Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 238 of 410
Found at i:73661890 original size:36 final size:36
Alignment explanation
Indices: 73661849--73661917 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
73661839 TCATGGCGTT
73661849 TGATTGATAAGGAATGAATATGAGTAAGTATATTTA
1 TGATTGATAAGGAATGAATATGAGTAAGTATATTTA
73661885 TGATTGATAAGGAATGAATATGAGTAAGTATAT
1 TGATTGATAAGGAATGAATATGAGTAAGTATAT
73661918 GAGCATGTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (36 bp):
TGATTGATAAGGAATGAATATGAGTAAGTATATTTA
Found at i:73663536 original size:80 final size:80
Alignment explanation
Indices: 73663452--73663600 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
73663442 TATGGTAACC
* * * *
73663452 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
73663516 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
73663532 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
73663597 CCGG
66 CCGG
73663601 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:73663542 original size:40 final size:38
Alignment explanation
Indices: 73663493--73663600 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
73663483 ATCACGATTT
*
73663493 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
73663533 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
73663573 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
73663601 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:73667612 original size:43 final size:43
Alignment explanation
Indices: 73667559--73667697 Score: 158
Period size: 43 Copynumber: 3.3 Consensus size: 43
73667549 TGTAAGACCG
*
73667559 TGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACAA
1 TGTCTGGGACACAGGCCTCGATTGAGATTTATGTATAAGACAA
** * * **
73667602 TGTCTGGGACATTGGCATCGTATCT--GATTT-TGTGTAAGACTC
1 TGTCTGGGACACAGGCCTCG-AT-TGAGATTTATGTATAAGACAA
*
73667644 TGTCTGGGACACAGGCCTCGATTGAGATTTATGTATAAGACCA
1 TGTCTGGGACACAGGCCTCGATTGAGATTTATGTATAAGACAA
*
73667687 TGTCTAGGACA
1 TGTCTGGGACA
73667698 TCGGCATCAT
Statistics
Matches: 77, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
40 1 0.01
41 2 0.03
42 30 0.39
43 41 0.53
44 2 0.03
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
TGTCTGGGACACAGGCCTCGATTGAGATTTATGTATAAGACAA
Found at i:73667653 original size:42 final size:41
Alignment explanation
Indices: 73667548--73667789 Score: 143
Period size: 43 Copynumber: 5.7 Consensus size: 41
73667538 CTGTGACATC
* * *
73667548 GTGTAAGACCGTGTCTGGGACACAGGCCTCG-AT-TGAGATTTAC
1 GTGTAAGACC-TGTCTGGGACATAGGCATCGTATCT--GATTT-T
* * *
73667591 GTATAAGACAATGTCTGGGACATTGGCATCGTATCTGATTTT
1 GTGTAAGAC-CTGTCTGGGACATAGGCATCGTATCTGATTTT
* *
73667633 GTGTAAGACTCTGTCTGGGACACAGGCCTCG-AT-TGAGATTTAT
1 GTGTAAGAC-CTGTCTGGGACATAGGCATCGTATCT--GATTT-T
* * * * * *
73667676 GTATAAGACCATGTCTAGGACATCGGCATCATATCTAATTTC
1 GTGTAAGACC-TGTCTGGGACATAGGCATCGTATCTGATTTT
* **
73667718 GTGTAAGACCCTGTCTGGGACAGAGGCATCGATAT-TGAATTAC
1 GTGTAAGA-CCTGTCTGGGACATAGGCATCG-TATCTG-ATTTT
* * *
73667761 ATGTAAGACCACGTCTGGGACATCGGCAT
1 GTGTAAGACC-TGTCTGGGACATAGGCAT
73667790 TGTACTTGTT
Statistics
Matches: 155, Mismatches: 31, Indels: 26
0.73 0.15 0.12
Matches are distributed among these distances:
40 1 0.01
41 2 0.01
42 57 0.37
43 89 0.57
44 4 0.03
45 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (41 bp):
GTGTAAGACCTGTCTGGGACATAGGCATCGTATCTGATTTT
Found at i:73667691 original size:85 final size:84
Alignment explanation
Indices: 73667546--73667789 Score: 314
Period size: 85 Copynumber: 2.9 Consensus size: 84
73667536 GTCTGTGACA
* *
73667546 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACAATGTCTGGGA
1 TCGTGTAAGACC-TGTCTGGGACACAGGCCTCGATTGAGATTTATGTATAAGACCATGTCTGGGA
* * *
73667611 CATTGGCATCGTATCTGATT
65 CATCGGCATCATATCTAATT
* *
73667631 TTGTGTAAGACTCTGTCTGGGACACAGGCCTCGATTGAGATTTATGTATAAGACCATGTCTAGGA
1 TCGTGTAAGAC-CTGTCTGGGACACAGGCCTCGATTGAGATTTATGTATAAGACCATGTCTGGGA
73667696 CATCGGCATCATATCTAATT
65 CATCGGCATCATATCTAATT
* * * *
73667716 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-ATTACATG--TAAGACCACGTCTG
1 TCGTGTAAGA-CCTGTCTGGGACACAGGCCTCG--ATTGAGATT-TATGTATAAGACCATGTCTG
73667778 GGACATCGGCAT
62 GGACATCGGCAT
73667790 TGTACTTGTT
Statistics
Matches: 141, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
85 128 0.91
86 5 0.04
87 8 0.06
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (84 bp):
TCGTGTAAGACCTGTCTGGGACACAGGCCTCGATTGAGATTTATGTATAAGACCATGTCTGGGAC
ATCGGCATCATATCTAATT
Found at i:73669603 original size:43 final size:43
Alignment explanation
Indices: 73669515--73669679 Score: 176
Period size: 43 Copynumber: 3.9 Consensus size: 43
73669505 AATGTGATAT
* * * * *
73669515 TCGGGCCTCGG-CCTAGCAAGCTTTAA-GCAGGTGAATAATATTA
1 TCGGGCTTCGGACCTAGCAGGCTATAATGCTGGTG-A-AATAATA
*
73669558 TCGGGCTTCGGACCTAGCAGGCTATAATGCTGGTGAGATAATA
1 TCGGGCTTCGGACCTAGCAGGCTATAATGCTGGTGAAATAATA
* *
73669601 TCGGGCTTCGGGCCTAGCAGGCTATAATGCTGGTGAAATGATA
1 TCGGGCTTCGGACCTAGCAGGCTATAATGCTGGTGAAATAATA
* * *
73669644 TCGGGCTTC-AAGCCTAGCAGGCGA-AATGCCGGTGAA
1 TCGGGCTTCGGA-CCTAGCAGGCTATAATGCTGGTGAA
73669680 TGATTTTAGA
Statistics
Matches: 106, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
42 11 0.10
43 75 0.71
44 14 0.13
45 6 0.06
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (43 bp):
TCGGGCTTCGGACCTAGCAGGCTATAATGCTGGTGAAATAATA
Found at i:73671842 original size:27 final size:27
Alignment explanation
Indices: 73671826--73672076 Score: 294
Period size: 27 Copynumber: 9.3 Consensus size: 27
73671816 CGACTTGTAA
73671826 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
73671853 AATTACCATTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
**
73671880 AATTACTGTTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
*
73671907 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* *
73671934 AATTACTATTTTATCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
** *
73671961 AATTACTGTTTTCCCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
* * *
73671988 AAGTACTATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAG
*
73672015 AATTACCGTTTTACCCTC-AGTTTACAG
1 AATTACCATTTTACCCTCGA-TTTACAG
** * *
73672042 AATTACTGTTTTACCTTCAATTTACAG
1 AATTACCATTTTACCCTCGATTTACAG
73672069 AATTACCA
1 AATTACCA
73672077 AAATACCCTT
Statistics
Matches: 195, Mismatches: 21, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
26 4 0.02
27 187 0.96
28 4 0.02
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAG
Found at i:73672092 original size:27 final size:27
Alignment explanation
Indices: 73672069--73672220 Score: 214
Period size: 27 Copynumber: 5.6 Consensus size: 27
73672059 CAATTTACAG
73672069 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
73672096 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
73672123 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
73672150 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
73672177 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
73672204 AATTACCGAAATACCCT
1 AATTACCAAAATACCCT
73672221 GTAGGGTAGA
Statistics
Matches: 107, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 107 1.00
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:73672092 original size:54 final size:54
Alignment explanation
Indices: 73671826--73672075 Score: 401
Period size: 54 Copynumber: 4.6 Consensus size: 54
73671816 CGACTTGTAA
* *
73671826 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
*
73671880 AATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* * *
73671934 AATTACTATTTTATCCTCGATTTACAGAATTACTGTTTTCCCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* *
73671988 AAGTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAG
1 AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* * *
73672042 AATTACTGTTTTACCTTCAATTTACAGAATTACC
1 AATTACTATTTTACCCTCGATTTACAGAATTACC
73672076 AAAATACCCT
Statistics
Matches: 179, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 179 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (54 bp):
AATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
Found at i:73672094 original size:81 final size:81
Alignment explanation
Indices: 73671826--73672076 Score: 371
Period size: 81 Copynumber: 3.1 Consensus size: 81
73671816 CGACTTGTAA
73671826 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
*
73671891 TACCCTCGATTTACAG
66 TACCCTCAATTTACAG
* * *
73671907 AATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTATCCTC-GATTTACAGAATTACTGT
1 AATTACCATTTTACCCTCGA-TTTACAGAATTACCATTTTACCCTCAG-TTTACAGAATTACTGT
* *
73671970 TTTCCCCTCAGTTTACAG
64 TTTACCCTCAATTTACAG
* * * *
73671988 AAGTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTT
1 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
*
73672053 TACCTTCAATTTACAG
66 TACCCTCAATTTACAG
73672069 AATTACCA
1 AATTACCA
73672077 AAATACCCTT
Statistics
Matches: 148, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
80 2 0.01
81 144 0.97
82 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.39
Consensus pattern (81 bp):
AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACTGTTT
TACCCTCAATTTACAG
Found at i:73672127 original size:54 final size:54
Alignment explanation
Indices: 73672069--73672219 Score: 257
