Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 239 of 410
Found at i:74030556 original size:22 final size:21
Alignment explanation
Indices: 74030502--74030580 Score: 59
Period size: 22 Copynumber: 3.6 Consensus size: 21
74030492 CCTTAACCTT
74030502 TAAACCCTTAAACCATAAACCA
1 TAAA-CCTTAAACCATAAACCA
* * *
74030524 TAATCCCTAAACTCATAATCCA
1 TAAACCTTAAAC-CATAAACCA
* ** *
74030546 TAAACTTTAAAATATTAACTCA
1 TAAACCTTAAACCATAAAC-CA
*
74030568 TAAACCATAAACC
1 TAAACCTTAAACC
74030581 CCTAACCCAT
Statistics
Matches: 41, Mismatches: 14, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
21 11 0.27
22 30 0.73
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.25
Consensus pattern (21 bp):
TAAACCTTAAACCATAAACCA
Found at i:74030622 original size:21 final size:21
Alignment explanation
Indices: 74030580--74030623 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
74030570 AACCATAAAC
* *
74030580 CCCTAACCCATGTCCTCCTAA
1 CCCTAACCCATATCCGCCTAA
* *
74030601 CCCTAACCCCTATCCGCTTAA
1 CCCTAACCCATATCCGCCTAA
74030622 CC
1 CC
74030624 TTTAAACCCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.50, G:0.05, T:0.23
Consensus pattern (21 bp):
CCCTAACCCATATCCGCCTAA
Found at i:74030643 original size:22 final size:23
Alignment explanation
Indices: 74030617--74030674 Score: 68
Period size: 21 Copynumber: 2.7 Consensus size: 23
74030607 CCCCTATCCG
74030617 CTTAACCTTTAAACCCA-TAACC
1 CTTAACCTTTAAACCCACTAACC
* *
74030639 CTTAACCTCT--ACCCACTAATC
1 CTTAACCTTTAAACCCACTAACC
*
74030660 CTTAAACTTTAAACC
1 CTTAACCTTTAAACC
74030675 ACAATCCTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
20 5 0.17
21 12 0.41
22 9 0.31
23 3 0.10
ACGTcount: A:0.34, C:0.36, G:0.00, T:0.29
Consensus pattern (23 bp):
CTTAACCTTTAAACCCACTAACC
Found at i:74030675 original size:152 final size:152
Alignment explanation
Indices: 74030507--74030798 Score: 494
Period size: 152 Copynumber: 1.9 Consensus size: 152
74030497 ACCTTTAAAC
* *
74030507 CCTTAAACCATAAACCATAATCCCTAAACTCATAATCCATAAACTTTAAAATATTAACTCATAAA
1 CCTTAAACCATAAACCACAATCCCTAAACCCATAATCCATAAACTTTAAAATATTAACTCATAAA
* *
74030572 CCATAAACCCCTAACCCATGTCCTCCTAACCCTAACCCCTATCCGCTTAACCTTTAAACCCATAA
66 CCATAAACCCCTAACCCATGTCCTCCTAACCCTAACCCCTATCCCCTTAACCGTTAAACCCATAA
*
74030637 CCCTTAACCTCTACCCACTAAT
131 CCCATAACCTCTACCCACTAAT
** * *
74030659 CCTTAAACTTTAAACCACAATCCTTAAACCCATAATCCATAAACTTTCAAATATTAACTCATAAA
1 CCTTAAACCATAAACCACAATCCCTAAACCCATAATCCATAAACTTTAAAATATTAACTCATAAA
*
74030724 CCATAAACCCCTAACCCATGTCCTCCTAACCTTAACCCCTATCCCCTTAACCGTTAAACCCATAA
66 CCATAAACCCCTAACCCATGTCCTCCTAACCCTAACCCCTATCCCCTTAACCGTTAAACCCATAA
74030789 CCCATAACCT
131 CCCATAACCT
74030799 TTAAACCCAT
Statistics
Matches: 130, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
152 130 1.00
ACGTcount: A:0.37, C:0.36, G:0.01, T:0.26
Consensus pattern (152 bp):
CCTTAAACCATAAACCACAATCCCTAAACCCATAATCCATAAACTTTAAAATATTAACTCATAAA
CCATAAACCCCTAACCCATGTCCTCCTAACCCTAACCCCTATCCCCTTAACCGTTAAACCCATAA
CCCATAACCTCTACCCACTAAT
Found at i:74030789 original size:15 final size:14
Alignment explanation
Indices: 74030780--74030826 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
74030770 TTAACCGTTA
*
74030780 AACCCATAACCCAT
1 AACCCTTAACCCAT
*
74030794 AACCTTTAAACCCAT
1 AACCCTT-AACCCAT
*
74030809 AACCCTTAACCCTT
1 AACCCTTAACCCAT
74030823 AACC
1 AACC
74030827 TCTACCCACT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 15 0.54
15 13 0.46
ACGTcount: A:0.38, C:0.40, G:0.00, T:0.21
Consensus pattern (14 bp):
AACCCTTAACCCAT
Found at i:74030796 original size:22 final size:22
Alignment explanation
Indices: 74030771--74030824 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
74030761 CCTATCCCCT
*
74030771 TAACCGTTAAACCCATAACCCA
1 TAACCCTTAAACCCATAACCCA
* *
74030793 TAACCTTTAAACCCATAACCCT
1 TAACCCTTAAACCCATAACCCA
74030815 TAACCCTTAA
1 TAACCCTTAA
74030825 CCTCTACCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.39, C:0.35, G:0.02, T:0.24
Consensus pattern (22 bp):
TAACCCTTAAACCCATAACCCA
Found at i:74030888 original size:15 final size:15
Alignment explanation
Indices: 74030861--74030898 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
74030851 AAACCACAGT
*
74030861 CCTTAAACCCATAATC
1 CCTTAAACACATAA-C
74030877 CC-TAAACACATAAC
1 CCTTAAACACATAAC
74030891 CCTTAAAC
1 CCTTAAAC
74030899 CTTAAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 3 0.15
15 15 0.75
16 2 0.10
ACGTcount: A:0.42, C:0.37, G:0.00, T:0.21
Consensus pattern (15 bp):
CCTTAAACACATAAC
Found at i:74031575 original size:26 final size:26
Alignment explanation
Indices: 74031546--74031598 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
74031536 AAAGTGCCGC
74031546 TAATGCTC-AATCTATAGCGGCGTTTT
1 TAATGCTCGAAT-TATAGCGGCGTTTT
* *
74031572 TAATGCTCGAATTTTAGCGTCGTTTT
1 TAATGCTCGAATTATAGCGGCGTTTT
74031598 T
1 T
74031599 GTTCAAACGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.43
Consensus pattern (26 bp):
TAATGCTCGAATTATAGCGGCGTTTT
Found at i:74033254 original size:5 final size:5
Alignment explanation
Indices: 74033244--74033275 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
74033234 ATCCTATTTT
*
74033244 ATCGA ATCGA ATCAA ATCGA ATCGA ATCGA AT
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA AT
74033276 GAAAAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.22
Consensus pattern (5 bp):
ATCGA
Found at i:74037775 original size:25 final size:27
Alignment explanation
Indices: 74037746--74037807 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 27
74037736 TTTTACTGTA
74037746 TTTATTATTACG-GATATTT-T-AAATT
1 TTTATTATTA-GAGATATTTATAAAATT
* *
74037771 TTTATGATTAGATATATTTATAAAATT
1 TTTATTATTAGAGATATTTATAAAATT
*
74037798 ATTATTATTA
1 TTTATTATTA
74037808 TAATTATTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
24 1 0.03
25 15 0.50
26 1 0.03
27 13 0.43
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.55
Consensus pattern (27 bp):
TTTATTATTAGAGATATTTATAAAATT
Found at i:74037812 original size:15 final size:15
Alignment explanation
Indices: 74037794--74037822 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
74037784 ATATTTATAA
74037794 AATTATTATTATTAT
1 AATTATTATTATTAT
74037809 AATTATTATTATTA
1 AATTATTATTATTA
74037823 GATAGGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:74044046 original size:13 final size:15
Alignment explanation
Indices: 74044013--74044049 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
74044003 CTAGGGACAC
*
74044013 GCCCGTGTCTCATAT
1 GCCCGTGTCTCATAG
74044028 GCCCGTGTCT-AT-G
1 GCCCGTGTCTCATAG
74044041 GCCCGTGTC
1 GCCCGTGTC
74044050 CCTCACATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.43
14 2 0.10
15 10 0.48
ACGTcount: A:0.08, C:0.35, G:0.27, T:0.30
Consensus pattern (15 bp):
GCCCGTGTCTCATAG
Found at i:74047042 original size:70 final size:69
Alignment explanation
Indices: 74046914--74047077 Score: 184
Period size: 69 Copynumber: 2.3 Consensus size: 69
74046904 CATTTGTGTC
* * * * * *
74046914 AGGTTACCCGTCCGGGCTAAACTTTTTATTAACACATCAAATAGTTTGGCTAAAGTTGTAATGTA
1 AGGTTACTCGTACGGGCTAAAC-CTTTATCAACACATCAAATAGTTTGGCCAAAGTTGT-ATATA
*
74046979 CAAGTT
64 CAAGTA
* * * * *
74046985 AGGTTACTTGTACGGGCTAAACCTTTATCGACATATCAGATAGTTTGGCCAAGGTTGTATATACA
1 AGGTTACTCGTACGGGCTAAACCTTTATCAACACATCAAATAGTTTGGCCAAAGTTGTATATACA
*
74047050 TGTA
66 AGTA
*
74047054 AGGTTACTCGTTCGGGCTAAACCT
1 AGGTTACTCGTACGGGCTAAACCT
74047078 ATAAAACGAC
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
69 30 0.38
70 29 0.37
71 19 0.24
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33
Consensus pattern (69 bp):
AGGTTACTCGTACGGGCTAAACCTTTATCAACACATCAAATAGTTTGGCCAAAGTTGTATATACA
AGTA
Found at i:74050191 original size:16 final size:16
Alignment explanation
Indices: 74050166--74050198 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
74050156 TTATTTATAT
*
74050166 TTATTCATATAATAAA
1 TTATTAATATAATAAA
74050182 TTATTAATATAATAAA
1 TTATTAATATAATAAA
74050198 T
1 T
74050199 ATAATTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TTATTAATATAATAAA
Found at i:74050202 original size:22 final size:22
Alignment explanation
Indices: 74050177--74050220 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
74050167 TATTCATATA
74050177 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
74050199 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
74050221 GATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:74050256 original size:13 final size:14
Alignment explanation
Indices: 74050239--74050282 Score: 56
Period size: 13 Copynumber: 3.3 Consensus size: 14
74050229 ATTTCAATTT
*
74050239 TATTTTAATAATAA
1 TATTTTAAAAATAA
74050253 -ATTTTAAAAATAA
1 TATTTTAAAAATAA
*
74050266 TATTTT-TAAATAA
1 TATTTTAAAAATAA
74050279 TATT
1 TATT
74050283 ATTCACATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
13 22 0.81
14 5 0.19
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TATTTTAAAAATAA
Found at i:74050333 original size:15 final size:15
Alignment explanation
Indices: 74050313--74050369 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
74050303 ATTCTATATT
74050313 AATATTTTAATAATA
1 AATATTTTAATAATA
*
74050328 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
74050347 AATATATTAATAATA
1 AATATTTTAATAATA
*
74050362 AATGTTTT
1 AATATTTT
74050370 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:74051053 original size:34 final size:34
Alignment explanation
Indices: 74051015--74051083 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
74051005 AATTTTTTTT
74051015 TAGTTATTATTGTTATCAAAATTTAGTATTTTGG
1 TAGTTATTATTGTTATCAAAATTTAGTATTTTGG
* *
74051049 TAGTTATTATTGTTGTCGAAATTTAGTATTTTGG
