Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 235 of 410
Found at i:72604474 original size:38 final size:38
Alignment explanation
Indices: 72604419--72604659 Score: 308
Period size: 38 Copynumber: 6.3 Consensus size: 38
72604409 GGCTCAAAGG
* *
72604419 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
72604457 CCCGGATATA-TACCCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTA-CCAGCACGAAGCCTGCGGGATTTAA
*
72604495 CCCGGATGTATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* * * *
72604533 CCCGAATGTATTACCAGCATGAAGCCTACGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* *
72604571 CCCAGATATATTACCAGCACGAAGCCTGCAGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* *
72604609 CCCGGATATAATT-CCAGCA-TATAGCCTGCGGGTCTTTAA
1 CCCGGATAT-ATTACCAGCACGA-AGCCTGCGGG-ATTTAA
*
72604648 GCCAGGATATAT
1 -CCCGGATATAT
72604660 ATCAAATATC
Statistics
Matches: 181, Mismatches: 16, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
37 3 0.02
38 158 0.87
39 12 0.07
40 8 0.04
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (38 bp):
CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
Found at i:72608728 original size:48 final size:48
Alignment explanation
Indices: 72608645--72608757 Score: 131
Period size: 48 Copynumber: 2.3 Consensus size: 48
72608635 GTCCAACTAT
* * *
72608645 GGTCTTATACTAGCTCTGCACTGCCCGTGCTGATGCCTATTCCC-GATA
1 GGTCTTACACTAGCACTGCACTGCCCGTGCCGATGCCTA-TCCCAGATA
* *
72608693 GGTCTTACACTAGCACT-CACTAGGCTGTGCCGATGCCTATCCCAGATA
1 GGTCTTACACTAGCACTGCACT-GCCCGTGCCGATGCCTATCCCAGATA
*
72608741 GGTCTTACGCTTAGCAC
1 GGTCTTACAC-TAGCAC
72608758 AAGTCGAGCC
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
47 8 0.14
48 42 0.75
49 6 0.11
ACGTcount: A:0.19, C:0.31, G:0.21, T:0.28
Consensus pattern (48 bp):
GGTCTTACACTAGCACTGCACTGCCCGTGCCGATGCCTATCCCAGATA
Found at i:72610181 original size:45 final size:45
Alignment explanation
Indices: 72610060--72610186 Score: 175
Period size: 45 Copynumber: 2.8 Consensus size: 45
72610050 GATTATCATT
* * * *
72610060 TCACCGGCATTATAGCCTGCCAGGCTCGAAA-GCCCAAATAGTATT
1 TCACCGGCATAATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
* *
72610105 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTGTC
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
72610150 TCACCGGCAAAATAGCCTGCTAGGCTCAAAGGCCCGA
1 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGA
72610187 GTATAATACT
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
44 3 0.04
45 71 0.96
ACGTcount: A:0.28, C:0.31, G:0.23, T:0.19
Consensus pattern (45 bp):
TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:72610241 original size:38 final size:38
Alignment explanation
Indices: 72610188--72610574 Score: 526
Period size: 38 Copynumber: 10.1 Consensus size: 38
72610178 AAGGCCCGAG
* *
72610188 TATAATACTAGCACGAAGCCTGCGGGATTTAACCCGGA
1 TATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGA
72610226 TATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGA
1 TATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGA
* *
72610264 TGTATTACCAGCACGAAGCCTGCGGGATTTAACCTGGA
1 TATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGA
* * *
72610302 TGTATTACCAGCACGAAGCCTACGGAATTTAACCCGGA
1 TATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGA
* * **
72610340 TGTATTACCAGCACGAAGCTTGCGGGATTTAACCCAAA
1 TATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGA
*
72610378 TGTATTACCAGCACGAAGCCTGCGGGATTTAACCCGGA
1 TATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGA
* *
72610416 TATATTACCAGCACGAAGCCTACGGGATTTAACCCGAA
1 TATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGA
* * * *
72610454 TGTATTACCAGCACGAAGCTTGCAGGATTTAACCTGGA
1 TATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGA
*
72610492 TATATTACCAGCACGAAGCTTGCGGGATTTAACCCGGA
1 TATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGA
* * *
72610530 TATAATT-CCAGCA-TATAGCCTGCGGGTCTTTAAGCCAGGA
1 TAT-ATTACCAGCACGA-AGCCTGCGGG-ATTTAA-CCCGGA
72610570 TATAT
1 TATAT
72610575 ATCAAATATC
Statistics
Matches: 314, Mismatches: 31, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
37 1 0.00
38 295 0.94
39 10 0.03
40 8 0.03
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.24
Consensus pattern (38 bp):
TATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGA
Found at i:72616145 original size:48 final size:48
Alignment explanation
Indices: 72616074--72616497 Score: 422
Period size: 48 Copynumber: 8.8 Consensus size: 48
72616064 CATCGATGTC
* *
72616074 GATGCCATG-TCCTAGACATGGTCTTACACTGGCTCACATAACAATACT
1 GATGCCATGTTCC-AAACATGGTCTTACACTGGCTCACATAACAATGCT
* *
72616122 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAACAATACC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAACAATGCT
** * *** *
72616170 GATGCCATGTTCCAAACATCATCTTACACTGGCTCGCATATTGAGGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAACAATGCT
* * *
72616218 GATGCCATG-TCCTAGACATGGTCTTACACTAGCTCTCATAACAATGCT
1 GATGCCATGTTCC-AAACATGGTCTTACACTGGCTCACATAACAATGCT
*
72616266 GATGTCATGTTCCAAACATGGTCTTACACTGGCTCACATAACAATG-T
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAACAATGCT
* * ** * *** * *
72616313 CGATTCCATGTTCCAAAAATGGTCTTACACTATCTCGCATATTGAGGCC
1 -GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAACAATGCT
* *** * *
72616362 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATTGAGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAACAATGCT
* * * * * * * *
72616410 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAGAATAATACA
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAACAATGCT
* * *
72616458 GATGCCATGTTTCAAACATGATCTTACACTAGCTCACATA
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
72616498 TAACCTTAGT
Statistics
Matches: 316, Mismatches: 55, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
47 4 0.01
48 306 0.97
49 6 0.02
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (48 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAACAATGCT
Found at i:72616339 original size:144 final size:143
Alignment explanation
Indices: 72616073--72616498 Score: 566
Period size: 144 Copynumber: 3.0 Consensus size: 143
72616063 ACATCGATGT
*
72616073 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATAACAATACTGATGCCATGTTCCAAA
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATAACAATGCTGATGCCATGTTCCAAA
* *
72616138 CATGGTCTTACACTGGCTCACATAACAATACCGATGCCATGTTCCAAACATCATCTTACACTGGC
66 CATGGTCTTACACTGGCTCACATAACAATA-CGATGCCATGTTCCAAACATGATCTTACACTAGC
72616203 TCGCATATTGAGGC
130 TCGCATATTGAGGC
* * * *
72616217 TGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAACAATGCTGATGTCATGTTCCAAA
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATAACAATGCTGATGCCATGTTCCAAA
* * * * *
72616282 CATGGTCTTACACTGGCTCACATAACAATGTCGATTCCATGTTCCAAAAATGGTCTTACACTATC
66 CATGGTCTTACACTGGCTCACATAACAAT-ACGATGCCATGTTCCAAACATGATCTTACACTAGC
72616347 TCGCATATTGAGGC
130 TCGCATATTGAGGC
* * *** * * * *
72616361 CGATGCCATGTTCC-AAACATGGTCTTACACTGGCTCGCATATTGAGGCCGATGCCATGTCCCAG
1 CGATGCCATG-TCCTAGACATGGTCTTACACTGGCTCACATAACAATGCTGATGCCATGTTCCAA
* * * * *
72616425 ACATGGTCTTACACTAGCTCTCAGAATAATACAGATGCCATGTTTCAAACATGATCTTACACTAG
65 ACATGGTCTTACACTGGCTCACATAACAATAC-GATGCCATGTTCCAAACATGATCTTACACTAG
*
72616490 CTCACATAT
129 CTCGCATAT
72616499 AACCTTAGTA
Statistics
Matches: 244, Mismatches: 35, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
143 1 0.00
144 240 0.98
145 3 0.01
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (143 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATAACAATGCTGATGCCATGTTCCAAA
CATGGTCTTACACTGGCTCACATAACAATACGATGCCATGTTCCAAACATGATCTTACACTAGCT
CGCATATTGAGGC
Found at i:72616498 original size:96 final size:96
Alignment explanation
Indices: 72616026--72616498 Score: 455
Period size: 96 Copynumber: 4.9 Consensus size: 96
72616016 TAAAATGACA
* * * * * ** *
72616026 ATGCCATGTCCTAGACATGGTCTTACA-TTGTTCTCATACATCGATGTCGATGCCATG-TCCTAG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATA-A-CAATACCGATGCCATGTTCC-AA
* *** ** *
72616089 ACATGGTCTTACACTGGCTCACATAACAATACTG
63 ACATGATCTTACACTGGCTCACATATTGAGGCCG
* * *
72616123 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAACAATACCGATGCCATGTTCCAAACA
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATACCGATGCCATGTTCCAAACA
* * *
72616188 TCATCTTACACTGGCTCGCATATTGAGGCTG
66 TGATCTTACACTGGCTCACATATTGAGGCCG
* * * * *
72616219 ATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAACAATGCTGATGTCATGTTCCAAACA
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATACCGATGCCATGTTCCAAACA
* *** * *
72616284 TGGTCTTACACTGGCTCACATAACAATGTCG
66 TGATCTTACACTGGCTCACATATTGAGGCCG
* * * * * *** **
72616315 ATTCCATGTTCCAAAAATGGTCTTACACTATCTCGCATATTGAGGCCGATGCCATGTTCCAAACA
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATACCGATGCCATGTTCCAAACA
* *
72616380 TGGTCTTACACTGGCTCGCATATTGAGGCCG
66 TGATCTTACACTGGCTCACATATTGAGGCCG
* * * * *
72616411 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAGAATAATACAGATGCCATGTTTCAAACA
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATACCGATGCCATGTTCCAAACA
*
72616476 TGATCTTACACTAGCTCACATAT
66 TGATCTTACACTGGCTCACATAT
72616499 AACCTTAGTA
Statistics
Matches: 304, Mismatches: 70, Indels: 5
0.80 0.18 0.01
Matches are distributed among these distances:
96 268 0.88
97 28 0.09
98 8 0.03
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (96 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATACCGATGCCATGTTCCAAACA
TGATCTTACACTGGCTCACATATTGAGGCCG
Found at i:72618080 original size:40 final size:40
Alignment explanation
Indices: 72618031--72618238 Score: 224
Period size: 40 Copynumber: 5.2 Consensus size: 40
72618021 TCTTCGGAAT
* * *
72618031 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * * *
72618070 TTAACCCGGATTTGGA-AACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT-AACAACTAGCACAAATGCCTTCGGGTC
* * *
