Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 237 of 410
Found at i:73301233 original size:24 final size:24
Alignment explanation
Indices: 73301206--73301257 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
73301196 AAGAAAAATT
*
73301206 AAAATATAAAAATTAAATTAAAACA
1 AAAATATAAAAA-TAAAATAAAACA
*
73301231 AAAATATAAAAATAAAATAAAATA
1 AAAATATAAAAATAAAATAAAACA
73301255 AAA
1 AAA
73301258 TAATGGATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 13 0.52
25 12 0.48
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (24 bp):
AAAATATAAAAATAAAATAAAACA
Found at i:73304762 original size:22 final size:21
Alignment explanation
Indices: 73304715--73304762 Score: 53
Period size: 22 Copynumber: 2.3 Consensus size: 21
73304705 TTTATAACTC
*
73304715 AAAAA-AATTATAAAAAGTTT
1 AAAAAGAATTATAAAAAATTT
**
73304735 CTAAAGAATATATAAAAAATTT
1 AAAAAGAAT-TATAAAAAATTT
73304757 AAAAAG
1 AAAAAG
73304763 CATAAAACAA
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
20 3 0.14
21 3 0.14
22 15 0.71
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (21 bp):
AAAAAGAATTATAAAAAATTT
Found at i:73305571 original size:130 final size:126
Alignment explanation
Indices: 73305400--73305652 Score: 310
Period size: 130 Copynumber: 2.0 Consensus size: 126
73305390 TTTAAACCTA
* * * ** *
73305400 CACCAGTTGAATTAGTAAAACCTTAAATTTACCAGTCAACCAAAGTTTCATTTTAATATAATT-T
1 CACCAATTGAATTAGTAAAAACTTAAATTTACCACTCAACCAAAACTTCATCTTAATA-AATTCT
* * * * *
73305464 ATACATTTTCTTTATTTTAATATGCATAATTTATTATCTCCCTCAGTTGCATATATTAGTAATGT
65 ATACA--TT-TTTATTTTAATA-GCACAATTTATGATCTCCATCAATTGCATATATTAATAATGT
73305529 G
126 G
* * * *
73305530 CACCAATTGGATTGGTAAAAACTTAAATTTACCACTCAACCAAAACTTCATCTTGATAAGTTCTA
1 CACCAATTGAATTAGTAAAAACTTAAATTTACCACTCAACCAAAACTTCATCTTAATAAATTCTA
*
73305595 TACATTTTTATTTTAATAGCACAATTTATGATCTCCATCAATTGTATATATTAATAAT
66 TACATTTTTATTTTAATAGCACAATTTATGATCTCCATCAATTGCATATATTAATAAT
73305653 TTTGTTAATT
Statistics
Matches: 106, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
126 34 0.32
127 12 0.11
128 2 0.02
129 3 0.03
130 55 0.52
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (126 bp):
CACCAATTGAATTAGTAAAAACTTAAATTTACCACTCAACCAAAACTTCATCTTAATAAATTCTA
TACATTTTTATTTTAATAGCACAATTTATGATCTCCATCAATTGCATATATTAATAATGTG
Found at i:73309494 original size:48 final size:48
Alignment explanation
Indices: 73309436--73309860 Score: 281
Period size: 50 Copynumber: 8.7 Consensus size: 48
73309426 GTAGGAAGCT
73309436 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACGTATCAAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACGTATCAAAGTC
* * *
73309484 GATGCCATGTCCTAGACATGGTCTTACACT-GACT-ATTCTGTATC-GAGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCA--C-GTATCAAAGTC
* * * * * *
73309533 TGACGCCATGTCCTAGACATGGTCTTACACTAGCTCTCGTATATCGAGGCC
1 -GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACG--TATCAAAGTC
* * **
73309584 GATGCCATGTCCCAGACATGGTCTTACACT-GACTCTCGT-CCATTTGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCACGTATCA-AAGT--C
* * * * * * * * *
73309634 AATGCCATATCCTAGAAATGGTCTTACACT-G-ACACATCTCATAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACGTATCAAAGTC
* * * * * ***
73309680 GATGCCATGTACCAGACATGATCTTATAATGGCTCTCATC-TATCGGTGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG--CTCA-CGTATCAAAGTC
* * * * * * *
73309730 GATGCCATGTTCCAAACATGGTCTTACACTAGCACTCATATCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACGTATCAAAGTC
* * * * * *
73309778 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACGTATCAAAGTC
73309826 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC
73309861 TCGAATAACC
Statistics
Matches: 295, Mismatches: 61, Indels: 42
0.74 0.15 0.11
Matches are distributed among these distances:
46 23 0.08
47 5 0.02
48 120 0.41
49 8 0.03
50 135 0.46
51 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACGTATCAAAGTC
Found at i:73309735 original size:96 final size:97
Alignment explanation
Indices: 73309436--73309858 Score: 335
Period size: 96 Copynumber: 4.3 Consensus size: 97
73309426 GTAGGAAGCT
* * * * * * *
73309436 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACGTATCAAAGTCGATGCCATGTCCTAGAC
1 GATGCCATAT-CCAGAAATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGAC
* * *
73309501 ATGGTCTTACACTGACTATTC-TGTATCGAG-G-C
65 ATGGTCTTACACTGGCT-CTCATCTATCG-GTGTC
* * * * * * *
73309533 TGACGCCATGTCCTAGACATGGTCTTACACTAGCTCTCGTATATCGAGGCCGATGCCATGTCCCA
1 -GATGCCATATCC-AGAAATGGTCTTACACTAGCACAC--ATATCAATGCCGATGCCATGTCCCA
* * * ** *
73309598 GACATGGTCTTACACTGACTCTCGTCCATTTGTGCC
62 GACATGGTCTTACACTGGCTCTCATCTATCGGTGTC
* * *
73309634 AATGCCATATCCTAGAAATGGTCTTACACT-G-ACACATCTC-ATAGCCGATGCCATGTACCAGA
1 GATGCCATATCC-AGAAATGGTCTTACACTAGCACACATATCAAT-GCCGATGCCATGTCCCAGA
* * *
73309696 CATGATCTTATAATGGCTCTCATCTATCGGTGTC
64 CATGGTCTTACACTGGCTCTCATCTATCGGTGTC
* *
73309730 GATGCCATGTTCCA-AACATGGTCTTACACTAGCACTCATATCAATGCCGATGCCATGTCCCAGA
1 GATGCCAT-ATCCAGAA-ATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGA
* * *
73309794 CATGGTCTTACACTGGCTCACA--TGTCGAG-GTT
64 CATGGTCTTACACTGGCTCTCATCTATCG-GTGTC
* *
73309826 GATGCCATGTCCCAGACATGGTCTTACACTAGC
1 GATGCCATAT-CCAGAAATGGTCTTACACTAGC
73309859 TCTCGAATAA
Statistics
Matches: 267, Mismatches: 43, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
95 4 0.01
96 101 0.38
97 8 0.03
98 77 0.29
99 6 0.02
100 70 0.26
101 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (97 bp):
GATGCCATATCCAGAAATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACA
TGGTCTTACACTGGCTCTCATCTATCGGTGTC
Found at i:73309816 original size:146 final size:145
Alignment explanation
Indices: 73309436--73309862 Score: 418
Period size: 146 Copynumber: 2.9 Consensus size: 145
73309426 GTAGGAAGCT
* * *
73309436 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACGTATCAAAGTCGATGCCATGTCCTAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAATGCCGATGCCATGTCCTAGAC
* * * * *
73309501 ATGGTCTTACACTGACT-A-TTCTGTATCGAGGCTGACGCCATGTCCTAGACATGGTCTTACACT
66 ATGGTCTTACACTGGCTCACATCT-CAT--A-GCTGATGCCATGTCC-AGACATGGTCTTACAAT
*
73309564 AGCTCTCGTATATCGAGGCC
126 AGCTCTCATATATCGAGGCC
*** * *
73309584 GATGCCATGTCCCAGACATGGTCTTACACT-GACTCTCGTCCATTTGTGCCAATGCCATATCCTA
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCGT--ATCAATGCCGATGCCATGTCCTA
* * * * * *
73309648 GAAATGGTCTTACACT-G-ACACATCTCATAGCCGATGCCATGTACCAGACATGATCTTATAATG
63 GACATGGTCTTACACTGGCTCACATCTCATAGCTGATGCCATGT-CCAGACATGGTCTTACAATA
* *
73309711 GCTCTCATCTATCG-GTGTC
127 GCTCTCATATATCGAG-GCC
* * * * *
73309730 GATGCCATGTTCCAAACATGGTCTTACACTAGCACTCATATCAATGCCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAATGCCGATGCCATGTCCTAGAC
* * * *
73309795 ATGGTCTTACACTGGCTCACATGTCGA-GGTTGATGCCATGTCCCAGACATGGTCTTACACTAGC
66 ATGGTCTTACACTGGCTCACATCTC-ATAGCTGATGCCATGT-CCAGACATGGTCTTACAATAGC
73309859 TCTC
129 TCTC
73309863 GAATAACCCT
Statistics
Matches: 225, Mismatches: 43, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
144 32 0.14
145 2 0.01
146 112 0.50
147 6 0.03
148 36 0.16
149 3 0.01
150 34 0.15
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (145 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAATGCCGATGCCATGTCCTAGAC
ATGGTCTTACACTGGCTCACATCTCATAGCTGATGCCATGTCCAGACATGGTCTTACAATAGCTC
TCATATATCGAGGCC
Found at i:73314086 original size:40 final size:40
Alignment explanation
Indices: 73314029--73314192 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
73314019 TGAATGATAC
* * * *
73314029 CCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
73314069 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
73314109 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
73314149 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
73314189 CCGG
1 CCGG
73314193 TTGAATCCCG
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.03
40 94 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:73322202 original size:40 final size:40
Alignment explanation
Indices: 73322145--73322308 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
73322135 TGAATGATAC
* * * *
73322145 CCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
73322185 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
73322225 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
73322265 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
73322305 CCGG
1 CCGG
73322309 TTGAATCCCG
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.03
40 94 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:73328407 original size:40 final size:40
Alignment explanation
Indices: 73328345--73328587 Score: 250
Period size: 40 Copynumber: 6.1 Consensus size: 40
73328335 GGAATTTAAC
** *
73328345 CGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCT
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCT
* * * *
73328385 CGGTTATAGTAACTCGCACAAATGCCTTCGGGATTTAACC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCT
* * *
73328425 CGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCT
73328464 CGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAG-T
1 CGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCT
73328503 CCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAG-T
1 -CGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCT
* * *
73328543 CTGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCC
1 C-GGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCT
73328584 CGGA
1 CGGA
73328588 CATCATTCGA
Statistics
Matches: 175, Mismatches: 18, Indels: 20
0.82 0.08 0.09
Matches are distributed among these distances:
38 2 0.01
39 33 0.19
40 127 0.73
41 13 0.07
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCT
Found at i:73328484 original size:79 final size:79
Alignment explanation
Indices: 73328344--73328587 Score: 271
Period size: 79 Copynumber: 3.1 Consensus size: 79
73328334 CGGAATTTAA
** * * *
73328344 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCTCGGTTATAGTAACTCGCACAAAT
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAAT
*
73328408 GCCTTCGGGATTTAAC
64 GCCTTCGGGATTTAGC
* *
73328424 CCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
73328488 CCTTC-GGATCTTAGT
65 CCTTCGGGAT-TTAGC
