributed among these distances:
36 11 0.10
37 39 0.34
38 26 0.23
39 38 0.33
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.21
Consensus pattern (38 bp):
CCAGCACGAAGCCTGCGGACTTTAGCCCGGATACATTT
Found at i:72291117 original size:39 final size:39
Alignment explanation
Indices: 72291012--72291166 Score: 275
Period size: 39 Copynumber: 4.1 Consensus size: 39
72291002 ATTACCAGCA
72291012 CCAGCACGAAGCCTGCGGG-CTTTAGCCC-GATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
72291049 CCAGCACGAAGCCT--GGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
72291086 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
72291125 CCAGCACGAAGCCTGC-GGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
72291163 CCAG
1 CCAG
72291167 TGTCTTGCAT
Statistics
Matches: 114, Mismatches: 0, Indels: 7
0.94 0.00 0.06
Matches are distributed among these distances:
35 3 0.03
36 9 0.08
37 37 0.32
38 26 0.23
39 39 0.34
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:72296744 original size:38 final size:39
Alignment explanation
Indices: 72296650--72296805 Score: 278
Period size: 39 Copynumber: 4.0 Consensus size: 39
72296640 ATTACCAGCA
* *
72296650 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGACACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
72296689 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
72296728 CCA-CACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
72296766 CCAGCATGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
72296805 C
1 C
72296806 AGTGTCTTGC
Statistics
Matches: 113, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
38 38 0.34
39 75 0.66
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:72296781 original size:77 final size:77
Alignment explanation
Indices: 72296654--72296805 Score: 277
Period size: 77 Copynumber: 2.0 Consensus size: 77
72296644 CCAGCACCAG
*
72296654 CACGAAGCCTGCGGGTCTTTAGCCCGGACACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCG
1 CACGAAGCCTGCGGGACTTTAGCCCGGACACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCG
72296719 GATACATTTCCA
66 GATACATTTCCA
* *
72296731 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCATGAAGCCTGCGGGACTTTAGCCCG
1 CACGAAGCCTGCGGGACTTTAGCCCGGACACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCG
72296796 GATACATTTC
66 GATACATTTC
72296806 AGTGTCTTGC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 72 1.00
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.22
Consensus pattern (77 bp):
CACGAAGCCTGCGGGACTTTAGCCCGGACACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCG
GATACATTTCCA
Found at i:72307082 original size:24 final size:24
Alignment explanation
Indices: 72307055--72307216 Score: 281
Period size: 24 Copynumber: 6.8 Consensus size: 24
72307045 GCTGGAAATA
72307055 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
72307079 TATGGCACTATGTGTGCGATCCAC
1 TATGGCACTATGTGTGCGATTTAC
72307103 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
72307127 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
72307151 TATGGCACTATGTGTG-GATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
72307174 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTAC
72307198 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
72307217 ACATAATAAG
Statistics
Matches: 131, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
23 23 0.18
24 108 0.82
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:72307230 original size:95 final size:96
Alignment explanation
Indices: 72307055--72307238 Score: 291
Period size: 95 Copynumber: 1.9 Consensus size: 96
72307045 GCTGGAAATA
72307055 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTGC
1 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTGC
** * *
72307120 GATTTACTATGGCACTATGTGTGCGATTTAC
66 GACATAATATAGCACTATGTGTGCGATTTAC
* *
72307151 TATGGCACTATGTGTG-GATTTACTATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTGC
1 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTGC
72307215 GAACATAATA-AGCACTATGTGTGC
66 G-ACATAATATAGCACTATGTGTGC
72307239 CACTTCGGTT
Statistics
Matches: 81, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
95 60 0.74
96 21 0.26
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (96 bp):
TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTGC
GACATAATATAGCACTATGTGTGCGATTTAC
Found at i:72312417 original size:29 final size:29
Alignment explanation
Indices: 72312376--72312477 Score: 134
Period size: 29 Copynumber: 3.6 Consensus size: 29
72312366 CCTCCGAACT
** * * *
72312376 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
72312405 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
72312434 CGCACACTTAGTGCCATATATTT-CAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
72312462 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
72312478 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
28 21 0.33
29 43 0.67
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:72320429 original size:29 final size:29
Alignment explanation
Indices: 72320396--72320498 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
72320386 CCTCCGAACT
** * * *
72320396 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
72320425 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
72320454 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
72320483 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
72320499 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:72327666 original size:40 final size:40
Alignment explanation
Indices: 72327607--72327775 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
72327597 CGGGACTTTA
* * *
72327607 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
72327647 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
72327687 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
72327727 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
72327767 CCCGGATAT
1 CCCGGATAT
72327776 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:72335768 original size:40 final size:40
Alignment explanation
Indices: 72335709--72335877 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
72335699 CGGGACTTTA
* * *
72335709 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
72335749 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
72335789 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
72335829 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
72335869 CCCGGATAT
1 CCCGGATAT
72335878 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:72337591 original size:24 final size:24
Alignment explanation
Indices: 72337557--72337649 Score: 159
Period size: 24 Copynumber: 3.9 Consensus size: 24
72337547 GTCACAATCC
72337557 ACTATGGCACTATGTGTGCGATTT
1 ACTATGGCACTATGTGTGCGATTT
*
72337581 ACTATGCCACTATGTGTGCGATTT
1 ACTATGGCACTATGTGTGCGATTT
*
72337605 ACTATGGCACTATGTGTGCGATTC
1 ACTATGGCACTATGTGTGCGATTT
*
72337629 GCTATGGCACTATGTGTGCGA
1 ACTATGGCACTATGTGTGCGA
72337650 ACATAATAAG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 65 1.00
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.34
Consensus pattern (24 bp):
ACTATGGCACTATGTGTGCGATTT
Found at i:72337663 original size:48 final size:48
Alignment explanation
Indices: 72337563--72337671 Score: 139
Period size: 48 Copynumber: 2.3 Consensus size: 48
72337553 ATCCACTATG
* ** * *
72337563 GCACTATGTGTGCGATTTACTATGCCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTCACTATGCCACTATGTGTGCGACATAATATA
* *
72337611 GCACTATGTGTGCGATTCGCTATGGCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGATTCACTATGCCACTATGTGTGCG-ACATAATATA
72337659 GCACTATGTGTGC
1 GCACTATGTGTGC
72337672 CACCTTCGGT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
48 48 0.91
49 5 0.09
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (48 bp):
GCACTATGTGTGCGATTCACTATGCCACTATGTGTGCGACATAATATA
Found at i:72342503 original size:31 final size:32
Alignment explanation
Indices: 72342447--72342507 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
72342437 CGAAGTCACT
* *
72342447 AGATATAGATATTGTGGCTAGGCCACCAGAAC
1 AGATATAGATATTGTGGCGAAGCCACCAGAAC
*
72342479 AGATATATATA-TGTGGCGAAGCCACCAGA