72618110 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCAGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *** *
72618150 TTAGCCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
72618190 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
72618230 TTAGCCCGG
1 TTAGCCCGG
72618239 GTATCATTCA
Statistics
Matches: 138, Mismatches: 27, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
39 4 0.03
40 133 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:72618158 original size:80 final size:78
Alignment explanation
Indices: 72618031--72618238 Score: 292
Period size: 80 Copynumber: 2.6 Consensus size: 78
72618021 TCTTCGGAAT
* *
72618031 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGAAACTTGCAC
1 TTAGCCCGGATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATTTGGAAACTTGCAC
72618095 AAATGCCTTCGGGTC
64 AAATGCCTTCGGGTC
* * *
72618110 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCAGGTCTTAGCCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATTTGGAAACTTGCAC
72618175 AAATGCCTTCGGGTC
64 AAATGCCTTCGGGTC
* *
72618190 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGCCCGG
72618239 GTATCATTCA
Statistics
Matches: 115, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
79 5 0.04
80 107 0.93
81 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
TTAGCCCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGATTTGGAAACTTGCACAA
ATGCCTTCGGGTC
Found at i:72623883 original size:25 final size:25
Alignment explanation
Indices: 72623831--72623887 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
72623821 CCGCTTTTTC
72623831 GAGCT-ATGAATAGTAAGCTTATCCT
1 GAGCTGATGAATAGTAAGCTTAT-CT
*
72623856 GAGCTGATGGATAGTAAGCTCTAT-T
1 GAGCTGATGAATAGTAAGCT-TATCT
72623881 GAGCTGA
1 GAGCTGA
72623888 AACGGTAAGC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 13 0.45
26 13 0.45
27 3 0.10
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (25 bp):
GAGCTGATGAATAGTAAGCTTATCT
Found at i:72625504 original size:21 final size:21
Alignment explanation
Indices: 72625480--72625540 Score: 57
Period size: 20 Copynumber: 3.3 Consensus size: 21
72625470 ATATTTTAAT
72625480 ATTTTATAATAAAATTCAAAA
1 ATTTTATAATAAAATTCAAAA
*
72625501 ATTTT-T--T--GA-T-AAAA
1 ATTTTATAATAAAATTCAAAA
72625515 ATTTTATAATAAAATTC-AAA
1 ATTTTATAATAAAATTCAAAA
72625535 ATTTTA
1 ATTTTA
72625541 GTTTATGCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 15
0.65 0.04 0.31
Matches are distributed among these distances:
14 9 0.29
15 2 0.06
16 1 0.03
17 1 0.03
18 1 0.03
19 1 0.03
20 11 0.35
21 5 0.16
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (21 bp):
ATTTTATAATAAAATTCAAAA
Found at i:72633508 original size:49 final size:50
Alignment explanation
Indices: 72633440--72633678 Score: 281
Period size: 49 Copynumber: 4.8 Consensus size: 50
72633430 TAGCCAAAGC
* *
72633440 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACAC-CTGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACTGCGACCAAT
* * *
72633489 TATCCGGTACACGTAGTAGCTTGCACTTAGTACTACACACAT--GACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAC-TGCGACC-AAT
* * * *
72633539 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACAC-GTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACTGCGA-CCAA-T
* **
72633590 TATCGGGTACACACAGTAGCCTGCACTTAGTACTACACA-TGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACTGCGACCAAT
* *
72633639 AATCTGGTACACGTAGTAGCCTGCACTTAGTATTACACAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAC
72633679 GTGACGTCAC
Statistics
Matches: 158, Mismatches: 23, Indels: 17
0.80 0.12 0.09
Matches are distributed among these distances:
49 73 0.46
50 46 0.29
51 39 0.25
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (50 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACTGCGACCAAT
Found at i:72633677 original size:100 final size:99
Alignment explanation
Indices: 72633441--72633683 Score: 310
Period size: 100 Copynumber: 2.4 Consensus size: 99
72633431 AGCCAAAGCT
* * * **
72633441 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACAC-CTGCGACCAATTATCCGGTACACGTAG
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAC-GTGACCAATTATCCGGTACACACAG
* * *
72633505 TAGCTTGCACTTAGTACTACACACATGACCTAACC
65 TAGCCTGCACTTAGTACTACACACACGACCTAACA
* * *
72633540 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACACACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACACA
** *
72633605 GTAGCCTGCACTTAGTACTACACATGCGACC-AATA
64 GTAGCCTGCACTTAGTACTACACACACGACCTAACA
*
72633640 ATCTGGTACACGTAGTAGCCTGCACTTAGTATTACACACGTGAC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC
72633684 GTCACAATAG
Statistics
Matches: 125, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
99 38 0.30
100 47 0.38
101 40 0.32
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (99 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACACAGT
AGCCTGCACTTAGTACTACACACACGACCTAACA
Found at i:72639036 original size:49 final size:49
Alignment explanation
Indices: 72638962--72639094 Score: 223
Period size: 49 Copynumber: 2.7 Consensus size: 49
72638952 ATCTGGTATG
*
72638962 CATAGTAGCCTGCACTTAGTACTACACATGCA-ACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATG-AGACCAATAATCCGGTACA
*
72639011 CGTAGTAGCCTGCACTTAGTACTACACATGAGACCAATAATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGAGACCAATAATCCGGTACA
*
72639060 CATAGTAGCCTGCACTTAGTACTACACATGTGACC
1 CATAGTAGCCTGCACTTAGTACTACACATGAGACC
72639095 TCACAATAGA
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
48 1 0.01
49 78 0.99
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.24
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACATGAGACCAATAATCCGGTACA
Found at i:72639088 original size:26 final size:26
Alignment explanation
Indices: 72639007--72639088 Score: 66
Period size: 26 Copynumber: 3.3 Consensus size: 26
72638997 AATTATCCGG
*
72639007 TACACGTAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
* * * *
72639033 TACACAT-G-AGAC--CA-ATAATCC
1 TACACATAGTAGCCTGCACTTAGTAC
72639054 GGTACACATAGTAGCCTGCACTTAGTAC
1 --TACACATAGTAGCCTGCACTTAGTAC
72639082 TACACAT
1 TACACAT
72639089 GTGACCTCAC
Statistics
Matches: 40, Mismatches: 9, Indels: 14
0.63 0.14 0.22
Matches are distributed among these distances:
21 4 0.10
22 2 0.05
23 7 0.17
24 4 0.10
25 4 0.10
26 13 0.32
27 2 0.05
28 4 0.10
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACTTAGTAC
Found at i:72640391 original size:39 final size:39
Alignment explanation
Indices: 72640346--72640421 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
72640336 GAACAAAAAA
72640346 AAGAGAAATGAGAAACATTCAAGAATGATTATAGTTTAT
1 AAGAGAAATGAGAAACATTCAAGAATGATTATAGTTTAT
72640385 AAGAGAAATGAGAAACATTCAAGAATGATTATAGTTT
1 AAGAGAAATGAGAAACATTCAAGAATGATTATAGTTT
72640422 TCTCCGAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.49, C:0.05, G:0.18, T:0.28
Consensus pattern (39 bp):
AAGAGAAATGAGAAACATTCAAGAATGATTATAGTTTAT
Found at i:72640485 original size:6 final size:6
Alignment explanation
Indices: 72640478--72640511 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
72640468 CCAAATATGG
* *
72640478 AAATGG AAATGA AAATGA AAATGA GAATGA AAAT
1 AAATGA AAATGA AAATGA AAATGA AAATGA AAAT
72640512 TTTCAGTCCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.21, T:0.18
Consensus pattern (6 bp):
AAATGA
Found at i:72643079 original size:23 final size:26
Alignment explanation
Indices: 72643033--72643079 Score: 64
Period size: 23 Copynumber: 1.9 Consensus size: 26
72643023 CATACATTCC
*
72643033 TCATGTCATATAATCACCAACCAATT
1 TCATGTCATATAATCACAAACCAATT
72643059 TCATG-CATAT-ATC-CAAACCAA
1 TCATGTCATATAATCACAAACCAA
72643080 AGCATACCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 7 0.35
24 3 0.15
25 5 0.25
26 5 0.25
ACGTcount: A:0.40, C:0.28, G:0.04, T:0.28
Consensus pattern (26 bp):
TCATGTCATATAATCACAAACCAATT
Found at i:72643112 original size:23 final size:22
Alignment explanation
Indices: 72643073--72643118 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 22
72643063 GCATATATCC
*
72643073 AAACCAAAGCATACCAAATCAT
1 AAACCAAAGCATACCAAAACAT
72643095 AAACCAAAGTCATACCAAAACAT
1 AAACCAAAG-CATACCAAAACAT
72643118 A
1 A
72643119 TGATTCATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.57, C:0.26, G:0.04, T:0.13
Consensus pattern (22 bp):
AAACCAAAGCATACCAAAACAT
Found at i:72645696 original size:40 final size:39
Alignment explanation
Indices: 72645651--72645858 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
72645641 CGGAATACAA
*
72645651 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72645691 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72645731 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
72645771 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
72645811 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
72645851 CCGGATAT
1 CCGGATAT
72645859 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72645791 original size:80 final size:81
Alignment explanation
Indices: 72645651--72645856 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
72645641 CGGAATACAA
* * *
72645651 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
72645715 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
72645731 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
72645794 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
72645811 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
72645857 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:72649554 original size:49 final size:49
Alignment explanation
Indices: 72649442--72649636 Score: 283
Period size: 47 Copynumber: 4.1 Consensus size: 49
72649432 TATCACAGTT
* * *
72649442 ATACACTTCCAC-TTCCATCACATTGACCATTCGGCCTTAT--CATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATATAC
* *
72649489 ATATACTTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
*