* * * * *
73328503 CCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCTGGATATAGTCACTTAGCACAAA-
1 CCGGATATAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAAT
*
73328567 GCCTTCGGGACTTAGC
64 GCCTTCGGGATTTAGC
73328583 CCGGA
1 CCGGA
73328588 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
78 5 0.04
79 65 0.47
80 57 0.41
81 12 0.09
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGC
CTTCGGGATTTAGC
Found at i:73328571 original size:119 final size:120
Alignment explanation
Indices: 73328363--73328587 Score: 298
Period size: 119 Copynumber: 1.9 Consensus size: 120
73328353 GCTACTCGTT
*
73328363 CAAATGCCTTCGGGACATAGCTCGGTTATAGTAACTCGCACAAATGCCTTCGGGATTTAACCCGG
1 CAAATGCCTTCGGGACATAGCTCGGATATAGTAACTCGCACAAATGCCTTCGGGATTTAACCCGG
* * *
73328428 ATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
66 ATATAGTAACTAGCACCAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* **
73328482 CAAATGCCTTC-GGATCTTAG-TCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CATAGCT-CGGATATAGTAACTCGCACAAATGCCTTCGGGAT-TTAACC
* *
73328544 TGGATATAGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGA
63 CGGATATAGTAAC-TAGCACCAAAGCCTTCGGGACTTAGCCCGGA
73328588 CATCATTCGA
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
118 8 0.09
119 69 0.75
120 15 0.16
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCTCGGATATAGTAACTCGCACAAATGCCTTCGGGATTTAACCCGG
ATATAGTAACTAGCACCAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:73332418 original size:93 final size:93
Alignment explanation
Indices: 73332306--73332476 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
73332296 GCCCATAAGT
* *
73332306 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73332371 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
73332399 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73332464 CGAGTTCGGATGC
66 CGAGTTCGGATGC
73332477 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:73332473 original size:46 final size:46
Alignment explanation
Indices: 73332298--73332473 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
73332288 TGTAACCCGC
* * *
73332298 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
73332344 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
73332394 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
73332437 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73332474 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73334272 original size:48 final size:46
Alignment explanation
Indices: 73334214--73334389 Score: 167
Period size: 48 Copynumber: 3.7 Consensus size: 46
73334204 CTATAATCTA
*
73334214 AAAACTTAATATTAAAATACTAAAATATAAAATCGAACAATTTAATTT
1 AAAACTTAATATCAAAATACTAAAATATAAAATC-AA-AATTTAATTT
* * * * *
73334262 AAAACCTAATATCAAAA-CCCAACATTTAAAATCTAAAAAGTTTAATTT
1 AAAACTTAATATCAAAATACTAAAATATAAAATC--AAAA-TTTAATTT
* * * *
73334310 AAAACTTAACATTAAAATATTAAAAATATAAAATTCAAAGATATAATTT
1 AAAACTTAATATCAAAATACT-AAAATATAAAA-TCAAA-ATTTAATTT
*
73334359 AAAACTTAATATCAAAAT-CTAAAATCTAAAA
1 AAAACTTAATATCAAAATACTAAAATATAAAA
73334390 AGAAATTAAT
Statistics
Matches: 102, Mismatches: 20, Indels: 13
0.76 0.15 0.10
Matches are distributed among these distances:
47 24 0.24
48 40 0.39
49 26 0.25
50 10 0.10
51 2 0.02
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.31
Consensus pattern (46 bp):
AAAACTTAATATCAAAATACTAAAATATAAAATCAAAATTTAATTT
Found at i:73334292 original size:76 final size:77
Alignment explanation
Indices: 73334140--73334282 Score: 209
Period size: 76 Copynumber: 1.9 Consensus size: 77
73334130 CCAATTTAAC
** * *
73334140 ACTTAATATTAAAATTTTAAAAATCTAAAATTGAAAGATCTAATTTAAAACCTAATATCAAAACC
1 ACTTAATATTAAAATACTAAAAATATAAAATCGAAAGATCTAATTTAAAACCTAATATCAAAACC
*
73334205 TATAATCTAAAA
66 CATAATCTAAAA
*
73334217 ACTTAATATTAAAATACT-AAAATATAAAATCGAACA-ATTTAATTTAAAACCTAATATCAAAAC
1 ACTTAATATTAAAATACTAAAAATATAAAATCGAA-AGATCTAATTTAAAACCTAATATCAAAAC
73334280 CCA
65 CCA
73334283 ACATTTAAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
76 42 0.71
77 17 0.29
ACGTcount: A:0.54, C:0.13, G:0.02, T:0.31
Consensus pattern (77 bp):
ACTTAATATTAAAATACTAAAAATATAAAATCGAAAGATCTAATTTAAAACCTAATATCAAAACC
CATAATCTAAAA
Found at i:73334389 original size:97 final size:96
Alignment explanation
Indices: 73334214--73334698 Score: 269
Period size: 96 Copynumber: 5.3 Consensus size: 96
73334204 CTATAATCTA
* *
73334214 AAAACTTAATATTAAAATACTAAAATATAAAATCGAACAATTTAATTTAAAACCTAATATCAAAA
1 AAAACTTAACATTAAAATACTAAAATATAAAATCGAACAATATAATTTAAAACCTAATATCAAAA
* *
73334279 CCCAACATTTAAAATCTAAAAAGTTTAATTT
66 CCCAAAATCTAAAATCTAAAAAGTTTAATTT
* *
73334310 AAAACTTAACATTAAAATATTAAAAATATAAAATTC-AA-AGATATAATTTAAAACTTAATATCA
1 AAAACTTAACATTAAAATACT-AAAATATAAAA-TCGAACA-ATATAATTTAAAACCTAATATCA
* * *
73334373 AAATCTAAAATCTAAAA---AGAAA--TTAATATT
63 AAACCCAAAATCTAAAATCTAAAAAGTTTAAT-TT
* *
73334403 AAAA-TCT--CA--AAAAT-CTAAAAT-TGAAAAT------TT-TAATTTAAAACCTAATGTCAA
1 AAAACT-TAACATTAAAATACTAAAATAT-AAAATCGAACAATATAATTTAAAACCTAATATCAA
* * **
73334454 AACCCAAAATCTAAAATAT-AAATGACTAATTT
64 AACCCAAAATCTAAAATCTAAAAAGTTTAATTT
* * * ** * *
73334486 AAAATTTAATATTAAAATATTAAAAATATAATTTCGAA-ATATCTAATTTAAAATCTAATATCAA
1 AAAACTTAACATTAAAATACT-AAAATATAAAATCGAACA-ATATAATTTAAAACCTAATATCAA
* * *** **
73334550 AACCTAAAACCTAAAATCT-AAAAGAAAAAAAT
64 AACCCAAAATCTAAAATCTAAAAAGTTTAATTT
* * * * *
73334582 -ATACTTAA-TTTAAAATATTAAAA-ATCGAAAATCGAAAAAT-TAATTTAAAACTTAATAT-AA
1 AAAACTTAACATTAAAATACTAAAATAT--AAAATCGAACAATATAATTTAAAACCTAATATCAA
* * * *
73334642 AAACCTAAAT-AAAAATCTAATTAA-TTTAATGTT
64 AACCCAAAATCTAAAATCTAA-AAAGTTTAAT-TT
* * *
73334675 TAAACTTAATATTAAGATA-TAAAA
1 AAAACTTAACATTAAAATACTAAAA
73334699 ACCTAAAATT
Statistics
Matches: 301, Mismatches: 54, Indels: 70
0.71 0.13 0.16
Matches are distributed among these distances:
80 33 0.11
81 1 0.00
82 2 0.01
83 7 0.02
84 5 0.02
85 1 0.00
86 2 0.01
87 14 0.05
88 2 0.01
89 13 0.04
90 1 0.00
91 9 0.03
92 19 0.06
93 30 0.10
94 35 0.12
95 15 0.05
96 63 0.21
97 47 0.16
98 2 0.01
ACGTcount: A:0.56, C:0.10, G:0.03, T:0.32
Consensus pattern (96 bp):
AAAACTTAACATTAAAATACTAAAATATAAAATCGAACAATATAATTTAAAACCTAATATCAAAA
CCCAAAATCTAAAATCTAAAAAGTTTAATTT
Found at i:73334415 original size:80 final size:80
Alignment explanation
Indices: 73334315--73334469 Score: 204
Period size: 80 Copynumber: 1.9 Consensus size: 80
73334305 AATTTAAAAC
* * * *
73334315 TTAACATTAAAATATTAAAAATATAAAATTCAAAGA-TATAATTTAAAACTTAATATCAAAATCT
1 TTAACATTAAAATATCAAAAATATAAAATTCAAA-ATTATAATTTAAAACCTAATATCAAAACCC
73334379 AAAATCTAAAAAGAAA
65 AAAATCTAAAAAGAAA
* * * * * *
73334395 TTAATATTAAAATCTCAAAAATCTAAAATTGAAAATTTTAATTTAAAACCTAATGTCAAAACCCA
1 TTAACATTAAAATATCAAAAATATAAAATTCAAAATTATAATTTAAAACCTAATATCAAAACCCA
73334460 AAATCTAAAA
66 AAATCTAAAA
73334470 TATAAATGAC
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
79 1 0.02
80 63 0.98
ACGTcount: A:0.57, C:0.10, G:0.03, T:0.30
Consensus pattern (80 bp):
TTAACATTAAAATATCAAAAATATAAAATTCAAAATTATAATTTAAAACCTAATATCAAAACCCA
AAATCTAAAAAGAAA
Found at i:73334511 original size:176 final size:175
Alignment explanation
Indices: 73334106--73334565 Score: 565
Period size: 176 Copynumber: 2.6 Consensus size: 175
73334096 AAAAAATCTT
* * * * *
73334106 AAAATCTTAAAATATAAAAAAAATCCAATTTAACACTTAATATTAAAATTTTAAAAATCTAAAAT
1 AAAATC-TAAAATAT-AAAAAGA-CTAATTTAAAACTTAATATTAAAATATTAAAAATATAAAAT
* * * *
73334171 TGAAAGATCTAATTTAAAACCTAATATCAAAACCTATAATCT--AAAAACTTAATATTAAAATAC
63 TCAAAGATCTAATTTAAAACTTAATATCAAAACCTAAAATCTAAAAAAAATTAATATTAAAATAC
73334234 TAAAATATAAAATCGAACAATTTAATTTAAAACCTAATATCAAAACCC
128 TAAAATATAAAATCGAACAATTTAATTTAAAACCTAATATCAAAACCC
* * * ** *
73334282 AACATTTAAAATCTAAAAAGTTTAATTTAAAACTTAACATTAAAATATTAAAAATATAAAATTCA
1 AAAATCTAAAATATAAAAAGACTAATTTAAAACTTAATATTAAAATATTAAAAATATAAAATTCA
* *
73334347 AAGATATAATTTAAAACTTAATATCAAAATCTAAAATCTAAAAAGAAATTAATATTAAAAT-CTC
66 AAGATCTAATTTAAAACTTAATATCAAAACCTAAAATCTAAAAA-AAATTAATATTAAAATACT-
* * *
73334411 AAAAATCTAAAATTGAA-AATTTTAATTTAAAACCTAATGTCAAAACCC
129 -AAAATATAAAATCGAACAA-TTTAATTTAAAACCTAATATCAAAACCC
* * *
73334459 AAAATCTAAAATAT-AAATGACTAATTTAAAATTTAATATTAAAATATTAAAAATAT-AATTTCG
1 AAAATCTAAAATATAAAAAGACTAATTTAAAACTTAATATTAAAATATTAAAAATATAAAATTC-
* *
73334522 AAATATCTAATTTAAAA-TCTAATATCAAAACCTAAAACCTAAAA
65 AAAGATCTAATTTAAAACT-TAATATCAAAACCTAAAATCTAAAA
73334566 TCTAAAAGAA
Statistics
Matches: 243, Mismatches: 33, Indels: 16
0.83 0.11 0.05
Matches are distributed among these distances:
173 72 0.30
174 5 0.02
175 18 0.07
176 96 0.40
177 52 0.21
ACGTcount: A:0.55, C:0.11, G:0.02, T:0.31
Consensus pattern (175 bp):
AAAATCTAAAATATAAAAAGACTAATTTAAAACTTAATATTAAAATATTAAAAATATAAAATTCA
AAGATCTAATTTAAAACTTAATATCAAAACCTAAAATCTAAAAAAAATTAATATTAAAATACTAA
AATATAAAATCGAACAATTTAATTTAAAACCTAATATCAAAACCC
Found at i:73343475 original size:228 final size:228
Alignment explanation
Indices: 73343065--73343518 Score: 703
Period size: 228 Copynumber: 2.0 Consensus size: 228
73343055 CGGGTAAAGA
* * * * * *
73343065 CACGGGCGTGTGTCTCAGCCATGTGTGACACTCGGTTAGGTGACATGGTCGTGTGTCCCCTGGTG
1 CACGGGCGTGTGTCTCAACCATATGTGACACTCGGTCAAGTGACACGGTCGTGTGTCACCTGGTG
*
73343130 TTTAATTAGAAACCAAGTCAGTATGCTCCATACGGCCCAGCACACTGGCATGTGACTTGGCCGTG
66 TTTAATTAGAAACCAAGTCAGTATGCTCCACACGGCCCAGCACACTGGCATGTGACTTGGCCGTG
* * *
73343195 TGGCATAAGTCAGTATACCCTACAGTTTTGGCACAGCCTAGCACACGGCCTGGCA-CACGGGCGT
131 TAGCATAAGTCAATATACCCTACAGTTTTGGCACAGCCTAGCACACGGCCTGG-AGCACGGGCAT
* *
73343259 GTGTGGCCATTTATAAGGGCAGACGGGTTGGTCG
195 GTGTGGCCATTTATAAGGGCACACGGGCTGGTCG
*
73343293 CACGGGCGTGTGTCTCAACCGTATGTGACACTCGGTCAAGTGACACGGTCGTGTGTCACCTGGTG
1 CACGGGCGTGTGTCTCAACCATATGTGACACTCGGTCAAGTGACACGGTCGTGTGTCACCTGGTG
*
73343358 TTTAATTAGAAACCAAGTCCGTATGCTCCACACGGCCCAGCACACTGGCATGTGACTTGGCCGTG
66 TTTAATTAGAAACCAAGTCAGTATGCTCCACACGGCCCAGCACACTGGCATGTGACTTGGCCGTG
** * * * *
73343423 TAGCATAAGTCAATATACCCTACAGTTTTGGCATGGCCTATCACATGGCCTGGAGCATGGGTATG
131 TAGCATAAGTCAATATACCCTACAGTTTTGGCACAGCCTAGCACACGGCCTGGAGCACGGGCATG
*
73343488 TGTGGCCATTTCTAAGGGCACACGGGCTGGT
196 TGTGGCCATTTATAAGGGCACACGGGCTGGT
73343519 TACACGAACG
Statistics
Matches: 204, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