1 AGATATAGATATTGTGGCGAAGCCACCAGA
72342508 TTGCAGCGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.62
32 10 0.38
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (32 bp):
AGATATAGATATTGTGGCGAAGCCACCAGAAC
Found at i:72346005 original size:40 final size:40
Alignment explanation
Indices: 72345883--72346066 Score: 183
Period size: 40 Copynumber: 4.6 Consensus size: 40
72345873 TATTCGAATG
* * *
72345883 ATATCCGGGCTAAGTCTCG-AGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
72345923 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
**
72345963 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCAACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * * *
72346003 ATATTCGGGCTAAGTCCCGAAGGCATTTATTCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
72346043 ACATCCGGGCTAAGACACGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
72346067 CTTGTGCAAG
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
40 102 0.89
41 13 0.11
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:72363646 original size:40 final size:40
Alignment explanation
Indices: 72363571--72363778 Score: 276
Period size: 40 Copynumber: 5.2 Consensus size: 40
72363561 TCTTCAGAAT
* ** *
72363571 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
72363610 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
72363650 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* *
72363690 TTAGCCCGAATATAACAACTCGCACAAATGCCTTCGAGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * * *
72363730 TTAGCCCGGATACAATC-ACTAGCATAAATGCCTTCGGGGC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
72363770 TTAGCCCGG
1 TTAGCCCGG
72363779 GTATCATTCA
Statistics
Matches: 149, Mismatches: 18, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
39 3 0.02
40 145 0.97
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:72366773 original size:46 final size:46
Alignment explanation
Indices: 72366720--72366895 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
72366710 TATTTGGGCA
72366720 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
72366766 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
72366813 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
72366859 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72366896 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:72366875 original size:93 final size:93
Alignment explanation
Indices: 72366716--72366887 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72366706 GGGATATTTG
* *
72366716 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
72366781 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
72366809 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
72366874 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
72366888 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:72369882 original size:15 final size:15
Alignment explanation
Indices: 72369843--72369921 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
72369833 GTATCTTGGG
*
72369843 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
72369858 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
72369873 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
72369887 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
72369902 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
72369916 TTTCTT
1 TTTCTT
72369922 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:72369906 original size:29 final size:29
Alignment explanation
Indices: 72369834--72369920 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
72369824 CATAGTATCG
* * * *
72369834 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
72369864 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
72369893 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
72369921 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:72372352 original size:46 final size:46
Alignment explanation
Indices: 72372299--72372474 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
72372289 TATTTGGGCA
72372299 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
72372345 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
72372392 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
72372438 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72372475 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:72372454 original size:93 final size:93
Alignment explanation
Indices: 72372295--72372466 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72372285 GGGATATTTG
* *
72372295 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
72372360 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
72372388 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
72372453 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
72372467 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:72378686 original size:30 final size:30
Alignment explanation
Indices: 72378637--72378698 Score: 90
Period size: 31 Copynumber: 2.1 Consensus size: 30
72378627 CCTTTTCATA
72378637 TTTCATATTCATAACACT-GGCCGAAGCCT
1 TTTCATATTCATAACACTGGGCCGAAGCCT
**
72378666 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATA-TTCATAACACTGGGCCGAAGCCT
72378697 TT
1 TT
72378699 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 7 0.24
30 9 0.31
31 13 0.45
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (30 bp):
TTTCATATTCATAACACTGGGCCGAAGCCT
Found at i:72378944 original size:23 final size:24
Alignment explanation
Indices: 72378886--72379025 Score: 175
Period size: 23 Copynumber: 6.0 Consensus size: 24
72378876 GCTTTATCAT
*
72378886 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
72378911 ATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
72378935 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
72378957 ATAACT-GGGCGTAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
**
72378980 ATAACTATGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
72379003 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72379026 GCACTTCCTC
Statistics
Matches: 103, Mismatches: 6, Indels: 13
0.84 0.05 0.11
Matches are distributed among these distances:
22 21 0.20
23 37 0.36
24 37 0.36
25 8 0.08
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:72379123 original size:20 final size:20
Alignment explanation
Indices: 72379079--72379143 Score: 103
Period size: 20 Copynumber: 3.1 Consensus size: 20
72379069 GAACATCTCG
72379079 TGTGCATATCATACATACATCA
1 TGTGCATATCATACAT--ATCA
*
72379101 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
72379121 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
72379141 TGT
1 TGT
72379144 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
20 25 0.61
22 16 0.39
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:72380406 original size:27 final size:26
Alignment explanation
Indices: 72380371--72380464 Score: 127
Period size: 27 Copynumber: 3.5 Consensus size: 26
72380361 GGGCATATTC
*
72380371 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACC-TACAGGGGCT-TTACG
*
72380398 GTCACTTTACCTTATAGGGGCTTTACG
1 GTCACTTTACC-TACAGGGGCTTTACG
72380425 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTA-CCTACAGGGGCTTTACG
72380452 GTCACTTTACCTA
1 GTCACTTTACCTA
72380465 ATAGGGGTAT
Statistics
Matches: 61, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
26 4 0.07
27 54 0.89
28 3 0.05
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.34
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGGCTTTACG
Found at i:72380494 original size:54 final size:53
Alignment explanation
Indices: 72380370--72380471 Score: 152
Period size: 54 Copynumber: 1.9 Consensus size: 53
72380360 AGGGCATATT
* * *
72380370 CGTCATTTTACCATACAGGGGTATTACGGTCACTTTACCTTATAGGGGCTTTA
1 CGTCACTTTACCCTACAGGGGTATTACGGTCACTTTACCTAATAGGGGCTTTA
72380423 CGGTCACTTTACCCTACAGGGGCT-TTACGGTCACTTTACCTAATAGGGG
1 C-GTCACTTTACCCTACAGGGG-TATTACGGTCACTTTACCTAATAGGGG
72380472 TATTTTAGTC
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
53 1 0.02
54 42 0.95
55 1 0.02
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.32
Consensus pattern (53 bp):