72649538 ATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
*
72649585 ATACACTTTCACATTCATCACGTTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
72649634 ATA
1 ATA
72649637 TCTTGTACAT
Statistics
Matches: 133, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
47 78 0.59
48 2 0.02
49 53 0.40
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
Found at i:72649558 original size:96 final size:96
Alignment explanation
Indices: 72649457--72649636 Score: 306
Period size: 96 Copynumber: 1.9 Consensus size: 96
72649447 CTTCCACTTC
* * * *
72649457 CATCACATTGACCATTCGGCCTTATCATATATATATACTTTCACATTCATCACATTGGTCATTCG
1 CATCACATTGACCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCG
72649522 GCCTTATCACATATACATACACCTTCACATT
66 GCCTTATCACATATACATACACCTTCACATT
* *
72649553 CATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACGTTGGCCATTCG
1 CATCACATTGACCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCG
72649618 GCCTTATCACATATACATA
66 GCCTTATCACATATACATA
72649637 TCTTGTACAT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 78 1.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (96 bp):
CATCACATTGACCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCG
GCCTTATCACATATACATACACCTTCACATT
Found at i:72654326 original size:93 final size:93
Alignment explanation
Indices: 72654213--72654383 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72654203 GCCCATAAGT
72654213 GAACTCAGACTCAACTCAACGAGTTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72654277 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
*
72654306 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72654371 CGAGTTCGGATGC
66 CGAGTTCGGATGC
72654384 TCAACCATCC
Statistics
Matches: 76, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72654380 original size:46 final size:46
Alignment explanation
Indices: 72654205--72654380 Score: 227
Period size: 46 Copynumber: 3.8 Consensus size: 46
72654195 TGTAACCCGC
*
72654205 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCAGG-CATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
*
72654251 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
72654301 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
72654344 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72654381 TGCTCAACCA
Statistics
Matches: 113, Mismatches: 7, Indels: 20
0.81 0.05 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 62 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72658330 original size:29 final size:29
Alignment explanation
Indices: 72658291--72658390 Score: 146
Period size: 29 Copynumber: 3.4 Consensus size: 29
72658281 TGGTCCATCT
72658291 CATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
72658320 CATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
* * * *
72658349 TATTCATATGGCCTATTAGGCCCAAATCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
* *
72658378 CCTTTATATGGCC
1 CATTCATATGGCC
72658391 TGTTAGGCCC
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.28
Consensus pattern (29 bp):
CATTCATATGGCCCATCAGGCCCAATTCA
Found at i:72658410 original size:29 final size:29
Alignment explanation
Indices: 72658291--72658407 Score: 144
Period size: 29 Copynumber: 4.0 Consensus size: 29
72658281 TGGTCCATCT
* * *
72658291 CATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCTATTAGGCCCAAATCA
* * *
72658320 CATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCTATTAGGCCCAAATCA
*
72658349 TATTCATATGGCCTATTAGGCCCAAATCA
1 CATTCATATGGCCTATTAGGCCCAAATCA
* * *
72658378 CCTTTATATGGCCTGTTAGGCCCAAATCA
1 CATTCATATGGCCTATTAGGCCCAAATCA
72658407 C
1 C
72658408 CTTATATCCA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 80 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CATTCATATGGCCTATTAGGCCCAAATCA
Found at i:72664515 original size:25 final size:25
Alignment explanation
Indices: 72664487--72664541 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
72664477 TAAAGATTAT
* *
72664487 TCATCATTCAAACATTTATACTTAC
1 TCATCATACAAACATATATACTTAC
** *
72664512 TCATCATACGCACATATATACTTGC
1 TCATCATACAAACATATATACTTAC
72664537 TCATC
1 TCATC
72664542 GTAAATCGAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.33, C:0.27, G:0.04, T:0.36
Consensus pattern (25 bp):
TCATCATACAAACATATATACTTAC
Found at i:72667586 original size:55 final size:53
Alignment explanation
Indices: 72667444--72667631 Score: 153
Period size: 55 Copynumber: 3.5 Consensus size: 53
72667434 TTACCATTGT
* *
72667444 CATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCATTGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGC
* * * * ** * *
72667497 TATGCCTT-AGCATGGTCTTACATGGGATCTTTGCCTTATCGTAGTTTATCAATGC
1 CATGTCTTGA-CATGGTCTTACATGGTATCCTTGCCTTAT-G-AACTCACCAATGC
* * * * * *
72667552 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAGTGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGC
* * * *
72667606 CATGCCTTGGCATGGTATTACTTGGT
1 CATGTCTTGACATGGTCTTACATGGT
72667632 TCCCTTAAAC
Statistics
Matches: 103, Mismatches: 28, Indels: 7
0.75 0.20 0.05
Matches are distributed among these distances:
52 1 0.01
53 32 0.31
54 31 0.30
55 38 0.37
56 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.38
Consensus pattern (53 bp):
CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGC
Found at i:72677223 original size:40 final size:40
Alignment explanation
Indices: 72677146--72677363 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
72677136 AAACCAAGTA
* **
72677146 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGTTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
72677185 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72677225 CCTTCGGGACTGAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
72677265 CCTTCGGGACTTAACCCAGAGATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
72677305 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
72677345 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72677364 TTATCATCCG
Statistics
Matches: 160, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 15 0.09
40 145 0.91
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72679281 original size:23 final size:22
Alignment explanation
Indices: 72679242--72679287 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
72679232 GCATATATCC
*
72679242 AAACCAAAACATACCAAATCAT
1 AAACCAAAACATACCAAAACAT
*
72679264 AAACCAAATTCATACCAAAACAT
1 AAACCAAA-ACATACCAAAACAT
72679287 A
1 A
72679288 TGATTCATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.59, C:0.26, G:0.00, T:0.15
Consensus pattern (22 bp):
AAACCAAAACATACCAAAACAT
Found at i:72680079 original size:42 final size:42
Alignment explanation
Indices: 72679997--72680118 Score: 147
Period size: 42 Copynumber: 2.8 Consensus size: 42
72679987 TCTCAGATGT
* * * *
72679997 GGTCTTACATGTAATCAAGTATCGATGCCACTATCCTAGACAG
1 GGTCTTACATGAAATCAAATAT-GATGCCAATGTCCTAGACAG
* *
72680040 GGTCTTACACGAAATCAAATATGATGCCAATGTCCTAGACAT
1 GGTCTTACATGAAATCAAATATGATGCCAATGTCCTAGACAG
72680082 GGTCTTACATGTAAATATCAAAT-TGATGCCAATGTCC
1 GGTCTTACATG--AA-ATCAAATATGATGCCAATGTCC
72680119 CAGATGTGGT
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
42 27 0.39
43 19 0.28
44 16 0.23
45 7 0.10
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (42 bp):
GGTCTTACATGAAATCAAATATGATGCCAATGTCCTAGACAG
Found at i:72684802 original size:15 final size:16
Alignment explanation
Indices: 72684784--72684817 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
72684774 AAATTAAATT
*
72684784 AATTAA-CTAGATGCA
1 AATTAACCTAAATGCA
72684799 AATTAACCTAAATGCA
1 AATTAACCTAAATGCA
72684815 AAT
1 AAT
72684818 AAGATGACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.50, C:0.15, G:0.09, T:0.26
Consensus pattern (16 bp):
AATTAACCTAAATGCA
Found at i:72687575 original size:20 final size:20
Alignment explanation
Indices: 72687552--72687603 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
72687542 AAAGTAGTTT
72687552 TAAAAAGATAAAA-ATAAAAA
1 TAAAAA-ATAAAACATAAAAA
72687572 T-AAAAATAAAACCATAAAAA
1 TAAAAAATAAAA-CATAAAAA
*
72687592 TAATAAATAAAA
1 TAAAAAATAAAA
72687604 GTCTTTAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 6 0.21
19 4 0.14
20 9 0.32
21 9 0.32
ACGTcount: A:0.77, C:0.04, G:0.02, T:0.17
Consensus pattern (20 bp):
TAAAAAATAAAACATAAAAA
Found at i:72687576 original size:5 final size:6
Alignment explanation
Indices: 72687554--72687603 Score: 64
Period size: 6 Copynumber: 7.7 Consensus size: 6
72687544 AGTAGTTTTA
72687554 AAAAGAT AAAAAT AAAAAT AAAAAT AAAACCAT AAAAAT AATAAAT AAAA
1 AAAA-AT AAAAAT AAAAAT AAAAAT AAAA--AT AAAAAT AA-AAAT AAAA
72687604 GTCTTTAAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
6 24 0.60
7 10 0.25
8 6 0.15
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:72687581 original size:26 final size:27
Alignment explanation
Indices: 72687552--72687603 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
72687542 AAAGTAGTTT
*
72687552 TAAAAAGATAAAAATAA-AAATAAAAA
1 TAAAAACATAAAAATAATAAATAAAAA
*
72687578 TAAAACCATAAAAATAATAAATAAAA
1 TAAAAACATAAAAATAATAAATAAAA
72687604 GTCTTTAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.77, C:0.04, G:0.02, T:0.17
Consensus pattern (27 bp):
TAAAAACATAAAAATAATAAATAAAAA
Found at i:72717117 original size:27 final size:28
Alignment explanation
Indices: 72717087--72717156 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
72717077 ATAGTGAATC
*
72717087 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
72717114 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
72717142 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72717157 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:72717228 original size:42 final size:42
Alignment explanation
Indices: 72717164--72717270 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
72717154 GCTGTACAAT
* *
72717164 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