1 TAGTTATTATTGTTATCAAAATTTAGTATTTTGG
74051083 T
1 T
74051084 CACTCTTCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.26, C:0.03, G:0.17, T:0.54
Consensus pattern (34 bp):
TAGTTATTATTGTTATCAAAATTTAGTATTTTGG
Found at i:74054192 original size:26 final size:25
Alignment explanation
Indices: 74054155--74054220 Score: 71
Period size: 26 Copynumber: 2.6 Consensus size: 25
74054145 AAATTTTAAT
* *
74054155 AAAAAATTTAAATAT-TAAAAATTAG
1 AAAAAATATAAAAATAT-AAAATTAG
*
74054180 AAAAAATCATAAAAATATAAAATTAT
1 AAAAAAT-ATAAAAATATAAAATTAG
74054206 AAAAATATATAAAAA
1 AAAAA-ATATAAAAA
74054221 ATTGTAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 7 0.20
26 25 0.71
27 3 0.09
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.27
Consensus pattern (25 bp):
AAAAAATATAAAAATATAAAATTAG
Found at i:74054193 original size:10 final size:10
Alignment explanation
Indices: 74054171--74054258 Score: 62
Period size: 10 Copynumber: 9.3 Consensus size: 10
74054161 TTTAAATATT
*
74054171 AAAAATTAGA
1 AAAAATTATA
*
74054181 AAAAATCAT-
1 AAAAATTATA
74054190 AAAAA-TAT-
1 AAAAATTATA
74054198 -AAAATTAT-
1 AAAAATTATA
74054206 AAAAATATATA
1 AAAAAT-TATA
*
74054217 AAAAATTGTA
1 AAAAATTATA
**
74054227 AAATTTTAT-
1 AAAAATTATA
**
74054236 AAAAATCGTA
1 AAAAATTATA
74054246 AAAAATTATA
1 AAAAATTATA
74054256 AAA
1 AAA
74054259 TATAAAATTT
Statistics
Matches: 60, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
7 4 0.07
8 5 0.08
9 15 0.25
10 30 0.50
11 6 0.10
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.28
Consensus pattern (10 bp):
AAAAATTATA
Found at i:74054207 original size:16 final size:16
Alignment explanation
Indices: 74054182--74054214 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
74054172 AAAATTAGAA
74054182 AAAATCATAAAAATAT
1 AAAATCATAAAAATAT
*
74054198 AAAATTATAAAAATAT
1 AAAATCATAAAAATAT
74054214 A
1 A
74054215 TAAAAAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAATCATAAAAATAT
Found at i:74054229 original size:19 final size:19
Alignment explanation
Indices: 74054207--74054258 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
74054197 TAAAATTATA
*
74054207 AAAATATATAAAAAATTGT
1 AAAATATATAAAAAATCGT
*
74054226 AAAAT-TTTATAAAAATCGT
1 AAAATATATA-AAAAATCGT
*
74054245 AAAAAATTATAAAA
1 AAAATA-TATAAAA
74054259 TATAAAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
18 3 0.12
19 17 0.65
20 3 0.12
21 3 0.12
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (19 bp):
AAAATATATAAAAAATCGT
Found at i:74055605 original size:86 final size:88
Alignment explanation
Indices: 74055481--74055680 Score: 332
Period size: 86 Copynumber: 2.3 Consensus size: 88
74055471 TTTTTTGTAC
* * *
74055481 TTGAACTTTCAAAATACATCAAAAAAGCCCTCAAACCTTTTCAAAAAAAGCAATTAAGCCCCTAC
1 TTGAACTTTCAAAATGCATCAAAAAAGCCCTCAAACCTTTTAAAAAAAAACAATTAAGCCCCTAC
74055546 -TTTTTTTTCACTCAATTGGGT-
66 TTTTTTTTTCACTCAATTGGGTA
*
74055567 TTGAACTTTCAAAATGCATCAAAAAAGCCTTCAAACCTTTTAAAAAAAAACAATTAAGCCCCTAC
1 TTGAACTTTCAAAATGCATCAAAAAAGCCCTCAAACCTTTTAAAAAAAAACAATTAAGCCCCTAC
74055632 TTTTTTTTTCACTCAATTGGGTA
66 TTTTTTTTTCACTCAATTGGGTA
*
74055655 CTTAAACTTTCAAAATGCATCAAAAA
1 -TTGAACTTTCAAAATGCATCAAAAA
74055681 GACCATCAAC
Statistics
Matches: 106, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
86 61 0.58
87 21 0.20
89 24 0.23
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (88 bp):
TTGAACTTTCAAAATGCATCAAAAAAGCCCTCAAACCTTTTAAAAAAAAACAATTAAGCCCCTAC
TTTTTTTTTCACTCAATTGGGTA
Found at i:74055823 original size:27 final size:27
Alignment explanation
Indices: 74055803--74055905 Score: 77
Period size: 29 Copynumber: 3.7 Consensus size: 27
74055793 AAATTTTAAT
74055803 AAAAAT-TAAAATATTAAAAATTAGAA
1 AAAAATATAAAATATTAAAAATTAGAA
* *
74055829 AAAAATATAAAATCATAAAAAATATATAA
1 AAAAATATAAAAT-ATTAAAAAT-TAGAA
* * * *
74055858 AAAATTGTGAAATTTTATAAAAATT-GTAA
1 AAAAATAT-AAAATAT-TAAAAATTAG-AA
*
74055887 AAAATTATAAAATA-TAAAA
1 AAAAATATAAAATATTAAAA
74055906 TTTTATAAAG
Statistics
Matches: 60, Mismatches: 11, Indels: 12
0.72 0.13 0.14
Matches are distributed among these distances:
26 11 0.18
27 6 0.10
28 12 0.20
29 21 0.35
30 10 0.17
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (27 bp):
AAAAATATAAAATATTAAAAATTAGAA
Found at i:74055839 original size:19 final size:19
Alignment explanation
Indices: 74055810--74055860 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 19
74055800 AATAAAAATT
*
74055810 AAAATATTAAAAATTAGAAA
1 AAAATA-TAAAAATCAGAAA
*
74055830 AAAATAT-AAAATCATAAA
1 AAAATATAAAAATCAGAAA
74055848 AAATATATAAAAA
1 AAA-ATATAAAAA
74055861 ATTGTGAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 12 0.44
19 5 0.19
20 10 0.37
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (19 bp):
AAAATATAAAAATCAGAAA
Found at i:74055891 original size:10 final size:10
Alignment explanation
Indices: 74055818--74055898 Score: 60
Period size: 10 Copynumber: 8.3 Consensus size: 10
74055808 TTAAAATATT
*
74055818 AAAAATTAGA
1 AAAAATTATA
74055828 AAAAA--ATA
1 AAAAATTATA
* *
74055836 TAAAATCATA
1 AAAAATTATA
74055846 AAAAATATATA
1 AAAAAT-TATA
* *
74055857 AAAAATTGTG
1 AAAAATTATA
**
74055867 AAATTTTAT-
1 AAAAATTATA
*
74055876 AAAAATTGTA
1 AAAAATTATA
74055886 AAAAATTATA
1 AAAAATTATA
74055896 AAA
1 AAA
74055899 TATAAAATTT
Statistics
Matches: 54, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
8 6 0.11
9 6 0.11
10 33 0.61
11 9 0.17
ACGTcount: A:0.65, C:0.01, G:0.05, T:0.28
Consensus pattern (10 bp):
AAAAATTATA
Found at i:74055911 original size:17 final size:18
Alignment explanation
Indices: 74055780--74055914 Score: 60
Period size: 19 Copynumber: 7.3 Consensus size: 18
74055770 CAATAAAAGC
*
74055780 TATAAATATTATTAAATTT
1 TATAAA-ATTATAAAATTT
* *
74055799 TAATAAAAAT-TAAAATAT
1 T-ATAAAATTATAAAATTT
* ***
74055817 TA-AAAATTAGAAAAAAA
1 TATAAAATTATAAAATTT
* *
74055834 TATAAAATCATAAAAAATATA
1 TATAAAAT--TATAAAAT-TT
* * *
74055855 TAAAAAATTGTGAAATTT
1 TATAAAATTATAAAATTT
* **
74055873 TATAAAAATTGTAAAAAAT
1 TAT-AAAATTATAAAATTT
74055892 TATAAAA-TATAAAATTT
1 TATAAAATTATAAAATTT
74055909 TATAAA
1 TATAAA
74055915 GTCGTAAGAA
Statistics
Matches: 87, Mismatches: 22, Indels: 16
0.70 0.18 0.13
Matches are distributed among these distances:
16 5 0.06
17 21 0.24
18 19 0.22
19 23 0.26
20 11 0.13
21 8 0.09
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (18 bp):
TATAAAATTATAAAATTT
Found at i:74059702 original size:47 final size:45
Alignment explanation
Indices: 74059652--74059898 Score: 219
Period size: 46 Copynumber: 5.3 Consensus size: 45
74059642 CATAGACACG
** *
74059652 GTCTTACACTAGCTAAAATCTCAAGTCGATGCCATGTCCCAGACAT
1 GTCTTACACTAGCTATCATCTCAAGCCGATG-CATGTCCCAGACAT
*
74059698 GGTCTTACACT-GACTATCATCTCGTAGCCGATGCATGTCCCAGACAT
1 -GTCTTACACTAG-CTATCATCTC-AAGCCGATGCATGTCCCAGACAT
* * *
74059745 GTCTTACACTGGCT-TACGTCTCGAGGCCGATGCATGTCCCAGACAT
1 GTCTTACACTAGCTAT-CATCTC-AAGCCGATGCATGTCCCAGACAT
* * ** * *
74059791 GTCTTACTCTAACCCTCGTCTCAATGCCAATGCCATGTCCCAGACAT
1 GTCTTACACTAGCTATCATCTCAA-GCCGATG-CATGTCCCAGACAT
* * * ***
74059838 GGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACAT
1 -GTCTTACACTAGCTATCAT-CTCAAGCCGATGCATGTCCCAGACAT
74059885 GTCTTACACTAGCT
1 GTCTTACACTAGCT
74059899 CACACACGAA
Statistics
Matches: 167, Mismatches: 24, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
45 2 0.01
46 75 0.45
47 62 0.37
48 27 0.16
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (45 bp):
GTCTTACACTAGCTATCATCTCAAGCCGATGCATGTCCCAGACAT
Found at i:74059878 original size:94 final size:92
Alignment explanation
Indices: 74059678--74059895 Score: 262
Period size: 94 Copynumber: 2.3 Consensus size: 92
74059668 AATCTCAAGT
* * * *
74059678 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGAC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAACCATCATCTCATAGCCAATGCATGTCCCAGAC
* *
74059743 ATGTCTTACACTGGCTTACGTCTCGAGGC
64 ATGTCTTACACTGGCTTACATATCGAGGC
* * *
74059772 CGATGCATGTCCCAGACATGTCTTACTCTAACCCTCGTCTCA-ATGCCAATGCCATGTCCCAGAC
1 CGATGCATGTCCCAGACATGTCTTACACTAACCATCATCTCATA-GCCAATG-CATGTCCCAGAC
*
74059836 ATGGTCTTACACTGGCTCT-CATAAT-GTGGC
64 AT-GTCTTACACTGGCT-TACAT-ATCGAGGC
74059866 CGATGCATGTCCCAGACATGTCTTACACTA
1 CGATGCATGTCCCAGACATGTCTTACACTA
74059896 GCTCACACAC
Statistics
Matches: 108, Mismatches: 11, Indels: 10
0.84 0.09 0.08
Matches are distributed among these distances:
91 1 0.01
92 23 0.21
93 28 0.26
94 54 0.50
95 2 0.02
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.27
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACTAACCATCATCTCATAGCCAATGCATGTCCCAGACAT
GTCTTACACTGGCTTACATATCGAGGC
Found at i:74060726 original size:13 final size:13
Alignment explanation
Indices: 74060710--74060775 Score: 89
Period size: 13 Copynumber: 5.1 Consensus size: 13
74060700 TTTAAACCAA
74060710 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
74060723 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
*
74060736 ACTTTTTC-ACAGC
1 AC-TTTTCAAAAGC
74060749 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
74060762 ACTTTTTAAAAGC
1 ACTTTTCAAAAGC
74060775 A
1 A
74060776 TTGCCAAACT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
12 5 0.11
13 37 0.80
14 4 0.09
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:74063277 original size:68 final size:69
Alignment explanation
Indices: 74063194--74063352 Score: 212
Period size: 74 Copynumber: 2.2 Consensus size: 69
74063184 TAGAGTTAAG
** * *
74063194 TTCAATTTTAGGTGGTGG-AGAAGTAGAATCACTGCTAGCCATTAAGGACGATGGTGATAGTTTC
1 TTCAATTTTAGGTGGTGGTAGAAGTAGAATCACCACCAGCCATTAAGAACGATGGTGATAGTTTC
74063258 AACA
66 AACA
* *
74063262 TTCAATTTTAAGTGGTGATGGTTTAGAAGTAGAATCGCCACCAGCCATTAAGAACGATGGTGATA