227 1 0.00
228 203 1.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (228 bp):
CACGGGCGTGTGTCTCAACCATATGTGACACTCGGTCAAGTGACACGGTCGTGTGTCACCTGGTG
TTTAATTAGAAACCAAGTCAGTATGCTCCACACGGCCCAGCACACTGGCATGTGACTTGGCCGTG
TAGCATAAGTCAATATACCCTACAGTTTTGGCACAGCCTAGCACACGGCCTGGAGCACGGGCATG
TGTGGCCATTTATAAGGGCACACGGGCTGGTCG
Found at i:73344937 original size:57 final size:57
Alignment explanation
Indices: 73344871--73344987 Score: 234
Period size: 57 Copynumber: 2.1 Consensus size: 57
73344861 AAAGAGAGAT
73344871 AAAACCCATCGTTATAAATTATGTCAAGGAAGTGATTCCAAATCGTATATGTTGTTA
1 AAAACCCATCGTTATAAATTATGTCAAGGAAGTGATTCCAAATCGTATATGTTGTTA
73344928 AAAACCCATCGTTATAAATTATGTCAAGGAAGTGATTCCAAATCGTATATGTTGTTA
1 AAAACCCATCGTTATAAATTATGTCAAGGAAGTGATTCCAAATCGTATATGTTGTTA
73344985 AAA
1 AAA
73344988 GCGTGTTGTG
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.32
Consensus pattern (57 bp):
AAAACCCATCGTTATAAATTATGTCAAGGAAGTGATTCCAAATCGTATATGTTGTTA
Found at i:73352916 original size:22 final size:22
Alignment explanation
Indices: 73352888--73352932 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
73352878 CAATCGATTT
73352888 GCTCATTTCCTACTAGACTAAG
1 GCTCATTTCCTACTAGACTAAG
*
73352910 GCTCATTTCCTATTAGACTAAG
1 GCTCATTTCCTACTAGACTAAG
73352932 G
1 G
73352933 AAATGTTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (22 bp):
GCTCATTTCCTACTAGACTAAG
Found at i:73355889 original size:21 final size:19
Alignment explanation
Indices: 73355823--73355891 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 19
73355813 TTGAAGTTCT
*
73355823 ATGTCTCGAGATAATGGAACC
1 ATGTCTCGAG--AATGTAACC
73355844 ATGTCTCGAGAAT-TAACCC
1 ATGTCTCGAGAATGTAA-CC
73355863 TTATGTCTCGAGACGATGTAACC
1 --ATGTCTCGAGA--ATGTAACC
73355886 ATGTCT
1 ATGTCT
73355892 TGAAACTTGA
Statistics
Matches: 41, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
18 2 0.05
19 5 0.12
21 27 0.66
23 4 0.10
24 3 0.07
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (19 bp):
ATGTCTCGAGAATGTAACC
Found at i:73370639 original size:16 final size:16
Alignment explanation
Indices: 73370600--73370671 Score: 83
Period size: 16 Copynumber: 4.5 Consensus size: 16
73370590 TATTTGGTTG
*
73370600 GCTGTTATGGAATA-A
1 GCTGTAATGGAATAGA
* *
73370615 TGCTATAATTGAATAGA
1 -GCTGTAATGGAATAGA
73370632 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
* *
73370648 GCTGTAACGGAATAAA
1 GCTGTAATGGAATAGA
73370664 GCTGTAAT
1 GCTGTAAT
73370672 CAATAATTCA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
16 46 0.98
17 1 0.02
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:73375224 original size:29 final size:31
Alignment explanation
Indices: 73375192--73375259 Score: 77
Period size: 33 Copynumber: 2.2 Consensus size: 31
73375182 AAGAAGAATG
73375192 AAGAAA-A-GAAGAAAGCTCCACACGTGAGA
1 AAGAAAGATGAAGAAAGCTCCACACGTGAGA
* * *
73375221 AAGAAATGGATGAAGAAAGGTCTAGACGTGAGA
1 AAGAAA--GATGAAGAAAGCTCCACACGTGAGA
73375254 AAGAAA
1 AAGAAA
73375260 TGGAAGGGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 6 0.19
32 1 0.03
33 25 0.78
ACGTcount: A:0.51, C:0.10, G:0.28, T:0.10
Consensus pattern (31 bp):
AAGAAAGATGAAGAAAGCTCCACACGTGAGA
Found at i:73375237 original size:33 final size:33
Alignment explanation
Indices: 73375199--73375263 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
73375189 ATGAAGAAAA
73375199 GAAGAAAGCTCCACACGTGAGAAAGAAATGGAT
1 GAAGAAAGCTCCACACGTGAGAAAGAAATGGAT
* * *
73375232 GAAGAAAGGTCTAGACGTGAGAAAGAAATGGA
1 GAAGAAAGCTCCACACGTGAGAAAGAAATGGA
73375264 AGGGTAAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.46, C:0.11, G:0.31, T:0.12
Consensus pattern (33 bp):
GAAGAAAGCTCCACACGTGAGAAAGAAATGGAT
Found at i:73375559 original size:19 final size:18
Alignment explanation
Indices: 73375514--73375559 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
73375504 TTTATTTTAT
73375514 TTTTGC-TTTTGTATTAA
1 TTTTGCATTTTGTATTAA
*
73375531 TTTT-CTATTTTTTATTAAA
1 TTTTGC-ATTTTGTATT-AA
73375550 TTTTGCATTT
1 TTTTGCATTT
73375560 AGAGACGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
16 1 0.04
17 4 0.17
18 8 0.33
19 10 0.42
20 1 0.04
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.67
Consensus pattern (18 bp):
TTTTGCATTTTGTATTAA
Found at i:73377675 original size:30 final size:31
Alignment explanation
Indices: 73377624--73377685 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 31
73377614 TAGTAAAAGT
* *
73377624 AAAATTATATTTTATCTTTTAAAAATAATAA
1 AAAATTATATTTAATCCTTTAAAAATAATAA
*
73377655 AAAATT-TATTTAATCCTTTAAAAATTATAA
1 AAAATTATATTTAATCCTTTAAAAATAATAA
73377685 A
1 A
73377686 GATATAGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 22 0.79
31 6 0.21
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.44
Consensus pattern (31 bp):
AAAATTATATTTAATCCTTTAAAAATAATAA
Found at i:73380081 original size:56 final size:56
Alignment explanation
Indices: 73380003--73380114 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
73379993 AAATATGCAA
*
73380003 AGTATGTGAAACTGAATGATATTAATTGATACCAACATAATGGTAATTTGAAAGAT
1 AGTATGTGAAACTGAACGATATTAATTGATACCAACATAATGGTAATTTGAAAGAT
73380059 AGTATGTGAAACTGAACGATATTAATTGATACCAACATAATGGTAATTTGAAAGAT
1 AGTATGTGAAACTGAACGATATTAATTGATACCAACATAATGGTAATTTGAAAGAT
73380115 TGGAATACTG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.43, C:0.08, G:0.18, T:0.31
Consensus pattern (56 bp):
AGTATGTGAAACTGAACGATATTAATTGATACCAACATAATGGTAATTTGAAAGAT
Found at i:73380403 original size:24 final size:23
Alignment explanation
Indices: 73380356--73380406 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
73380346 GTGATTTATC
*
73380356 GCATTTTTACTGGCAGCTTGTCT
1 GCATTTTTACTGGCAGATTGTCT
*
73380379 GCATTTTTACTGGCAGAATTTTCT
1 GCATTTTTACTGGCAG-ATTGTCT
73380403 GCAT
1 GCAT
73380407 ATTGTTATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 16 0.64
24 9 0.36
ACGTcount: A:0.18, C:0.20, G:0.20, T:0.43
Consensus pattern (23 bp):
GCATTTTTACTGGCAGATTGTCT
Found at i:73386864 original size:11 final size:11
Alignment explanation
Indices: 73386848--73386877 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
73386838 TAACATTAAG
73386848 AATATATATAT
1 AATATATATAT
*
73386859 AATATAAATAT
1 AATATATATAT
73386870 AATATATA
1 AATATATA
73386878 CAATATACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATATAT
Found at i:73387411 original size:17 final size:17
Alignment explanation
Indices: 73387391--73387429 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
73387381 AAAAAAATAA
*
73387391 AAAATAA-AAATAAGAGT
1 AAAATAATAAAGAAGA-T
73387408 AAAATAATAAAGAAGAT
1 AAAATAATAAAGAAGAT
73387425 AAAAT
1 AAAAT
73387430 CACCTTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAATAATAAAGAAGAT
Found at i:73387661 original size:18 final size:18
Alignment explanation
Indices: 73387634--73387698 Score: 64
Period size: 18 Copynumber: 3.7 Consensus size: 18
73387624 GTTTTTTTAT
*
73387634 TTTTTATTTTTTGTTAGG
1 TTTTTCTTTTTTGTTAGG
* *
73387652 TTTTTCTTTTTTCTT--C
1 TTTTTCTTTTTTGTTAGG
73387668 TTTTT-TTTTTTGGGTTAGG
1 TTTTTCTTTTTT--GTTAGG
73387687 TTTTTCTTTTTT
1 TTTTTCTTTTTT
73387699 TTTTTTTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
15 6 0.16
16 5 0.14
17 2 0.05
18 13 0.35
19 5 0.14
20 6 0.16
ACGTcount: A:0.05, C:0.06, G:0.12, T:0.77
Consensus pattern (18 bp):
TTTTTCTTTTTTGTTAGG
Found at i:73387662 original size:32 final size:31
Alignment explanation
Indices: 73387625--73387723 Score: 126
Period size: 32 Copynumber: 3.0 Consensus size: 31
73387615 GATGGCTAGG
*
73387625 TTTTTTTATTTTTTATTTTTTGTTAGGTTTTTC
1 TTTTTTT-TTTTTT-TTTTTGGTTAGGTTTTTC
73387658 TTTTTTCTTCTTTTTTTTTTTGGGTTAGGTTTTTC
1 -TTTTT-TT-TTTTTTTTTTT-GGTTAGGTTTTTC
73387693 TTTTTTTTTTTTTTTTTTGGGTTAGGTTTTT
1 TTTTTTTTTTTTTTTTTT-GGTTAGGTTTTT
73387724 TTGGGGGCTT
Statistics
Matches: 61, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
32 24 0.39
33 2 0.03
34 15 0.25
35 20 0.33
ACGTcount: A:0.05, C:0.04, G:0.13, T:0.78
Consensus pattern (31 bp):
TTTTTTTTTTTTTTTTTTGGTTAGGTTTTTC
Found at i:73387663 original size:27 final size:28
Alignment explanation
Indices: 73387621--73387673 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
73387611 GTTAGATGGC
73387621 TAGGTTTTTTTATTTT-TTATTTTTTGT
1 TAGGTTTTTTTATTTTCTTATTTTTTGT
*
73387648 TAGGTTTTTCTT-TTTTCTTCTTTTTT
1 TAGGTTTTT-TTATTTTCTTATTTTTT
73387674 TTTTTGGGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.08, C:0.06, G:0.09, T:0.77
Consensus pattern (28 bp):
TAGGTTTTTTTATTTTCTTATTTTTTGT
Found at i:73387672 original size:35 final size:32
Alignment explanation
Indices: 73387625--73387723 Score: 137
Period size: 33 Copynumber: 3.0 Consensus size: 32
73387615 GATGGCTAGG
73387625 TTTTTTTATTTTTTATTTTTT-GTTAGGTTTTTC
1 TTTTTTT-TTTTTT-TTTTTTGGTTAGGTTTTTC
73387658 TTTTTTCTTCTTTTTTTTTTTGGGTTAGGTTTTTC
1 TTTTTT-TT-TTTTTTTTTTT-GGTTAGGTTTTTC
*
73387693 TTTTTTTTTTTTTTTTTTGGGTTAGGTTTTT
1 TTTTTTTTTTTTTTTTTTTGGTTAGGTTTTT
73387724 TTGGGGGCTT
Statistics
Matches: 61, Mismatches: 1, Indels: 9
0.86 0.01 0.13
Matches are distributed among these distances:
32 12 0.20
33 23 0.38
34 8 0.13
35 18 0.30
ACGTcount: A:0.05, C:0.04, G:0.13, T:0.78
Consensus pattern (32 bp):
TTTTTTTTTTTTTTTTTTTGGTTAGGTTTTTC
Found at i:73393124 original size:3 final size:3
Alignment explanation
Indices: 73393118--73393163 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
73393108 CAACAACAAC
73393118 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
73393164 CTCAAAATTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:73393205 original size:8 final size:7
Alignment explanation
Indices: 73393118--73393206 Score: 50
Period size: 6 Copynumber: 13.4 Consensus size: 7
73393108 CAACAACAAC
73393118 AATAAT-
1 AATAATA
73393124 AATAAT-
1 AATAATA
73393130 AATAAT-
1 AATAATA
73393136 AATAAT-
1 AATAATA
73393142 AATAAT-
1 AATAATA
73393148 AATAAT-
1 AATAATA
73393154 AATAAT-
1 AATAATA
* *
73393160 AATACTC
1 AATAATA
*
73393167 AA-AATT
1 AATAATA
* *
73393173 TATAACA
1 AATAATA
73393180 AAGTAATA
1 AA-TAATA
73393188 AATAAGTA
1 AATAA-TA
73393196 AATGAATA
1 AAT-AATA
73393204 AAT
1 AAT
73393207 CACAATGATA
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
6 44 0.63
7 8 0.11
8 16 0.23
9 2 0.03