72717206 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
72717248 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
72717271 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:72724122 original size:27 final size:28
Alignment explanation
Indices: 72724092--72724161 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
72724082 ATAGTGAATC
*
72724092 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
72724119 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
72724147 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72724162 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:72724233 original size:42 final size:42
Alignment explanation
Indices: 72724169--72724275 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
72724159 GCTGTACAAT
* *
72724169 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
72724211 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
72724253 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
72724276 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:72726774 original size:48 final size:48
Alignment explanation
Indices: 72726597--72726777 Score: 204
Period size: 48 Copynumber: 3.8 Consensus size: 48
72726587 CTCACACACT
* * * *
72726597 AAGTGCCAATATCATGGCCCGAAGCCAACTCAATA-TATCTCACACGCG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAA-AGTAACTCGCACCCG
* * ** * *
72726645 AAGTGCTAATATCATGGCCCGTAGCCAAATCATTG-AAGCTCGCACTCA
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAA-CTCGCACCCG
* * *
72726693 AAGTGTCGATATCATGACCCGAAGCCAAATCAAAGTAACTCGCACCCG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAACTCGCACCCG
*
72726741 AAGTGCCAATATCATGGCCGGAAGCCAAATCAAAGTA
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTA
72726778 TCCTCTAATG
Statistics
Matches: 108, Mismatches: 22, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
47 1 0.01
48 105 0.97
49 2 0.02
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.19
Consensus pattern (48 bp):
AAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAACTCGCACCCG
Found at i:72729985 original size:26 final size:26
Alignment explanation
Indices: 72729956--72730012 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
72729946 ATCCTCTCTC
72729956 GAGCCATATAA-CAGGAAACTCACAAA
1 GAGCCAT-TAATCAGGAAACTCACAAA
*
72729982 GAGCCATTAATTAGGAAACTCACAAA
1 GAGCCATTAATCAGGAAACTCACAAA
72730008 GAGCC
1 GAGCC
72730013 TATCAGGAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 3 0.10
26 26 0.90
ACGTcount: A:0.46, C:0.23, G:0.18, T:0.14
Consensus pattern (26 bp):
GAGCCATTAATCAGGAAACTCACAAA
Found at i:72731491 original size:40 final size:40
Alignment explanation
Indices: 72731447--72731595 Score: 237
Period size: 40 Copynumber: 3.7 Consensus size: 40
72731437 GCTACTTGCT
72731447 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
72731487 CAAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
72731527 CAAATGCCTTCGGGACTTAGCCCGG-AATTGGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
72731567 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
72731596 CATCCAAATA
Statistics
Matches: 100, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 98 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:72735785 original size:47 final size:46
Alignment explanation
Indices: 72735668--72735840 Score: 196
Period size: 45 Copynumber: 3.8 Consensus size: 46
72735658 GGATGGTTGA
*
72735668 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAT
* *
72735715 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAA-T
* *
72735758 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAAC
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGC-AAT
*
72735808 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
72735841 TATGGGCGGG
Statistics
Matches: 109, Mismatches: 8, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 6 0.06
43 1 0.01
44 2 0.02
45 30 0.28
46 30 0.28
47 30 0.28
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAT
Found at i:72735836 original size:46 final size:45
Alignment explanation
Indices: 72735672--72735845 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 45
72735662 GGTTGAGCAT
* *
72735672 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
* * *
72735717 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAC---GC
*
72735762 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGC
*
72735810 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72735846 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
42 6 0.05
44 2 0.02
45 29 0.26
46 34 0.31
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
Found at i:72738809 original size:15 final size:15
Alignment explanation
Indices: 72738789--72738857 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
72738779 GTATCTTGGG
72738789 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
72738804 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
72738819 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
72738834 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
72738849 TTTCTTTAT
1 TTTCTTTAT
72738858 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:72738858 original size:30 final size:30
Alignment explanation
Indices: 72738780--72738867 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
72738770 CATAGTATCG
* * * *
72738780 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
72738810 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
72738840 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
72738868 TATTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:72741302 original size:46 final size:48
Alignment explanation
Indices: 72741248--72741382 Score: 163
Period size: 46 Copynumber: 2.9 Consensus size: 48
72741238 ATGGTTGAGC
* *
72741248 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAACAGG
* * * *
72741295 -TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAC-AGG
72741340 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGC
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGC
72741383 TGTGATAGCC
Statistics
Matches: 72, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.08
45 4 0.06
46 28 0.39
47 28 0.39
48 2 0.03
50 4 0.06
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAACAGG
Found at i:72742914 original size:29 final size:27
Alignment explanation
Indices: 72742872--72742974 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
72742862 GTGACGAGAT
*
72742872 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AAT-TA
* *
72742901 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAAT-TA
* * *
72742930 TGGCACTATGTGTGCGGGCTTGAATCA
1 TGGCACTAAGTGTGCGAGCTTGAATTA
72742957 CGTGGCACTAAGTGTGCG
1 --TGGCACTAAGTGTGCG
72742975 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
27 1 0.02
28 3 0.05
29 56 0.92
30 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.29
Consensus pattern (27 bp):
TGGCACTAAGTGTGCGAGCTTGAATTA
Found at i:72750907 original size:40 final size:40
Alignment explanation
Indices: 72750843--72751030 Score: 308
Period size: 40 Copynumber: 4.7 Consensus size: 40
72750833 GCTACTTGCT
72750843 CAAATGCCTT-GGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
72750882 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
72750922 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
72750962 CAAATGCCTTCGGGACTTAGCCCGG-AATTGGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
72751002 CATATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
72751031 CATCCAAATA
Statistics
Matches: 140, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 11 0.08
40 128 0.91
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:72754567 original size:40 final size:40
Alignment explanation
Indices: 72754508--72754715 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
72754498 CAATTGAATG
* * * *
72754508 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
72754548 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
72754588 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
72754628 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
72754668 GTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
72754708 ATATCCGG
1 ATATCCGG
72754716 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:72754646 original size:80 final size:80
Alignment explanation
Indices: 72754510--72754715 Score: 243
Period size: 80 Copynumber: 2.6 Consensus size: 80
72754500 ATTGAATGAT
* * ** * * *
72754510 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
72754575 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
72754590 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* **
72754655 TGTGCAAGTCGTTGT
66 TGTGCAAGTCGCTAC
* *
72754670 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
72754716 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 106 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:72762531 original size:40 final size:40
Alignment explanation
Indices: 72762472--72762679 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
72762462 CAATTGAATG
* * * *
72762472 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
72762512 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
72762552 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
72762592 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
72762632 GTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
72762672 ATATCCGG
1 ATATCCGG
72762680 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:72762610 original size:80 final size:80
Alignment explanation
Indices: 72762474--72762679 Score: 243
Period size: 80 Copynumber: 2.6 Consensus size: 80
72762464 ATTGAATGAT
* * ** * * *
72762474 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
72762539 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
72762554 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* **