Period size: 54 Copynumber: 2.8 Consensus size: 54
73672059 CAATTTACAG
* *
73672069 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAA
*
73672123 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAA
* *
73672177 AATTACTAAAATACCCTTTGTTTATAAAATTACCGAAATACCC
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCC
73672220 TGTAGGGTAG
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 91 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAA
Found at i:73672887 original size:28 final size:28
Alignment explanation
Indices: 73672855--73672923 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
73672845 ACGTAGAACA
*
73672855 CGAAATTACCCTTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
73672883 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
73672911 CGATA-TACCCCTA
1 CGAAATTACCCCTA
73672924 GGGTTTTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:73681865 original size:34 final size:34
Alignment explanation
Indices: 73681822--73681888 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
73681812 TGAGGTAAGT
*
73681822 GCGTAATATTACTCTCATGTTTATAGTGATTTTA
1 GCGTAATATTACTCTCATGTTTATAATGATTTTA
*
73681856 GCGTAATATTACTCTGATGTTTATAATGATTTT
1 GCGTAATATTACTCTCATGTTTATAATGATTTT
73681889 TACTTATTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.27, C:0.10, G:0.15, T:0.48
Consensus pattern (34 bp):
GCGTAATATTACTCTCATGTTTATAATGATTTTA
Found at i:73682112 original size:26 final size:26
Alignment explanation
Indices: 73681999--73682113 Score: 90
Period size: 26 Copynumber: 4.4 Consensus size: 26
73681989 CTTGAATAAT
*
73681999 AGGCCTTGAGCCTG-TGATTATTTACC
1 AGGCCTTGAGCC-GATGATTATTTAGC
* * *
73682025 AGGCCTTAAGCCAATGATTATTTAAC
1 AGGCCTTGAGCCGATGATTATTTAGC
* * ** *
73682051 ATGCTTTGATTCGATGATTACTTAGC
1 AGGCCTTGAGCCGATGATTATTTAGC
* * *
73682077 AGG-TTATGAGCCGGTGATTATTTAGT
1 AGGCCT-TGAGCCGATGATTATTTAGC
73682103 AGGCCTTGAGC
1 AGGCCTTGAGC
73682114 TAGTGGTTAT
Statistics
Matches: 68, Mismatches: 18, Indels: 6
0.74 0.20 0.07
Matches are distributed among these distances:
25 2 0.03
26 65 0.96
27 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35
Consensus pattern (26 bp):
AGGCCTTGAGCCGATGATTATTTAGC
Found at i:73684644 original size:47 final size:47
Alignment explanation
Indices: 73684589--73685213 Score: 1036
Period size: 47 Copynumber: 13.3 Consensus size: 47
73684579 GTATGAGATA
*
73684589 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
73684636 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
73684683 TATATAAGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
73684730 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
73684777 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
73684824 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* **
73684871 TATATAAGTGACGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
73684918 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
73684965 TATATATGTGATAAGGCCGAATGGCCAATGTGAT-AATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
73685011 CATATATGAGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
73685058 TATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
73685105 CATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
73685152 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
73685199 TATAAATGTGATAAG
1 TATATATGTGATAAG
73685214 TCCCGAAGGG
Statistics
Matches: 546, Mismatches: 31, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
46 41 0.08
47 505 0.92
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:73685390 original size:37 final size:37
Alignment explanation
Indices: 73685331--73685413 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
73685321 CCGAGCTCTA
* * *
73685331 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCAGGT
*
73685368 AAGACCCGATGACCACGGGTGGAGATTTTGTCCAGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCAGGT
*
73685405 AAGCCCCGA
1 AAGACCCGA
73685414 ACTAAAGGTT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.20
Consensus pattern (37 bp):
AAGACCCGATGACCACGGGTGGAGATTATGTCCAGGT
Found at i:73696112 original size:39 final size:39
Alignment explanation
Indices: 73695933--73696109 Score: 201
Period size: 39 Copynumber: 4.5 Consensus size: 39
73695923 AACATGTTTT
* * * * *
73695933 TGAGTATTGCGACATATGTTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTAATCATA
*
73695972 TGAGTATTGCGATATATGCTTGAATGTTATGTAATCATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTAATCATA
* * ** *
73696011 TGAGTATTGTCATATGTGCTTGAGCGTTATGTAATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTAATCATA
* * *
73696050 TGAGTATTGTGATATATGCTTAAATGTTATGTGATCATC
1 TGAGTATTGTGATATATGCTTGAATGTTATGTAATCATA
* * *
73696089 TGTGTAATATGATATATGCTT
1 TGAGTATTGTGATATATGCTT
73696110 AAAAGTAAAT
Statistics
Matches: 117, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 117 1.00
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.44
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTGAATGTTATGTAATCATA
Found at i:73698383 original size:37 final size:36
Alignment explanation
Indices: 73698303--73698383 Score: 85
Period size: 37 Copynumber: 2.2 Consensus size: 36
73698293 TTATTCACTC
*
73698303 TTCACTCCTTTAGCTTTTAACCATTCTATGCTTTTA
1 TTCACTCCTTTAGCTTTTAACCATTCAATGCTTTTA
* *
73698339 TCACACTCGCTTT-GCTTTTAACC-TTCACAATGCTTTTG
1 T-TCACTC-CTTTAGCTTTTAACCATT--CAATGCTTTTA
73698377 TTCACTC
1 TTCACTC
73698384 ATTAATTTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
36 3 0.08
37 20 0.54
38 14 0.38
ACGTcount: A:0.19, C:0.28, G:0.07, T:0.46
Consensus pattern (36 bp):
TTCACTCCTTTAGCTTTTAACCATTCAATGCTTTTA
Found at i:73700362 original size:46 final size:45
Alignment explanation
Indices: 73700306--73700474 Score: 153
Period size: 46 Copynumber: 3.6 Consensus size: 45
73700296 TTTGTATGCT
* *
73700306 AGTGTAAGACATGTTTGGGACATGCATCAGTCACAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCACAGTATGAGAGCC
* * * *
73700352 AGTGTAAGACATGACTGGGACATGCATTGGCCCCAAGATATTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCA-TCGCCAC-AG-TA-TGAGAGCC
* * * ** *
73700400 AGTTTAAGACATGTCTGGGACATGCATCGGCATTGAG-GCGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGCCA--CAGTATGAGAGCC
73700446 AGTGTAAGACATGTCTGGGACATGCATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
73700475 GCCTCGCGAG
Statistics
Matches: 99, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
45 1 0.01
46 58 0.59
47 6 0.06
48 32 0.32
49 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCACAGTATGAGAGCC
Found at i:73700513 original size:94 final size:94
Alignment explanation
Indices: 73700345--73700522 Score: 225
Period size: 94 Copynumber: 1.9 Consensus size: 94
73700335 GTCACAGTAT
* * *
73700345 GAGAGCCAGTGTAAGACATGACTGGGACATGCATTGGCCCCAAGATATTTAAGCCAGTTTAAGAC
1 GAGAGCCAGTGTAAGACATGACTGGGACATGCATCGGCCCCAAGATA-TCAAGCCAGTGTAAGAC
73700410 ATGTCTGGGACAT-GCATCGGCATTGAGGC
65 ATGTCTGGGACATGGCATCGGCATTGAGGC
* * * * *
73700439 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCGAGATA-CAAGCTAGTGTGAGA
1 GAGAGCCAGTGTAAGACATGACTGGGACATGCATCGGCC-C-CAAGATATCAAGCCAGTGTAAGA
* *
73700503 CCTGTTTGGGACATGGCATC
64 CATGTCTGGGACATGGCATC
73700523 AGCTTGTTGT
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
94 59 0.83
95 6 0.08
96 6 0.08
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (94 bp):
GAGAGCCAGTGTAAGACATGACTGGGACATGCATCGGCCCCAAGATATCAAGCCAGTGTAAGACA
TGTCTGGGACATGGCATCGGCATTGAGGC
Found at i:73701373 original size:16 final size:16
Alignment explanation
Indices: 73701352--73701383 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
73701342 TATATTGTCT
73701352 ACACGGGTAGACACAC
1 ACACGGGTAGACACAC
73701368 ACACGGGTAGACACAC
1 ACACGGGTAGACACAC
73701384 GGGCGTGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.31, G:0.25, T:0.06
Consensus pattern (16 bp):
ACACGGGTAGACACAC
Found at i:73705493 original size:40 final size:40
Alignment explanation
Indices: 73705301--73705486 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
73705291 TCGAATGATG
* * *
73705301 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
73705341 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
73705381 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
73705421 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
73705462 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73705487 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73705493 original size:80 final size:80
Alignment explanation
Indices: 73705301--73705519 Score: 238
Period size: 80 Copynumber: 2.8 Consensus size: 80
73705291 TCGAATGATG
* * **
73705301 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
73705365 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
* *
73705381 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
73705443 TCTGTGCGAGTTACTATAA
64 TC-GTGCGAGTTACTA-AA
* **
73705462 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
73705520 TACGTGATTC
Statistics
Matches: 119, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
79 19 0.16
80 90 0.76
81 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:73713477 original size:40 final size:40
Alignment explanation