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.30
Consensus pattern (7 bp):
AATAATA
Found at i:73398192 original size:26 final size:27
Alignment explanation
Indices: 73398144--73398199 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
73398134 AATAAAATAC
*
73398144 ATTCTTTATTGCTCTCATAATTTCTGT
1 ATTCGTTATTGCTCTCATAATTTCTGT
*
73398171 ATTCGTTATT-CTCTTCAT-ATTTCTTT
1 ATTCGTTATTGCTC-TCATAATTTCTGT
73398197 ATT
1 ATT
73398200 TTATAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.18, C:0.18, G:0.05, T:0.59
Consensus pattern (27 bp):
ATTCGTTATTGCTCTCATAATTTCTGT
Found at i:73402957 original size:37 final size:37
Alignment explanation
Indices: 73402907--73402981 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
73402897 ACGGAAAAGT
73402907 ATAACACAAAAAAAGCTTTATTTTGATCTTGAATGTG
1 ATAACACAAAAAAAGCTTTATTTTGATCTTGAATGTG
73402944 ATAACACAAAAAAAGCTTTATTTTGATCTTGAATGTG
1 ATAACACAAAAAAAGCTTTATTTTGATCTTGAATGTG
73402981 A
1 A
73402982 CGGGGTTCTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.35
Consensus pattern (37 bp):
ATAACACAAAAAAAGCTTTATTTTGATCTTGAATGTG
Found at i:73403357 original size:101 final size:98
Alignment explanation
Indices: 73403237--73403434 Score: 317
Period size: 101 Copynumber: 2.0 Consensus size: 98
73403227 CTGTTTCCAC
**
73403237 CACTTTAGCCTTCCCTTAGCTTTCAGAGATTAAACAAGAGATTGAGCAACTTCCATTTTCCCTTC
1 CACTTTAGCCCCCCCTTAGCTTTCAGAGATTAAACAAGAGATTGAGCAACTTCCATTTT-CC--C
*
73403302 TTCTTCTCCTCTTCTTCTTTTCC-ATTCATTTTTTTT
63 TTCTTCTCCTCTTCTT-ATTTCCTATTCATTTTTTTT
*
73403338 CACTTTAGCCCCCCCTTAGCTTTCAGAGATTGAACAAGAGATTGAGCAACTTCCATTTTCCCTTC
1 CACTTTAGCCCCCCCTTAGCTTTCAGAGATTAAACAAGAGATTGAGCAACTTCCATTTTCCCTTC
73403403 TTCTCCTCTTCTTATTTCCTATTCATTTTTTT
66 TTCTCCTCTTCTTATTTCCTATTCATTTTTTT
73403435 CTTCTTTTAC
Statistics
Matches: 92, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
97 5 0.05
98 29 0.32
100 2 0.02
101 56 0.61
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (98 bp):
CACTTTAGCCCCCCCTTAGCTTTCAGAGATTAAACAAGAGATTGAGCAACTTCCATTTTCCCTTC
TTCTCCTCTTCTTATTTCCTATTCATTTTTTTT
Found at i:73404148 original size:21 final size:21
Alignment explanation
Indices: 73404109--73404147 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
73404099 TCATAATTCA
73404109 AAAAATAATAATATAAAAATT
1 AAAAATAATAATATAAAAATT
*
73404130 AAAAATTATAAT-TAAAAA
1 AAAAATAATAATATAAAAA
73404148 AAGGTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (21 bp):
AAAAATAATAATATAAAAATT
Found at i:73404260 original size:31 final size:29
Alignment explanation
Indices: 73404190--73404263 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
73404180 ACCTTAGGTT
*
73404190 ACATTTTAGTCACTTATGTTTGAAATGTT
1 ACATTTTAGTCACTTATGTTTGAAATGTA
* ***
73404219 ACGTTTTAGTCACTTATGTTATCGTGTTGTA
1 ACATTTTAGTCACTTATGTT-T-GAAATGTA
73404250 ACATTTTAGTCACT
1 ACATTTTAGTCACT
73404264 GAGCCATTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 19 0.51
30 1 0.03
31 17 0.46
ACGTcount: A:0.24, C:0.14, G:0.15, T:0.47
Consensus pattern (29 bp):
ACATTTTAGTCACTTATGTTTGAAATGTA
Found at i:73404897 original size:17 final size:18
Alignment explanation
Indices: 73404877--73404910 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
73404867 AAGTGAATTA
73404877 AAATTGC-GAAATTAAAT
1 AAATTGCAGAAATTAAAT
73404894 AAATTGCAGAAATTAAA
1 AAATTGCAGAAATTAAA
73404911 ATGAGGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.26
Consensus pattern (18 bp):
AAATTGCAGAAATTAAAT
Found at i:73405646 original size:10 final size:10
Alignment explanation
Indices: 73405627--73405686 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
73405617 TGAAATTTTA
73405627 AAAGATAAAT
1 AAAGATAAAT
73405637 ACAA-ATAAAT
1 A-AAGATAAAT
*
73405647 AAAGATAATT
1 AAAGATAAAT
73405657 AAAGATAAAT
1 AAAGATAAAT
73405667 AAAGATAAAT
1 AAAGATAAAT
73405677 GAAA-ATAAAT
1 -AAAGATAAAT
73405687 CCTAAAATTA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:73406468 original size:26 final size:28
Alignment explanation
Indices: 73406408--73406468 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 28
73406398 AAAATGTTTA
*
73406408 ATATAATTAATAAAAAATATTATTCAAAAG
1 ATATAATTAAT--AAAATATAATTCAAAAG
*
73406438 A-ATAATTAAT-AAATATAATT-AAAAT
1 ATATAATTAATAAAATATAATTCAAAAG
73406463 ATATAA
1 ATATAA
73406469 ATTATTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
25 5 0.18
26 13 0.46
29 9 0.32
30 1 0.04
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (28 bp):
ATATAATTAATAAAATATAATTCAAAAG
Found at i:73408640 original size:24 final size:23
Alignment explanation
Indices: 73408588--73408650 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 23
73408578 TCATGTACAC
*
73408588 ATTATTTATATTATTTTTATGATT
1 ATTATTTAT-TTATTTTTATGACT
*
73408612 TTTATTGTATTTATTTTTACT-ACT
1 ATTATT-TATTTATTTTTA-TGACT
73408636 ATTATTATATTTATT
1 ATTATT-TATTTATT
73408651 ATTAGTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 29 0.88
25 4 0.12
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (23 bp):
ATTATTTATTTATTTTTATGACT
Found at i:73408665 original size:24 final size:24
Alignment explanation
Indices: 73408614--73408678 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 24
73408604 TTATGATTTT
* * *
73408614 TATTGTATTTATTTTTACTACTAT
1 TATTATATTTATTATTACTACTAG
* *
73408638 TATTATATTTATTATTAGTATTAG
1 TATTATATTTATTATTACTACTAG
* *
73408662 TATTATAATTACTATTA
1 TATTATATTTATTATTA
73408679 TTACACTCAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (24 bp):
TATTATATTTATTATTACTACTAG
Found at i:73408892 original size:9 final size:9
Alignment explanation
Indices: 73408849--73408919 Score: 56
Period size: 9 Copynumber: 7.9 Consensus size: 9
73408839 AATGTGTATG
73408849 TATTATATA
1 TATTATATA
* *
73408858 TATTTTTTAA
1 TATTATAT-A
*
73408868 TACTATAT-
1 TATTATATA
73408876 TATGTATATA
1 TAT-TATATA
*
73408886 TTTTATATA
1 TATTATATA
73408895 TATTATATA
1 TATTATATA
* *
73408904 TA-TATTTT
1 TATTATATA
73408912 TATTATAT
1 TATTATAT
73408920 TTTTATGTAT
Statistics
Matches: 47, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
8 8 0.17
9 31 0.66
10 8 0.17
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (9 bp):
TATTATATA
Found at i:73408918 original size:11 final size:13
Alignment explanation
Indices: 73408854--73408936 Score: 72
Period size: 11 Copynumber: 6.8 Consensus size: 13
73408844 GTATGTATTA
73408854 TATATATTTT-T-
1 TATATATTTTATG
*
73408865 TAATACTATATTATG
1 T-ATA-TATTTTATG
73408880 TATATATTTTA--
1 TATATATTTTATG
* *
73408891 TATATATTATATA
1 TATATATTTTATG
73408904 TATAT-TTTTAT-
1 TATATATTTTATG
73408915 TATAT-TTTTATG
1 TATATATTTTATG
73408927 TATATATTTT
1 TATATATTTT
73408937 TAATATCACA
Statistics
Matches: 60, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
11 22 0.37
12 13 0.22
13 20 0.33
14 4 0.07
15 1 0.02
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.63
Consensus pattern (13 bp):
TATATATTTTATG
Found at i:73408950 original size:25 final size:24
Alignment explanation
Indices: 73408849--73408942 Score: 113
Period size: 25 Copynumber: 4.0 Consensus size: 24
73408839 AATGTGTATG
73408849 TATTATATATAT-TTTTTAATACTA
1 TATTATATATATATTTTTAATA-TA
*
73408873 TATTATGTATATA-TTTT-ATATA
1 TATTATATATATATTTTTAATATA
*
73408895 TATTATATATATATTTTTATTATA
1 TATTATATATATATTTTTAATATA
* *
73408919 TTTTTATGTATATATTTTTAATAT
1 -TATTATATATATATTTTTAATAT
73408943 CACATTATCC
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
22 14 0.23
23 7 0.12
24 19 0.32
25 20 0.33
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.62
Consensus pattern (24 bp):
TATTATATATATATTTTTAATATA
Found at i:73409129 original size:20 final size:20
Alignment explanation
Indices: 73409092--73409130 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
73409082 ATATATATAT
* * *
73409092 ATATATTTTTTTCTTTATTC
1 ATATATTATTATCATTATTC
73409112 ATATATTATTATCATTATT
1 ATATATTATTATCATTATT
73409131 TTCACTTTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (20 bp):
ATATATTATTATCATTATTC
Found at i:73409315 original size:26 final size:26
Alignment explanation
Indices: 73409285--73409335 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
73409275 ATTATGTATA
*
73409285 TATTTTTAATACTACATATATATTTT
1 TATTTCTAATACTACATATATATTTT
* *
73409311 TATTTCTATTATTACATATATATTT
1 TATTTCTAATACTACATATATATTT
73409336 AATACATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (26 bp):
TATTTCTAATACTACATATATATTTT
Found at i:73411665 original size:7 final size:7
Alignment explanation
Indices: 73411653--73411724 Score: 108
Period size: 7 Copynumber: 10.3 Consensus size: 7
73411643 ACCTTCCAAG
73411653 CCCTTTC
1 CCCTTTC
73411660 CCCTTTC
1 CCCTTTC
73411667 CCCTTTC
1 CCCTTTC
73411674 CCCTTTC
1 CCCTTTC
73411681 CCCTTTC
1 CCCTTTC
73411688 CCCTTTC
1 CCCTTTC
*
73411695 CACTTTC
1 CCCTTTC
*
73411702 CACTTTC
1 CCCTTTC
*
73411709 CACTTTC
1 CCCTTTC
*
73411716 CACTTTC
1 CCCTTTC
73411723 CC
1 CC
73411725 ATTAAAACCA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 63 1.00
ACGTcount: A:0.06, C:0.53, G:0.00, T:0.42
Consensus pattern (7 bp):
CCCTTTC
Found at i:73412365 original size:17 final size:18
Alignment explanation
Indices: 73412339--73412386 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
73412329 AGGCTAAGCT
*
73412339 TTAATATATTTTATTTAC
1 TTAATTTATTTTATTTAC
*
73412357 -TAATTTATTTTATTTGC
1 TTAATTTATTTTATTTAC
73412374 TTAATTTAATTTT
1 TTAATTT-ATTTT
73412387 GCAATCTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 15 0.58
18 6 0.23
19 5 0.19
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (18 bp):
TTAATTTATTTTATTTAC
Found at i:73412779 original size:18 final size:17
Alignment explanation
Indices: 73412758--73412809 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 17
73412748 TGGTAAATTA
73412758 ATAAAAATATCAAAATGT
1 ATAAAAATAT-AAAATGT
*
73412776 ATAATAAAAATAAAATGT
1 ATAA-AAATATAAAATGT
73412794 ATAAAAATATTAAAAT
1 ATAAAAATA-TAAAAT
73412810 AAAATTTTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (17 bp):
ATAAAAATATAAAATGT
Found at i:73413985 original size:9 final size:9
Alignment explanation
Indices: 73413973--73414006 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
73413963 TTTGGTTATT
73413973 TTTTATATG
1 TTTTATATG
73413982 TTTTATAAT-
1 TTTTAT-ATG