72762619 TGTGCAAGTCGTTGT
66 TGTGCAAGTCGCTAC
* *
72762634 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
72762680 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 106 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:72766440 original size:30 final size:29
Alignment explanation
Indices: 72766397--72766460 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
72766387 CAAGTAACCG
72766397 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
*
72766426 AAGCTAGTTTAAATCGTACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
72766456 AAGCT
1 AAGCT
72766461 TCCGATTCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:72770167 original size:39 final size:40
Alignment explanation
Indices: 72770113--72770328 Score: 289
Period size: 39 Copynumber: 5.5 Consensus size: 40
72770103 AAACCAAGTA
** *
72770113 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
72770152 CCTTCGGGACTTAG-CCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72770191 CCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72770231 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72770271 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
72770310 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72770329 TTATCATCCG
Statistics
Matches: 162, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
38 2 0.01
39 80 0.49
40 80 0.49
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72770221 original size:40 final size:40
Alignment explanation
Indices: 72770139--72770332 Score: 286
Period size: 40 Copynumber: 4.9 Consensus size: 40
72770129 GGATATAGCT
* *
72770139 ACTCGCTCAAATGCCTTCGGGACTTAG-CCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATA
72770178 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATA
*
72770218 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATA
* * * *
72770258 ACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-AATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAATA
*
72770297 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
72770333 CATCCGAATT
Statistics
Matches: 141, Mismatches: 10, Indels: 7
0.89 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 58 0.41
40 81 0.57
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATA
Found at i:72770243 original size:79 final size:79
Alignment explanation
Indices: 72770139--72770332 Score: 284
Period size: 79 Copynumber: 2.5 Consensus size: 79
72770129 GGATATAGCT
* *
72770139 ACTCGCTCAAATGCCTTCGGGACTTAG-CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGG-CTT
*
72770203 AGCCCGG-TTATAATA
65 AGCCCGGAAT-TAATA
* *
72770218 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTGCCTTCGGGCTTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGCTTA
* *
72770283 GCCCGGAATTAGTC
66 GCCCGGAATTAATA
*
72770297 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
72770333 CATCCGAATT
Statistics
Matches: 104, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
79 73 0.70
80 31 0.30
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGCTTA
GCCCGGAATTAATA
Found at i:72783129 original size:41 final size:41
Alignment explanation
Indices: 72783084--72783201 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
72783074 TGAAAGATAA
72783084 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
72783125 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72783155 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72783196 ATGTAG
1 ATGTAG
72783202 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:72783140 original size:71 final size:71
Alignment explanation
Indices: 72783052--72783215 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72783042 GAGATGTATC
72783052 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72783117 AGGACA
66 AGGACA
72783123 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72783188 AGGACA
66 AGGACA
72783194 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
72783216 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:72789831 original size:39 final size:40
Alignment explanation
Indices: 72789708--72789873 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
72789698 AAATTGAATG
* * *
72789708 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
72789747 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
72789787 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
72789826 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
72789866 ATATCCGG
1 ATATCCGG
72789874 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:72789840 original size:79 final size:79
Alignment explanation
Indices: 72789708--72789857 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
72789698 AAATTGAATG
*
72789708 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
72789773 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
72789787 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
72789850 ATTTGTGC
64 AATTGTGC
72789858 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:72796880 original size:17 final size:18
Alignment explanation
Indices: 72796838--72796886 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
72796828 AGTTGAAAAG
72796838 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
72796857 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
72796874 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
72796887 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:72797774 original size:40 final size:40
Alignment explanation
Indices: 72797708--72797874 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
72797698 AAATTGAATG
* * *
72797708 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
72797747 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
72797787 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
72797827 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
72797867 ATATCCGG
1 ATATCCGG
72797875 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:72807344 original size:29 final size:27
Alignment explanation
Indices: 72807310--72807412 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
72807300 TACTCAATCA
*
72807310 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
72807339 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
72807368 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
72807397 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
72807413 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:72814916 original size:29 final size:27
Alignment explanation
Indices: 72814882--72814984 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
72814872 TACTCAATCA
*
72814882 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
72814911 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
72814940 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
72814969 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
72814985 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:72818338 original size:2 final size:2
Alignment explanation
Indices: 72818331--72818363 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
72818321 CTATAGCTGA
72818331 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
72818364 ACATGCAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:72819230 original size:20 final size:20
Alignment explanation
Indices: 72819205--72819244 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
72819195 TACACAGAGT
72819205 AAGCTAACTTAGCTTAGTAA
1 AAGCTAACTTAGCTTAGTAA
72819225 AAGCTAACTTAGCTTAGTAA
1 AAGCTAACTTAGCTTAGTAA
72819245 GCCTTAAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (20 bp):
AAGCTAACTTAGCTTAGTAA
Found at i:72824287 original size:21 final size:20
Alignment explanation
Indices: 72824261--72824301 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
72824251 ATTTAATTAT
* *
72824261 TTATATTTATTAATATATTTA
1 TTATATTAATAAAT-TATTTA
72824282 TTATATTAATAAATTATTTA
1 TTATATTAATAAATTATTTA
72824302 ATATTTCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TTATATTAATAAATTATTTA
Found at i:72824288 original size:17 final size:18
Alignment explanation
Indices: 72824249--72824292 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
72824239 TTAAACATAC
72824249 ATAT-TTAAT-TATTTAT
1 ATATATTAATATATTTAT
*
72824265 ATTTATTAATATATTTAT
1 ATATATTAATATATTTAT
72824283 -TATATTAATA
1 ATATATTAATA
72824293 AATTATTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 3 0.12
17 14 0.58
18 7 0.29
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
ATATATTAATATATTTAT
Found at i:72824331 original size:13 final size:14
Alignment explanation
Indices: 72824315--72824356 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
72824305 TTTCAATTTT
72824315 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
72824328 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
72824343 ATTTTAAATAATAT
1 ATTTT-AATAATAT
72824357 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:72824341 original size:16 final size:16
Alignment explanation
Indices: 72824319--72824355 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
72824309 AATTTTATTT
72824319 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
72824336 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
72824351 TAATA
1 TAATA
72824356 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:72825611 original size:2 final size:2
Alignment explanation
Indices: 72825604--72825632 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
72825594 GTTAAAACAA
72825604 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
72825633 GAAACCAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:72831620 original size:24 final size:24
Alignment explanation
Indices: 72831599--72831650 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
72831589 AATCAATGTC
*
72831599 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATGCT
*
72831623 AAATATATTATACTAATAAATACT
1 AAATATATTATACTAATAAATGCT