Indices: 73713285--73713470 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
73713275 TCGAATGATG
* * *
73713285 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
73713325 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
73713365 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
73713405 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
73713446 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73713471 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73713477 original size:80 final size:80
Alignment explanation
Indices: 73713285--73713503 Score: 238
Period size: 80 Copynumber: 2.8 Consensus size: 80
73713275 TCGAATGATG
* * **
73713285 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
73713349 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
* *
73713365 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
73713427 TCTGTGCGAGTTACTATAA
64 TC-GTGCGAGTTACTA-AA
* **
73713446 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
73713504 TACGTGATTC
Statistics
Matches: 119, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
79 19 0.16
80 90 0.76
81 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:73714094 original size:93 final size:93
Alignment explanation
Indices: 73713982--73714153 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
73713972 CGCCCATAAG
* *
73713982 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73714047 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
73714075 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73714140 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
73714154 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73714150 original size:46 final size:46
Alignment explanation
Indices: 73713975--73714150 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
73713965 TNTAACCCGC
* * *
73713975 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
73714021 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
73714071 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
73714114 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
73714151 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73721663 original size:93 final size:93
Alignment explanation
Indices: 73721551--73721722 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
73721541 CGCCCATAAG
* *
73721551 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73721616 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
73721644 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73721709 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
73721723 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73721719 original size:46 final size:46
Alignment explanation
Indices: 73721544--73721719 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
73721534 TGTAACCCGC
* * *
73721544 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
73721590 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
73721640 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
73721683 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
73721720 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73730701 original size:17 final size:17
Alignment explanation
Indices: 73730681--73730714 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
73730671 AGCAGGAAAA
73730681 GAAAGAAAGAA-AAAAGG
1 GAAAGAAA-AAGAAAAGG
73730698 GAAAGAAAAAGAAAAGG
1 GAAAGAAAAAGAAAAGG
73730715 AAAATTTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (17 bp):
GAAAGAAAAAGAAAAGG
Found at i:73732501 original size:20 final size:20
Alignment explanation
Indices: 73732473--73732524 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
73732463 CCCACGGCCT
* *
73732473 GGCCCCACGGGCATGTTCCA
1 GGCCACACGGGCATGTCCCA
73732493 GGCCACACGGGCATGTCCCA
1 GGCCACACGGGCATGTCCCA
73732513 GGCCACACGGGC
1 GGCCACACGGGC
73732525 GTGTGCCCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.17, C:0.40, G:0.33, T:0.10
Consensus pattern (20 bp):
GGCCACACGGGCATGTCCCA
Found at i:73733188 original size:25 final size:25
Alignment explanation
Indices: 73733103--73733188 Score: 77
Period size: 25 Copynumber: 3.4 Consensus size: 25
73733093 CCACAACTCT
* *
73733103 TATGAGCTTATCAATTC-TCAGCTCG
1 TATGAGCATACCAATTCAT-AGCTCG
* *
73733128 TATGAGCTTTCCAATTCATAGCTCG
1 TATGAGCATACCAATTCATAGCTCG
* **
73733153 TGA-GAGAATACTGATTCATAGCTCG
1 T-ATGAGCATACCAATTCATAGCTCG
73733178 TATGAGCATAC
1 TATGAGCATAC
73733189 ATGTACATGA
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
24 1 0.02
25 47 0.94
26 2 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (25 bp):
TATGAGCATACCAATTCATAGCTCG
Found at i:73738648 original size:7 final size:7
Alignment explanation
Indices: 73738636--73738671 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
73738626 CTTATCTCTT
73738636 TCCCCTC
1 TCCCCTC
73738643 TCCCCTC
1 TCCCCTC
73738650 TCCCCTC
1 TCCCCTC
73738657 TCCCCTC
1 TCCCCTC
73738664 TCCCCTC
1 TCCCCTC
73738671 T
1 T
73738672 TCTCACCCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.00, C:0.69, G:0.00, T:0.31
Consensus pattern (7 bp):
TCCCCTC
Found at i:73756855 original size:40 final size:40
Alignment explanation
Indices: 73756800--73756967 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
73756790 TGAATGATAC
* *
73756800 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
73756840 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
73756880 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
73756920 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
73756960 CC-GGCTAA
1 CCGGGCTAA
73756968 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:73764909 original size:40 final size:40
Alignment explanation
Indices: 73764854--73765021 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
73764844 TGAATGATAC
* *
73764854 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
73764894 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
73764934 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
73764974 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
73765014 CC-GGCTAA
1 CCGGGCTAA
73765022 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:73770413 original size:28 final size:29
Alignment explanation
Indices: 73770382--73770446 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
73770372 TAAAGTGATT
73770382 TTGAGTAAAAATGT-AATT-AG-GGATTAAA
1 TTGAG-AAAAATGTAAATTGAGAGG-TTAAA
*
73770410 TTGAGAAAAGTGTAAATTGAGAGGTTAAA
1 TTGAGAAAAATGTAAATTGAGAGGTTAAA
*
73770439 TTGTGAAA
1 TTGAGAAA
73770447 TAGATGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 7 0.22
28 9 0.28
29 14 0.44
30 2 0.06
ACGTcount: A:0.45, C:0.00, G:0.25, T:0.31
Consensus pattern (29 bp):
TTGAGAAAAATGTAAATTGAGAGGTTAAA
Found at i:73770993 original size:43 final size:43
Alignment explanation
Indices: 73770932--73771098 Score: 160
Period size: 43 Copynumber: 3.9 Consensus size: 43
73770922 ATCGAGACGA
* * * *
73770932 GATTACATGTAATACCATGTCTAGGATATTGGCATTGTATTAT
1 GATTACATGTAAGACCATATCTGGGATATTGGCATTGTATAAT
* * * *
73770975 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT-TAAT
1 GATTACATGTAAGACCATATCTGGGATATTGGCATTGTATAAT
* * * * * *
73771017 CGATTTCGTGTAAGACCCTATCTGGGATAGTGGCAGTGATATGA-
1 -GATTACATGTAAGACCATATCTGGGATATTGGCATTG-TATAAT
*
73771061 GATAACATGTAAGACCATATCTGGGATA-TGGCATTGTA
1 GATTACATGTAAGACCATATCTGGGATATTGGCATTGTA
73771099 CGAGTTTATG
Statistics
Matches: 102, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
41 2 0.02
42 10 0.10
43 87 0.85
44 1 0.01
45 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (43 bp):
GATTACATGTAAGACCATATCTGGGATATTGGCATTGTATAAT
Found at i:73774378 original size:46 final size:46
Alignment explanation
Indices: 73774325--73774420 Score: 192
Period size: 46 Copynumber: 2.1 Consensus size: 46
73774315 GAAAAATTTG
73774325 ATATAATTTTGGGTATGGATTGGCTAACGCTGCATGATGCCATTGT
1 ATATAATTTTGGGTATGGATTGGCTAACGCTGCATGATGCCATTGT
73774371 ATATAATTTTGGGTATGGATTGGCTAACGCTGCATGATGCCATTGT
1 ATATAATTTTGGGTATGGATTGGCTAACGCTGCATGATGCCATTGT
73774417 ATAT
1 ATAT
73774421 TGCAAACGAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (46 bp):
ATATAATTTTGGGTATGGATTGGCTAACGCTGCATGATGCCATTGT
Found at i:73778196 original size:28 final size:29
Alignment explanation
Indices: 73778165--73778219 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
73778155 GATTTTGAGT
*
73778165 AAAAATGCATATT-AGGGATTAAATTAAG
1 AAAAATGCAAATTGAGGGATTAAATTAAG
* * *
73778193 AAAAGTGTAAATTGAGGGGTTAAATTA
1 AAAAATGCAAATTGAGGGATTAAATTA
73778220 TAAAATAGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 10 0.45
29 12 0.55
ACGTcount: A:0.47, C:0.02, G:0.22, T:0.29
Consensus pattern (29 bp):
AAAAATGCAAATTGAGGGATTAAATTAAG
Found at i:73780246 original size:27 final size:27
Alignment explanation
Indices: 73780204--73780362 Score: 173
Period size: 27 Copynumber: 5.9 Consensus size: 27
73780194 GCTAGGCTGC
* *
73780204 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
*
73780231 CAGATATTGTGGCAGAGCCACTAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
73780257 CAGATATATGTGGCAGAGCCACTAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