1 TTCAATTTT-A--GGTGGTGG--TAGAAGTAGAATCACCACCAGCCATTAAGAACGATGGTGATA
74063327 GTTTCAACA
61 GTTTCAACA
74063336 TTCAATTTTAGGTGGTG
1 TTCAATTTTAGGTGGTG
74063353 ATGGTTTAGA
Statistics
Matches: 78, Mismatches: 7, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
68 9 0.12
69 1 0.01
71 13 0.17
73 1 0.01
74 54 0.69
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.31
Consensus pattern (69 bp):
TTCAATTTTAGGTGGTGGTAGAAGTAGAATCACCACCAGCCATTAAGAACGATGGTGATAGTTTC
AACA
Found at i:74063312 original size:74 final size:73
Alignment explanation
Indices: 74063212--74063388 Score: 266
Period size: 74 Copynumber: 2.4 Consensus size: 73
74063202 TAGGTGGTGG
** * *
74063212 AGAAGTAGAATCACTGCTAGCCATTAAGGACGATGGTGATAGTTTCAACATTCAATTTTAAGTGG
1 AGAAGTAGAATC-CCACCAGCCATTAAGAACGATGGTGATAGTTTCAACATTCAATTTTAAGTGG
74063277 TGATGGTTT
65 TGATGGTTT
*
74063286 AGAAGTAGAATCGCCACCAGCCATTAAGAACGATGGTGATAGTTTCAACATTCAATTTTAGGTGG
1 AGAAGTAGAATC-CCACCAGCCATTAAGAACGATGGTGATAGTTTCAACATTCAATTTTAAGTGG
74063351 TGATGGTTT
65 TGATGGTTT
* *
74063360 AGAATTAGAAT-CCACCAGCCATTGAGAAC
1 AGAAGTAGAATCCCACCAGCCATTAAGAAC
74063389 AATGAATTTT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
72 17 0.18
74 78 0.82
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (73 bp):
AGAAGTAGAATCCCACCAGCCATTAAGAACGATGGTGATAGTTTCAACATTCAATTTTAAGTGGT
GATGGTTT
Found at i:74065069 original size:25 final size:24
Alignment explanation
Indices: 74065041--74065104 Score: 56
Period size: 28 Copynumber: 2.5 Consensus size: 24
74065031 TATGATTAGA
*
74065041 ATATACTGAAACTACTTTAGGTAGT
1 ATATACTGAAAC-ACTCTAGGTAGT
74065066 ATATTACACTGAAAACACTCTAGGTAGT
1 ATA-T--ACTG-AAACACTCTAGGTAGT
* *
74065094 GTAGACTGAAA
1 ATATACTGAAA
74065105 ATTGTAGTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
24 3 0.09
25 7 0.22
26 1 0.03
28 17 0.53
29 4 0.12
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (24 bp):
ATATACTGAAACACTCTAGGTAGT
Found at i:74076569 original size:24 final size:24
Alignment explanation
Indices: 74076511--74076571 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
74076501 GATGGAGACA
* *
74076511 AAGACAAAGACGAAGGCGAAGGTC
1 AAGATAAAGATGAAGGCGAAGGTC
*
74076535 AAGATGAAGATGAAGGCGAAGGTC
1 AAGATAAAGATGAAGGCGAAGGTC
*
74076559 GAGATAAAGATGA
1 AAGATAAAGATGA
74076572 GTACGAGGAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.46, C:0.10, G:0.34, T:0.10
Consensus pattern (24 bp):
AAGATAAAGATGAAGGCGAAGGTC
Found at i:74078851 original size:28 final size:25
Alignment explanation
Indices: 74078795--74078845 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 25
74078785 CAATCTCTTA
*
74078795 AATTAAAAAAAAGGCCTATTTGATC
1 AATTAAAAAAAAGGCATATTTGATC
74078820 AATTAAAAAAGAGAGGACATATTTGA
1 AATTAAAAAA-A-AGG-CATATTTGA
74078846 CTAATTTTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 10 0.45
26 1 0.05
27 3 0.14
28 8 0.36
ACGTcount: A:0.51, C:0.08, G:0.16, T:0.25
Consensus pattern (25 bp):
AATTAAAAAAAAGGCATATTTGATC
Found at i:74091396 original size:22 final size:21
Alignment explanation
Indices: 74091371--74091421 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
74091361 TAAATGTTTT
*
74091371 TTTAAACATTTAATATTGATTA
1 TTTAAACATTTAAT-TTGAATA
*
74091393 TTTATAAAATTTAATTTGAATA
1 TTTA-AACATTTAATTTGAATA
*
74091415 TATAAAC
1 TTTAAAC
74091422 GATATTTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 2 0.08
22 13 0.54
23 9 0.38
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (21 bp):
TTTAAACATTTAATTTGAATA
Found at i:74091519 original size:25 final size:25
Alignment explanation
Indices: 74091487--74091536 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
74091477 ATTTAAAATA
74091487 AATTTCAATAGGAAAGTAATTACAT
1 AATTTCAATAGGAAAGTAATTACAT
74091512 AATTTCAATAGGAAAGTAATTACAT
1 AATTTCAATAGGAAAGTAATTACAT
74091537 GCTCAATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32
Consensus pattern (25 bp):
AATTTCAATAGGAAAGTAATTACAT
Found at i:74093253 original size:21 final size:21
Alignment explanation
Indices: 74093229--74093270 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
74093219 CTAACGGGAC
*
74093229 AAGTGACATGGCCGGTTAACT
1 AAGTGACATGGCCAGTTAACT
*
74093250 AAGTGACGTGGCCAGTTAACT
1 AAGTGACATGGCCAGTTAACT
74093271 TGCCACGTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (21 bp):
AAGTGACATGGCCAGTTAACT
Found at i:74093365 original size:33 final size:33
Alignment explanation
Indices: 74093322--74093414 Score: 95
Period size: 33 Copynumber: 2.9 Consensus size: 33
74093312 GGGTTTAGGG
*
74093322 AAAAGAAAAGAAAAG-TTGGATTGAGATTAAGGA
1 AAAAAAAAAGAAAAGATT-GATTGAGATTAAGGA
* *
74093355 AAAAAAAAAGAAAGGATTGATTGAGATTAA-TA
1 AAAAAAAAAGAAAAGATTGATTGAGATTAAGGA
* * *
74093387 AGAAGAAAA-AAAA-ATTGATTGGGATTAA
1 AAAAAAAAAGAAAAGATTGATTGAGATTAA
74093415 CATTTTAGGG
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
30 14 0.27
31 3 0.06
32 8 0.15
33 25 0.48
34 2 0.04
ACGTcount: A:0.57, C:0.00, G:0.23, T:0.20
Consensus pattern (33 bp):
AAAAAAAAAGAAAAGATTGATTGAGATTAAGGA
Found at i:74099874 original size:46 final size:46
Alignment explanation
Indices: 74099824--74099999 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
74099814 TGGTTGAGCA
74099824 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
74099870 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
74099915 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
74099963 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74100000 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 65 0.58
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:74099980 original size:93 final size:93
Alignment explanation
Indices: 74099821--74099991 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
74099811 GGATGGTTGA
* *
74099821 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74099886 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
74099914 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74099979 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
74099992 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:74103436 original size:45 final size:45
Alignment explanation
Indices: 74103397--74103555 Score: 141
Period size: 45 Copynumber: 3.7 Consensus size: 45
74103387 TATGTGTTCT
**
74103397 CGTGTAAGACCATGTCTGGGATGTTGGCATCGATCTATGTGGTTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATCTATGTGGTTA
* *
74103442 CGTGTAAGACCATGTCTGGGACATTGGCATC-A--TATTTGATT-
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATCTATGTGGTTA
* * * * * * *
74103483 CGTTTAAGACCCTGTTTAGGATAGTGGCATCGA--TATGTGATTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATCTATGTGGTTA
* * * *
74103526 CATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGTGTAAGACCATGTCTGGGACATTGGCAT
74103556 TGTACAATAT
Statistics
Matches: 93, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
41 25 0.27
42 16 0.17
43 22 0.24
44 1 0.01
45 29 0.31
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (45 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATCGATCTATGTGGTTA
Found at i:74103758 original size:17 final size:18
Alignment explanation
Indices: 74103725--74103760 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
74103715 GACGCAAATT
74103725 ATATATGATGTAAATGAA
1 ATATATGATGTAAATGAA
*
74103743 ATATATG-TGTATATGAA
1 ATATATGATGTAAATGAA
74103760 A
1 A
74103761 AGTACACTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.36
Consensus pattern (18 bp):
ATATATGATGTAAATGAA
Found at i:74108167 original size:12 final size:12
Alignment explanation
Indices: 74108150--74108175 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
74108140 ACTTTAAGAA
74108150 ATAAACAATTGT
1 ATAAACAATTGT
74108162 ATAAACAATTGT
1 ATAAACAATTGT
74108174 AT
1 AT
74108176 GCAAAGTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.35
Consensus pattern (12 bp):
ATAAACAATTGT
Found at i:74112262 original size:68 final size:66
Alignment explanation
Indices: 74112190--74112361 Score: 256
Period size: 68 Copynumber: 2.5 Consensus size: 66
74112180 CATCATGTGT
* *
74112190 ACAAGA-AGGCTACGAGATACTATATAGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCAT
1 ACAAGAGA-GCTACGAGAGA-TAAAT-GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCAT
74112254 GTAG
63 GTAG
74112258 ACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATG
1 ACAAGAGAGCTAC--GAGAGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATG
74112323 TAG
64 TAG
74112326 ACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGT
1 ACAAGAGAGCTAC--GAGAGATAAATGTAGCTAGGT
74112362 TGCATGAGTG
Statistics
Matches: 99, Mismatches: 2, Indels: 6
0.93 0.02 0.06
Matches are distributed among these distances:
68 89 0.90
69 5 0.05
70 5 0.05
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23
Consensus pattern (66 bp):
ACAAGAGAGCTACGAGAGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTA
G
Found at i:74112373 original size:68 final size:68
Alignment explanation
Indices: 74112216--74112361 Score: 292
Period size: 68 Copynumber: 2.1 Consensus size: 68
74112206 ATACTATATA
74112216 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
74112281 AAT
66 AAT
74112284 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
74112349 AAT
66 AAT
74112352 GTAGCTAGGT
1 GTAGCTAGGT
74112362 TGCATGAGTG
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 78 1.00
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.24
Consensus pattern (68 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
AAT
Found at i:74121437 original size:40 final size:39
Alignment explanation
Indices: 74121388--74121595 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 39