CGTCACTTTACCCTACAGGGGTATTACGGTCACTTTACCTAATAGGGGCTTTA
Found at i:72380620 original size:55 final size:54
Alignment explanation
Indices: 72380493--72380749 Score: 185
Period size: 54 Copynumber: 4.6 Consensus size: 54
72380483 TTTCATCCTA
* * * * * * *
72380493 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTAAAAATCAAGGGTATTTCTGTAATTTTGTAAAT
* * * * *
72380547 CAATGGTATTTCT-ATAATTTTTAGAAGTCAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTAAAAATCAAGGGTATTTCTGTAATTTTGTAAAT
** * ***
72380602 CAAGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTAAAAATCAAGGGTATTTCTGTAATTTTGTAAAT
* *
72380655 CCAGTGGTATTTTGGTAATTTTACAAACTAACTTAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAG-GGTATTTTGGTAATTTT--AAA--AA-TCAAGGGTATTTCTGTAATTTTGTAAAT
* *** * * *
72380715 CGAGGGTAAAATAGTAATTCTATAAATCAAGGGTA
1 CAAGGGTATTTTGGTAATTTTAAAAATCAAGGGTA
72380750 AAATAGTAAT
Statistics
Matches: 157, Mismatches: 36, Indels: 20
0.74 0.17 0.09
Matches are distributed among these distances:
53 3 0.02
54 65 0.41
55 45 0.29
56 3 0.02
57 2 0.01
58 2 0.01
59 34 0.22
60 3 0.02
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTAAAAATCAAGGGTATTTCTGTAATTTTGTAAAT
Found at i:72380628 original size:27 final size:27
Alignment explanation
Indices: 72380493--72380681 Score: 123
Period size: 27 Copynumber: 7.0 Consensus size: 27
72380483 TTTCATCCTA
* * * *
72380493 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
** ** *
72380520 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
72380547 CAATGGTATTTCT-ATAATTTTTAGAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAAT
* **
72380575 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
*
72380602 CAAGGGTATTTTGGTAATTTTAAAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * *
72380629 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
72380655 CCAGTGGTATTTTGGTAATTTTACAAA
1 CAAG-GGTATTTTGGTAATTTTACAAA
72380682 CTAACTTAAG
Statistics
Matches: 126, Mismatches: 32, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
26 3 0.02
27 102 0.81
28 21 0.17
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:72380731 original size:27 final size:27
Alignment explanation
Indices: 72380701--72380976 Score: 246
Period size: 27 Copynumber: 9.8 Consensus size: 27
72380691 GGGTATTTCT
* *
72380701 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * *
72380728 GTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
72380755 GTAATTCTATAAATCGACGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
72380782 ATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
72380809 GTAATTCTGTAAGTCGAGGGTAAAACGGGGGTAAAA
1 GTAATTCTGTAAATCGAGGGTAAAAC---------A
* * **
72380845 TGGTAATTATGTAAATCGGGGGTAAAATG
1 --GTAATTCTGTAAATCGAGGGTAAAACA
*
72380874 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * *
72380901 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * *
72380928 GTACTTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
72380955 GTAATTATGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
72380977 CTTTGGTAAT
Statistics
Matches: 207, Mismatches: 31, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
27 184 0.89
36 1 0.00
38 22 0.11
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:72380841 original size:38 final size:38
Alignment explanation
Indices: 72380790--72380871 Score: 101
Period size: 38 Copynumber: 2.2 Consensus size: 38
72380780 CAATAATTTT
* * *
72380790 GTAAATCGAGGGTAAAACAGTAATTCTGTAAGTCGAGG
1 GTAAAACGAGGGTAAAACAGTAATTATGTAAATCGAGG
* ** *
72380828 GTAAAACGGGGGTAAAATGGTAATTATGTAAATCGGGG
1 GTAAAACGAGGGTAAAACAGTAATTATGTAAATCGAGG
72380866 GTAAAA
1 GTAAAA
72380872 TGGTAATTCT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.39, C:0.07, G:0.30, T:0.23
Consensus pattern (38 bp):
GTAAAACGAGGGTAAAACAGTAATTATGTAAATCGAGG
Found at i:72380860 original size:119 final size:119
Alignment explanation
Indices: 72380709--72380955 Score: 323
Period size: 119 Copynumber: 2.1 Consensus size: 119
72380699 CTGTAATTTT
* * * *
72380709 GTAAATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTATAAATCGACG
1 GTAAAACGGGGGTAAAATAGTAATTATATAAATCAAGGGTAAAATAGTAATTCTATAAATCAACG
* * * * *
72380774 GTAAAACAATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAGTCGAGG
66 GTAAAACAATAATTCTATAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGG
* * ** * * *
72380828 GTAAAACGGGGGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTGTAAATCAAGG
1 GTAAAACGGGGGTAAAATAGTAATTATATAAATCAAGGGTAAAATAGTAATTCTATAAATCAACG
* * *
72380893 GTAAAACAGTAATTCTATAAATCAAGGGTAAAACGGTACTTCTATAAATCGAGG
66 GTAAAACAATAATTCTATAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGG
72380947 GTAAAACGG
1 GTAAAACGG
72380956 TAATTATGTA
Statistics
Matches: 109, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
119 109 1.00
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.26
Consensus pattern (119 bp):
GTAAAACGGGGGTAAAATAGTAATTATATAAATCAAGGGTAAAATAGTAATTCTATAAATCAACG
GTAAAACAATAATTCTATAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGG
Found at i:72380869 original size:92 final size:92
Alignment explanation
Indices: 72380745--72380928 Score: 251
Period size: 92 Copynumber: 2.0 Consensus size: 92
72380735 TATAAATCAA
* * *
72380745 GGGTAAAATAGTAATTCTATAAATCGACGGTAAAACAATAATTTTGTAAATCGAGGGTAAAACAG
1 GGGTAAAATAGTAATTATATAAATCGACGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACAG
* * *
72380810 TAATTCTGTAAGTCGAGGGTAAAACGG
66 TAATTCTATAAATCAAGGGTAAAACGG
* * ** ***
72380837 GGGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACAG
1 GGGTAAAATAGTAATTATATAAATCGACGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACAG
72380902 TAATTCTATAAATCAAGGGTAAAACGG
66 TAATTCTATAAATCAAGGGTAAAACGG
72380929 TACTTCTATA
Statistics
Matches: 79, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
92 79 1.00
ACGTcount: A:0.41, C:0.09, G:0.24, T:0.26
Consensus pattern (92 bp):
GGGTAAAATAGTAATTATATAAATCGACGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACAG
TAATTCTATAAATCAAGGGTAAAACGG
Found at i:72380878 original size:146 final size:146
Alignment explanation
Indices: 72380701--72380976 Score: 408
Period size: 146 Copynumber: 1.9 Consensus size: 146
72380691 GGGTATTTCT
* *
72380701 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTATA
1 GTAATTATGTAAATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATA
* * * * *
72380766 AATCGACGGTAAAACAATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAGTCGAGGGTA
66 AATCAACGGTAAAACAATAATTCTATAAATCGAGGGTAAAACAGTAATTATGTAAATCGAGGGTA
72380831 AAACGGGGGTAAAATG
131 AAACGGGGGTAAAATG
* * *
72380847 GTAATTATGTAAATCGGGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTATGTAAATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATA
* ** * * *
72380912 AATCAAGGGTAAAACGGTACTTCTATAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTA
66 AATCAACGGTAAAACAATAATTCTATAAATCGAGGGTAAAACAGTAATTATGTAAATCGAGGGTA
72380977 CTTTGGTAAT
Statistics
Matches: 114, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
146 114 1.00
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.28
Consensus pattern (146 bp):
GTAATTATGTAAATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATA
AATCAACGGTAAAACAATAATTCTATAAATCGAGGGTAAAACAGTAATTATGTAAATCGAGGGTA
AAACGGGGGTAAAATG
Found at i:72380999 original size:54 final size:52
Alignment explanation
Indices: 72380837--72381003 Score: 172
Period size: 54 Copynumber: 3.1 Consensus size: 52
72380827 GGTAAAACGG
* *
72380837 GGGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTGTAAATCAA
1 GGGTAAAACGGTAATTATGTAAATCGGGGGTAAAATGGTAATT-T-TAAATCGA
* * * ** * *
72380891 GGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACGGTACTTCTATAAATCGA
1 GGGTAAAACGGTAATTATGTAAATCGGGGGTAAAATGGTAATT-T-TAAATCGA
***
72380945 GGGTAAAACGGTAATTATGTAAATCGGGGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTAAAACGGTAATTATGTAAATCGGGGGTAAAATGGTAATTTTA-AA-TCGA
72380999 GGGTA
1 GGGTA
72381004 TTTCAATAAT
Statistics
Matches: 91, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
52 2 0.02
53 3 0.03
54 86 0.95
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (52 bp):