72831647 AAAT
1 AAAT
72831651 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATGCT
Found at i:72834107 original size:38 final size:38
Alignment explanation
Indices: 72834056--72834134 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
72834046 TTATAAGGCT
*
72834056 CTACGAGACCTTAAAACATGCTTGTATGAGGTTTGGGA
1 CTACGAGACCTTAAAACATGCTTGTACGAGGTTTGGGA
72834094 CTACGAGACCTTAAAACATGCTTGTACGAGGTTTGGGA
1 CTACGAGACCTTAAAACATGCTTGTACGAGGTTTGGGA
72834132 CTA
1 CTA
72834135 AACCGATAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (38 bp):
CTACGAGACCTTAAAACATGCTTGTACGAGGTTTGGGA
Found at i:72835570 original size:43 final size:43
Alignment explanation
Indices: 72835425--72835574 Score: 153
Period size: 43 Copynumber: 3.5 Consensus size: 43
72835415 TATCTTGGAT
* * * *
72835425 ATGGTCTTACATGTTATCAC-ATATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGTAATCACAATA-CAATGCCAATGTCCCAGAC
* * * * *
72835468 AGGGTCTTATACGAAATCA-TATA-ATGATGCCTATGTCCCAGAC
1 ATGGTCTTACACGTAATCACAATACA--ATGCCAATGTCCCAGAC
72835511 ATGGTCTTACACGTAATCACAATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACAATACAATGCCAATGTCCCAGAC
* *
72835554 ATGGTCTTTCATGTAATCACA
1 ATGGTCTTACACGTAATCACA
72835575 TCTCGGCAAT
Statistics
Matches: 87, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
43 83 0.95
44 3 0.03
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACAATACAATGCCAATGTCCCAGAC
Found at i:72842642 original size:29 final size:29
Alignment explanation
Indices: 72842610--72842687 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 29
72842600 ATACCCTCCG
** * *
72842610 AGCTCGCACACCCAGTGCCGTATTTTTTC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
72842639 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
72842668 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
72842688 ATCCCGTCAC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:72845978 original size:26 final size:26
Alignment explanation
Indices: 72845900--72845981 Score: 66
Period size: 25 Copynumber: 3.2 Consensus size: 26
72845890 TTAGGTCCCG
*
72845900 TGTGTGGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
* * *
72845926 --TGTA-TAC-CAGATGGTTAGGCCAC-A
1 TGTGTAGTACTAAG-T-G-CAGGCTACTA
72845950 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
72845976 TGTGTA
1 TGTGTA
72845982 CCTGATAGCT
Statistics
Matches: 41, Mismatches: 7, Indels: 16
0.64 0.11 0.25
Matches are distributed among these distances:
22 2 0.05
23 4 0.10
24 5 0.12
25 12 0.29
26 12 0.29
27 4 0.10
28 2 0.05
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
TGTGTAGTACTAAGTGCAGGCTACTA
Found at i:72846020 original size:51 final size:50
Alignment explanation
Indices: 72845900--72846080 Score: 186
Period size: 50 Copynumber: 3.6 Consensus size: 50
72845890 TTAGGTCCCG
* * * * **
72845900 TGTGTGGTACTAAGTGCAGGCTACTATGTATACCAGATGGTTAGGCCACA
1 TGTGTGGTACTAAGTGCAGGCCACTATGTGTACCAGATGCTTTGATCACA
* * *
72845950 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCTGATAGCTTTGATCACA
1 TGTGTGGTACTAAGTGCAGGCCACTATGTGTACCAGAT-GCTTTGATCACA
* *
72846001 TGTGTGGTACTAAGTGCAGGCCATTATGTGTA--AGAGTGGTTTTGATCACA
1 TGTGTGGTACTAAGTGCAGGCCACTATGTGTACCAGA-T-GCTTTGATCACA
* * * *
72846051 AGTGTGGTACTATGTGAAGGCCACTTTGTG
1 TGTGTGGTACTAAGTGCAGGCCACTATGTG
72846081 AAGAAAGTAG
Statistics
Matches: 111, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 2 0.02
50 72 0.65
51 37 0.33
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.32
Consensus pattern (50 bp):
TGTGTGGTACTAAGTGCAGGCCACTATGTGTACCAGATGCTTTGATCACA
Found at i:72846072 original size:50 final size:50
Alignment explanation
Indices: 72845987--72846125 Score: 167
Period size: 50 Copynumber: 2.8 Consensus size: 50
72845977 GTGTACCTGA
* *
72845987 TAGCTTTGATCACATGTGTGGTACTAAGTGCAGGCCA-TTATGTGTAAG-AG
1 TAGCTTTGATCACAAGTGTGGTACTATGTGCAGGCCACTT-TGTG-AAGAAG
* * *
72846037 TGGTTTTGATCACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAG
1 TAGCTTTGATCACAAGTGTGGTACTATGTGCAGGCCACTTTGTGAAG-AAG
*
72846088 TAGCTTTGA-CTACAAGGGTGGTACTATGTGCAGGCCAC
1 TAGCTTTGATC-ACAAGTGTGGTACTATGTGCAGGCCAC
72846126 CGGGTATCCG
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
49 3 0.04
50 37 0.49
51 36 0.47
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (50 bp):
TAGCTTTGATCACAAGTGTGGTACTATGTGCAGGCCACTTTGTGAAGAAG
Found at i:72847983 original size:18 final size:18
Alignment explanation
Indices: 72847962--72848007 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
72847952 GGGCAACATG
*
72847962 GGCGTGTGGGTTTACACA
1 GGCGTGTGGGTCTACACA
* *
72847980 GGCGTATGGGTCTACACG
1 GGCGTGTGGGTCTACACA
72847998 GGCGTGTGGG
1 GGCGTGTGGG
72848008 ATTTTGGGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.17, G:0.46, T:0.24
Consensus pattern (18 bp):
GGCGTGTGGGTCTACACA
Found at i:72849012 original size:5 final size:5
Alignment explanation
Indices: 72849002--72849033 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
72848992 GATTTTCATG
72849002 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT AT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT AT
72849034 GATTTATGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:72856171 original size:28 final size:28
Alignment explanation
Indices: 72856110--72856207 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
72856100 TCACAAATTG
** * *
72856110 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
72856139 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
72856167 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
72856195 GCACTAAGTGTGC
1 GCACTAAGTGTGC
72856208 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:72872385 original size:43 final size:41
Alignment explanation
Indices: 72872239--72872411 Score: 148
Period size: 43 Copynumber: 4.1 Consensus size: 41
72872229 GATTGCCGAG
* * *
72872239 ATGTGATTACATGTAAGACCATGTCTGGGACATAGCCATTGT
1 ATGTGATAACATGTAAGACCATGTCTGGGACAT-GGCATCGT
* * *
72872281 ATTGTGATTACGTGTAAGACCATGTATGGGACATTGGCATCGTT
1 A-TGTGATAACATGTAAGACCATGTCTGGGACA-TGGCATCG-T
* *** * *
72872325 ATATGATATTGTATAAGACCCTGTCTGGGACAGTGGCATCGAT
1 ATGTGATAACATGTAAGACCATGTCTGGGACA-TGGCATCG-T
* * * *
72872368 ATGTGATAACATGTAAGACCATATCCGGGATATGGCATTGT
1 ATGTGATAACATGTAAGACCATGTCTGGGACATGGCATCGT
72872409 ATG
1 ATG
72872412 AGCTATATTT
Statistics
Matches: 105, Mismatches: 23, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
41 4 0.04
42 8 0.08
43 90 0.86
44 3 0.03
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.31
Consensus pattern (41 bp):
ATGTGATAACATGTAAGACCATGTCTGGGACATGGCATCGT
Found at i:72875087 original size:40 final size:40
Alignment explanation
Indices: 72875030--72875275 Score: 307
Period size: 40 Copynumber: 6.2 Consensus size: 40
72875020 ATTGAATGAT
* * ** * ** *
72875030 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAA
* * * *
72875070 ATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGT-GACTAC
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCG-TTAA
*
72875110 ATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTCGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAA
*
72875150 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAA
72875190 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAA
* * *
72875230 ATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAA
72875270 ATCCGG
1 ATCCGG
72875276 TTGTATTCCG
Statistics
Matches: 184, Mismatches: 18, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
39 3 0.02
40 177 0.96
41 4 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAA
Found at i:72883148 original size:40 final size:40
Alignment explanation
Indices: 72883091--72883336 Score: 314
Period size: 40 Copynumber: 6.2 Consensus size: 40
72883081 ATTGAATGAT
* * ** * * *
72883091 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAA
* * ** *
72883131 ATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTAACTAC
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTAGTTAA
*
72883171 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAA
*
72883211 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAA
*
72883251 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAA
* * *
72883291 ATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAA
72883331 ATCCGG
1 ATCCGG
72883337 TTGTATTCGA
Statistics
Matches: 187, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 3 0.02
40 181 0.97
41 3 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAA
Found at i:72889221 original size:35 final size:35
Alignment explanation
Indices: 72889175--72889242 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
72889165 GCATTACTTA
72889175 GACCCATAAACGAGTATCCTGACTGTCTGATTTCT
1 GACCCATAAACGAGTATCCTGACTGTCTGATTTCT
72889210 GACCCATAAACGAGTATCCTGACTGTCTGATTT
1 GACCCATAAACGAGTATCCTGACTGTCTGATTT
72889243 TTATACTGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (35 bp):
GACCCATAAACGAGTATCCTGACTGTCTGATTTCT
Found at i:72899052 original size:19 final size:20
Alignment explanation
Indices: 72899028--72899070 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
72899018 TGACTATGGC
*
72899028 TTTTAGAAAATCAAATAT-T
1 TTTTAGAAAATAAAATATAT
72899047 TTTTAGAAAATAAAATATAT
1 TTTTAGAAAATAAAATATAT
72899067 TTTT
1 TTTT
72899071 TTAAAAATGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (20 bp):
TTTTAGAAAATAAAATATAT
Found at i:72901387 original size:42 final size:42
Alignment explanation
Indices: 72901276--72901430 Score: 197
Period size: 42 Copynumber: 3.7 Consensus size: 42
72901266 TACCATACCA
* * * **
72901276 ATGCCAAATCCCAGATATGGTCTTACAAG-GGATCTTGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAG-TCTCATATCG
* *
72901318 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
*
72901361 ATGCCATATCCCAGATATGGTCTTACACGAAGCCTCATA-CAG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATC-G
72901403 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