74121378 TCTTCGGAAT
* *
74121388 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** *
74121427 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
74121467 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
74121507 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
74121547 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCA-CAATGCCTTCGGGTC
74121587 TTAGCCCGG
1 TTAGCCCGG
74121596 GTATCATTCA
Statistics
Matches: 147, Mismatches: 18, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
39 3 0.02
40 141 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:74121478 original size:80 final size:79
Alignment explanation
Indices: 74121388--74121595 Score: 265
Period size: 80 Copynumber: 2.6 Consensus size: 79
74121378 TCTTCGGAAT
* * * *** *
74121388 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAACCACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
74121452 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* *
74121467 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAGCCCGGATATAACCACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
*
74121532 GAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* * *
74121547 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATATAACCACTAGCA-CAATGCCTTCGGGTCTTAGCCCGG
74121596 GTATCATTCA
Statistics
Matches: 111, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
79 4 0.04
80 105 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
TTAGCCCGGATATAACCACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACA
AATGCCTTCGGGTC
Found at i:74122477 original size:2 final size:2
Alignment explanation
Indices: 74122470--74122511 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
74122460 ATGTGCAAAC
74122470 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74122512 GCTAGAGCCG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74123533 original size:40 final size:40
Alignment explanation
Indices: 74123463--74123592 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
74123453 GGCTGTCACA
74123463 CTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGT
1 CTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGT
* * * *
74123503 CTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGA
1 CTTAGCCCGGATAT-AGCAACTCGCACAAATGCCTTCGGGT
* * *
74123543 CATAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGAT
1 CTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGT
*
74123583 CTTAGTCCGG
1 CTTAGCCCGG
74123593 TTATCATCTG
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 2 0.03
40 71 0.95
41 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGT
Found at i:74125791 original size:43 final size:43
Alignment explanation
Indices: 74125710--74125904 Score: 291
Period size: 43 Copynumber: 4.5 Consensus size: 43
74125700 GCTGGTATTA
* *
74125710 TATTCGGGCCTTCGTGCCTAGCATGCTTTGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
74125753 TATTGGGGCCTTCGTGCCTAGTAGGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
74125796 TATTTGAGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
74125839 TATTCGGGCCTTCATGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
74125882 TATTCGGGCCTTTGAGCCTAGCA
1 TATTCGGGCCTTCGTGCCTAGCA
74125905 TGCTATAATG
Statistics
Matches: 135, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 135 1.00
ACGTcount: A:0.12, C:0.23, G:0.32, T:0.33
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:74127205 original size:39 final size:40
Alignment explanation
Indices: 74127151--74127365 Score: 314
Period size: 39 Copynumber: 5.5 Consensus size: 40
74127141 AAACCAAGTA
* * * *
74127151 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
74127190 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
74127230 CCTTCGGGACTTAG-CCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
74127269 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
74127308 CCTTCGGGACTTAGCCCGGAT-TAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
74127347 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
74127366 TTATCATCCG
Statistics
Matches: 164, Mismatches: 8, Indels: 8
0.91 0.04 0.04
Matches are distributed among these distances:
38 10 0.06
39 102 0.62
40 52 0.32
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:74127228 original size:40 final size:40
Alignment explanation
Indices: 74127184--74127369 Score: 315
Period size: 39 Copynumber: 4.7 Consensus size: 40
74127174 GCTACTTGCT
74127184 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
74127224 CAAATGCCTTCGGGACTTAG-CCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
74127263 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
74127303 -AAATGCCTTCGGGACTTAGCCCGGAT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
74127341 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
74127370 CATCCGAATA
Statistics
Matches: 139, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
38 10 0.07
39 90 0.65
40 39 0.28
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:74127282 original size:79 final size:77
Alignment explanation
Indices: 74127151--74127369 Score: 323
Period size: 79 Copynumber: 2.8 Consensus size: 77
74127141 AAACCAAGTA
* * * *
74127151 CCTTCGGAATTTAGCCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGT
1 CCTTCGGGACTTAGCCGGATATAG-TACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
74127216 AACTCGCACAAATG
65 AACTCGCA-AAATG
* * *
74127230 CCTTCGGGACTTAGCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
74127295 AACTCGCAAAATG
65 AACTCGCAAAATG
74127308 CCTTCGGGACTTAGCCCGGAT-TAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAG-CCGGATATAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
74127370 CATCCGAATA
Statistics
Matches: 128, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
78 58 0.45
79 70 0.55
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (77 bp):
CCTTCGGGACTTAGCCGGATATAGTACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
ACTCGCAAAATG
Found at i:74135268 original size:40 final size:40
Alignment explanation
Indices: 74135224--74135412 Score: 326
Period size: 40 Copynumber: 4.7 Consensus size: 40
74135214 GCTACTTGCT
74135224 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
74135264 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
74135304 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
74135344 CAAATGCCTTCGGGACTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
74135384 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
74135413 CATCCGAATA
Statistics
Matches: 142, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
39 1 0.01
40 140 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:74142268 original size:43 final size:43
Alignment explanation
Indices: 74142207--74142401 Score: 309
Period size: 43 Copynumber: 4.5 Consensus size: 43
74142197 GCTGGTATTA
* *
74142207 TATTCGGGCCTTCGTGCCTAGCATGCTTTGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
74142250 TATTCGGGCCTTCGTGCCTAACAGGTTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
74142293 TATTCGAGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
74142336 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
74142379 TATTCGAGCCTTTGAGCCTAGCA
1 TATTCGGGCCTTCGTGCCTAGCA
74142402 TGCTATAATG
Statistics
Matches: 139, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 139 1.00
ACGTcount: A:0.12, C:0.24, G:0.32, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:74146939 original size:66 final size:67
Alignment explanation
Indices: 74146810--74146939 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
74146800 GGGATGTATC
*
74146810 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
74146875 AGGACA
62 AGGACA
* *
74146881 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
74146940 TTCACCATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
71 21 0.38
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:74151601 original size:20 final size:20
Alignment explanation
Indices: 74151535--74151601 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
74151525 ATTTTGATAA
*
74151535 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
74151555 ACGTGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
74151575 ACATGATATGTATGATATAC
1 ACATGATATGTATGATATGC
74151595 ACATGAT
1 ACATGAT
74151602 GTAATCATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:74151707 original size:24 final size:24
Alignment explanation
Indices: 74151651--74151731 Score: 128
Period size: 24 Copynumber: 3.4 Consensus size: 24
74151641 GAGGAAGTGA
74151651 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
74151675 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
74151698 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
74151722 CAAAGAGGCT
1 AAAAG-GGCT
74151732 AGGCCTCTAG
Statistics
Matches: 53, Mismatches: 2, Indels: 3
0.91 0.03 0.05
Matches are distributed among these distances:
23 23 0.43
24 26 0.49
25 4 0.08
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:74151974 original size:31 final size:31
Alignment explanation
Indices: 74151939--74152002 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
74151929 CGTTTAAAGT
74151939 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
74151970 AAAGGCTTCGGCCTAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
74152001 AA
1 AA
74152003 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:74159239 original size:11 final size:11
Alignment explanation
Indices: 74159203--74159258 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
74159193 CATGGTATGT
74159203 ATGATATGCAC
1 ATGATATGCAC
* *
74159214 ATGACATG--T
1 ATGATATGCAC