73413991 TTTTATATG
1 TTTTATATG
73414000 TTTTATA
1 TTTTATA
73414007 CTTATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 2 0.09
9 19 0.83
10 2 0.09
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (9 bp):
TTTTATATG
Found at i:73413995 original size:18 final size:18
Alignment explanation
Indices: 73413972--73414006 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
73413962 ATTTGGTTAT
73413972 TTTTTATATGTTTTATAA
1 TTTTTATATGTTTTATAA
73413990 TTTTTATATGTTTTATA
1 TTTTTATATGTTTTATA
73414007 CTTATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (18 bp):
TTTTTATATGTTTTATAA
Found at i:73414966 original size:4 final size:4
Alignment explanation
Indices: 73414957--73414989 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
73414947 GTAAGTTAAA
*
73414957 AAAG AAAG AAAG AAAG AAAG AAAG ATAG AAAG A
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG A
73414990 GTTACAGAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (4 bp):
AAAG
Found at i:73425514 original size:4 final size:4
Alignment explanation
Indices: 73425505--73425537 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
73425495 AGCAAACGTG
73425505 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
73425538 TAGAAAAGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:73434380 original size:93 final size:93
Alignment explanation
Indices: 73434270--73434440 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
73434260 GCCCCTAAGT
* *
73434270 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
73434335 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* ** *
73434363 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
73434428 CGAGTTCGGATGC
66 CGAGTTCGGATGC
73434441 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:73434437 original size:46 final size:46
Alignment explanation
Indices: 73434265--73434437 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
73434255 AACCTGCCCC
* * * *
73434265 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
* *
73434311 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTACATCCA
* * *
73434359 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
73434404 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73434438 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
Found at i:73435885 original size:7 final size:7
Alignment explanation
Indices: 73435873--73435911 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
73435863 GGCCTCTCCA
73435873 TTTTTTC
1 TTTTTTC
73435880 TTTTTTC
1 TTTTTTC
73435887 -TTTTTC
1 TTTTTTC
73435893 TTTTTT-
1 TTTTTTC
*
73435899 TTTCTTC
1 TTTTTTC
73435906 TTTTTT
1 TTTTTT
73435912 TCCTTTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 11 0.39
7 17 0.61
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTTC
Found at i:73435901 original size:23 final size:22
Alignment explanation
Indices: 73435873--73435922 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
73435863 GGCCTCTCCA
* *
73435873 TTTTTTCTTTTTTCTTTTTCTTT
1 TTTTTTCTTCTTT-TTTTCCTTT
73435896 TTTTTTCTTCTTTTTTTCCTTT
1 TTTTTTCTTCTTTTTTTCCTTT
73435918 TTTTT
1 TTTTT
73435923 GAAATAGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 13 0.52
23 12 0.48
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (22 bp):
TTTTTTCTTCTTTTTTTCCTTT
Found at i:73435906 original size:19 final size:20
Alignment explanation
Indices: 73435873--73435910 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
73435863 GGCCTCTCCA
*
73435873 TTTTTTCTTTTTTCTTTTTC
1 TTTTTTCTTTCTTCTTTTTC
73435893 TTTTTT-TTTCTTCTTTTT
1 TTTTTTCTTTCTTCTTTTT
73435911 TTCCTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (20 bp):
TTTTTTCTTTCTTCTTTTTC
Found at i:73435922 original size:13 final size:12
Alignment explanation
Indices: 73435873--73435912 Score: 62
Period size: 13 Copynumber: 3.2 Consensus size: 12
73435863 GGCCTCTCCA
73435873 TTTTTTCTTTTT
1 TTTTTTCTTTTT
73435885 TCTTTTTCTTTTT
1 T-TTTTTCTTTTT
73435898 TTTTCTTCTTTTT
1 TTTT-TTCTTTTT
73435911 TT
1 TT
73435913 CCTTTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.15
13 22 0.85
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (12 bp):
TTTTTTCTTTTT
Found at i:73441563 original size:23 final size:22
Alignment explanation
Indices: 73441533--73441577 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
73441523 AAATTAAATC
73441533 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
* *
73441556 TCTAAGATTGCATATCATATCT
1 TCTAAGATTACAAATCATATCT
73441578 AAGATTGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:73441592 original size:18 final size:19
Alignment explanation
Indices: 73441556--73441720 Score: 277
Period size: 19 Copynumber: 8.9 Consensus size: 19
73441546 AATCATATCT
73441556 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
73441575 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
73441593 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
73441610 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
73441629 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
73441647 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
73441665 TCTAAGATTGCATCTCATA
1 TCTAAGATTGCATATCATA
*
73441684 TCTAAGATTGCATCTCATA
1 TCTAAGATTGCATATCATA
73441703 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
73441721 TGAAGATTAT
Statistics
Matches: 140, Mismatches: 2, Indels: 8
0.93 0.01 0.05
Matches are distributed among these distances:
17 16 0.11
18 52 0.37
19 72 0.51
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:73441624 original size:54 final size:55
Alignment explanation
Indices: 73441556--73441720 Score: 278
Period size: 54 Copynumber: 3.0 Consensus size: 55
73441546 AATCATATCT
*
73441556 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTG-TATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGCAATCATA
73441610 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGCAATCATA
* *
73441665 TCTAAGATTGCATCTCATATCTAAGATTGCATCTCATATCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCATATCTAAGATTGCA-ATCAT
73441721 TGAAGATTAT
Statistics
Matches: 105, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
54 47 0.45
55 36 0.34
56 17 0.16
57 5 0.05
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (55 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGCAATCATA
Found at i:73443891 original size:7 final size:7
Alignment explanation
Indices: 73443881--73443930 Score: 66
Period size: 7 Copynumber: 7.0 Consensus size: 7
73443871 TATGTATGCC
73443881 ATATGAT
1 ATATGAT
73443888 ATATGAT
1 ATATGAT
73443895 ATATGAT
1 ATATGAT
73443902 ATAAAT-AT
1 AT--ATGAT
*
73443910 GTATGAT
1 ATATGAT
73443917 ATATGAT
1 ATATGAT
73443924 ATATGAT
1 ATATGAT
73443931 TATAATATGC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
6 2 0.05
7 31 0.82
8 3 0.08
9 2 0.05
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (7 bp):
ATATGAT
Found at i:73443911 original size:36 final size:35
Alignment explanation
Indices: 73443871--73443938 Score: 100
Period size: 36 Copynumber: 1.9 Consensus size: 35
73443861 AATATGTGTG
* *
73443871 TATGTATGCCATATGATATATGATATATGATATAAA
1 TATGTATGACATATGATATATGAT-TATAATATAAA
*
73443907 TATGTATGATATATGATATATGATTATAATAT
1 TATGTATGACATATGATATATGATTATAATAT
73443939 GCATGTGTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 7 0.24
36 22 0.76
ACGTcount: A:0.41, C:0.03, G:0.13, T:0.43
Consensus pattern (35 bp):
TATGTATGACATATGATATATGATTATAATATAAA
Found at i:73443915 original size:29 final size:29
Alignment explanation
Indices: 73443882--73443939 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
73443872 ATGTATGCCA
73443882 TATGATATATGATATATGA-TATAAATATG
1 TATGATATATGATATATGATTAT-AATATG
73443911 TATGATATATGATATATGATTATAATATG
1 TATGATATATGATATATGATTATAATATG
73443940 CATGTGTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 25 0.89
30 3 0.11
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (29 bp):
TATGATATATGATATATGATTATAATATG
Found at i:73444178 original size:5 final size:5
Alignment explanation
Indices: 73444162--73444233 Score: 54
Period size: 5 Copynumber: 14.4 Consensus size: 5
73444152 GGGGCAGGAC
* * * ** * **
73444162 ATGAT ATAAT ATGAT ATGCT ATGTT ACAAT ATGAT ATGAT ATGCT ACAAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
* *
73444212 ATGTT ATGAT ATGAT AAGAT AT
1 ATGAT ATGAT ATGAT ATGAT AT
73444234 AATCTTTACG
Statistics
Matches: 48, Mismatches: 19, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
5 48 1.00
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.39
Consensus pattern (5 bp):
ATGAT
Found at i:73444233 original size:20 final size:20
Alignment explanation
Indices: 73444162--73444227 Score: 87
Period size: 20 Copynumber: 3.3 Consensus size: 20
73444152 GGGGCAGGAC
* *
73444162 ATGATATAATATGATATGCT
1 ATGATACAATATGATATGAT
*
73444182 ATGTTACAATATGATATGAT
1 ATGATACAATATGATATGAT
* *
73444202 ATGCTACAATATGTTATGAT
1 ATGATACAATATGATATGAT
73444222 ATGATA
1 ATGATA
73444228 AGATATAATC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.39, C:0.06, G:0.15, T:0.39
Consensus pattern (20 bp):
ATGATACAATATGATATGAT
Found at i:73457696 original size:55 final size:55
Alignment explanation
Indices: 73457612--73457722 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
73457602 TTCAGTTGTC
73457612 TGTCGGTGTTGTTTTTTTATGGTCAATAAGTTATGGTTGTTATGATGATGAATTA
1 TGTCGGTGTTGTTTTTTTATGGTCAATAAGTTATGGTTGTTATGATGATGAATTA
73457667 TGTCGGTGTTGTTTTTTTATGGTCAATAAGTTATGGTTGTTATGATGATGAATTA
1 TGTCGGTGTTGTTTTTTTATGGTCAATAAGTTATGGTTGTTATGATGATGAATTA
73457722 T
1 T
73457723 CTTCATTGAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.22, C:0.04, G:0.25, T:0.50
Consensus pattern (55 bp):
TGTCGGTGTTGTTTTTTTATGGTCAATAAGTTATGGTTGTTATGATGATGAATTA
Found at i:73459954 original size:130 final size:129
Alignment explanation
Indices: 73459799--73460036 Score: 422
Period size: 130 Copynumber: 1.8 Consensus size: 129
73459789 GAAAAAAAGG
* *
73459799 AATTATATTATTTCCAAAAGGATATTAGTTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
1 AATTATATTATTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
73459864 TATAACTGTTTATATTAATAAATTCGGTAAAAATATATACAATTTATGAATTAAATTCATATATT