GGGTAAAACGGTAATTATGTAAATCGGGGGTAAAATGGTAATTTTAAATCGA
Found at i:72382758 original size:27 final size:26
Alignment explanation
Indices: 72382710--72382769 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
72382700 AGCGAGCTGC
*
72382710 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
72382737 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
72382763 CAAATAT
1 CAGATAT
72382770 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:72399852 original size:28 final size:29
Alignment explanation
Indices: 72399820--72399918 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
72399810 ATAATAAGCC
*
72399820 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
72399848 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
72399876 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
72399905 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72399919 CAATTCATGA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:72410082 original size:24 final size:24
Alignment explanation
Indices: 72410055--72410169 Score: 203
Period size: 24 Copynumber: 4.8 Consensus size: 24
72410045 CTTATTATGT
72410055 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
72410079 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
**
72410103 TCGCACACATAGTGCCATAGTGGA
1 TCGCACACATAGTGCCATAGTAAA
72410127 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
72410151 TCGTACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
72410170 TATTTCCAGC
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 86 1.00
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:72425821 original size:40 final size:40
Alignment explanation
Indices: 72425777--72426002 Score: 241
Period size: 40 Copynumber: 5.7 Consensus size: 40
72425767 GCTACTCGTT
* * *
72425777 CAAATACCTTCGGGACATAGCTCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCTCGGATT-TAGTAACTCGCA
* *
72425817 CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCTCGGATTTAGTAACTCGCA
*
72425857 CAAATGCCTTC-GGATCTTAGTTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCTCGGATTTAGTAACTCGCA
*
72425897 CAAATGCCTTC-GGATCTTAG-TCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCT-CGGATTTAGTAACTCGCA
* * *
72425937 CAATTGCCTTC-GAATCTTAG-TCCGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCT-CGGATTTAGTAAC-TCGCA
*
72425978 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCTCGGA
72426003 CATCATTCGA
Statistics
Matches: 164, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
39 4 0.02
40 150 0.91
41 10 0.06
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.29
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCTCGGATTTAGTAACTCGCA
Found at i:72425895 original size:80 final size:80
Alignment explanation
Indices: 72425805--72426002 Score: 285
Period size: 80 Copynumber: 2.5 Consensus size: 80
72425795 AGCTCGGTTA
* *
72425805 TAGTAGCTCGCACAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCGA
*
72425870 ATCTTAGTTCGGATT
66 ATCTTAGTCCGGATT
* *
72425885 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-CCGGATTTAGTAACTCGTACAATTGCCTTC
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTA-TCCCGGATTTAGTAACTCGCACAAATGCCTTC
72425948 GAATCTTAGTCCGGATT
64 GAATCTTAGTCCGGATT
* *
72425965 TAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTCGGGACTTATCCCGGA
72426003 CATCATTCGA
Statistics
Matches: 106, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
79 3 0.03
80 91 0.86
81 12 0.11
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCGA
ATCTTAGTCCGGATT
Found at i:72435561 original size:7 final size:7
Alignment explanation
Indices: 72435549--72435573 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
72435539 GTTGTCTTCT
72435549 TGTTTGA
1 TGTTTGA
72435556 TGTTTGA
1 TGTTTGA
72435563 TGTTTGA
1 TGTTTGA
72435570 TGTT
1 TGTT
72435574 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:72436501 original size:27 final size:28
Alignment explanation
Indices: 72436445--72436514 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
72436435 AAATTTGTAC
72436445 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
72436473 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
72436500 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72436515 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:72439777 original size:27 final size:28
Alignment explanation
Indices: 72439721--72439789 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
72439711 AAATTTGTAC
72439721 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
72439749 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
72439776 AGCACT-AGTGTGCG
1 AGCACTAAGTGTGCG
72439790 GACTCACTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 8 0.20
27 15 0.38
28 17 0.43
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:72439800 original size:26 final size:27
Alignment explanation
Indices: 72439721--72439801 Score: 69
Period size: 28 Copynumber: 3.0 Consensus size: 27
72439711 AAATTTGTAC
* *
72439721 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
72439749 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
72439776 AGCACT-AGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
72439802 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
25 1 0.02
26 15 0.31
27 14 0.29
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:72446577 original size:39 final size:39
Alignment explanation
Indices: 72446523--72446666 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
72446513 GAATGTTCGA
72446523 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
72446562 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* **
72446601 ATGATATCCGGGCTAAGCCCGAAGGCAATTACGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
72446640 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
72446667 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:72446615 original size:78 final size:79
Alignment explanation
Indices: 72446524--72446704 Score: 258
Period size: 78 Copynumber: 2.3 Consensus size: 79
72446514 AATGTTCGAG
**
72446524 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTACGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
72446588 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
72446602 TGATATCCGGGCTAAGCCCGAAGGCAATTACGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTACGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
72446667 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
72446681 CCATAACCGGGCT-ATCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGC
72446705 GTTTGAACGA
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
78 62 0.67
79 30 0.33
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTACGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:72450916 original size:27 final size:28
Alignment explanation
Indices: 72450860--72450929 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
72450850 AAATTTGTAC
72450860 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
72450888 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
72450915 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72450930 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:72450940 original size:27 final size:27
Alignment explanation
Indices: 72450860--72450941 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
72450850 AAATTTGTAC
* *
72450860 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
72450888 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
72450915 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
72450942 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:72457433 original size:21 final size:21
Alignment explanation
Indices: 72457409--72457454 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
72457399 TAGAAAGAAT
72457409 AAAATAATGA-AAAAAAAAAGG
1 AAAAT-ATGATAAAAAAAAAGG
* *
72457430 AAAATATGATGAAAACAAAGG
1 AAAATATGATAAAAAAAAAGG
72457451 AAAA
1 AAAA
72457455 AAAAGTGTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.72, C:0.02, G:0.15, T:0.11
Consensus pattern (21 bp):
AAAATATGATAAAAAAAAAGG
Found at i:72457693 original size:7 final size:7
Alignment explanation