74159223 ATGATATGCAC
1 ATGATATGCAC
*
74159234 ATGATATG--T
1 ATGATATGCAC
74159243 ATGATATGCAC
1 ATGATATGCAC
74159254 ATGAT
1 ATGAT
74159259 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:74159258 original size:20 final size:20
Alignment explanation
Indices: 74159192--74159258 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
74159182 ATTTTGATAA
*
74159192 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
74159212 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
74159232 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
74159252 ACATGAT
1 ACATGAT
74159259 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:74159364 original size:24 final size:24
Alignment explanation
Indices: 74159308--74159402 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
74159298 GAGGAAGTGA
74159308 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
74159332 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
74159355 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
74159379 CAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
74159403 ATGAAAGCAG
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:74159377 original size:47 final size:49
Alignment explanation
Indices: 74159308--74159402 Score: 142
Period size: 47 Copynumber: 2.0 Consensus size: 49
74159298 GAGGAAGTGA
*
74159308 AAAAGGGCTTATGCCCCAGTTATT-AAAG-GGCTTATGCC-CCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTCAAAGAGGC-TAGGCCTCCAGTTATT
*
74159355 AAAAGGGCTTTTGCCCCAGTTATTCAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATTCAAAGAGGCTAGGCCTCCAGTTAT
74159403 ATGAAAGCAG
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 23 0.53
48 9 0.21
49 11 0.26
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTATTCAAAGAGGCTAGGCCTCCAGTTATT
Found at i:74160463 original size:13 final size:13
Alignment explanation
Indices: 74160433--74160457 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74160423 TAAGAAAGGT
74160433 ATTTTTGGAAATG
1 ATTTTTGGAAATG
74160446 ATTTTTGGAAAT
1 ATTTTTGGAAAT
74160458 TCTTTTCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
ATTTTTGGAAATG
Found at i:74163494 original size:27 final size:28
Alignment explanation
Indices: 74163427--74163495 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
74163417 AATGAGATTG
*
74163427 GCACTAAGTGTGCGAGTTTAATTGTATA
1 GCACTAAGTGTGCGAGTTGAATTGTATA
* *
74163455 CCACTAAGTGTGCGAGTTGACTAT-TA-A
1 GCACTAAGTGTGCGAGTTGAAT-TGTATA
74163482 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
74163496 GACTTACTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
27 14 0.39
28 21 0.58
29 1 0.03
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTGAATTGTATA
Found at i:74164670 original size:29 final size:29
Alignment explanation
Indices: 74164637--74164739 Score: 163
Period size: 29 Copynumber: 3.6 Consensus size: 29
74164627 TGCGAGAGAT
74164637 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
74164666 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
74164695 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
74164724 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
74164740 CGGCTGATTA
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
28 5 0.07
29 65 0.93
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:74171665 original size:29 final size:29
Alignment explanation
Indices: 74171625--74171756 Score: 203
Period size: 29 Copynumber: 4.6 Consensus size: 29
74171615 GTTGAGAGGT
*
74171625 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
*
74171654 TGGCACTAAGTGTACGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
74171683 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
74171712 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
74171741 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
74171757 CGGCTAATTA
Statistics
Matches: 96, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
28 5 0.05
29 91 0.95
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:74181124 original size:12 final size:12
Alignment explanation
Indices: 74181091--74181147 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
74181081 AGAAAGGTTG
74181091 GAACAAATGCAA
1 GAACAAATGCAA
* *
74181103 -AAGGAGATGCAA
1 GAA-CAAATGCAA
74181115 GAACAAATGCAA
1 GAACAAATGCAA
* *
74181127 GCACAGATGCAA
1 GAACAAATGCAA
*
74181139 GAGCAAATG
1 GAACAAATG
74181148 GCTAAGATCC
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
11 2 0.06
12 30 0.88
13 2 0.06
ACGTcount: A:0.51, C:0.16, G:0.25, T:0.09
Consensus pattern (12 bp):
GAACAAATGCAA
Found at i:74188895 original size:44 final size:44
Alignment explanation
Indices: 74188847--74188954 Score: 103
Period size: 44 Copynumber: 2.5 Consensus size: 44
74188837 AGCCACCAGC
* * * * *
74188847 CTTATCTCCTTGATGTAGCAAGGGAGTAGGCCAAAGATTGTAG-T
1 CTTATCTCCTTAAGGTAGCAA-GAAGCAGACCAAAGATTGTAGAT
**
74188891 CTTATCTTCC-TAAGGTAGCAAGAAGCAGACTGAAGATTGTAGAT
1 CTTATC-TCCTTAAGGTAGCAAGAAGCAGACCAAAGATTGTAGAT
* *
74188935 CTTATCTCCTTCAGATAGCA
1 CTTATCTCCTTAAGGTAGCA
74188955 GTGGCGTAGA
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
43 19 0.37
44 30 0.58
45 3 0.06
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (44 bp):
CTTATCTCCTTAAGGTAGCAAGAAGCAGACCAAAGATTGTAGAT
Found at i:74188908 original size:88 final size:86
Alignment explanation
Indices: 74188758--74189087 Score: 239
Period size: 89 Copynumber: 3.7 Consensus size: 86
74188748 AAATTCAGAT
* * * ** * *
74188758 CTTATCTCCCTGAGATATCAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCCGAGGTAGCA
1 CTTATCTCCTTGAG-TAGCAG-GGAGTAGACCGAAGATTG-TAATCTTATCTTCCCAAGGTAGCA
74188823 GAGGAGCAGATTTTAGCCACCAGC
63 GAGGAGCAGATTTTAGCCACCAGC
* * * *
74188847 CTTATCTCCTTGATGTAGCAAGGGAGTAGGCCAAAGATTGTAGTCTTATCTTCCTAAGGTAGCA-
1 CTTATCTCCTTGA-GTAGC-AGGGAGTAGACCGAAGATTGTAATCTTATCTTCCCAAGGTAGCAG
* * ** ***** *
74188911 AGAAGCAGACTGAAGATTGTAGAT
64 AGGAGCAGATTTTAGCCACCAG-C
* * * ** *
74188935 CTTATCTCCTTCAGATAGCAGTGGCGTAGATCGAAGACGGTGAATCTTATCTTCCCGAGGTAGCA
1 CTTATCTCCTTGAG-TAGCAG-GGAGTAGACCGAAGATTGT-AATCTTATCTTCCCAAGGTAGCA
*
74189000 GGGGAGCAGATTTTAGCCACCAGC
63 GAGGAGCAGATTTTAGCCACCAGC
* * * * * * *
74189024 CTTATTTCCCTGAGGTAGCGAGGGAGCAGACTGAAGATTGTAATCTTATCATACTAAGGTAGCA
1 CTTATCTCCTTGA-GTAGC-AGGGAGTAGACCGAAGATTGTAATCTTATCTTCCCAAGGTAGCA
74189088 ATAGAGCAGA
Statistics
Matches: 177, Mismatches: 55, Indels: 19
0.71 0.22 0.08
Matches are distributed among these distances:
87 16 0.09
88 68 0.38
89 75 0.42
90 18 0.10
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (86 bp):
CTTATCTCCTTGAGTAGCAGGGAGTAGACCGAAGATTGTAATCTTATCTTCCCAAGGTAGCAGAG
GAGCAGATTTTAGCCACCAGC
Found at i:74189063 original size:177 final size:177
Alignment explanation
Indices: 74188748--74189144 Score: 553
Period size: 177 Copynumber: 2.2 Consensus size: 177
74188738 CAACATTGGT
* *
74188748 AAATTCAGATCTTATCTCCCTGAGATATCAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCC
1 AAATTGAGATCTTATCTCCCTGAGATAGCAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCC
* * * *
74188813 CGAGGTAGCAGAGGAGCAGATTTTAGCCACCAGCCTTATCTCCTTGATGTAGCAAGGGAGTAGGC
66 CGAGGTAGCAGAGGAGCAGATTTTAGCCACCAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGAC
* * * *
74188878 CAAAGATTGTAGTCTTATCTTCCTAAGGTAGCAAGA-AGCAGACTGA
131 CAAAGATTGTAATCTTATCATACTAAGGTAGCAAGAGAGCAGACTAA
* * * * *
74188924 AGATTGTAGATCTTATCTCCTTCAGATAGCAGTGGCGTAGATCGAAGACGGTGAATCTTATCTTC
1 AAATTG-AGATCTTATCTCCCTGAGATAGCAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTC
* * *
74188989 CCGAGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATTTCCCTGAGGTAGCGAGGGAGCAGA
65 CCGAGGTAGCAGAGGAGCAGATTTTAGCCACCAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGA
** *
74189054 CTGAAGATTGTAATCTTATCATACTAAGGTAGCAATAGAGCAGACTAA
130 CCAAAGATTGTAATCTTATCATACTAAGGTAGCAAGAGAGCAGACTAA
* * *
74189102 AAATTGAAAGTCTTATCTCCCTGAGATAGCAGTGAAGCAGATC
1 AAATTGAGA-TCTTATCTCCCTGAGATAGCAGTGGAGTAGATC
74189145 AAAGCCACCA
Statistics
Matches: 190, Mismatches: 28, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
176 4 0.02
177 144 0.76
178 42 0.22
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (177 bp):
AAATTGAGATCTTATCTCCCTGAGATAGCAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCC
CGAGGTAGCAGAGGAGCAGATTTTAGCCACCAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGAC
CAAAGATTGTAATCTTATCATACTAAGGTAGCAAGAGAGCAGACTAA
Found at i:74189814 original size:14 final size:14
Alignment explanation
Indices: 74189795--74189834 Score: 57
Period size: 13 Copynumber: 2.9 Consensus size: 14
74189785 CCTGGGCCCA
74189795 CACAAAAATAAAAC
1 CACAAAAATAAAAC
74189809 CAC-AAAATAAAAC
1 CACAAAAATAAAAC
74189822 CA-AACAAATAAAA
1 CACAA-AAATAAAA
74189835 AACCAAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.72, C:0.20, G:0.00, T:0.07
Consensus pattern (14 bp):
CACAAAAATAAAAC
Found at i:74191272 original size:15 final size:15
Alignment explanation
Indices: 74191252--74191293 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
74191242 TCTTATACAT
74191252 TATTATTTTTATATA
1 TATTATTTTTATATA
*
74191267 TATTATTTATAT-TA
1 TATTATTTTTATATA
* *
74191281 AACTATTTTTATA
1 TATTATTTTTATA
74191294 ATTTATGTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (15 bp):
TATTATTTTTATATA
Found at i:74194985 original size:48 final size:48
Alignment explanation
Indices: 74194929--74195160 Score: 213
Period size: 48 Copynumber: 4.8 Consensus size: 48
74194919 TTATGAGGGC
* *
74194929 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGATAG-
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGATGATAGT
** * * * *
74194976 CTAGTGTAAGACCATGTCCGGGACATGGCATCAGCCTCGAGATATGAAAG-