66 TATAACTGTTTATATTAATAAATTCGGT-AAAATATATACAATTTATGAATTAAATTCATATATT
* *
73459929 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAC
1 AATTATATTATTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
*
73459994 TATAACTGTTTATATTAATAAATTCGGTAGAATATATACAATT
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATT
73460037 AATATTTTGT
Statistics
Matches: 103, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
129 14 0.14
130 89 0.86
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.44
Consensus pattern (129 bp):
AATTATATTATTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTTATGAATTAAATTCATATATT
Found at i:73461512 original size:17 final size:17
Alignment explanation
Indices: 73461490--73461524 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
73461480 TGCTATACAA
73461490 ATACAACCATTTAACTT
1 ATACAACCATTTAACTT
73461507 ATACAACCATTTAACTT
1 ATACAACCATTTAACTT
73461524 A
1 A
73461525 CTCAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.23, G:0.00, T:0.34
Consensus pattern (17 bp):
ATACAACCATTTAACTT
Found at i:73464941 original size:39 final size:39
Alignment explanation
Indices: 73464897--73465289 Score: 651
Period size: 39 Copynumber: 10.1 Consensus size: 39
73464887 ATTATATTAT
* * *
73464897 CAGCACAAAGCCTGTGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
73464936 CAGCACGAAGCCTGCGGGACTTTGGCCCTGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
73464975 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
73465014 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
73465053 CAGCACAAAGCCTGCGGGACTTTAGCCTGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
73465092 CAGCACGAAGCCTGTGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
73465131 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
73465170 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
73465209 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
73465248 CAGCACGAAGCCTGCGAGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
73465287 CAG
1 CAG
73465290 TGTCTTGCAT
Statistics
Matches: 328, Mismatches: 26, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 328 1.00
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:73470937 original size:39 final size:39
Alignment explanation
Indices: 73470893--73471201 Score: 534
Period size: 39 Copynumber: 8.0 Consensus size: 39
73470883 ATTATATTAT
* *
73470893 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
73470932 CAGCACGAAGCCT--GGGACTTTGGCCCGGATAC-TTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
73470968 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
73471007 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
73471046 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
73471085 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
73471124 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
73471163 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
73471202 AGTGTCTTGC
Statistics
Matches: 255, Mismatches: 12, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
36 17 0.07
37 17 0.07
38 18 0.07
39 203 0.80
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:73476929 original size:39 final size:39
Alignment explanation
Indices: 73476803--73477191 Score: 651
Period size: 39 Copynumber: 10.1 Consensus size: 39
73476793 ATTATATTAT
* *
73476803 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTT-
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
73476841 CAGCACGAAGCCTACGGGACTTTGGCCCGGATAC-TTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
73476879 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
73476918 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
73476957 CAGCACGAAGCCTGCGGGACTTTAG-CCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
73476995 CAGCACGAAGCCTGC-GGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
73477033 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
73477072 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
73477111 CAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
73477150 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
73477189 CAG
1 CAG
73477192 TGTCTTGCAT
Statistics
Matches: 327, Mismatches: 20, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
37 11 0.03
38 116 0.35
39 200 0.61
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:73477033 original size:154 final size:154
Alignment explanation
Indices: 73476795--73477191 Score: 683
Period size: 154 Copynumber: 2.6 Consensus size: 154
73476785 AACCCGAAAT
* * *
73476795 TATATTAT-CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTT-CAGCACGAAGCCTACGG
1 TATATT-TCCAGCACGAAGCCTGCGGGACTTT-AGCCGGATACATTTCCAGCACGAAGCCTGCGG
*
73476858 GACTTTGGCCCGGATACTTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCA
64 GACTTTGGCCCGGATAATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCA
73476923 CGAAGCCTGCGGGACTTTGGCCCGGA
129 CGAAGCCTGCGGGACTTTGGCCCGGA
73476949 TATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCGGATACATTTCCAGCACGAAGCCTGC-GGA
1 TATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCGGATACATTTCCAGCACGAAGCCTGCGGGA
73477013 CTTTGGCCCGGATATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCAC
66 CTTTGGCCCGGATA-ATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCAC
73477078 GAAGCCTGCGGGACTTTGGCCCGGA
130 GAAGCCTGCGGGACTTTGGCCCGGA
73477103 TATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTTCCAGCACGAAGCCTGCGGG
1 TATATTTCCAGCACGAAGCCTGCGGGACTTTAGCC-GGATACATTTCCAGCACGAAGCCTGCGGG
*
73477168 ACTTTAGCCCGGATACATTTCCAG
65 ACTTTGGCCCGGATA-ATTTCCAG
73477192 TGTCTTGCAT
Statistics
Matches: 232, Mismatches: 6, Indels: 8
0.94 0.02 0.03
Matches are distributed among these distances:
153 31 0.13
154 151 0.65
155 26 0.11
156 24 0.10
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (154 bp):
TATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCGGATACATTTCCAGCACGAAGCCTGCGGGA
CTTTGGCCCGGATAATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
AAGCCTGCGGGACTTTGGCCCGGA
Found at i:73482132 original size:49 final size:49
Alignment explanation
Indices: 73482076--73482262 Score: 252
Period size: 49 Copynumber: 3.8 Consensus size: 49
73482066 TAGCCAAAGC
*
73482076 TATCTGGTACGA-ATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTAC-ACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * *
73482125 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACC-AAT
* *
73482175 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* **
73482224 AAT-TCGGTACACGTAGTAGCCTATACTTAGTACTACACA
1 TATCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACA
73482263 CGTGACCTCA
Statistics
Matches: 122, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
48 2 0.02
49 76 0.62
50 44 0.36
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:73482252 original size:99 final size:99
Alignment explanation
Indices: 73482089--73482270 Score: 321
Period size: 99 Copynumber: 1.8 Consensus size: 99
73482079 CTGGTACGAA
* *
73482089 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCCTACACTTA
73482154 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGTGACCTAACCATCTGATACACG
*
73482188 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAAT-TCGGTACACGTAGTAGCCTATACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCT-GGTACACGTAGTAGCCTACACTT
73482252 AGTACTACACACGTGACCT
65 AGTACTACACACGTGACCT
73482271 CACAATAGAT
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
98 1 0.01
99 78 0.99
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCCTACACTTA
GTACTACACACGTGACCTAACCATCTGATACACG
Found at i:73484285 original size:40 final size:40
Alignment explanation
Indices: 73484222--73484442 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
73484212 ATTCGGATTG
73484222 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
73484261 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
73484301 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
73484341 ATAACCGGGCTAAGTCCCAAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73484381 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
73484421 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
73484443 TACTTGGTTT
Statistics
Matches: 166, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 29 0.17
40 137 0.83
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:73498387 original size:27 final size:27
Alignment explanation
Indices: 73498357--73498423 Score: 134
Period size: 27 Copynumber: 2.5 Consensus size: 27
73498347 TCTCCAACCA
73498357 TCCCTACACACCATATAGGTATTATAT
1 TCCCTACACACCATATAGGTATTATAT
73498384 TCCCTACACACCATATAGGTATTATAT
1 TCCCTACACACCATATAGGTATTATAT
73498411 TCCCTACACACCA
1 TCCCTACACACCA
73498424 CTTAGTGTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.33, C:0.31, G:0.06, T:0.30
Consensus pattern (27 bp):
TCCCTACACACCATATAGGTATTATAT
Found at i:73507044 original size:80 final size:79
Alignment explanation
Indices: 73506908--73507155 Score: 309
Period size: 80 Copynumber: 3.1 Consensus size: 79
73506898 CGGAATACAA
* *
73506908 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACGACTTGCACGAATG
1 CCGGATATAA-CACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAATG
73506973 CCTTCGGGTCTTAGC
65 CCTTCGGGTCTTAGC
*
73506988 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAATG
1 CCGGATATAAC-ACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAATG
73507053 CCTTCGGGTCTTAGC
65 CCTTCGGGTCTTAGC
* * * * * ** * **
73507068 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATTACTAGCATAAAT
1 CCGGATATA-ACACTTGCACGAA-TGCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
** *
73507132 ATCTTCGGGACTTAGC
64 GCCTTCGGGTCTTAGC
73507148 CCGGATAT
1 CCGGATAT
73507156 CATTCAATTA
Statistics
Matches: 148, Mismatches: 17, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
79 3 0.02
80 144 0.97
81 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAATGC
CTTCGGGTCTTAGC
Found at i:73507126 original size:40 final size:40
Alignment explanation
Indices: 73506908--73507113 Score: 308
Period size: 40 Copynumber: 5.2 Consensus size: 40
73506898 CGGAATACAA
* * *
73506908 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
*