** * *
73780284 CAGATAATTGTGGCCTAGCCGCCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
73780311 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
73780338 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
73780363 GACGTTTCCT
Statistics
Matches: 112, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
26 10 0.09
27 98 0.88
28 4 0.04
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:73780363 original size:54 final size:54
Alignment explanation
Indices: 73780204--73780365 Score: 229
Period size: 54 Copynumber: 3.0 Consensus size: 54
73780194 GCTAGGCTGC
* * * * *
73780204 CAGATAT-TGTGACAGAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACTAGAA
1 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGGA
* * *
73780257 CAGATATATGTGGCAGAGCCACTAGATCAGATAATTGTGGCCTAGCCGCCAGGA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
73780311 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
73780365 C
1 C
73780366 GTTTCCTCCA
Statistics
Matches: 96, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
53 12 0.12
54 84 0.88
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.20
Consensus pattern (54 bp):
CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
Found at i:73780619 original size:16 final size:17
Alignment explanation
Indices: 73780598--73780630 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
73780588 CCAATTTGGG
73780598 CCCG-TTGGCCCATTAT
1 CCCGTTTGGCCCATTAT
73780614 CCCGTTTTGGCCCATTA
1 CCCG-TTTGGCCCATTA
73780631 AGCCCAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
18 11 0.73
ACGTcount: A:0.12, C:0.36, G:0.18, T:0.33
Consensus pattern (17 bp):
CCCGTTTGGCCCATTAT
Found at i:73791840 original size:2 final size:2
Alignment explanation
Indices: 73791833--73791861 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
73791823 GATACTAGTC
73791833 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73791862 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73795824 original size:47 final size:47
Alignment explanation
Indices: 73795584--73795816 Score: 358
Period size: 47 Copynumber: 5.0 Consensus size: 47
73795574 TTAGGATTTT
* ** * *
73795584 ATGTGATGAACGTGAATGTGTATATATGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
73795631 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
73795678 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
73795725 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
73795772 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
73795817 TAGTGTGAAG
Statistics
Matches: 169, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 169 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:73796124 original size:37 final size:37
Alignment explanation
Indices: 73795979--73796123 Score: 209
Period size: 37 Copynumber: 3.9 Consensus size: 37
73795969 GGAAATATAT
*
73795979 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
73796016 TCCGGGTAAGACTCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
73796053 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
73796090 TCCGGATAAGACCCGATAACTTCGTTTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
73796124 TCGTCTGAGC
Statistics
Matches: 96, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:73813622 original size:22 final size:22
Alignment explanation
Indices: 73813596--73813639 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
73813586 AACTATTACC
*
73813596 ATAATTAATTTTAAATAATTTT
1 ATAATAAATTTTAAATAATTTT
* *
73813618 ATAATAAATTTTGATTAATTTT
1 ATAATAAATTTTAAATAATTTT
73813640 GATCATTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (22 bp):
ATAATAAATTTTAAATAATTTT
Found at i:73817476 original size:37 final size:36
Alignment explanation
Indices: 73817423--73817492 Score: 95
Period size: 37 Copynumber: 1.9 Consensus size: 36
73817413 AAAAAGGAAA
* *
73817423 GATAAAATTGACGTTGAGTAGCTCAGAATCCACGGTT
1 GATAAAATCGACGTTGAATAGCTC-GAATCCACGGTT
* *
73817460 GATAAAATCGATGTTGAATAGCTCGAATTCACG
1 GATAAAATCGACGTTGAATAGCTCGAATCCACG
73817493 ATTTTTATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
36 8 0.28
37 21 0.72
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (36 bp):
GATAAAATCGACGTTGAATAGCTCGAATCCACGGTT
Found at i:73831768 original size:40 final size:40
Alignment explanation
Indices: 73831709--73831850 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
73831699 AAATTGAATG
* * *
73831709 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
73831749 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
73831789 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
73831829 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
73831851 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:73831874 original size:40 final size:39
Alignment explanation
Indices: 73831747--73831876 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
73831737 ATGCTGGAAA
* * *
73831747 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* *
73831788 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
73831826 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
73831867 TTATATCCGG
1 TTATATCCGG
73831877 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:73836734 original size:46 final size:45
Alignment explanation
Indices: 73836684--73836859 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
73836674 TGTTTGGGCA
73836684 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
73836730 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
73836777 TCTGAGCTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
73836823 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73836860 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:73836839 original size:93 final size:93
Alignment explanation
Indices: 73836680--73836851 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
73836670 AGGATGTTTG
* * * *
73836680 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
73836745 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
73836773 GGCATCTGAGCTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
73836838 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
73836852 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:73839850 original size:14 final size:15
Alignment explanation
Indices: 73839801--73839850 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
73839791 GTATCTTGGG
*
73839801 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
73839816 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
73839831 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
73839845 TTTCTT
1 TTTCTT
73839851 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:73842287 original size:46 final size:45
Alignment explanation
Indices: 73842237--73842412 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
73842227 TGTTTGGGCA
73842237 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
73842283 TCCGAACTCGTTGAATTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
73842330 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
73842376 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73842413 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 67 0.63
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:73842395 original size:93 final size:93
Alignment explanation
Indices: 73842233--73842404 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
73842223 AGGATGTTTG
* * *
73842233 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAA
*
73842298 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
73842326 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAA
73842391 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
73842405 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAA
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:73845581 original size:21 final size:19
Alignment explanation
Indices: 73845549--73845601 Score: 63
Period size: 18 Copynumber: 2.7 Consensus size: 19
73845539 TCATATTTAG
*
73845549 CAACTTCTTCTTCTTCAGCAA
1 CAACTTCCTCTTCTT--GCAA
*
73845570 CCACTTCCTCTTC-TGCAA
1 CAACTTCCTCTTCTTGCAA
73845588 CAACTTCCTCTTCT
1 CAACTTCCTCTTCT
73845602 GTAGCAGTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
18 16 0.57
20 1 0.04
21 11 0.39
ACGTcount: A:0.19, C:0.40, G:0.04, T:0.38
Consensus pattern (19 bp):
CAACTTCCTCTTCTTGCAA
Found at i:73845601 original size:18 final size:18
Alignment explanation
Indices: 73845555--73845602 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
73845545 TTAGCAACTT
* * *
73845555 CTTCTTCTTCAGCAACCA
1 CTTCCTCTTCTGCAACAA
73845573 CTTCCTCTTCTGCAACAA
1 CTTCCTCTTCTGCAACAA
73845591 CTTCCTCTTCTG
1 CTTCCTCTTCTG
73845603 TAGCAGTAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.17, C:0.40, G:0.06, T:0.38
Consensus pattern (18 bp):
CTTCCTCTTCTGCAACAA
Found at i:73854155 original size:43 final size:43
Alignment explanation
Indices: 73854094--73854241 Score: 153
Period size: 43 Copynumber: 3.4 Consensus size: 43
73854084 AATTCCAACA
*
73854094 TCCCAGACGTGGTCTTACATGTAAA-CAAATATCGATGCCACTG
1 TCCCAGACATGGTCTTACATGTAAATCAAATATCGATGCCAC-G
* *
73854137 TCCCAGACA-GGATCTTACACG-AAATCAAATA-CGATGTCAACG
1 TCCCAGACATGG-TCTTACATGTAAATCAAATATCGATG-CCACG
* * *
73854179 TCCCAAACATGGCCTTACATGTAAATCATAA-GTCGATGCCAACG