72901431 ATAGTCTTAG
Statistics
Matches: 100, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
41 1 0.01
42 65 0.65
43 33 0.33
44 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:72903353 original size:39 final size:39
Alignment explanation
Indices: 72903310--72903422 Score: 138
Period size: 39 Copynumber: 2.9 Consensus size: 39
72903300 AACATGTTTT
* * *
72903310 TGAGTATTGTGATATATACTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATTTGATTATA
* * *
72903349 TGAGTATTGTAAT-TAATGCTTAAATGATATTTAATTATA
1 TGAGTATTGTGATAT-ATGCTTAAATGTTATTTGATTATA
* *
72903388 TTACTATTGTGATATATGCTTAAATGTTATTTGAT
1 TGAGTATTGTGATATATGCTTAAATGTTATTTGAT
72903423 AATACGTGTA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
38 1 0.02
39 59 0.97
40 1 0.02
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.48
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATTTGATTATA
Found at i:72903535 original size:14 final size:14
Alignment explanation
Indices: 72903516--72903547 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
72903506 TATGACACTA
72903516 GAGTTGGAACTATT
1 GAGTTGGAACTATT
72903530 GAGTTGGAACTATT
1 GAGTTGGAACTATT
72903544 GAGT
1 GAGT
72903548 GTAACACCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.31, T:0.34
Consensus pattern (14 bp):
GAGTTGGAACTATT
Found at i:72916950 original size:51 final size:51
Alignment explanation
Indices: 72916887--72916986 Score: 132
Period size: 51 Copynumber: 2.0 Consensus size: 51
72916877 CTACCCCATA
*
72916887 ACATGTAACACATCC-CTAATGAACACAGACCTCTCAACGAGCTCGGATGTT
1 ACATGTAACACATCCAC-AATGAACACAAACCTCTCAACGAGCTCGGATGTT
* * *
72916938 ACATG-AATCACATCCACCATGAACTCAAACCTCTCAACGAGCTTGGATG
1 ACATGTAA-CACATCCACAATGAACACAAACCTCTCAACGAGCTCGGATG
72916987 CTTGCATCAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
50 2 0.05
51 40 0.93
52 1 0.02
ACGTcount: A:0.34, C:0.30, G:0.15, T:0.21
Consensus pattern (51 bp):
ACATGTAACACATCCACAATGAACACAAACCTCTCAACGAGCTCGGATGTT
Found at i:72920731 original size:12 final size:12
Alignment explanation
Indices: 72920714--72920740 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
72920704 CAGTGAGTTG
72920714 CACGGCCTAACA
1 CACGGCCTAACA
72920726 CACGGCCTAACA
1 CACGGCCTAACA
72920738 CAC
1 CAC
72920741 AGGTATGTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.44, G:0.15, T:0.07
Consensus pattern (12 bp):
CACGGCCTAACA
Found at i:72922495 original size:18 final size:18
Alignment explanation
Indices: 72922474--72922520 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
72922464 GGAACGTTTC
72922474 TCATTTCTATT-TTCCTAT
1 TCATTTCTATTATTCCT-T
*
72922492 TCA-TTCTGTTCATTCCTT
1 TCATTTCTATT-ATTCCTT
72922510 TCATTTCTATT
1 TCATTTCTATT
72922521 CAAACACGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
17 6 0.25
18 7 0.29
19 11 0.46
ACGTcount: A:0.15, C:0.23, G:0.02, T:0.60
Consensus pattern (18 bp):
TCATTTCTATTATTCCTT
Found at i:72927833 original size:28 final size:28
Alignment explanation
Indices: 72927802--72928015 Score: 171
Period size: 28 Copynumber: 7.5 Consensus size: 28
72927792 CTGACTGATT
72927802 TCGCACACATAGTGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * *
72927830 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
*
72927859 TCGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * * * *
72927887 TTGCACACATAGTGCCTCAACTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
* *
72927916 TCTCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * ** *
72927944 TCGCACACATAGTGCCTCAACTATTGATC
1 TCGCACACATAGTG-CTCGATTAAAGAAC
* * * *
72927973 TGGCACACATAGTGCTCGGTTGAAGAGC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* *
72928001 TTGCACACACAGTGC
1 TCGCACACATAGTGC
72928016 CTTATAATTC
Statistics
Matches: 142, Mismatches: 37, Indels: 14
0.74 0.19 0.07
Matches are distributed among these distances:
27 2 0.01
28 75 0.53
29 63 0.44
30 2 0.01
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:72927862 original size:29 final size:29
Alignment explanation
Indices: 72927802--72927987 Score: 159
Period size: 29 Copynumber: 6.5 Consensus size: 29
72927792 CTGACTGATT
* *
72927802 TCGCACACATAGTG-CTCGATTAA-AGAAC
1 TCGCACACATAGTGCCTCAATTAACA-ATC
*
72927830 TCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCCTCAATTAACAATC
* *
72927859 TCGCACACATAGTG-CTCGATTGAAGAA-C
1 TCGCACACATAGTGCCTCAATT-AACAATC
* * *
72927887 TTGCACACATAGTGCCTCAACTACCAATC
1 TCGCACACATAGTGCCTCAATTAACAATC
* * *
72927916 TCTCACACATAGTG-CTCGATTGAAGAA-C
1 TCGCACACATAGTGCCTCAATT-AACAATC
* ***
72927944 TCGCACACATAGTGCCTCAACTATTGATC
1 TCGCACACATAGTGCCTCAATTAACAATC
*
72927973 TGGCACACATAGTGC
1 TCGCACACATAGTGC
72927988 TCGGTTGAAG
Statistics
Matches: 126, Mismatches: 24, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
28 58 0.46
29 67 0.53
30 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (29 bp):
TCGCACACATAGTGCCTCAATTAACAATC
Found at i:72927869 original size:57 final size:57
Alignment explanation
Indices: 72927802--72928017 Score: 324
Period size: 57 Copynumber: 3.8 Consensus size: 57
72927792 CTGACTGATT
* *
72927802 TCGCACACATAGTGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
*
72927859 TCGCACACATAGTGCTCGATTGAAGAACTTGCACACATAGTGCCTCAACTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* ***
72927916 TCTCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTATTGATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* * * * *
72927973 TGGCACACATAGTGCTCGGTTGAAGAGCTTGCACACACAGTGCCT
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCT
72928018 TATAATTCCA
Statistics
Matches: 145, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 145 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.24
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
Found at i:72928095 original size:40 final size:40
Alignment explanation
Indices: 72928027--72928261 Score: 393
Period size: 40 Copynumber: 5.9 Consensus size: 40
72928017 TTATAATTCC
* *
72928027 AGCACGAATGC-CTTCGAGG-TTTAACCCGGATATATCACT
1 AGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCACT
* *
72928066 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
72928106 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
72928146 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
72928186 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
72928226 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
72928262 AACTCTCAAT
Statistics
Matches: 185, Mismatches: 9, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
39 13 0.07
40 172 0.93
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
Found at i:72933242 original size:22 final size:20
Alignment explanation
Indices: 72933192--72933246 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 20
72933182 CCTATGCTTA
*
72933192 AATTCATGAAATTATTGATG
1 AATTCATGAATTTATTGATG
* *
72933212 ATTTGATGAGATTTCATTGATG
1 AATTCATGA-ATTT-ATTGATG
72933234 AATTCATGAATTT
1 AATTCATGAATTT
72933247 TATGATGTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 7 0.25
21 7 0.25
22 14 0.50
ACGTcount: A:0.35, C:0.05, G:0.16, T:0.44
Consensus pattern (20 bp):
AATTCATGAATTTATTGATG
Found at i:72943050 original size:49 final size:49
Alignment explanation
Indices: 72942978--72943324 Score: 658
Period size: 49 Copynumber: 7.1 Consensus size: 49
72942968 ACATAATAAT
72942978 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
72943027 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
72943076 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
*
72943125 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
72943174 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
*
72943223 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
* *
72943272 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
72943321 ATAT
1 ATAT
72943325 ATGTGGTAAA
Statistics
Matches: 294, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 294 1.00
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.27
Consensus pattern (49 bp):
ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
Found at i:72943448 original size:37 final size:36
Alignment explanation
Indices: 72943393--72943479 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
72943383 AACTTAGAAA
72943393 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
72943431 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
72943468 TATGTCCGGGTA
1 TATGTCCGGGTA
72943480 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:72946081 original size:43 final size:43
Alignment explanation
Indices: 72946013--72946095 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 43
72946003 ATATCGTACA
* *
72946013 ATGCCAACGTCCCAGACGTGGTCTTACATGTAACCACATACCG
1 ATGCCAACGTCCCAGACGTGATCTTACATGTAAACACATACCG
*
72946056 ATGCC-ACTGTCCCAGACAG-GATCTTACTTGTAAACACATA
1 ATGCCAAC-GTCCCAGAC-GTGATCTTACATGTAAACACATA
72946096 TCGGAATCAC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 2 0.06
43 32 0.91
44 1 0.03
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGATCTTACATGTAAACACATACCG
Found at i:72950572 original size:27 final size:27
Alignment explanation
Indices: 72950534--72950588 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
72950524 TGTCACCGAG
*
72950534 TAAGAAAGATGCAATCTTGGTTGTGGT
1 TAAGAAAGATGCAATCTGGGTTGTGGT
72950561 TAAGAAAGATGCAATCTGGGTTGTGGT
1 TAAGAAAGATGCAATCTGGGTTGTGGT
72950588 T
1 T
72950589 GATAGATTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.07, G:0.31, T:0.33
Consensus pattern (27 bp):
TAAGAAAGATGCAATCTGGGTTGTGGT
Found at i:72957301 original size:43 final size:43
Alignment explanation
Indices: 72957199--72957352 Score: 159
Period size: 43 Copynumber: 3.6 Consensus size: 43
72957189 ATACCAGATG
* * * *
72957199 TGGTCTTACATGTAATCAAGTATCGATGCCACTGTCCCAGACA
1 TGGTCTTACATGAAATCAAATATCGATGTCAATGTCCCAGACA
* * * * *
72957242 GGGTCTTACACGAAATCAAATA-CGATGTCGATTTCCTAGACA