Indices: 72457681--72457705 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
72457671 GTTGTCTTCT
72457681 TGTTTGA
1 TGTTTGA
72457688 TGTTTGA
1 TGTTTGA
72457695 TGTTTGA
1 TGTTTGA
72457702 TGTT
1 TGTT
72457706 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:72458633 original size:27 final size:28
Alignment explanation
Indices: 72458577--72458646 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
72458567 AAATTTGTAC
72458577 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
72458605 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
72458632 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72458647 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:72463204 original size:15 final size:15
Alignment explanation
Indices: 72463148--72463212 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
72463138 TAAAGATAAC
*
72463148 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
72463162 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* * *
72463177 GACAAACCCAGAATA
1 AAGAAATCCAGAATA
72463192 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
72463207 AAGAAA
1 AAGAAA
72463213 CCCAAGATAT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
14 9 0.22
15 31 0.76
16 1 0.02
ACGTcount: A:0.62, C:0.15, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:72463214 original size:30 final size:30
Alignment explanation
Indices: 72463148--72463216 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
72463138 TAAAGATAAC
*
72463148 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
* *
72463177 GACAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATA
72463207 AAGAAACCCA
1 AAGAAACCCA
72463217 AGATATGATA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
29 8 0.24
30 25 0.76
ACGTcount: A:0.59, C:0.19, G:0.13, T:0.09
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:72466279 original size:49 final size:49
Alignment explanation
Indices: 72466212--72466398 Score: 209
Period size: 49 Copynumber: 3.8 Consensus size: 49
72466202 GTAGACAAGG
* * * *
72466212 TTATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAA
* * *
72466261 TTATCCGGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGACCTAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AA
** * *
72466311 CCATCTGATACAC---GTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA
* *
72466358 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 -TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
72466399 TATGACCTCA
Statistics
Matches: 114, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
47 30 0.26
48 9 0.08
49 40 0.35
50 11 0.10
51 24 0.21
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAA
Found at i:72466339 original size:47 final size:47
Alignment explanation
Indices: 72466227--72466398 Score: 148
Period size: 47 Copynumber: 3.5 Consensus size: 47
72466217 TGGTACGCAT
* * * ** *
72466227 AGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACAC
1 AGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACAC
* *
72466274 GTAGTAGCCTGCATTTAGTACTACACACGTGACCTAACCATCTGATACAC
1 --AGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACAC
* ** * * *
72466324 -GTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCAT
1 AGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-CCATCCGATA--CAC
72466374 AGTAGCCTGCACTTAGTACTACACA
1 AGTAGCCTGCACTTAGTACTACACA
72466399 TATGACCTCA
Statistics
Matches: 102, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
47 30 0.29
48 7 0.07
49 28 0.27
50 13 0.13
51 24 0.24
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (47 bp):
AGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACAC
Found at i:72466405 original size:98 final size:96
Alignment explanation
Indices: 72466228--72466406 Score: 250
Period size: 98 Copynumber: 1.8 Consensus size: 96
72466218 GGTACGCATA
* * * *
72466228 GTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCATTTAGT
1 GTAGCCTGCACATAGTACTACACACGCGACCAATTATCAGGTACACATAGTAGCCTGCACTTAGT
*
72466293 ACTACACACGTGACCTAACCATCTGATACAC
66 ACTACACACATGACCTAACCATCTGATACAC
* * * *
72466324 GTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACTTA
1 GTAGCCTGCACATAGTACTACACACGCGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACTTA
*
72466389 GTACTACACATATGACCT
64 GTACTACACACATGACCT
72466407 CACAATAAAT
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
96 26 0.37
97 3 0.04
98 42 0.59
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (96 bp):
GTAGCCTGCACATAGTACTACACACGCGACCAATTATCAGGTACACATAGTAGCCTGCACTTAGT
ACTACACACATGACCTAACCATCTGATACAC
Found at i:72469968 original size:28 final size:29
Alignment explanation
Indices: 72469937--72469992 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
72469927 AAGTGATTTT
*
72469937 TGAGAAAAATGTCAATT-AGGGATTAAAA
1 TGAGAAAAATGTAAATTGAGGGATTAAAA
* *
72469965 TGAGAAAAGTGTAAATTGAGGGGTTAAA
1 TGAGAAAAATGTAAATTGAGGGATTAAA
72469993 TTGTGAAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.46, C:0.02, G:0.27, T:0.25
Consensus pattern (29 bp):
TGAGAAAAATGTAAATTGAGGGATTAAAA
Found at i:72473542 original size:40 final size:39
Alignment explanation
Indices: 72473415--72473544 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
72473405 ATGCTGGAAA
* *
72473415 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * * *
72473455 CTACATCCGGGCAAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
72473495 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
72473535 TTATATCCGG
1 TTATATCCGG
72473545 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.05
40 71 0.95
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.22
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:72485329 original size:93 final size:93
Alignment explanation
Indices: 72485217--72485388 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72485207 GCCCATAAGT
* *
72485217 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72485282 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
72485310 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72485375 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
72485389 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72485384 original size:46 final size:46
Alignment explanation
Indices: 72485209--72485384 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
72485199 TGTAACCCGC
* * *
72485209 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
72485255 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
72485305 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
72485348 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72485385 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:72487810 original size:30 final size:30
Alignment explanation
Indices: 72487766--72487854 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
72487756 CAAAGATAAC
72487766 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
72487795 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
72487825 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
72487855 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:72487814 original size:15 final size:15
Alignment explanation
Indices: 72487766--72487845 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
72487756 CAAAGATAAC
*
72487766 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
72487780 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
72487795 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
72487810 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
72487825 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
72487840 AAGAAA
1 AAGAAA
72487846 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:72487854 original size:15 final size:15
Alignment explanation
Indices: 72487777--72487854 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
72487767 AGAAAACCGA
72487777 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
72487792 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
72487806 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
72487821 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