1 TCCCAGACATGGTCTTACATGTAAATCA-AATATCGATGCC-ACG
*
73854223 TCCCAGACGTGGTCTTACA
1 TCCCAGACATGGTCTTACA
73854242 CGATAACACA
Statistics
Matches: 86, Mismatches: 11, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
42 26 0.30
43 34 0.40
44 26 0.30
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAAATCAAATATCGATGCCACG
Found at i:73855268 original size:13 final size:13
Alignment explanation
Indices: 73855250--73855274 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73855240 ACAAACGATT
73855250 AAATTTTCACACG
1 AAATTTTCACACG
73855263 AAATTTTCACAC
1 AAATTTTCACAC
73855275 ATACTAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:73859047 original size:41 final size:43
Alignment explanation
Indices: 73858957--73859049 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
73858947 CAATGCCAAC
* * * **
73858957 GTCCCAGACATGGTCTTACATGCTATCTCATATCGATGCTATT
1 GTCCCAGACAGGGTCTTACACGCAATCAAATATCGATGCTATT
73859000 GTCCCAGACAGGGTCTTACACG-AATCAAATA-CGATGCTGA-T
1 GTCCCAGACAGGGTCTTACACGCAATCAAATATCGATGCT-ATT
73859041 GTCCCAGAC
1 GTCCCAGAC
73859050 CACGTAACCA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
41 17 0.39
42 7 0.16
43 20 0.45
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (43 bp):
GTCCCAGACAGGGTCTTACACGCAATCAAATATCGATGCTATT
Found at i:73859127 original size:45 final size:45
Alignment explanation
Indices: 73859058--73859157 Score: 164
Period size: 45 Copynumber: 2.2 Consensus size: 45
73859048 ACCACGTAAC
*
73859058 CACATATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAAA
1 CACATATATCGATGCCAACATCCCAGACATGGTCTTACACGAAAA
* *
73859103 CACATATATTGATGCCAACATCCCAGACGTGGTCTTACACGAAAA
1 CACATATATCGATGCCAACATCCCAGACATGGTCTTACACGAAAA
*
73859148 CACATGTATC
1 CACATATATC
73859158 AATACTGTAA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 50 1.00
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (45 bp):
CACATATATCGATGCCAACATCCCAGACATGGTCTTACACGAAAA
Found at i:73864888 original size:49 final size:49
Alignment explanation
Indices: 73864830--73865116 Score: 506
Period size: 49 Copynumber: 5.9 Consensus size: 49
73864820 GTATGAGATG
*
73864830 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
73864879 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
73864928 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
73864977 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
73865024 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
73865073 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
73865117 CATATGTGTG
Statistics
Matches: 228, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 43 0.19
49 185 0.81
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:73865149 original size:145 final size:146
Alignment explanation
Indices: 73864830--73865121 Score: 469
Period size: 145 Copynumber: 2.0 Consensus size: 146
73864820 GTATGAGATG
* * * *
73864830 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATACATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGAG-ATATATATGTGATAAGG
73864895 CCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTG
65 CCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTG
* *
73864960 ATGAATGTGAAAGTGTA
130 ATGAATGTGAAAATATA
*
73864977 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG-TATATATGTGATAAGGC
1 TATACATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGAGATATATATGTGATAAGGC
* * *
73865041 CTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
66 CTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGA
73865106 TGAATGTGAAACATAT
131 TGAATGTGAAA-ATAT
73865122 GTGTGATATG
Statistics
Matches: 136, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
145 90 0.66
146 2 0.01
147 44 0.32
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (146 bp):
TATACATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGAGATATATATGTGATAAGGC
CTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGA
TGAATGTGAAAATATA
Found at i:73865170 original size:48 final size:48
Alignment explanation
Indices: 73865108--73865259 Score: 268
Period size: 48 Copynumber: 3.2 Consensus size: 48
73865098 CGATGTGATG
* *
73865108 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCAAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
73865156 AATGTGATATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
73865204 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
73865252 AATGTGAA
1 AATGTGAA
73865260 TGTTGTAACA
Statistics
Matches: 99, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 99 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.33
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:73865353 original size:37 final size:37
Alignment explanation
Indices: 73865299--73865426 Score: 229
Period size: 37 Copynumber: 3.4 Consensus size: 37
73865289 AACTTGGAAA
* *
73865299 TATGTTCCGGGTGAGACCCGATGACTATGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
73865337 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
73865374 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
73865411 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
73865427 TTCGTAATAA
Statistics
Matches: 88, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
37 84 0.95
38 4 0.05
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:73866899 original size:23 final size:23
Alignment explanation
Indices: 73866866--73866911 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
73866856 CTAAATCGGG
73866866 CTGTTACAGATGCCGACATCCCA
1 CTGTTACAGATGCCGACATCCCA
* *
73866889 CTGTTATAGATGCTGACATCCCA
1 CTGTTACAGATGCCGACATCCCA
73866912 GACATGGTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (23 bp):
CTGTTACAGATGCCGACATCCCA
Found at i:73867511 original size:15 final size:15
Alignment explanation
Indices: 73867488--73867518 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
73867478 TCAAAAATTC
73867488 CAATACAAAACATAT
1 CAATACAAAACATAT
*
73867503 CAATGCAAAACATAT
1 CAATACAAAACATAT
73867518 C
1 C
73867519 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.23, G:0.03, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:73870683 original size:23 final size:23
Alignment explanation
Indices: 73870640--73870685 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
73870630 CTCGCAATAG
**
73870640 ATAGTAGCCTAATCTTGAATCTA
1 ATAGTAGCCTAATCTCAAATCTA
*
73870663 ATAGTAGCCTGATCTCAAATCTA
1 ATAGTAGCCTAATCTCAAATCTA
73870686 TTTTCAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.33
Consensus pattern (23 bp):
ATAGTAGCCTAATCTCAAATCTA
Found at i:73875479 original size:2 final size:2
Alignment explanation
Indices: 73875472--73875498 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
73875462 AGTCATATTC
73875472 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
73875499 AGCATATGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73876799 original size:2 final size:2
Alignment explanation
Indices: 73876792--73876821 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
73876782 TTATGATTTC
73876792 AT AT AT AT AT AT AT AT AT AT AT AT CAT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT -AT AT A
73876822 CTTTCACATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:73878702 original size:44 final size:44
Alignment explanation
Indices: 73878558--73878779 Score: 243
Period size: 45 Copynumber: 5.0 Consensus size: 44
73878548 ATGCTATCTC
** * *
73878558 ATATCGATGCCATTGTCCCAGACAGGGTCTTACACG-AAC-CAA
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAACACAT
* * * * *
73878600 ATAT-GATGTCGATGTCCCAAACATGGTCTTACACGTAACCACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACG-AAACACAT
73878644 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAACACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAACACAT
* * *
73878688 ATATCGATGCCAACGTCCCAGACGTGTTCTTACACAAAAACACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACAC-GAAACACAT
** * * *
73878733 ATATCGATGCTGACGTCCCAAACGTGGTCTTACATGAAAACACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACG-AAACACAT
73878778 AT
1 AT
73878780 CAGAATCCAA
Statistics
Matches: 153, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
41 26 0.17
42 4 0.03
43 2 0.01
44 46 0.30
45 75 0.49
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.23
Consensus pattern (44 bp):
ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAACACAT
Found at i:73878741 original size:89 final size:88
Alignment explanation
Indices: 73878558--73878779 Score: 250
Period size: 89 Copynumber: 2.5 Consensus size: 88
73878548 ATGCTATCTC
** * * * * *
73878558 ATATCGATGCCATTGTCCCAGACAGGGTCTTACACG-AAC-CAAATATGATGTCGATGTCCCAAA
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAACACATATATGATGCCAACGTCCCAAA
** *
73878621 CATGGTCTTACACGTAACCACAT
66 CATGGTCTTACACAAAAACACAT
*
73878644 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAACACATATATCGATGCCAACGTCCCAG
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAACACATATAT-GATGCCAACGTCCCAA
* *
73878709 ACGTGTTCTTACACAAAAACACAT
65 ACATGGTCTTACACAAAAACACAT
** * * *
73878733 ATATCGATGCTGACGTCCCAAACGTGGTCTTACATGAAAACACATAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACG-AAACACATAT