1 C-AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAG--ATGATAGT
* * * *
74195026 CTAGTGTAAGACCATGTTTAGGACATGGCATCGGCCTCAAT-ATATGAGAGT
1 C-AGTGTAAGACCATGTCTAGGACATGGCATCGG---CATTGAGATGATAGT
* *
74195077 CAGTGTAAGACCATGTCTAGGACATGGCATCGACTTTGATG-TG-TGAGT
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGA-GATGAT-AGT
*
74195125 CAGTGTAAGACCATGTCTAGGACATGGCATTGGCAT
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCAT
74195161 CTTACCCTAT
Statistics
Matches: 151, Mismatches: 24, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
47 3 0.02
48 74 0.49
50 71 0.47
51 1 0.01
52 1 0.01
53 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGATGATAGT
Found at i:74195041 original size:50 final size:50
Alignment explanation
Indices: 74194930--74195154 Score: 230
Period size: 50 Copynumber: 4.6 Consensus size: 50
74194920 TATGAGGGCC
* * * * *
74194930 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG--ACGATAGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATATGAAAGCT
** *
74194978 AGTGTAAGACCATGTCCGGGACATGGCATCAGCCTCGAGATATGAAAGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATATGAAAGCT
* * * *
74195028 AGTGTAAGACCATGTTTAGGACATGGCATCGGCCTCAATATATGAGAG-T
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATATGAAAGCT
* * * *
74195077 CAGTGTAAGACCATGTCTAGGACATGGCATCGACTTTGATG-TGTG--AG-T
1 -AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGA-GATATGAAAGCT
74195125 CAGTGTAAGACCATGTCTAGGACATGGCAT
1 -AGTGTAAGACCATGTCTAGGACATGGCAT
74195155 TGGCATCTTA
Statistics
Matches: 153, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
48 68 0.44
49 1 0.01
50 84 0.55
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATATGAAAGCT
Found at i:74199566 original size:2 final size:2
Alignment explanation
Indices: 74199559--74199594 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
74199549 GGCGCTTAGC
74199559 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74199595 CAATATTCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74200991 original size:50 final size:49
Alignment explanation
Indices: 74200930--74201129 Score: 289
Period size: 50 Copynumber: 4.1 Consensus size: 49
74200920 CATCAAAGTT
* * * * *
74200930 GATGCCATGTCCCAAACAAGGTCTTACACTGACACTCGTATATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-ACTCTCATATCTCGAGGCC
*
74200980 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTTGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTA-CTCTCATATCTCGAGGCC
74201030 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-T-T-GAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTA-CTCTCATATCTCGAGGCC
74201077 GATGCCATGTCCCAGACATGGTCTTACACTAACTCTCATATCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-ACTCTCATATCTCGAGGCC
74201127 GAT
1 GAT
74201130 CTCATATCTC
Statistics
Matches: 139, Mismatches: 6, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
47 43 0.31
48 3 0.02
49 3 0.02
50 90 0.65
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTACTCTCATATCTCGAGGCC
Found at i:74201095 original size:97 final size:98
Alignment explanation
Indices: 74200879--74201129 Score: 312
Period size: 97 Copynumber: 2.6 Consensus size: 98
74200869 AGGGTAAGGT
* * * * * * * **
74200879 GCCGACGCCATGTCCCTGACATGGTCTTACACTGGCTCACACATC-AAAGTTGATGCCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTGAGGCCGATGCCATGTCCC
74200943 AAACAAGGTCTTACACTGACACTCGTATATCGAG
66 AAACAAGGTCTTACACTGACACTCG-ATATCGAG
74200977 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTTGAGGCCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-TGAGGCCGATGCCATGTCC
* * * *
74201042 CAGACATGGTCTTACACT-AGCTCTC-AT-TTGAG
65 CAAACAAGGTCTTACACTGA-CACTCGATATCGAG
*
74201074 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCATATCTCGAGGCCGAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCT-GAGGCCGAT
74201130 CTCATATCTC
Statistics
Matches: 135, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
96 1 0.01
97 57 0.42
98 42 0.31
99 1 0.01
100 34 0.25
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (98 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTGAGGCCGATGCCATGTCCC
AAACAAGGTCTTACACTGACACTCGATATCGAG
Found at i:74201689 original size:21 final size:21
Alignment explanation
Indices: 74201652--74201710 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
74201642 CAAGCTACTG
*
74201652 GGGC-ACACGCCCATGTGGAA
1 GGGCAACACGCCCGTGTGGAA
* * *
74201672 TGGCGACACTCCCGTGTGGAA
1 GGGCAACACGCCCGTGTGGAA
74201693 GGGCAACACGCCCGTGTG
1 GGGCAACACGCCCGTGTG
74201711 TCTTCTTAAC
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 3 0.09
21 29 0.91
ACGTcount: A:0.20, C:0.31, G:0.36, T:0.14
Consensus pattern (21 bp):
GGGCAACACGCCCGTGTGGAA
Found at i:74209029 original size:144 final size:144
Alignment explanation
Indices: 74208764--74209093 Score: 423
Period size: 144 Copynumber: 2.3 Consensus size: 144
74208754 GGTGAATTGT
* * * * * *
74208764 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCTAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGCCGATGCCATGTCCTAGA
* * * *
74208829 CATGGTCTTACACTAGCTCTCGTCTCATTACCGATGCCACGTCCCAGACACAGTCTTACACTGGC
66 CATGGTCTTACACTAGCTCTCGACACATTACCAATGCCACGTCCCAAACACAGTCTTACACTGGC
*
74208894 TCTCATGAT-GTGGC
131 TCTCAT-ATCATGGC
* * *
74208908 CGATGCCATGTCCCAGACATGGCCTTACACTAGCACACATATCAACGTCGATGCCATGTCCTAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGCCGATGCCATGTCCTAGA
* * * **
74208973 CATGGTCTTACACTGGCTCTC-ACAACA-TAGCCAATGCCATGTTCCAAACATGGTCTTACACTG
66 CATGGTCTTACACTAGCTCTCGAC-ACATTA-CCAATGCCACGTCCCAAACACAGTCTTACACTG
*
74209036 GCTCTCATATCATGGT
129 GCTCTCATATCATGGC
*
74209052 CAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATAT
74209094 TACCCAAATG
Statistics
Matches: 160, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
143 5 0.03
144 155 0.97
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (144 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGCCGATGCCATGTCCTAGA
CATGGTCTTACACTAGCTCTCGACACATTACCAATGCCACGTCCCAAACACAGTCTTACACTGGC
TCTCATATCATGGC
Found at i:74209093 original size:48 final size:48
Alignment explanation
Indices: 74208764--74209085 Score: 342
Period size: 48 Copynumber: 6.7 Consensus size: 48
74208754 GGTGAATTGT
* * * *
74208764 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGA-GGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC-ATGGC
* * * * **
74208812 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCGTCTCATTAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGC
* ** *
74208860 CGATGCCACGTCCCAGACACAGTCTTACACTGGCTCTCATGAT-GTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCATGGC
* * * * ** *
74208908 CGATGCCATGTCCCAGACATGGCCTTACACTAGCACACATATCAACGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGC
* * * *
74208956 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCACAACATAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGC
* * * *
74209004 CAATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCATGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGC
*
74209052 CAATGCCATGTCCCAGACATGGTCTTACACTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC
74209086 ACACATATTA
Statistics
Matches: 221, Mismatches: 50, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
47 3 0.01
48 217 0.98
49 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGC
Found at i:74216345 original size:30 final size:30
Alignment explanation
Indices: 74216311--74216370 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
74216301 CTTTAATATG
*
74216311 AACTTTGGAAAAATTACATTTTTACCCCTA
1 AACTTTGGAAAAATTACACTTTTACCCCTA
* * * *
74216341 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTACCCCTA
74216371 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTACCCCTA
Found at i:74224746 original size:14 final size:14
Alignment explanation
Indices: 74224719--74224753 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
74224709 ATCTTACCCC
74224719 ATATACAAATACAG
1 ATATACAAATACAG
74224733 ATAT-CAAATAACAG
1 ATATACAAAT-ACAG
74224747 ATATACA
1 ATATACA
74224754 TAAATAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 5 0.26
14 12 0.63
15 2 0.11
ACGTcount: A:0.57, C:0.14, G:0.06, T:0.23
Consensus pattern (14 bp):
ATATACAAATACAG
Found at i:74227484 original size:25 final size:25
Alignment explanation
Indices: 74227433--74227484 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
74227423 AATATATAAC
* * *
74227433 TTTTAAAATATTAAATTTCAAATTA
1 TTTTAAAATATTAAAATTAAAAATA
*
74227458 TTTTAAAATTTTAAAATTAAAAATA
1 TTTTAAAATATTAAAATTAAAAATA
74227483 TT
1 TT
74227485 GTCATAACTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (25 bp):
TTTTAAAATATTAAAATTAAAAATA
Found at i:74228388 original size:31 final size:31
Alignment explanation
Indices: 74228342--74228400 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
74228332 AACCCTTCCT
* *
74228342 GCATTAAATCGAACCAAAAACAGAAAATATA
1 GCATGAAATCCAACCAAAAACAGAAAATATA
*
74228373 GCATGAAATCCAACCAAAAACAGCAAAT
1 GCATGAAATCCAACCAAAAACAGAAAAT
74228401 GTCGCATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.56, C:0.20, G:0.10, T:0.14
Consensus pattern (31 bp):
GCATGAAATCCAACCAAAAACAGAAAATATA
Found at i:74228711 original size:21 final size:21
Alignment explanation
Indices: 74228660--74228711 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
74228650 TCTACTGCCA
* * *
74228660 TCGCTGCTGCCTCTGCCTCTC
1 TCGCTGCTGCCGCTACCTCCC
* *
74228681 TTGCTACTGCCGCTACCTCCC
1 TCGCTGCTGCCGCTACCTCCC
74228702 TCGCTGCTGC
1 TCGCTGCTGC
74228712 TGCTGGCTCT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.04, C:0.46, G:0.19, T:0.31
Consensus pattern (21 bp):