72487837 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
72487852 ATA
1 ATA
72487855 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:72490916 original size:93 final size:93
Alignment explanation
Indices: 72490804--72490975 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72490794 GCCCATAAGT
* *
72490804 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72490869 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
72490897 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72490962 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
72490976 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72490971 original size:46 final size:46
Alignment explanation
Indices: 72490796--72490971 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
72490786 TGTAACCCGC
* * *
72490796 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
72490842 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
72490892 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
72490935 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72490972 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:72497799 original size:40 final size:40
Alignment explanation
Indices: 72497744--72497951 Score: 287
Period size: 40 Copynumber: 5.2 Consensus size: 40
72497734 TGAATGATAC
* *
72497744 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATAT
72497784 CCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCT-AGTTGTTATAT
*
72497824 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * *
72497864 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * * *
72497904 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
72497944 CC-GGCTAA
1 CCGGGCTAA
72497952 ATTTTGAAGA
Statistics
Matches: 152, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 6 0.04
40 144 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
Found at i:72514951 original size:13 final size:13
Alignment explanation
Indices: 72514933--72514968 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
72514923 TAAGTTCGAC
72514933 CACGGCCATGTCG
1 CACGGCCATGTCG
72514946 CACGGCCATGTCG
1 CACGGCCATGTCG
72514959 CACGGCCATG
1 CACGGCCATG
72514969 GCGTTTTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.17, C:0.39, G:0.31, T:0.14
Consensus pattern (13 bp):
CACGGCCATGTCG
Found at i:72526297 original size:43 final size:42
Alignment explanation
Indices: 72526209--72526297 Score: 108
Period size: 43 Copynumber: 2.1 Consensus size: 42
72526199 ATTGAGATGA
* * * *
72526209 GATTACATGTAAGACCATTCTGGGACATTGGCATTGTATTGT
1 GATTACATGTAAAACCATTCTGGGACATTGACATCGTATTAT
*
72526251 GATTACATGTAAAACCATGTTTGGGACATTGACATCGT-TATAT
1 GATTACATGTAAAACCAT-TCTGGGACATTGACATCGTAT-TAT
72526294 GATT
1 GATT
72526298 TCGTGTAAGA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
42 18 0.45
43 22 0.55
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.36
Consensus pattern (42 bp):
GATTACATGTAAAACCATTCTGGGACATTGACATCGTATTAT
Found at i:72531150 original size:40 final size:39
Alignment explanation
Indices: 72531105--72531234 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
72531095 CGGAATATAA
72531105 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
72531145 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
72531185 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
72531225 CCGGATATAA
1 CCGGATATAA
72531235 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72531249 original size:40 final size:40
Alignment explanation
Indices: 72531121--72531272 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
72531111 ATAACCATGT
* * *
72531121 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
72531161 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
72531201 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
72531241 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
72531273 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:72531255 original size:80 final size:80
Alignment explanation
Indices: 72531121--72531270 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
72531111 ATAACCATGT
*
72531121 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
72531185 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
72531201 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
72531264 CCCGGAT
64 CCCGGAT
72531271 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:72535058 original size:80 final size:80
Alignment explanation
Indices: 72534942--72535209 Score: 351
Period size: 80 Copynumber: 3.4 Consensus size: 80
72534932 ACCACATGCT
* *
72534942 CGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTTGCGCAAATGCCTTCGGGTATTAGCCCGG
1 CGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGCCCGG
72535007 ATTTAACAACTTGCA
66 ATTTAACAACTTGCA
72535022 CGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGCCCGG
1 CGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGCCCGG
72535087 ATTTAACAACTTGCA
66 ATTTAACAACTTGCA
* * * * * *
72535102 TGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GTCACTAGCACAATTGCCTTCGGGTCTTAACCC
1 CGAATGCCTTCGGGTCTTAGCCCGGATAGAACG--ACTTGCACAAATGCCTTCGGGTATTAGCCC
* ** *
72535165 GGATATAATTACTAGCA
64 GGATTTAACAACTTGCA
** * * *
72535182 TAAATGTCTTCAGGACTTAGCCCGGATA
1 CGAATGCCTTCGGGTCTTAGCCCGGATA
72535210 TCATTCAATT
Statistics
Matches: 169, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
78 1 0.01
79 2 0.01
80 166 0.98
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (80 bp):
CGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGCCCGG
ATTTAACAACTTGCA
Found at i:72535179 original size:40 final size:40
Alignment explanation
Indices: 72534944--72535210 Score: 293
Period size: 40 Copynumber: 6.7 Consensus size: 40
72534934 CACATGCTCG
* ** *
72534944 AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTTGCGCA
1 AATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACA
* * *
72534984 AATGCCTTCGGGTATTAGCCCGGATTTAACAACTTGCACG
1 AATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACA
* *
72535024 AATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACA
1 AATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACA
* * **
72535064 AATGCCTTCGGGTATTAGCCCGGATTTAACAACTTGCATG
1 AATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACA
* * *
72535104 AATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACA
1 AATGCCTTCGGGTCTTAGCCCGGATATA-ACAACTTGCACA
* * ** * *
72535144 ATTGCCTTCGGGTCTTAACCCGGATATAATTACTAGCATA
1 AATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACA
* * *
72535184 AATGTCTTCAGGACTTAGCCCGGATAT
1 AATGCCTTCGGGTCTTAGCCCGGATAT
72535211 CATTCAATTG
Statistics
Matches: 190, Mismatches: 35, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
40 189 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
AATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACA
Found at i:72536301 original size:63 final size:63
Alignment explanation
Indices: 72536121--72536303 Score: 201
Period size: 63 Copynumber: 2.8 Consensus size: 63
72536111 ATAGAGTTCG
* * * * *
72536121 GCTCTCTTGTAC-ACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCA-ATTTATCTCGTA
1 GCTCTCTTGT-CTACATGGTGTACACT-AGTACCACCCATGCGACCTAGCTACATATATCCCGTA
* * *
72536184 GCTCTCTTGTCTACATGGTGTACTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTGTA---CA-CTAGTACCACCCATGCGACCTAGCTACATATATCCCG
72536249 TA
62 TA
*
72536251 GCTCTCTT-TCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACAC-TAGTACCACCCATGCGACCTAGCTACAT
72536304 CATAATGTCT
Statistics
Matches: 101, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
62 2 0.02
63 45 0.45
66 34 0.34
67 20 0.20
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (63 bp):
GCTCTCTTGTCTACATGGTGTACACTAGTACCACCCATGCGACCTAGCTACATATATCCCGTA
Found at i:72537068 original size:30 final size:30
Alignment explanation
Indices: 72537034--72537094 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72537024 TCCTTAACTC
72537034 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
72537064 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
72537094 A
1 A
72537095 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:72544967 original size:29 final size:29