1 TGGTCTTACATGAAATCAAATATCGATGTCAATGTCCCAGACA
* *
72957284 TGGTCTTACATGTAAATCTAAA-ATCGATGTCAACGTCCCAGACG
1 TGGTCTTACATG-AAATC-AAATATCGATGTCAATGTCCCAGACA
* *
72957328 TGGTATAACATGAAATCAAATATCG
1 TGGTCTTACATGAAATCAAATATCG
72957353 GAAACCCTAT
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
42 28 0.31
43 33 0.37
44 28 0.31
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (43 bp):
TGGTCTTACATGAAATCAAATATCGATGTCAATGTCCCAGACA
Found at i:72961763 original size:43 final size:42
Alignment explanation
Indices: 72961728--72961866 Score: 122
Period size: 44 Copynumber: 3.2 Consensus size: 42
72961718 TCTTATATGC
72961728 AATCAAATATCGATGCCACTATCCCAGACAAGGTCTTACACGA
1 AATCAAATAT-GATGCCACTATCCCAGACAAGGTCTTACACGA
* * *
72961771 AATCAAATATGATGCCGA-TGTCCCAAACATGGTCTTACACGTA
1 AATCAAATATGATGCC-ACTATCCCAGACAAGGTCTTACACG-A
* * * **
72961814 AATCATAAGT-CGATGCCAAC-GTCCCAAACGTGGTCTTACACGA
1 AATCA-AA-TATGATGCC-ACTATCCCAGACAAGGTCTTACACGA
*
72961857 AATCATATAT
1 AATCAAATAT
72961867 TGAATCCTAT
Statistics
Matches: 82, Mismatches: 8, Indels: 13
0.80 0.08 0.13
Matches are distributed among these distances:
41 1 0.01
42 27 0.33
43 23 0.28
44 30 0.37
45 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (42 bp):
AATCAAATATGATGCCACTATCCCAGACAAGGTCTTACACGA
Found at i:72963815 original size:2 final size:2
Alignment explanation
Indices: 72963808--72963837 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
72963798 GGATCTCTAT
72963808 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
72963838 CACATGTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:72966613 original size:68 final size:70
Alignment explanation
Indices: 72966541--72966738 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
72966531 ACACCCTGTA
* * * *
72966541 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
72966603 ATAAAT
65 ATAAAT
*
72966609 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
72966674 ATAAAT
65 ATAAAT
*
72966680 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
72966739 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:72966652 original size:41 final size:41
Alignment explanation
Indices: 72966607--72966724 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
72966597 TGAAAGATAA
72966607 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
72966648 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72966678 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72966719 ATGTAG
1 ATGTAG
72966725 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:72966664 original size:71 final size:71
Alignment explanation
Indices: 72966575--72966738 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72966565 GAGATGTATC
72966575 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72966640 AGGACA
66 AGGACA
72966646 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72966711 AGGACA
66 AGGACA
72966717 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
72966739 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:72969044 original size:12 final size:12
Alignment explanation
Indices: 72969027--72969068 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
72969017 AAAGACAATT
72969027 AATAATTAATAA
1 AATAATTAATAA
*
72969039 AATAA-TATTTAA
1 AATAATTA-ATAA
72969051 AATAATTAATTAA
1 AATAATTAA-TAA
72969064 AATAA
1 AATAA
72969069 ATTGAAAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
11 2 0.08
12 13 0.52
13 10 0.40
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AATAATTAATAA
Found at i:72969054 original size:24 final size:24
Alignment explanation
Indices: 72969027--72969076 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
72969017 AAAGACAATT
*
72969027 AATAATTAA-TAAAATAATATTTAA
1 AATAATTAATTAAAATAA-ATTGAA
72969051 AATAATTAATTAAAATAAATTGAA
1 AATAATTAATTAAAATAAATTGAA
72969075 AA
1 AA
72969077 GGTAAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 16 0.67
25 8 0.33
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (24 bp):
AATAATTAATTAAAATAAATTGAA
Found at i:72970396 original size:31 final size:31
Alignment explanation
Indices: 72970361--72970425 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
72970351 CTTAACTTTA
72970361 TGACTTAAATAAAAA-TTTTAAAATAATTCAG
1 TGACTTAAATAAAAACTTTT-AAATAATTCAG
**
72970392 TGACTTAAATAAAAACTTTTGTATAATTCAG
1 TGACTTAAATAAAAACTTTTAAATAATTCAG
72970423 TGA
1 TGA
72970426 TCATTTTGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 27 0.87
32 4 0.13
ACGTcount: A:0.46, C:0.08, G:0.09, T:0.37
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTTAAATAATTCAG
Found at i:72975448 original size:49 final size:49
Alignment explanation
Indices: 72975372--72975470 Score: 171
Period size: 49 Copynumber: 2.0 Consensus size: 49
72975362 AAGTTTGGAA
*
72975372 CTAGTTTCGATTTTCCAACCAAGTGGTCAATACCTAGTAAGAATGTATG
1 CTAGTTTCGATTTTCCAACCAACTGGTCAATACCTAGTAAGAATGTATG
* *
72975421 CTAGTTTTGATTTTCCAACCGACTGGTCAATACCTAGTAAGAATGTATG
1 CTAGTTTCGATTTTCCAACCAACTGGTCAATACCTAGTAAGAATGTATG
72975470 C
1 C
72975471 CTGCGAAAAC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (49 bp):
CTAGTTTCGATTTTCCAACCAACTGGTCAATACCTAGTAAGAATGTATG
Found at i:72978217 original size:29 final size:27
Alignment explanation
Indices: 72978175--72978277 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
72978165 GTGACGAGAC
*
72978175 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AAT-TA
* *
72978204 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAAT-TA
* * *
72978233 TGGCACTATGTGTGCGGGCTTGAATCA
1 TGGCACTAAGTGTGCGAGCTTGAATTA
72978260 CGTGGCACTAAGTGTGCG
1 --TGGCACTAAGTGTGCG
72978278 TGATTGCGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
27 1 0.02
28 3 0.05
29 56 0.92
30 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.29
Consensus pattern (27 bp):
TGGCACTAAGTGTGCGAGCTTGAATTA
Found at i:72986006 original size:29 final size:27
Alignment explanation
Indices: 72985964--72986066 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
72985954 GTGACAAGAT
*
72985964 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AAT-TA
* *
72985993 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAAT-TA
* * * *
72986022 TGGCACTATGTGTGTGGGCTTGAATCA
1 TGGCACTAAGTGTGCGAGCTTGAATTA
72986049 CGTGGCACTAAGTGTGCG
1 --TGGCACTAAGTGTGCG
72986067 TGATTGCGTA
Statistics
Matches: 59, Mismatches: 12, Indels: 6
0.77 0.16 0.08
Matches are distributed among these distances:
27 1 0.02
28 3 0.05
29 54 0.92
30 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.34, T:0.30
Consensus pattern (27 bp):
TGGCACTAAGTGTGCGAGCTTGAATTA
Found at i:72994988 original size:40 final size:40
Alignment explanation
Indices: 72994933--72995150 Score: 334
Period size: 40 Copynumber: 5.5 Consensus size: 40
72994923 CGGATGATAA
* *
72994933 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
72994973 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72995013 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
72995053 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72995093 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
72995133 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
72995151 TACTTGGTTT
Statistics
Matches: 166, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 17 0.10
40 148 0.89
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:73003227 original size:40 final size:40
Alignment explanation
Indices: 73003172--73003388 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
73003162 CGAATGATAA
* *
73003172 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
73003212 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
73003252 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
73003292 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
73003332 CCGGGCTAAGT-CCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
73003371 CC-AGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
73003389 TACTGGTTTG
Statistics
Matches: 165, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
38 8 0.05
39 32 0.19
40 124 0.75
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:73005510 original size:37 final size:37
Alignment explanation
Indices: 73005457--73005559 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
73005447 CGAATAGCCC
*
73005457 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
73005494 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
73005531 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
73005560 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:73005751 original size:48 final size:48
Alignment explanation
Indices: 73005696--73005943 Score: 379
Period size: 48 Copynumber: 5.1 Consensus size: 48
73005686 CACAATATAC
* * *
73005696 ACATATCTCCTACATATTTCCCACTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
*
73005744 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
* *
73005792 ACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATGT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
73005840 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
*** *
73005888 ACATATCTCATACATATTTTTTATTCACGCCATTCGGCTTTACCACACAT
1 ACATATCTCATACATATTTCACATT-A-GCCATTCGGCTTTACCACATAT
*
73005938 ATATAT
1 ACATAT
73005944 ATTTATCTTG
Statistics
Matches: 186, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
48 159 0.85
49 1 0.01
50 26 0.14
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (48 bp):
ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
Found at i:73009763 original size:28 final size:27
Alignment explanation
Indices: 73009700--73009769 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
73009690 ATAGTGAGTC
*
73009700 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
73009727 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
73009755 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73009770 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Done.