TCGCTGCTGCCGCTACCTCCC
Found at i:74229156 original size:13 final size:14
Alignment explanation
Indices: 74229130--74229158 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
74229120 ACTAACGACG
74229130 AATTAAACCATTAT
1 AATTAAACCATTAT
74229144 AATTAAA-CATTAT
1 AATTAAACCATTAT
74229157 AA
1 AA
74229159 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:74233155 original size:49 final size:49
Alignment explanation
Indices: 74233089--74233283 Score: 221
Period size: 49 Copynumber: 3.9 Consensus size: 49
74233079 GCTATTGTGA
* * * **
74233089 GGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * *
74233138 GGTCGCATGTGTAGTACTAAGTGCAGGCTAGTATGCGTACCTA-ATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC-AGATAA-TT
* ** * *
74233188 CGATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
74233238 GGTCCCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
74233284 GCTTCAGGTA
Statistics
Matches: 119, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
49 76 0.64
50 5 0.04
51 38 0.32
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:74233273 original size:100 final size:100
Alignment explanation
Indices: 74233095--74233278 Score: 314
Period size: 100 Copynumber: 1.8 Consensus size: 100
74233085 GTGAGGTCAC
* ** *
74233095 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCCCATGTGTAGTACTAAGT
*
74233160 GCAGGCTAGTATGCGTACCTAATAACTTCGATCAT
66 GCAGGCTACTATGCGTACCTAATAACTTCGATCAT
*
74233195 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCCCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCCCATGTGTAGTACTAAGT
74233260 GCAGGCTACTATGCGTACC
66 GCAGGCTACTATGCGTACC
74233279 AGATAGCTTC
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 78 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.30
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCCCATGTGTAGTACTAAGT
GCAGGCTACTATGCGTACCTAATAACTTCGATCAT
Found at i:74236052 original size:16 final size:15
Alignment explanation
Indices: 74236014--74236052 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
74236004 TAGATTTTCG
* *
74236014 TATCATGGATTTTTT
1 TATCTTGGATTTCTT
74236029 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
74236044 TATTCTTGG
1 TA-TCTTGG
74236053 CTTCTTTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.15, C:0.10, G:0.15, T:0.59
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:74238856 original size:49 final size:50
Alignment explanation
Indices: 74238789--74239035 Score: 282
Period size: 49 Copynumber: 5.0 Consensus size: 50
74238779 AGCTATTGTG
* *
74238789 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * *
74238839 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT
* * * * *
74238889 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * *
74238939 AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * *
74238989 -GTTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATAG
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
74239036 CTTCGGCTAT
Statistics
Matches: 163, Mismatches: 32, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
49 78 0.48
50 47 0.29
51 38 0.23
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
Found at i:74238926 original size:28 final size:28
Alignment explanation
Indices: 74238894--74238977 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
74238884 AACTTCGATC
74238894 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
74238922 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
*
74238944 ACGTGTGTAGTACTAAGTGCAAGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
74238972 ACGTGT
1 ACGTGT
74238978 ACCGGATAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 16
0.64 0.11 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.20
23 2 0.05
24 3 0.07
25 5 0.12
26 3 0.07
27 2 0.05
28 14 0.34
29 2 0.05
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:74242932 original size:9 final size:9
Alignment explanation
Indices: 74242918--74243055 Score: 79
Period size: 9 Copynumber: 15.3 Consensus size: 9
74242908 TAATTCTAAT
74242918 TAAGTTATG
1 TAAGTTATG
*
74242927 TAAGTTTTG
1 TAAGTTATG
* * *
74242936 ATATGATATA
1 -TAAGTTATG
*
74242946 T-ATTTATG
1 TAAGTTATG
74242954 T-A-TTATG
1 TAAGTTATG
74242961 TAAGTTATG
1 TAAGTTATG
*
74242970 TAAATTATG
1 TAAGTTATG
*
74242979 TAAGTTATC
1 TAAGTTATG
* *
74242988 CAAATTATG
1 TAAGTTATG
*
74242997 TAAATTATG
1 TAAGTTATG
*
74243006 TAAGATATGATA
1 TAAG-T-T-ATG
*
74243018 TATATTTATG
1 TA-AGTTATG
74243028 T-A-TTATG
1 TAAGTTATG
74243035 TAAGTTATG
1 TAAGTTATG
*
74243044 TAAATTATG
1 TAAGTTATG
74243053 TAA
1 TAA
74243056 AATATGATAT
Statistics
Matches: 99, Mismatches: 21, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
7 12 0.12
8 8 0.08
9 62 0.63
10 9 0.09
11 2 0.02
12 5 0.05
13 1 0.01
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:74242978 original size:18 final size:18
Alignment explanation
Indices: 74242955--74243055 Score: 107
Period size: 18 Copynumber: 5.5 Consensus size: 18
74242945 ATATTTATGT
74242955 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
**
74242973 ATTATGTAAGTTATCCAA
1 ATTATGTAAGTTATGTAA
*
74242991 ATTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
* *
74243009 GATATGATATATATTTATGT--
1 -AT-T-ATGTA-AGTTATGTAA
74243029 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
74243047 ATTATGTAA
1 ATTATGTAA
74243056 AATATGATAT
Statistics
Matches: 68, Mismatches: 9, Indels: 12
0.76 0.10 0.13
Matches are distributed among these distances:
16 7 0.10
17 4 0.06
18 41 0.60
19 4 0.06
20 1 0.01
21 4 0.06
22 7 0.10
ACGTcount: A:0.40, C:0.02, G:0.14, T:0.45
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:74243056 original size:9 final size:9
Alignment explanation
Indices: 74242955--74243061 Score: 94
Period size: 9 Copynumber: 11.7 Consensus size: 9
74242945 ATATTTATGT
74242955 ATTATGTAA
1 ATTATGTAA
*
74242964 GTTATGTAA
1 ATTATGTAA
74242973 ATTATGTAA
1 ATTATGTAA
* **
74242982 GTTATCCAA
1 ATTATGTAA
74242991 ATTATGTAA
1 ATTATGTAA
74243000 ATTATGTAA
1 ATTATGTAA
74243009 GA-TATGATATA
1 -ATTATG-TA-A
74243020 TATTTATGT--
1 -A-TTATGTAA
74243029 ATTATGTAA
1 ATTATGTAA
*
74243038 GTTATGTAA
1 ATTATGTAA
74243047 ATTATGTAA
1 ATTATGTAA
*
74243056 AATATG
1 ATTATG
74243062 ATATATATTT
Statistics
Matches: 79, Mismatches: 12, Indels: 14
0.75 0.11 0.13
Matches are distributed among these distances:
7 6 0.08
8 1 0.01
9 62 0.78
10 3 0.04
11 2 0.03
12 1 0.01
13 4 0.05
ACGTcount: A:0.40, C:0.02, G:0.14, T:0.44
Consensus pattern (9 bp):
ATTATGTAA
Found at i:74243356 original size:43 final size:42
Alignment explanation
Indices: 74243308--74243455 Score: 120
Period size: 43 Copynumber: 3.3 Consensus size: 42
74243298 AGGTAATTTA
74243308 AAAATAAAATAAAAGTAGACAAAAGTTTTTTCCTGATTAAAAT
1 AAAATAAAATAAAAGTAGACAAAAGTTTTTT-CTGATTAAAAT
* * ** * * *
74243351 AAAATAAAATGAAACTTTA-AATACAATTTACTT-TAATTAGACAATTT
1 AAAATAAAATAAAAGTAGACAA-A-AGTTT-TTTCTGATTA-A-AA--T
*
74243398 AAAAATAAAATAAAAGTAGACAAAGGTTTTTTCGTGATTAAAAT
1 -AAAATAAAATAAAAGTAGACAAAAGTTTTTTC-TGATTAAAAT
74243442 AAAATAAAATAAAA
1 AAAATAAAATAAAA
74243456 TAAAATAAAA
Statistics
Matches: 79, Mismatches: 15, Indels: 22
0.68 0.13 0.19
Matches are distributed among these distances:
42 2 0.03
43 35 0.44
44 6 0.08
45 4 0.05
46 4 0.05
47 5 0.06
48 21 0.27
49 2 0.03
ACGTcount: A:0.55, C:0.06, G:0.08, T:0.30
Consensus pattern (42 bp):
AAAATAAAATAAAAGTAGACAAAAGTTTTTTCTGATTAAAAT
Found at i:74243397 original size:91 final size:90
Alignment explanation
Indices: 74243239--74243790 Score: 681
Period size: 91 Copynumber: 6.0 Consensus size: 90
74243229 AATTATTTAC
* * * *
74243239 AAGTTTTTTCGTGATTAAAATAAAATAAAACAAAACTTTAAATATAATTTAATTTATTTAGGTAA
1 AAGTTTTTTCGTGATTAAAATAAAATAAAA-TAAACTTTAAATACAATTTACTTTAATTAGGTAA
74243304 TTTAAAAATAAAATAAAAGTAGACAA
65 TTTAAAAATAAAATAAAAGTAGACAA
* **
74243330 AAGTTTTTTCCTGATTAAAATAAAATAAAATGAAACTTTAAATACAATTTACTTTAATTAGACAA
1 AAGTTTTTTCGTGATTAAAATAAAATAAAAT-AAACTTTAAATACAATTTACTTTAATTAGGTAA
74243395 TTTAAAAATAAAATAAAAGTAGACAA
65 TTTAAAAATAAAATAAAAGTAGACAA
* *
74243421 AGGTTTTTTCGTGATTAAAATAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTT
1 AAGTTTTTTCGTG------AT----TAAAATAAAATAAAAT-AAACTTTAAATACAATTTACTTT
74243486 AATTAGGTAATTTAAAAATAAAATAAAAGTAGAC--
55 AATTAGGTAATTTAAAAATAAAATAAAAGTAGACAA
* *
74243520 AAG-TTTTTCCTGATTAAAATAAAATAAAATAAAAATTTAAATACAATTTACTTTAATTAGGTAA
1 AAGTTTTTTCGTGATTAAAATAAAATAAAAT-AAACTTTAAATACAATTTACTTTAATTAGGTAA
74243584 TTTAAAAATAAAATAAAAGTAGAC--
65 TTTAAAAATAAAATAAAAGTAGACAA
* *
74243608 AAGTTTTTTCCTGATTAAAATAAAATAAAATATAATAAAATTTAAATACAATTTACTTTAATTAG
1 AAGTTTTTTCGTGATTAAAATAAAAT---A-A-AATAAACTTTAAATACAATTTACTTTAATTAG
* *
74243673 GTAATTTAAAAATAAAATAAAATTTGACAA
61 GTAATTTAAAAATAAAATAAAAGTAGACAA
**** * *
74243703 AAAAAATTTCGTGATTAAAATGAAAT---A-AAACTTTAAATACAATTTAATTTAATTAGGTAAT
1 AAGTTTTTTCGTGATTAAAATAAAATAAAATAAACTTTAAATACAATTTACTTTAATTAGGTAAT
74243764 TTAAAAATAAAATAAAAGTAGACAA
66 TTAAAAATAAAATAAAAGTAGACAA
74243789 AA
1 AA
74243791 TATTTTAAAC
Statistics
Matches: 413, Mismatches: 29, Indels: 43
0.85 0.06 0.09
Matches are distributed among these distances:
86 57 0.14
87 1 0.00
88 75 0.18
89 22 0.05
91 94 0.23
92 3 0.01
93 56 0.14
94 3 0.01
95 20 0.05
97 2 0.00
98 8 0.02
99 2 0.00
101 70 0.17
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.34
Consensus pattern (90 bp):
AAGTTTTTTCGTGATTAAAATAAAATAAAATAAACTTTAAATACAATTTACTTTAATTAGGTAAT
TTAAAAATAAAATAAAAGTAGACAA
Found at i:74243446 original size:5 final size:5
Alignment explanation
Indices: 74243436--74243465 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
74243426 TTTTCGTGAT