Alignment explanation
Indices: 72544908--72544995 Score: 142
Period size: 29 Copynumber: 3.1 Consensus size: 29
72544898 CATACCTGTC
*
72544908 TATGGCCCACTAGGCCC-AATCACATTTA
1 TATGGCCCATTAGGCCCAAATCACATTTA
72544936 TATGGCCCATTAGGCCCAAATCACATTTA
1 TATGGCCCATTAGGCCCAAATCACATTTA
* *
72544965 TATGGCCCATCAGGCCCAATTCACATTTA
1 TATGGCCCATTAGGCCCAAATCACATTTA
72544994 TA
1 TA
72544996 GTCATGCTCA
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 16 0.29
29 40 0.71
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.27
Consensus pattern (29 bp):
TATGGCCCATTAGGCCCAAATCACATTTA
Found at i:72545986 original size:4 final size:4
Alignment explanation
Indices: 72545977--72546002 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
72545967 TTTATACTAA
72545977 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
72546003 TACATCTACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:72563489 original size:46 final size:45
Alignment explanation
Indices: 72563439--72563611 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 45
72563429 TGGTTGAGCA
72563439 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
72563485 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* *
72563530 CATCTGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGTGAAT-
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
*
72563577 TCCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
72563612 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 59 0.56
47 28 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:72563595 original size:93 final size:93
Alignment explanation
Indices: 72563436--72563607 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
72563426 GGATGGTTGA
72563436 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
72563501 TGAGTCCGAGTTCATGAAATGTAACTAG
66 TGAGTCCGAGTTCATGAAATGTAACTAG
* * * *
72563529 GCATCTGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGTGAAT-TCCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-GAACTCGTTGAG
72563593 TTGAGTCCGAGTTCA
65 TTGAGTCCGAGTTCA
72563608 CTTAGGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 3 0.04
93 71 0.96
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCATGAAATGTAACTAG
Found at i:72567181 original size:40 final size:40
Alignment explanation
Indices: 72567054--72567183 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
72567044 ATGCTGGAAA
* *
72567054 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
72567094 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
72567134 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
72567174 TTATATCCGG
1 TTATATCCGG
72567184 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:72571634 original size:50 final size:49
Alignment explanation
Indices: 72571530--72571712 Score: 179
Period size: 50 Copynumber: 3.7 Consensus size: 49
72571520 CTGGTACGCA
* * * ** *
72571530 TAGTAGCTTGCACATAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACCATCTGATACACG
*
72571579 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AACCATCTGATACACG
* * ** * * * *
72571629 TAGTAGCCTACACTTAGTACTACACATGTGATCGAAGTTAT-TGGGTGCGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-CCATCT-GATACACG
*
72571680 TAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
72571713 TCACAATAGA
Statistics
Matches: 111, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
49 29 0.26
50 46 0.41
51 36 0.32
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAACCATCTGATACACG
Found at i:72574378 original size:15 final size:15
Alignment explanation
Indices: 72574331--72574386 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
72574321 CCAGAAAACC
72574331 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
* * *
72574346 -AGATAGACAAACCCA
1 GA-ATAAAGAAATCCA
72574361 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
72574376 GAATAAAGAAA
1 GAATAAAGAAA
72574387 CCCAAGATAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
14 1 0.03
15 31 0.94
16 1 0.03
ACGTcount: A:0.61, C:0.14, G:0.14, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:72574388 original size:30 final size:30
Alignment explanation
Indices: 72574314--72574390 Score: 86
Period size: 30 Copynumber: 2.5 Consensus size: 30
72574304 TTATGGAATA
*
72574314 AAGATAACCAGAAAACC-GAATAAAGAAATCC
1 AAGATAA--AGAAACCCAGAATAAAGAAATCC
* *
72574345 AAGATAGACAAACCCAGAATAAAGAAATCC
1 AAGATAAAGAAACCCAGAATAAAGAAATCC
72574375 -AGAATAAAGAAACCCA
1 AAG-ATAAAGAAACCCA
72574391 AGATATGATA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
29 8 0.21
30 25 0.64
31 6 0.15
ACGTcount: A:0.58, C:0.19, G:0.13, T:0.09
Consensus pattern (30 bp):
AAGATAAAGAAACCCAGAATAAAGAAATCC
Found at i:72577453 original size:49 final size:48
Alignment explanation
Indices: 72577386--72577577 Score: 188
Period size: 49 Copynumber: 3.9 Consensus size: 48
72577376 GTAGACAAGG
* *
72577386 TTATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCAACCAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATG-AACCAA
* * *
72577435 TTATCCGGTACACGTAGTAGCCTGCATTTAGTACTACACACGTG-ACCTAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA--TGAACC-AA
** * * * * *
72577485 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACGCACGTGATCGAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTA--CACATGAACCAA
* *
72577535 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATG
1 -TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATG
72577578 TGACCTCACA
Statistics
Matches: 116, Mismatches: 20, Indels: 14
0.77 0.13 0.09
Matches are distributed among these distances:
49 43 0.37
50 37 0.32
51 33 0.28
52 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (48 bp):
TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGAACCAA
Found at i:72577509 original size:50 final size:51
Alignment explanation
Indices: 72577400--72577583 Score: 176
Period size: 50 Copynumber: 3.7 Consensus size: 51
72577390 CTGGTACGCA
* * ** ** * *
72577400 TAGTAGCCTGCACATAGTACTACACATGCAACC-AA-TTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCAGATACACG
* *
72577449 TAGTAGCCTGCATTTAGTACTACACACGTGACCTAA-CCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCAGATACACG
* * * ** * * *
72577499 TAGTAGCCTGCACTTAGTACTACGCACGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCAGATACACG
*
72577550 TAGTAGCCTGCACTTAGTACTACACATGTGACCT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
72577584 CACAATAGAT
Statistics
Matches: 110, Mismatches: 23, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
49 28 0.25
50 44 0.40
51 38 0.35
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (51 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCAGATACACG
Found at i:72577567 original size:101 final size:99
Alignment explanation
Indices: 72577400--72577583 Score: 253
Period size: 101 Copynumber: 1.8 Consensus size: 99
72577390 CTGGTACGCA
* * *
72577400 TAGTAGCCTGCACATAGTACTACACATGCAACCAATTATCCGGTACACGTAGTAGCCTGCATTTA
1 TAGTAGCCTGCACATAGTACTACACATGCAACCAATTATCAGGTACACATAGTAGCCTGCACTTA
72577465 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGTGACCTAACCATCTGATACACG
* * * * *
72577499 TAGTAGCCTGCACTTAGTACTACGCACGTG-ATCGAAGTTATCAGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACATAGTACTA--CACATGCAACCAA-TTATCAGGTACACATAGTAGCCTGCAC
*
72577563 TTAGTACTACACATGTGACCT
63 TTAGTACTACACACGTGACCT
72577584 CACAATAGAT
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
99 21 0.29
100 4 0.05
101 48 0.66
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACATAGTACTACACATGCAACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCTAACCATCTGATACACG
Found at i:72583146 original size:22 final size:22
Alignment explanation
Indices: 72583121--72583196 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
72583111 AAGTGTATAT
72583121 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * **
72583143 ATGTGATGAATG-TGAATGTGTATA
1 ATGTGAT-AAGGCCGAATG-G-CCA
*
72583167 TATGTGATAAGGCCGAATGGCCG
1 -ATGTGATAAGGCCGAATGGCCA
72583190 ATGTGAT
1 ATGTGAT
72583197 GGATGTGAAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 19 0.47
23 4 0.10