73506948 CCGGATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
73506988 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
73507028 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
73507068 CCGGATGTAGTC-ACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATTTA-ACAACTTGCACGAA-TGCCTTCGGGTCTTAGC
73507108 CCGGAT
1 CCGGAT
73507114 ATAATTACTA
Statistics
Matches: 156, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 2 0.01
40 153 0.98
41 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:73507138 original size:40 final size:40
Alignment explanation
Indices: 73506908--73507155 Score: 216
Period size: 40 Copynumber: 6.2 Consensus size: 40
73506898 CGGAATACAA
* * *
73506908 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATACCTTCGGGTCTTAGC
* * * *
73506948 CCGGATTTAA-CGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACTAGCACAAATACCTTCGGGTCTTAGC
* * * *
73506988 CCGGATTTAA-CAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACTAGCACAAATACCTTCGGGTCTTAGC
* * * *
73507028 CCGGATTTAA-CAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACTAGCACAAATACCTTCGGGTCTTAGC
* * * * *
73507068 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATACCTTCGGGTCTTAGC
* * * *
73507108 CCGGATATAATTACTAGCATAAATATCTTCGGGACTTAGC
1 CCGGATATAATCACTAGCACAAATACCTTCGGGTCTTAGC
73507148 CCGGATAT
1 CCGGATAT
73507156 CATTCAATTA
Statistics
Matches: 188, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 2 0.01
40 185 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATACCTTCGGGTCTTAGC
Found at i:73507138 original size:120 final size:120
Alignment explanation
Indices: 73506908--73507155 Score: 320
Period size: 120 Copynumber: 2.1 Consensus size: 120
73506898 CGGAATACAA
* * *
73506908 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACGACTTGCACGAATG
1 CCGGATATAACAACGTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAACGACTAGCACGAATG
* * * * * *
73506973 CCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
66 CCTTCGGGTCTTAACCCGGATATAACAACTAGCACAAATACCTTCGGGACTTAGC
* * *
73507028 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCAC-AAT
1 CCGGATATAACAACGTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTA-ACGACTAGCACGAA-
** * *
73507091 TGCCTTCGGGTCTTAACCCGGATATAATTACTAGCATAAATATCTTCGGGACTTAGC
64 TGCCTTCGGGTCTTAACCCGGATATAACAACTAGCACAAATACCTTCGGGACTTAGC
73507148 CCGGATAT
1 CCGGATAT
73507156 CATTCAATTA
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
119 2 0.02
120 106 0.97
121 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (120 bp):
CCGGATATAACAACGTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAACGACTAGCACGAATG
CCTTCGGGTCTTAACCCGGATATAACAACTAGCACAAATACCTTCGGGACTTAGC
Found at i:73509116 original size:23 final size:23
Alignment explanation
Indices: 73509090--73509134 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
73509080 TGGGTATGTG
*
73509090 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
73509113 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
73509135 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:73509426 original size:28 final size:28
Alignment explanation
Indices: 73509386--73509443 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
73509376 CCATTAGGGT
73509386 ACTTAATCAAGGAACACACTCTCGAGCC
1 ACTTAATCAAGGAACACACTCTCGAGCC
*
73509414 ACTTAATCAAGGAACACACTCTTGAGCC
1 ACTTAATCAAGGAACACACTCTCGAGCC
73509442 AC
1 AC
73509444 ATATCGTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.36, C:0.31, G:0.14, T:0.19
Consensus pattern (28 bp):
ACTTAATCAAGGAACACACTCTCGAGCC
Found at i:73513680 original size:21 final size:21
Alignment explanation
Indices: 73513656--73513703 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
73513646 TACACGACTA
*
73513656 TGTGCCTTAG-CCACATGGTTG
1 TGTGCCTT-GCCCACATGGGTG
73513677 TGTGCCTTGTCCCACATGGGTG
1 TGTGCCTTG-CCCACATGGGTG
73513699 TGTGC
1 TGTGC
73513704 TCCCTATCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 1 0.04
21 8 0.33
22 15 0.62
ACGTcount: A:0.10, C:0.25, G:0.31, T:0.33
Consensus pattern (21 bp):
TGTGCCTTGCCCACATGGGTG
Found at i:73520988 original size:30 final size:30
Alignment explanation
Indices: 73520953--73521015 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
73520943 AGGGATGATG
73520953 AAAAGTGATGTTTGGAACTCCTTTCCCATA
1 AAAAGTGATGTTTGGAACTCCTTTCCCATA
*
73520983 AAAAGTGATGTTTGGAGCTCCTTTCCCATA
1 AAAAGTGATGTTTGGAACTCCTTTCCCATA
73521013 AAA
1 AAA
73521016 CAAACTCATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (30 bp):
AAAAGTGATGTTTGGAACTCCTTTCCCATA
Found at i:73530177 original size:21 final size:22
Alignment explanation
Indices: 73530153--73530193 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
73530143 TTTGTTTTCA
*
73530153 TCATATCTTT-TTTTTTCAATT
1 TCATATCTTTATTCTTTCAATT
*
73530174 TCATTTCTTTATTCTTTCAA
1 TCATATCTTTATTCTTTCAA
73530194 GCATAATCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.20, C:0.17, G:0.00, T:0.63
Consensus pattern (22 bp):
TCATATCTTTATTCTTTCAATT
Found at i:73531324 original size:22 final size:22
Alignment explanation
Indices: 73531296--73531338 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
73531286 CATGTTAATG
73531296 GGGAAATTAAATAATAAATTTA
1 GGGAAATTAAATAATAAATTTA
73531318 GGGAAATTAAATAATAAATTT
1 GGGAAATTAAATAATAAATTT
73531339 TATGTATTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.53, C:0.00, G:0.14, T:0.33
Consensus pattern (22 bp):
GGGAAATTAAATAATAAATTTA
Found at i:73536503 original size:39 final size:39
Alignment explanation
Indices: 73536460--73536536 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
73536450 ACAAATACTT
*
73536460 CATATAAACACTTCATATAACTG-TTCATATATCTATTTC
1 CATATAAACACTTCATATAACTGTTTCATA-ATCCATTTC
* *
73536499 CATATAAACATTTCGTATAACTGTTTCATAATCCATTT
1 CATATAAACACTTCATATAACTGTTTCATAATCCATTT
73536537 AACACATAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 28 0.82
40 6 0.18
ACGTcount: A:0.35, C:0.19, G:0.04, T:0.42
Consensus pattern (39 bp):
CATATAAACACTTCATATAACTGTTTCATAATCCATTTC
Found at i:73538441 original size:17 final size:18
Alignment explanation
Indices: 73538419--73538456 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
73538409 TTATTTTAAG
73538419 ATATTAT-TCATTATAAA
1 ATATTATCTCATTATAAA
*
73538436 ATATTATCTTATTATAAA
1 ATATTATCTCATTATAAA
73538454 ATA
1 ATA
73538457 AATTTGGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (18 bp):
ATATTATCTCATTATAAA
Found at i:73538451 original size:18 final size:17
Alignment explanation
Indices: 73538408--73538456 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
73538398 TATTATTAAG
* *
73538408 TTTATTTTAAGATATTA
1 TTTATTATAAAATATTA
*
73538425 TTCATTATAAAATATTA
1 TTTATTATAAAATATTA
73538442 TCTTATTATAAAATA
1 T-TTATTATAAAATA
73538457 AATTTGGATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
17 15 0.56
18 12 0.44
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (17 bp):
TTTATTATAAAATATTA
Found at i:73538966 original size:19 final size:20
Alignment explanation
Indices: 73538923--73538967 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
73538913 CGAATAAAAA
*
73538923 TATTAAAAAATATATAAATT
1 TATTATAAAATATATAAATT
*
73538943 T-TTATAAAGTATA-AAATT
1 TATTATAAAATATATAAATT
73538961 TATTATA
1 TATTATA
73538968 CATCGAAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 6 0.27
19 15 0.68
20 1 0.05
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
TATTATAAAATATATAAATT
Found at i:73539596 original size:2 final size:2
Alignment explanation
Indices: 73539589--73539631 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
73539579 TGACATAATA
73539589 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73539631 A
1 A
73539632 CTAACAAGTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:73545967 original size:23 final size:24
Alignment explanation
Indices: 73545940--73545994 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
73545930 TAGCCAAGTA
*
73545940 AGCTTCCCGATA-GGCTCTTTGTG
1 AGCTTCCCGATATGGCTATTTGTG
* *
73545963 GGCTTCTCGATATGGCTATTTGTG
1 AGCTTCCCGATATGGCTATTTGTG
73545987 AGCTTCCC
1 AGCTTCCC
73545995 ATTATAAGGC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 10 0.38
24 16 0.62
ACGTcount: A:0.13, C:0.25, G:0.25, T:0.36
Consensus pattern (24 bp):
AGCTTCCCGATATGGCTATTTGTG
Found at i:73551188 original size:25 final size:24
Alignment explanation
Indices: 73551173--73551228 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 24
73551163 GTTAGGATAC
*
73551173 ATATGTCATGACATAGGATTCCGAT
1 ATATGTCATGACATA-GATTACGAT
*
73551198 ATATGTCATGACATAGGATTCCGAT
1 ATATGTCATGACATA-GATTACGAT
73551223 ATATGT
1 ATATGT
73551229 GTGCGAGTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (24 bp):
ATATGTCATGACATAGATTACGAT
Found at i:73555238 original size:30 final size:30
Alignment explanation
Indices: 73555202--73555267 Score: 132
Period size: 30 Copynumber: 2.2 Consensus size: 30
73555192 CTTCGATGTT
73555202 AGCTTAGAAATATGTGAGAAAAGGCTACGA
1 AGCTTAGAAATATGTGAGAAAAGGCTACGA
73555232 AGCTTAGAAATATGTGAGAAAAGGCTACGA
1 AGCTTAGAAATATGTGAGAAAAGGCTACGA
73555262 AGCTTA
1 AGCTTA
73555268 CTTTGCATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.42, C:0.11, G:0.26, T:0.21
Consensus pattern (30 bp):
AGCTTAGAAATATGTGAGAAAAGGCTACGA
Found at i:73578798 original size:2 final size:2
Alignment explanation
Indices: 73578791--73578817 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
73578781 ACATGATAAC
73578791 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
73578818 AATAACATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73581615 original size:40 final size:40
Alignment explanation
Indices: 73581519--73581731 Score: 237
Period size: 40 Copynumber: 5.3 Consensus size: 40
73581509 TGAAAAATGA
* * * * *
73581519 ATATATGAAATGCTTATACGAACCAATTATATGGAAATAG
1 ATATATGGAATGGTTATATGAATCAGTTATATGGAAATAG
* * * **
73581559 ATAAATGAAATTGTTATATGAATTGGTTATATGGAAATAG
1 ATATATGGAATGGTTATATGAATCAGTTATATGGAAATAG
* ***
73581599 ATATATGGTATGGTTATATGAATCAGTTATACAAAAATAG
1 ATATATGGAATGGTTATATGAATCAGTTATATGGAAATAG
* *
73581639 ATAAATGAAATGGTTATATGAATCAGTTATATGGAAATAG
1 ATATATGGAATGGTTATATGAATCAGTTATATGGAAATAG
* * * * *