73878780 CAGAATCCAA
Statistics
Matches: 114, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
86 33 0.29
87 3 0.03
88 6 0.05
89 62 0.54
90 10 0.09
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.23
Consensus pattern (88 bp):
ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAACACATATATGATGCCAACGTCCCAAA
CATGGTCTTACACAAAAACACAT
Found at i:73879347 original size:15 final size:15
Alignment explanation
Indices: 73879327--73879357 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
73879317 TCAAAAATTC
73879327 CAATCCAAAACATAT
1 CAATCCAAAACATAT
73879342 CAATCCAAAACATAT
1 CAATCCAAAACATAT
73879357 C
1 C
73879358 CTTCATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATCCAAAACATAT
Found at i:73879888 original size:14 final size:15
Alignment explanation
Indices: 73879871--73879899 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
73879861 TCACGAAAAT
73879871 TTCACACAT-ATAAA
1 TTCACACATAATAAA
73879885 TTCACACATAATAAA
1 TTCACACATAATAAA
73879900 CACTAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:73884657 original size:25 final size:25
Alignment explanation
Indices: 73884582--73884657 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
73884572 ATGTATATAT
73884582 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
73884607 ATGAT-TGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
73884629 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
73884654 GTGA
1 GTGA
73884658 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 7 0.19
23 9 0.25
24 9 0.25
25 11 0.31
ACGTcount: A:0.28, C:0.13, G:0.34, T:0.25
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:73884699 original size:22 final size:22
Alignment explanation
Indices: 73884674--73884751 Score: 61
Period size: 22 Copynumber: 3.4 Consensus size: 22
73884664 ACATGTATAT
73884674 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
73884696 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
*
73884720 TATGTGATGAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
73884743 ATGTGATAA
1 ATGTGATAA
73884752 ATGTGAACAT
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
22 16 0.39
23 9 0.22
24 8 0.20
25 8 0.20
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.24
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:73884795 original size:47 final size:47
Alignment explanation
Indices: 73884508--73884787 Score: 416
Period size: 47 Copynumber: 6.0 Consensus size: 47
73884498 TTAGGATTTT
** *
73884508 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
73884555 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
73884602 ATGTGATGATTGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
73884649 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
73884696 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
73884743 ATGTGATAAATGTGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
73884788 TGGTGTGAAA
Statistics
Matches: 209, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 209 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:73885000 original size:37 final size:37
Alignment explanation
Indices: 73884950--73885138 Score: 297
Period size: 37 Copynumber: 5.1 Consensus size: 37
73884940 GGAAATATAT
* *
73884950 TCCGGGTGAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
73884987 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
73885024 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
73885061 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
73885098 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTACG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
73885135 TCCG
1 TCCG
73885139 AGCTAAAGGT
Statistics
Matches: 143, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 143 1.00
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:73895483 original size:40 final size:40
Alignment explanation
Indices: 73895417--73895583 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
73895407 AAATTGAATG
* * *
73895417 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
73895456 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
73895496 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
73895536 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
73895576 ATATCCGG
1 ATATCCGG
73895584 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:73903509 original size:40 final size:40
Alignment explanation
Indices: 73903443--73903609 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
73903433 AAATTGAATG
* * *
73903443 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
73903482 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
73903522 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
73903562 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
73903602 ATATCCGG
1 ATATCCGG
73903610 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:73908789 original size:67 final size:70
Alignment explanation
Indices: 73908705--73908863 Score: 247
Period size: 68 Copynumber: 2.3 Consensus size: 70
73908695 GAGATGTATC
73908705 CCATGTAGACAAGAGAGCTACGTGAAAGAT-AATGTAGCTAGG-CGCATGCGTGATT-CAATGTG
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA-G-G
73908767 AAGGACA
64 AAGGACA
* *
73908774 -CATGTA-ACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGGAC
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGGAA
73908837 GGACA
66 GGACA
73908842 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
73908864 AGACAAATCG
Statistics
Matches: 83, Mismatches: 2, Indels: 9
0.88 0.02 0.10
Matches are distributed among these distances:
67 22 0.27
68 24 0.29
69 20 0.24
70 17 0.20
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.19
Consensus pattern (70 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGGAA
GGACA
Found at i:73916309 original size:71 final size:71
Alignment explanation
Indices: 73916221--73916384 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
73916211 GAGATGTATC
73916221 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73916286 AGGACA
66 AGGACA
*
73916292 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73916357 AGGACA
66 AGGACA
73916363 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
73916385 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:73917857 original size:20 final size:19
Alignment explanation
Indices: 73917811--73917857 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
73917801 GTGAGACCCC
*
73917811 TGAAGTTTTGAAAATTATT
1 TGAACTTTTGAAAATTATT
*
73917830 T-AAGCTTTTGAAAAATTCTT
1 TGAA-CTTTTG-AAAATTATT
73917850 TGAACTTT
1 TGAACTTT
73917858 CAATTTAGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
18 2 0.09
19 6 0.26
20 13 0.57
21 2 0.09
ACGTcount: A:0.34, C:0.06, G:0.13, T:0.47
Consensus pattern (19 bp):
TGAACTTTTGAAAATTATT
Found at i:73919621 original size:46 final size:46
Alignment explanation
Indices: 73919568--73919743 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
73919558 TATTTGGGCA
73919568 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
73919614 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
73919661 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
73919707 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73919744 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:73919723 original size:93 final size:93
Alignment explanation
Indices: 73919564--73919735 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
73919554 GAGATATTTG
* *
73919564 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
73919629 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
73919657 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
73919722 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
73919736 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:73924610 original size:93 final size:93
Alignment explanation
Indices: 73924498--73924669 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
73924488 CGCCCATAAG
* *
73924498 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73924563 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
73924591 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73924656 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
73924670 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73924666 original size:46 final size:46
Alignment explanation
Indices: 73924491--73924666 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
73924481 TGTAACCCGC
* * *
73924491 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
73924537 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
73924587 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
73924630 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
73924667 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73932190 original size:93 final size:93
Alignment explanation
Indices: 73932078--73932249 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
73932068 CGCCCATAAG
* *
73932078 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73932143 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
73932171 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73932236 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