24 5 0.12
25 12 0.30
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:72583153 original size:47 final size:47
Alignment explanation
Indices: 72583099--72583271 Score: 283
Period size: 47 Copynumber: 3.7 Consensus size: 47
72583089 ATGATGAAAT
72583099 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
72583146 TGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* * *
72583193 TGATGGATGTGAAGGTGTATATATGTGATAAGGCCAAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
72583240 TGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGATGAATGTGAAAGTGTATATATGTGATAAG
72583272 TCCCGAAGGG
Statistics
Matches: 118, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 118 1.00
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.29
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
Found at i:72583184 original size:25 final size:25
Alignment explanation
Indices: 72583113--72583185 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 25
72583103 GAATGTGAAA
72583113 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
** * *
72583138 G-G-CCA-ATGTGATGAATG-TGAAT
1 GTGTATATATGTGAT-AAGGCCGAAT
72583160 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
72583185 G
1 G
72583186 GCCGATGTGA
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
22 12 0.34
23 5 0.14
24 5 0.14
25 13 0.37
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (25 bp):
GTGTATATATGTGATAAGGCCGAAT
Found at i:72586089 original size:43 final size:43
Alignment explanation
Indices: 72585742--72586077 Score: 579
Period size: 43 Copynumber: 7.9 Consensus size: 43
72585732 GCATGAAACT
*
72585742 CGGTGATGTGTATTGGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
72585785 CGGTGATGTGTATT-GGG--TTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
72585825 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
72585868 CGATGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
**
72585911 CAATGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
72585954 CGATGATGTGTATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
72585997 CGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
72586040 CGGTGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTT
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTT
72586078 AATGCTGGTG
Statistics
Matches: 281, Mismatches: 9, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
40 37 0.13
41 3 0.01
42 3 0.01
43 238 0.85
ACGTcount: A:0.11, C:0.24, G:0.34, T:0.31
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:72586346 original size:29 final size:28
Alignment explanation
Indices: 72586246--72586403 Score: 115
Period size: 29 Copynumber: 5.5 Consensus size: 28
72586236 ATGATTAGAG
* *
72586246 GCACTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGTGCGAATT-CTTTAACCGA
** **
72586275 GCACTATGTGTGCGAGA-TCAGTAATTGA
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
*
72586303 GGCACTGTGTGTGCGAATTCCTTTAACCGA
1 -GCACTATGTGTGCGAATT-CTTTAACCGA
** **
72586333 GCACTATGTGTGCGAGA-TCGGTAATTGA
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
* * *
72586361 GGCACTGTGTGTGC-AGTTCTTCAACCGA
1 -GCACTATGTGTGCGAATTCTTTAACCGA
72586389 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
72586404 GATCGGTCAG
Statistics
Matches: 97, Mismatches: 24, Indels: 17
0.70 0.17 0.12
Matches are distributed among these distances:
27 12 0.12
28 21 0.22
29 56 0.58
30 8 0.08
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACCGA
Found at i:72586396 original size:56 final size:58
Alignment explanation
Indices: 72586243--72586410 Score: 286
Period size: 58 Copynumber: 2.9 Consensus size: 58
72586233 CGAATGATTA
*
72586243 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
*
72586301 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
* *
72586359 GAGGCACTGTGTGTGC-AGTT-CTTCAACCGAGCACTATGTGTGCGAGATCGGT
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGT
72586411 CAGTGGGCAC
Statistics
Matches: 106, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
56 31 0.29
57 3 0.03
58 72 0.68
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
Found at i:72590386 original size:35 final size:35
Alignment explanation
Indices: 72590347--72590419 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
72590337 GGTATGTGAT
72590347 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
72590382 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
72590417 ATA
1 ATA
72590420 AAGAATGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTGATCTGACGAGA
Found at i:72598152 original size:68 final size:70
Alignment explanation
Indices: 72598080--72598277 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
72598070 ACACCCTGTA
* * * *
72598080 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
72598142 ATAAAT
65 ATAAAT
*
72598148 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
72598213 ATAAAT
65 ATAAAT
*
72598219 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
72598278 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:72598191 original size:41 final size:41
Alignment explanation
Indices: 72598146--72598263 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
72598136 TGAAAGATAA
72598146 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
72598187 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72598217 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72598258 ATGTAG
1 ATGTAG
72598264 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:72598203 original size:71 final size:71
Alignment explanation
Indices: 72598114--72598277 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72598104 GAGATGTATC
72598114 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72598179 AGGACA
66 AGGACA
72598185 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72598250 AGGACA
66 AGGACA
72598256 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
72598278 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:72600709 original size:79 final size:81
Alignment explanation
Indices: 72600545--72600729 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
72600535 TCGAATGATG
* * *
72600545 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
72600609 CGTGCGAGTTAATAAA
66 CGTGCGAGTCAATAAA
* * **
72600625 TCCGGGCCAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
72600687 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATA-AA
**
72600705 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72600730 AGCGAGTCGT
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.62
80 33 0.37
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATAAA
Found at i:72600737 original size:40 final size:40
Alignment explanation
Indices: 72600546--72600737 Score: 142
Period size: 40 Copynumber: 4.8 Consensus size: 40
72600536 CGAATGATGT
* * * * *
72600546 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
72600586 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
** * *
72600626 CCGGGCCAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
72600665 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
72600705 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
72600738 GTTATATCCG
Statistics
Matches: 124, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
39 32 0.26
40 81 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:72604344 original size:45 final size:45
Alignment explanation
Indices: 72604254--72604426 Score: 192
Period size: 45 Copynumber: 3.9 Consensus size: 45
72604244 TTTTCTCAAG
* * * * *
72604254 TCACCGGCATT-TCGCCTGCTAAGCTC-GAGGCCTGATTA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATT
* *
72604297 TCACCGGCATTATAGCCTGCCAGGCTCGAAA-GCCTGAATAGTATT
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATT
* * * *
72604342 TCACCGGGATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTGTC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
*
72604387 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
72604427 TAATACCAGC
Statistics
Matches: 112, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
43 11 0.10
44 15 0.13
45 84 0.75
46 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
Done.