73581679 ACATATGGTATGGTTATATGAATCAGTTATATGAAAAAAA
1 ATATATGGAATGGTTATATGAATCAGTTATATGGAAATAG
73581719 ATATATGGAATGG
1 ATATATGGAATGG
73581732 AACATTGGAT
Statistics
Matches: 141, Mismatches: 32, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.44, C:0.04, G:0.19, T:0.33
Consensus pattern (40 bp):
ATATATGGAATGGTTATATGAATCAGTTATATGGAAATAG
Found at i:73581637 original size:80 final size:80
Alignment explanation
Indices: 73581553--73581709 Score: 278
Period size: 80 Copynumber: 2.0 Consensus size: 80
73581543 AATTATATGG
* ** *
73581553 AAATAGATAAATGAAATTGTTATATGAATTGGTTATATGGAAATAGATATATGGTATGGTTATAT
1 AAATAGATAAATGAAATGGTTATATGAATCAGTTATATGGAAATAGACATATGGTATGGTTATAT
73581618 GAATCAGTTATACAA
66 GAATCAGTTATACAA
73581633 AAATAGATAAATGAAATGGTTATATGAATCAGTTATATGGAAATAGACATATGGTATGGTTATAT
1 AAATAGATAAATGAAATGGTTATATGAATCAGTTATATGGAAATAGACATATGGTATGGTTATAT
73581698 GAATCAGTTATA
66 GAATCAGTTATA
73581710 TGAAAAAAAA
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 73 1.00
ACGTcount: A:0.43, C:0.03, G:0.19, T:0.35
Consensus pattern (80 bp):
AAATAGATAAATGAAATGGTTATATGAATCAGTTATATGGAAATAGACATATGGTATGGTTATAT
GAATCAGTTATACAA
Found at i:73581659 original size:13 final size:13
Alignment explanation
Indices: 73581545--73581714 Score: 85
Period size: 13 Copynumber: 12.8 Consensus size: 13
73581535 TACGAACCAA
73581545 TTATATGGAAATAG
1 TTATAT-GAAATAG
* * *
73581559 ATAAATGAAATTG
1 TTATATGAAATAG
* *
73581572 TTATATGAATTGG
1 TTATATGAAATAG
73581585 TTATATGGAAATAG
1 TTATAT-GAAATAG
* ** *
73581599 ATATATGGTATGG
1 TTATATGAAATAG
73581612 TTATATG-AATCAG
1 TTATATGAAAT-AG
**
73581625 TTATACAAAAATAG
1 TTATA-TGAAATAG
* * *
73581639 ATAAATGAAATGG
1 TTATATGAAATAG
73581652 TTATATG-AATCAG
1 TTATATGAAAT-AG
73581665 TTATATGGAAATAG
1 TTATAT-GAAATAG
** ** *
73581679 ACATATGGTATGG
1 TTATATGAAATAG
73581692 TTATATG-AATCAG
1 TTATATGAAAT-AG
73581705 TTATATGAAA
1 TTATATGAAA
73581715 AAAAATATAT
Statistics
Matches: 112, Mismatches: 35, Indels: 18
0.68 0.21 0.11
Matches are distributed among these distances:
12 7 0.06
13 71 0.63
14 28 0.25
15 6 0.05
ACGTcount: A:0.42, C:0.03, G:0.19, T:0.35
Consensus pattern (13 bp):
TTATATGAAATAG
Found at i:73581731 original size:80 final size:80
Alignment explanation
Indices: 73581553--73581731 Score: 261
Period size: 80 Copynumber: 2.2 Consensus size: 80
73581543 AATTATATGG
* * ** *
73581553 AAATAGATAAATGAAATTGTTATATGAATTGGTTATATGGAAATAGATATATGGTATGGTTATAT
1 AAATAAATAAATGAAATGGTTATATGAATCAGTTATATGGAAATAGACATATGGTATGGTTATAT
73581618 GAATCAGTTATACAA
66 GAATCAGTTATACAA
*
73581633 AAATAGATAAATGAAATGGTTATATGAATCAGTTATATGGAAATAGACATATGGTATGGTTATAT
1 AAATAAATAAATGAAATGGTTATATGAATCAGTTATATGGAAATAGACATATGGTATGGTTATAT
*
73581698 GAATCAGTTATATGAA
66 GAATCAGTTATA-CAA
* *
73581714 AAA-AAATATATGGAATGG
1 AAATAAATAAATGAAATGG
73581732 AACATTGGAT
Statistics
Matches: 90, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
80 85 0.94
81 5 0.06
ACGTcount: A:0.44, C:0.03, G:0.20, T:0.34
Consensus pattern (80 bp):
AAATAAATAAATGAAATGGTTATATGAATCAGTTATATGGAAATAGACATATGGTATGGTTATAT
GAATCAGTTATACAA
Found at i:73582691 original size:44 final size:44
Alignment explanation
Indices: 73582641--73582729 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
73582631 GAGAGTTACA
73582641 TAGATTGGTCATACAACCATGTTCTTAGGCCACATGGGCTGAGC
1 TAGATTGGTCATACAACCATGTTCTTAGGCCACATGGGCTGAGC
73582685 TAGATTGGTCATACAACCATGTTCTTAGGCCACATGGGCTGAGC
1 TAGATTGGTCATACAACCATGTTCTTAGGCCACATGGGCTGAGC
73582729 T
1 T
73582730 CTGTCACATG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (44 bp):
TAGATTGGTCATACAACCATGTTCTTAGGCCACATGGGCTGAGC
Found at i:73597991 original size:39 final size:40
Alignment explanation
Indices: 73597946--73598068 Score: 128
Period size: 40 Copynumber: 3.1 Consensus size: 40
73597936 CTACTTTCAA
*
73597946 TAGAATCATTAGGTATGGCTTGATAAAGCATAC-TTTTAG
1 TAGAATCAGTAGGTATGGCTTGATAAAGCATACATTTTAG
* * *
73597985 TAGAATCAGTAGGTAAGGCTCGATAGCA-CATACATTTTAG
1 TAGAATCAGTAGGTATGGCTTGATA-AAGCATACATTTTAG
* * *
73598025 TGGGATCGGTAGGTATGGCTTG--AAAGCACATACATTTTAG
1 TAGAATCAGTAGGTATGGCTTGATAAAG--CATACATTTTAG
73598065 TAGA
1 TAGA
73598069 TTCAATAGAT
Statistics
Matches: 67, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 27 0.40
40 38 0.57
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (40 bp):
TAGAATCAGTAGGTATGGCTTGATAAAGCATACATTTTAG
Found at i:73598037 original size:40 final size:40
Alignment explanation
Indices: 73597974--73598068 Score: 129
Period size: 40 Copynumber: 2.4 Consensus size: 40
73597964 CTTGATAAAG
*
73597974 CATAC-TTTTAGTAGAATCAGTAGGTAAGGCTCGATAGCA
1 CATACATTTTAGTAGAATCAGTAGGTAAGGCTCGAAAGCA
* * * * *
73598013 CATACATTTTAGTGGGATCGGTAGGTATGGCTTGAAAGCA
1 CATACATTTTAGTAGAATCAGTAGGTAAGGCTCGAAAGCA
73598053 CATACATTTTAGTAGA
1 CATACATTTTAGTAGA
73598069 TTCAATAGAT
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
39 5 0.11
40 42 0.89
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.31
Consensus pattern (40 bp):
CATACATTTTAGTAGAATCAGTAGGTAAGGCTCGAAAGCA
Found at i:73603429 original size:20 final size:20
Alignment explanation
Indices: 73603401--73603445 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
73603391 TTACCTTAAT
*
73603401 TTACAAGTAAATTATCAAAA
1 TTACCAGTAAATTATCAAAA
73603421 TTACCAGTAAATTATCAAAA
1 TTACCAGTAAATTATCAAAA
73603441 TTACC
1 TTACC
73603446 TAACCAAGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.49, C:0.16, G:0.04, T:0.31
Consensus pattern (20 bp):
TTACCAGTAAATTATCAAAA
Found at i:73615268 original size:24 final size:23
Alignment explanation
Indices: 73615240--73615284 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
73615230 GAGTTACCTG
73615240 TTAAGCTCGCATGAGCATTCTTAT
1 TTAAGCTCGCATGAGC-TTCTTAT
**
73615264 TTAAGCTCTTATGAGCTTCTT
1 TTAAGCTCGCATGAGCTTCTT
73615285 GTTATTAAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.22, C:0.20, G:0.16, T:0.42
Consensus pattern (23 bp):
TTAAGCTCGCATGAGCTTCTTAT
Found at i:73624516 original size:40 final size:41
Alignment explanation
Indices: 73624427--73624576 Score: 203
Period size: 41 Copynumber: 3.7 Consensus size: 41
73624417 CGCTGACTCA
* *
73624427 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
73624468 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
*
73624508 AAAAGCCCTTCGAGACCAAGCTCGGATTATGAAACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
*
73624549 AAAAGCCCTTCAAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
73624577 TAATCCCCTA
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
40 32 0.35
41 60 0.65
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:73632650 original size:41 final size:41
Alignment explanation
Indices: 73632500--73632649 Score: 221
Period size: 41 Copynumber: 3.7 Consensus size: 41
73632490 CGCTGACTCA
* *
73632500 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * *
73632541 GAAAGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
*
73632581 AAAAGCCCTTCGAGACCAAGCTCGGATTTTGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
73632622 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
73632650 TAATCCCCGA
Statistics
Matches: 95, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
40 33 0.35
41 62 0.65
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:73640465 original size:6 final size:6
Alignment explanation
Indices: 73640450--73640492 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
73640440 ATTGAGTCTA
* * *
73640450 TTTATT TTTATG TTTATG TTTATT TTTATT TTTATT TTAATT T
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT T
73640493 CCTCTTTTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:73643655 original size:46 final size:45
Alignment explanation
Indices: 73643522--73643688 Score: 183
Period size: 46 Copynumber: 3.6 Consensus size: 45
73643512 TGATATGTGT
* *
73643522 GCTAGTGTAAGACATGTCTGGGATATGCATCGGCCAT-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-TGA-GATGAGA
* * *
73643568 GCCAATGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC-CTGAGATGAGA
* * * *
73643614 TCTAGTGTAAGACATGTCTGGGACATGCACCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-GAGAT-GA-GA
*
73643662 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
73643689 GCGTCAGCTT
Statistics
Matches: 102, Mismatches: 14, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
45 1 0.01
46 73 0.72
47 2 0.02
48 26 0.25
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTGAGATGAGA
Found at i:73648343 original size:29 final size:29
Alignment explanation
Indices: 73648310--73648383 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
73648300 GTGACGAGAT
73648310 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
73648339 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
73648368 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
73648384 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:73648399 original size:29 final size:29
Alignment explanation
Indices: 73648367--73648442 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
73648357 CTGGAAATAT
* *
73648367 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
73648396 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
73648425 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
73648443 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:73648410 original size:58 final size:58
Alignment explanation
Indices: 73648310--73648442 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
73648300 GTGACGAGAT
* * * * * *
73648310 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
73648368 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
73648426 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
73648443 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:73656223 original size:29 final size:29
Alignment explanation
Indices: 73656190--73656263 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
73656180 GTGACGAGAT
73656190 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
73656219 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
73656248 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
73656264 AAATCGAGTA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Done.