73932250 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73932246 original size:46 final size:46
Alignment explanation
Indices: 73932071--73932246 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
73932061 TGTAACCCGC
* * *
73932071 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
73932117 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
73932167 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
73932210 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
73932247 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73937205 original size:26 final size:26
Alignment explanation
Indices: 73937169--73937250 Score: 103
Period size: 26 Copynumber: 3.2 Consensus size: 26
73937159 TTAGGGTTAC
*
73937169 CGTTATTTTAGCTCGGAGAAGCTTAT
1 CGTTATTTTAGCTCGGAGGAGCTTAT
*
73937195 CGTTATTTTAGCTCAGAGGAGCTTA-
1 CGTTATTTTAGCTCGGAGGAGCTTAT
* * *
73937220 CTATTATTTTAGCTTGAAGGAGCTTAT
1 C-GTTATTTTAGCTCGGAGGAGCTTAT
73937247 CGTT
1 CGTT
73937251 TACAGCTCGT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
25 1 0.02
26 45 0.96
27 1 0.02
ACGTcount: A:0.23, C:0.15, G:0.22, T:0.40
Consensus pattern (26 bp):
CGTTATTTTAGCTCGGAGGAGCTTAT
Found at i:73938578 original size:45 final size:46
Alignment explanation
Indices: 73938472--73938684 Score: 152
Period size: 47 Copynumber: 4.5 Consensus size: 46
73938462 TTTGTGTTCG
* * * *
73938472 AGTGTAAGA-CATGTCTGGGACATGCATCAGC-CATATTATGA-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATC-GCACGTA-GA-GAGGTGTC
* * *
73938518 AGTGTAAGACGATGTCTGGGACATGTATC-CAC-TACGAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGCACGTA-GAGAGGTGTC
* * *
73938563 AGTGTAAGACCATGTCTAGGACATGCATCGGTACGTATAGAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGCATC-GCACGTAGAGAGGTGTC
* * *
73938610 AGTGTAAGACCATGTCTGGGATATGGCATCGGCACGGATATGTGA-GAG-C
1 AGTGTAAGACCATGTCTGGGACAT-GCATC-GCAC-G-TA-GAGAGGTGTC
*
73938659 TAGTGTAAGAGCATGTCTGGGACATG
1 -AGTGTAAGACCATGTCTGGGACATG
73938685 GCGTCGGCCT
Statistics
Matches: 136, Mismatches: 20, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
44 2 0.01
45 33 0.24
46 10 0.07
47 49 0.36
48 11 0.08
49 3 0.02
50 26 0.19
51 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGCACGTAGAGAGGTGTC
Found at i:73940315 original size:39 final size:39
Alignment explanation
Indices: 73940258--73940448 Score: 346
Period size: 39 Copynumber: 4.9 Consensus size: 39
73940248 AAGCAAGACA
*
73940258 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
73940297 CTAGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
73940336 CTGGAAATGTATCCGGGGTAAAGTCCTGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
73940375 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
73940414 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTT
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTT
73940449 TGTGTTGGTA
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 145 1.00
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:73957119 original size:47 final size:46
Alignment explanation
Indices: 73957054--73957266 Score: 186
Period size: 47 Copynumber: 4.5 Consensus size: 46
73957044 TTTTTGTGCT
73957054 AGTGTAAGA-CATGTCTGGGACATGCATCAGC-CATATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATC-GCACATATTA-GAGAGCC
* ** * *
73957100 AGTGTAAGACCATGTCTGGGACATGTATCG-AC-TACGAGATATGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGCACATATTAGAGA-GCC
* * *
73957145 AGTGTAAGACCATGTCTGGGACATGCATCGACACGTA-TAGAAGTGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCG-CACATATTAG-AGAGCC
* *
73957192 AGTGTAAGACCATGTCTGAGACATAGCATCGGCACAGATATGT-GAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATC-GCAC--ATAT-TAGAGAGCC
* *
73957242 AGTGTAAGACCATGTTTAGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
73957267 GCGTTGGCCT
Statistics
Matches: 137, Mismatches: 17, Indels: 23
0.77 0.10 0.13
Matches are distributed among these distances:
44 3 0.02
45 34 0.25
46 11 0.08
47 48 0.35
48 11 0.08
49 2 0.01
50 26 0.19
51 1 0.01
52 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGCACATATTAGAGAGCC
Found at i:73959895 original size:40 final size:40
Alignment explanation
Indices: 73959850--73960016 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
73959840 CGGAATATAA
73959850 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
73959890 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
73959930 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
73959970 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73960009 CCGGATAT
1 CCGGATAT
73960017 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73960000 original size:80 final size:79
Alignment explanation
Indices: 73959866--73960016 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
73959856 ATAATCACGT
*
73959866 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
73959931 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
73959946 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
73960009 CCGGATAT
64 CCGGATAT
73960017 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:73960864 original size:17 final size:19
Alignment explanation
Indices: 73960841--73960886 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
73960831 AAGAAGCATG
73960841 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
73960859 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
73960877 AATCATGCTC
1 AATCATGCTC
73960887 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:73967851 original size:40 final size:40
Alignment explanation
Indices: 73967806--73967973 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
73967796 CGGAATACAA
73967806 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
73967846 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
73967886 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
73967926 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
73967966 CCGGATAT
1 CCGGATAT
73967974 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:73970622 original size:29 final size:29
Alignment explanation
Indices: 73970589--73970670 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
73970579 TGACGAGATA
*
73970589 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
73970618 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
73970647 GGCACTAAGTGTGCATGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAA
73970671 AAAAAAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:73978500 original size:29 final size:29
Alignment explanation
Indices: 73978467--73978548 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
73978457 TGACGAGATA
*
73978467 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
73978496 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
73978525 GGCACTAAGTGTGCATGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAA
73978549 AAAAAATAAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:73980645 original size:9 final size:9
Alignment explanation
Indices: 73980631--73980663 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
73980621 GTTAAACGAA
73980631 TCGAGTTAT
1 TCGAGTTAT
*
73980640 TCGAGTTAA
1 TCGAGTTAT
73980649 TCGAGTTAT
1 TCGAGTTAT
73980658 TCGAGT
1 TCGAGT
73980664 CAACTCGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:73980652 original size:18 final size:18
Alignment explanation
Indices: 73980629--73980663 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
73980619 GAGTTAAACG
73980629 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
73980647 AATCGAGTTATTCGAGT
1 AATCGAGTTATTCGAGT
73980664 CAACTCGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:73981117 original size:17 final size:17
Alignment explanation
Indices: 73981092--73981133 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
73981082 TACTCCCCTA
*
73981092 TTTATTTCCCCTCAAACT
1 TTTATTTCCCC-AAAACT
73981110 TTTA-TTCCCCAAAACTT
1 TTTATTTCCCCAAAAC-T
73981127 TTTATTT
1 TTTATTT
73981134 TCCCTCTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 4 0.19
17 11 0.52
18 6 0.29
ACGTcount: A:0.24, C:0.26, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTATTTCCCCAAAACT
Found at i:73983765 original size:75 final size:75
Alignment explanation
Indices: 73983629--73983838 Score: 235
Period size: 75 Copynumber: 2.8 Consensus size: 75
73983619 TCCGACAATA
* * * ** * * *
73983629 GATGTGCTCAGCACTAGTCAAACAAATCGAAGAAAG-TTGTGCCCAGCACTAGTCGGGTAAACCA
1 GATGTGCCCAGCACTAGTCAAATAAATCG-ACAAAGATTGCACCCAACGCTAGTCGGATAAACCA
73983693 ACAAATATAAT
65 ACAAATATAAT
* * * * * *
73983704 GGTGTGCCTAGCACTAGTCAGATAAA-CTGACAAAGGTTGCACCCGACGCTAGTCGAATAAACCA
1 GATGTGCCCAGCACTAGTCAAATAAATC-GACAAAGATTGCACCCAACGCTAGTCGGATAAACCA
*
73983768 ACAAGTATAAT
65 ACAAATATAAT
* *
73983779 GATGTGCCCAGCACTAGTCAAATAAATCGACAAAGATTGCGCCCAATGCTAGTCGGATAA
1 GATGTGCCCAGCACTAGTCAAATAAATCGACAAAGATTGCACCCAACGCTAGTCGGATAA
73983839 CCGACAATAG
Statistics
Matches: 110, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
74 6 0.05
75 103 0.94
76 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.20
Consensus pattern (75 bp):
GATGTGCCCAGCACTAGTCAAATAAATCGACAAAGATTGCACCCAACGCTAGTCGGATAAACCAA
CAAATATAAT
Found at i:73983913 original size:36 final size:34
Alignment explanation
Indices: 73983827--73983913 Score: 86
Period size: 36 Copynumber: 2.5 Consensus size: 34
73983817 GCGCCCAATG
* *
73983827 CTAGTCGGATAACCGACAATAGTTGTGCCATGCA
1 CTAGTCGGATAACCAACAATAATTGTGCCATGCA
* * *
73983861 CTAGTTGGATGTACCAACGATAAATTGTGCC-TAGCA
1 CTAGTCGGAT-AACCAACAAT-AATTGTGCCAT-GCA
73983897 CTAGTCGGATAAACCAA
1 CTAGTCGGAT-AACCAA
73983914 AGATTTCGAT
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
34 9 0.21
35 8 0.19
36 25 0.60
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (34 bp):
CTAGTCGGATAACCAACAATAATTGTGCCATGCA
Found at i:73984287 original size:32 final size:32
Alignment explanation
Indices: 73984241--73984301 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
73984231 ATAGTTTCCA
* *
73984241 GTGATCGAGCTTAATTAATCGACGACTTTTCG
1 GTGATCAAGCTTAATTAATCGACAACTTTTCG
* *
73984273 GTGATCAAGGTTAATTATTCGACAACTTT
1 GTGATCAAGCTTAATTAATCGACAACTTT
73984302 CTCCTTCCCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (32 bp):
GTGATCAAGCTTAATTAATCGACAACTTTTCG
Found at i:73990208 original size:37 final size:37
Alignment explanation
Indices: 73990163--73990242 Score: 115
Period size: 37 Copynumber: 2.2 Consensus size: 37
73990153 AGGCTAGGCA
* **
73990163 CGTGTTATTTGTTGGATTAGCTCTCATGATTGTTTGG
1 CGTGTTATTGGTTGGATTAGCTCTCATGAGCGTTTGG
*
73990200 CGTGTTATTGGTTGGATTAGCTCTTATGAGCGTTTGG
1 CGTGTTATTGGTTGGATTAGCTCTCATGAGCGTTTGG
*
73990237 TGTGTT
1 CGTGTT
73990243 TTCATTGAAC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.12, C:0.10, G:0.30, T:0.47
Consensus pattern (37 bp):
CGTGTTATTGGTTGGATTAGCTCTCATGAGCGTTTGG
Found at i:73999871 original size:18 final size:18
Alignment explanation
Indices: 73999834--73999871 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
73999824 GAGTTAAATG
* *
73999834 AATCGAGTTATTCTATTT
1 AATCGAGTTATTCGAGTT
73999852 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
73999870 AA
1 AA
73999872 CTCAATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.42
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:74001297 original size:47 final size:47
Alignment explanation
Indices: 74001189--74001315 Score: 164
Period size: 47 Copynumber: 2.7 Consensus size: 47
74001179 GAGTGATACT
* * * *
74001189 TTGATTTGACTACGGGCCATGGTATAGGTATTTCAGTGAGGAGTTACC
1 TTGATTTGGCTACGGGCCATGGTATAGGTA-CTCAGGGAGAAGTTACC
* * * *
74001237 TTAATTTGGCTACGGGCCATGGTGTAGGTACTCCGGGATAAGTTACC
1 TTGATTTGGCTACGGGCCATGGTATAGGTACTCAGGGAGAAGTTACC
*
74001284 TTGATTTGGCTACGAGCCATGGTATAGGTACT
1 TTGATTTGGCTACGGGCCATGGTATAGGTACT
74001316 TATCAATTGA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
47 41 0.60
48 27 0.40
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (47 bp):
TTGATTTGGCTACGGGCCATGGTATAGGTACTCAGGGAGAAGTTACC
Found at i:74002910 original size:18 final size:18
Alignment explanation
Indices: 74002884--74002918 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
74002874 CACTTTCTGC
*
74002884 TTTTCCTTTTTTTTTTCT
1 TTTTCCTTTTTTCTTTCT
*
74002902 TTTTTCTTTTTTCTTTC
1 TTTTCCTTTTTTCTTTC
74002919 GCATTGTCCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTCCTTTTTTCTTTCT
Found at i:74006804 original size:51 final size:51
Alignment explanation
Indices: 74006721--74006863 Score: 180
Period size: 51 Copynumber: 2.8 Consensus size: 51
74006711 TCAACGATGG
* * * *
74006721 TTTCAGGGTGGGAT-TCATGCTTTCACTCCGGGGACTCAACCACTTGGCCAA
1 TTTCACGGTGGGATCT-ATGCTTCCACACCGGGGACTCAACCACTAGGCCAA
* * *
74006772 TTTCACGGTGGGATCTATGCTTCCACAGCGGGGACTCAACCACTAGGGCAG
1 TTTCACGGTGGGATCTATGCTTCCACACCGGGGACTCAACCACTAGGCCAA
* * *
74006823 CTTCACGGTGGGATCTTTGCTTCCACACCGGGGGCTCAACC
1 TTTCACGGTGGGATCTATGCTTCCACACCGGGGACTCAACC
74006864 GCAAGAGCTA
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
51 79 0.99
52 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.27, T:0.24
Consensus pattern (51 bp):
TTTCACGGTGGGATCTATGCTTCCACACCGGGGACTCAACCACTAGGCCAA
Found at i:74009325 original size:63 final size:62
Alignment explanation
Indices: 74009239--74009365 Score: 175
Period size: 63 Copynumber: 2.0 Consensus size: 62
74009229 CTATTTTAAA
* * *
74009239 AAGAACTCGAAGATCTACAATTTAGACGA-AAGAATCATATATTAATAATAGTAGATTCCAGG
1 AAGAACTCGAAGATATACAATTTAGAC-ATAAGAACCACATATTAATAATAGTAGATTCCAGG
** *
74009301 AAGAACTCGGAAGATATATTATTTAGACATAAGAACCACATATTAATAATAGTAGATTCTAGG
1 AAGAACTC-GAAGATATACAATTTAGACATAAGAACCACATATTAATAATAGTAGATTCCAGG
74009364 AA
1 AA
74009366 AGTATTGCTC
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
62 9 0.16
63 48 0.84
ACGTcount: A:0.46, C:0.12, G:0.16, T:0.27
Consensus pattern (62 bp):
AAGAACTCGAAGATATACAATTTAGACATAAGAACCACATATTAATAATAGTAGATTCCAGG
Found at i:74013919 original size:20 final size:21
Alignment explanation
Indices: 74013894--74013948 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 21
74013884 AAAAATATAA
74013894 ATTTTGAAATTTTTATAAA-T
1 ATTTTGAAATTTTTATAAATT
*
74013914 ATTTTG-AA-TTTTAGAAAATT
1 ATTTTGAAATTTTTA-TAAATT
74013934 ATTTT-AAATTTTTAT
1 ATTTTGAAATTTTTAT
74013949 TGTAATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
18 5 0.17
19 5 0.17
20 14 0.48
21 5 0.17
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (21 bp):
ATTTTGAAATTTTTATAAATT
Found at i:74019556 original size:16 final size:17
Alignment explanation
Indices: 74019535--74019566 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
74019525 ACCAATTTGT
74019535 TAAAAT-AAATAAAAAA
1 TAAAATAAAATAAAAAA
74019551 TAAAATAAAATAAAAA
1 TAAAATAAAATAAAAA
74019567 GAACACAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (17 bp):
TAAAATAAAATAAAAAA
Found at i:74021480 original size:31 final size:31
Alignment explanation
Indices: 74021440--74021505 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
74021430 AACCCTTCCT
* *
74021440 GCATTAAATCTAACCAAAAACAACAAATATA
1 GCATGAAATCCAACCAAAAACAACAAATATA
* *
74021471 GCATGAAATCCAACCAAAAACAGCAAATGTA
1 GCATGAAATCCAACCAAAAACAACAAATATA
74021502 GCAT
1 GCAT
74021506 AAAAAATACA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.53, C:0.21, G:0.09, T:0.17
Consensus pattern (31 bp):
GCATGAAATCCAACCAAAAACAACAAATATA
Found at i:74022244 original size:13 final size:14
Alignment explanation
Indices: 74022218--74022246 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
74022208 ACTAACGACG
74022218 AATTAAACCATTAT
1 AATTAAACCATTAT
74022232 AATTAAA-CATTAT
1 AATTAAACCATTAT
74022245 AA
1 AA
74022247 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:74027692 original size:24 final size:24
Alignment explanation
Indices: 74027651--74027721 Score: 90
Period size: 24 Copynumber: 3.0 Consensus size: 24
74027641 TTAACTTAAA
*
74027651 TGATAAAACGGACGATAATATTTG
1 TGATAAAACGGACAATAATATTTG
* *
74027675 TGATAAAATGGATAATAATATTTG
1 TGATAAAACGGACAATAATATTTG
*
74027699 TGATAAAACGAACGAA-AATATTT
1 TGATAAAACGGAC-AATAATATTT
74027722 CAATAATAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
24 38 0.95
25 2 0.05
ACGTcount: A:0.46, C:0.06, G:0.17, T:0.31
Consensus pattern (24 bp):
TGATAAAACGGACAATAATATTTG
Found at i:74029633 original size:36 final size:35
Alignment explanation
Indices: 74029586--74029653 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 35
74029576 CGGCAGTTTC
*
74029586 GGGAACTGATTTGGGGAAACAA-TATTTGAGGGATGG
1 GGGAACTGATTTCGGGAAA-AATTATTTG-GGGATGG
74029622 GGGAACTGATTTCGGGAAAAATTATTTGGGGA
1 GGGAACTGATTTCGGGAAAAATTATTTGGGGA
74029654 AAAATTACTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
35 6 0.20
36 24 0.80
ACGTcount: A:0.31, C:0.06, G:0.37, T:0.26
Consensus pattern (35 bp):
GGGAACTGATTTCGGGAAAAATTATTTGGGGATGG
Found at i:74029653 original size:15 final size:15
Alignment explanation
Indices: 74029630--74029671 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
74029620 GGGGGAACTG
*
74029630 ATTTCGGGAAAAATT
1 ATTTGGGGAAAAATT
74029645 ATTTGGGGAAAAATT
1 ATTTGGGGAAAAATT
*
74029660 ACTTGGGGAAAA
1 ATTTGGGGAAAA
74029672 TGTTAAGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.40, C:0.05, G:0.26, T:0.29
Consensus pattern (15 bp):
ATTTGGGGAAAAATT
Found at i:74030520 original size:7 final size:7
Alignment explanation
Indices: 74030510--74030580 Score: 52
Period size: 7 Copynumber: 9.9 Consensus size: 7
74030500 TTTAAACCCT
74030510 TAAACCA
1 TAAACCA
74030517 TAAACCA
1 TAAACCA
* *
74030524 TAATCCC
1 TAAACCA
74030531 TAAACTCA
1 TAAAC-CA
*
74030539 TAATCCA
1 TAAACCA
**
74030546 TAAACTT
1 TAAACCA
**
74030553 TAAAATA
1 TAAACCA
*
74030560 TTAACTCA
1 TAAAC-CA
74030568 TAAACCA
1 TAAACCA
74030575 TAAACC
1 TAAACC
74030581 CCTAACCCAT
Statistics
Matches: 48, Mismatches: 14, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
7 38 0.79
8 10 0.21
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.25
Consensus pattern (7 bp):
TAAACCA
Found at i:74030540 original size:15 final size:15
Alignment explanation
Indices: 74030514--74030551 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
74030504 AACCCTTAAA
74030514 CCATAAAC-CATAAT
1 CCATAAACTCATAAT
*
74030528 CCCTAAACTCATAAT
1 CCATAAACTCATAAT
74030543 CCATAAACT
1 CCATAAACT
74030552 TTAAAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.45, C:0.32, G:0.00, T:0.24
Consensus pattern (15 bp):
CCATAAACTCATAAT
Done.