74243436 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
74243466 CTTTAAATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:74243602 original size:189 final size:189
Alignment explanation
Indices: 74243254--74243789 Score: 783
Period size: 189 Copynumber: 2.9 Consensus size: 189
74243244 TTTTCGTGAT
* * *
74243254 TAAAATAAAATAAAACAAAACTTTAAATATAATTTAATTTATTTAGGTAATTTAAAAATAAAATA
1 TAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATA
*
74243319 AAAGTAGACAAAAGTTTTTTCCTGATTAAAATAAAATAAAATGAAACTTTAAATACAATTTACTT
66 AAAGTAGAC-AAAG-TTTTTCCTGATTAAAATAAAATAAAATAAAACTTTAAATACAATTTACTT
** *
74243384 TAATTAGACAATTTAAAAATAAAATAAAAGTAGACAAAGGTTTTTTCGTGATTAAAATAAAA
129 TAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAA-GTTTTTTCCTGATTAAAATAAAA
74243446 TAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATA
1 TAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATA
*
74243511 AAAGTAGAC-AAGTTTTTCCTGATTAAAATAAAATAAAATAAAAATTTAAATACAATTTACTTTA
66 AAAGTAGACAAAGTTTTTCCTGATTAAAATAAAATAAAATAAAACTTTAAATACAATTTACTTTA
74243575 ATTAGGTAATTTAAAAATAAAATAAAAGTAGAC-AAGTTTTTTCCTGATTAAAATAAAA
131 ATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAGTTTTTTCCTGATTAAAATAAAA
*
74243633 TAAAAT---AT--AATAAAA-TTTAAATACAATTTACTTTAATTAGGTAATTTAAAAATAAAATA
1 TAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATA
* * *** * * *
74243692 AAATTTGACAAAAAAAATTTCGTGA-T----TAAAATGAAATAAAACTTTAAATACAATTTAATT
66 AAAGTAGAC--AAAGTTTTTCCTGATTAAAATAAAATAAAATAAAACTTTAAATACAATTTACTT
74243752 TAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAA
129 TAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAA
74243790 ATATTTTAAA
Statistics
Matches: 322, Mismatches: 18, Indels: 20
0.89 0.05 0.06
Matches are distributed among these distances:
179 66 0.20
180 2 0.01
181 50 0.16
182 7 0.02
183 1 0.00
184 11 0.03
187 28 0.09
188 2 0.01
189 81 0.25
190 3 0.01
192 71 0.22
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (189 bp):
TAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATA
AAAGTAGACAAAGTTTTTCCTGATTAAAATAAAATAAAATAAAACTTTAAATACAATTTACTTTA
ATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAGTTTTTTCCTGATTAAAATAAAA
Found at i:74243921 original size:99 final size:99
Alignment explanation
Indices: 74243753--74244036 Score: 461
Period size: 99 Copynumber: 2.9 Consensus size: 99
74243743 AATTTAATTT
* *
74243753 AATTAGGTAATTTAAAAATAAAATAAAAGTA--GACAA--AAT-ATTTTAAACATTGTTAAGTCT
1 AATTAGGTAATTTAAAAATAAAATAAAA-TATTTA-AATTAATGATATTAAAC-TTGTTAAGTCT
74243813 TTCTTTTAATTTGCATTTATTAATTTGTTAATTTAAA
63 TTCTTTTAATTTGCATTTATTAATTTGTTAATTTAAA
74243850 AATTAGGTAATTTAAAAATAAAATAAAATATTTAAATTAATGATATTAAACTTGTTAAGTCTTTC
1 AATTAGGTAATTTAAAAATAAAATAAAATATTTAAATTAATGATATTAAACTTGTTAAGTCTTTC
74243915 TTTTAATTTGCATTTATTAATTTGTTAATTTAAA
66 TTTTAATTTGCATTTATTAATTTGTTAATTTAAA
* * *
74243949 AATTAGGTAATATAAAAATAAAATAAAATATTTACATTAATGATATTAAACTTGCTAAGTCTTTC
1 AATTAGGTAATTTAAAAATAAAATAAAATATTTAAATTAATGATATTAAACTTGTTAAGTCTTTC
74244014 TTTTAATTTGCATTTATTAATTT
66 TTTTAATTTGCATTTATTAATTT
74244037 AAGTAAACAT
Statistics
Matches: 177, Mismatches: 5, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
96 2 0.01
97 30 0.17
98 1 0.01
99 136 0.77
100 8 0.05
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (99 bp):
AATTAGGTAATTTAAAAATAAAATAAAATATTTAAATTAATGATATTAAACTTGTTAAGTCTTTC
TTTTAATTTGCATTTATTAATTTGTTAATTTAAA
Found at i:74244714 original size:8 final size:8
Alignment explanation
Indices: 74244701--74244747 Score: 51
Period size: 8 Copynumber: 6.0 Consensus size: 8
74244691 AAAAAAATTC
74244701 CACTATTA
1 CACTATTA
74244709 CACTA-TA
1 CACTATTA
* *
74244716 CGCAATTA
1 CACTATTA
*
74244724 CACTATTC
1 CACTATTA
*
74244732 CACTATTC
1 CACTATTA
74244740 CACTATTA
1 CACTATTA
74244748 TCATAATCAC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
7 5 0.16
8 27 0.84
ACGTcount: A:0.34, C:0.30, G:0.02, T:0.34
Consensus pattern (8 bp):
CACTATTA
Found at i:74246999 original size:158 final size:157
Alignment explanation
Indices: 74246636--74246981 Score: 405
Period size: 158 Copynumber: 2.2 Consensus size: 157
74246626 TAAGCACTAA
* * * *
74246636 TGTTTTTTGCGGCGTTTATTTAAAAAACACCGCTAATCCCTATATATTCAACTAAAACGACGATG
1 TGTTTTTTGCGGCGTTTTTTTAAAAAACGCCGCTAATCCCTATATTTTCAACTAAAACGACGACG
* *
74246701 TGTACAGTAGACTTTAATTATTTTGCGGCGTTTTTAAAAGCGCCACTAATACCCTCATATACTAA
66 TGTACAGTACACTTTAATTATGTTGCGGCGTTTTTAAAAGCGCCACTAATACCCTCATATACTAA
* *
74246766 AACGGCATCGTTTTCTTTAAACTAAAC
131 AACGACACCGTTTTCTTTAAACTAAAC
* * * * *
74246793 TGTCTTTTGTGGCG-TTTTCTATAAAAACGCCGCTAATCCCCTATATTTTCAACTAAAATGATGA
1 TGTTTTTTGCGGCGTTTTTTTA-AAAAACGCCGCTAAT-CCCTATATTTTCAACTAAAACGACGA
* * * *
74246857 CGCT-TCCAGTACACTTTACTTCTGTTGCGGCGTTTTTCAAAA-CGCCACTAATACTCT-ATCCA
64 CG-TGTACAGTACACTTTAATTATGTTGCGGCGTTTTT-AAAAGCGCCACTAATACCCTCAT--A
* * * *
74246919 -ACTAAAACGACGCCGTTTTCTTTCAGCTATAC
125 TACTAAAACGACACCGTTTTCTTTAAACTAAAC
74246951 TGTTTTTTTGCGGCGTTTTTTTAAAAAACGC
1 TG-TTTTTTGCGGCGTTTTTTTAAAAAACGC
74246982 AACTGATCTC
Statistics
Matches: 157, Mismatches: 24, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
156 5 0.03
157 28 0.18
158 94 0.60
159 24 0.15
160 6 0.04
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (157 bp):
TGTTTTTTGCGGCGTTTTTTTAAAAAACGCCGCTAATCCCTATATTTTCAACTAAAACGACGACG
TGTACAGTACACTTTAATTATGTTGCGGCGTTTTTAAAAGCGCCACTAATACCCTCATATACTAA
AACGACACCGTTTTCTTTAAACTAAAC
Found at i:74247915 original size:21 final size:21
Alignment explanation
Indices: 74247868--74247917 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
74247858 TAATTAAACT
74247868 CTAACCCCTAAACCATAAGCCC
1 CTAA-CCCTAAACCATAAGCCC
* *
74247890 TTAACCCTAAACCCCTAA-CCC
1 CTAACCCTAAA-CCATAAGCCC
74247911 CTAACCC
1 CTAACCC
74247918 GACCCTAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.34, C:0.48, G:0.02, T:0.16
Consensus pattern (21 bp):
CTAACCCTAAACCATAAGCCC
Found at i:74248058 original size:14 final size:14
Alignment explanation
Indices: 74248029--74248067 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
74248019 TCCTACACCT
* *
74248029 TAAACCCTGAACCA
1 TAAACCCTAAATCA
*
74248043 TATACCCTAAATCA
1 TAAACCCTAAATCA
74248057 TAAACCCTAAA
1 TAAACCCTAAA
74248068 CTATAATGAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.31, G:0.03, T:0.21
Consensus pattern (14 bp):
TAAACCCTAAATCA
Found at i:74248634 original size:40 final size:38
Alignment explanation
Indices: 74248590--74248677 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 38
74248580 AACATATAGC
* *
74248590 GGCGTTTCCTTAT-AAGCGCTGTTAATGCTCGTTTTTTAGT
1 GGCGTTT--TTATGAAGCGCCGCTAATGCTC-TTTTTTAGT
*
74248630 GGCGTTTTTGTGGAAGCGCCGCTAATGCTCTTTTTTAGT
1 GGCGTTTTTAT-GAAGCGCCGCTAATGCTCTTTTTTAGT
*
74248669 GACGTTTTT
1 GGCGTTTTT
74248678 TGTTAAAACA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
38 3 0.07
39 17 0.40
40 22 0.52
ACGTcount: A:0.14, C:0.17, G:0.25, T:0.44
Consensus pattern (38 bp):
GGCGTTTTTATGAAGCGCCGCTAATGCTCTTTTTTAGT
Found at i:74248680 original size:40 final size:40
Alignment explanation
Indices: 74248603--74248677 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 40
74248593 GTTTCCTTAT
* * *
74248603 AAGCGCTGTTAATGCTCGTTTTTTAGTGGCGTTTTTGTGG
1 AAGCGCCGCTAATGCTCGTTTTTTAGTGACGTTTTTGTGG
74248643 AAGCGCCGCTAATGCTC-TTTTTTAGTGACGTTTTT
1 AAGCGCCGCTAATGCTCGTTTTTTAGTGACGTTTTT
74248678 TGTTAAAACA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
39 17 0.53
40 15 0.47
ACGTcount: A:0.15, C:0.16, G:0.25, T:0.44
Consensus pattern (40 bp):
AAGCGCCGCTAATGCTCGTTTTTTAGTGACGTTTTTGTGG
Found at i:74248692 original size:40 final size:40
Alignment explanation
Indices: 74248612--74248694 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 40
74248602 TAAGCGCTGT
* * * *
74248612 TAATGCTCGTTTTTTAGTGGCGTTTTTGTGGAAGCGCCGC
1 TAATGCTCGTTTTTTAGTGACGTTTTTGTGAAAACACCGC
*
74248652 TAATGCTC-TTTTTTAGTGACGTTTTTTGTTAAAACACCGC
1 TAATGCTCGTTTTTTAGTGACG-TTTTTGTGAAAACACCGC
74248692 TAA
1 TAA
74248695 AAATACTGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 12 0.32
40 25 0.68
ACGTcount: A:0.19, C:0.17, G:0.22, T:0.42
Consensus pattern (40 bp):
TAATGCTCGTTTTTTAGTGACGTTTTTGTGAAAACACCGC
Found at i:74251054 original size:24 final size:23
Alignment explanation
Indices: 74251017--74251063 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
74251007 ATTATATTAA
* *
74251017 AATTAAAATTAAAATATAAATAT
1 AATTAAAATAAAAAAATAAATAT
*
74251040 AATTAAAAATAAAAAAATATATAT
1 AATT-AAAATAAAAAAATAAATAT
74251064 TTATTATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (23 bp):
AATTAAAATAAAAAAATAAATAT
Found at i:74251879 original size:58 final size:58
Alignment explanation
Indices: 74251810--74251931 Score: 217
Period size: 58 Copynumber: 2.1 Consensus size: 58
74251800 AAACACTACG
** *
74251810 TTTTTCCATCTGTTCTTCATTGGAAACCAAGCTATCTTTTCTTACACCTTATTGGGGT
1 TTTTTCCATCTGTTCTTCATTCAAAACCAAACTATCTTTTCTTACACCTTATTGGGGT
74251868 TTTTTCCATCTGTTCTTCATTCAAAACCAAACTATCTTTTCTTACACCTTATTGGGGT
1 TTTTTCCATCTGTTCTTCATTCAAAACCAAACTATCTTTTCTTACACCTTATTGGGGT
74251926 TTTTTC
1 TTTTTC
74251932 AGACCTTCAT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 61 1.00
ACGTcount: A:0.20, C:0.23, G:0.11, T:0.47
Consensus pattern (58 bp):
TTTTTCCATCTGTTCTTCATTCAAAACCAAACTATCTTTTCTTACACCTTATTGGGGT
Found at i:74257830 original size:3 final size:3
Alignment explanation
Indices: 74257774--74257810 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
74257764 ATAATGTCTC
*
74257774 ATA A-A ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
74257811 GCAAAAAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:74258478 original size:24 final size:25
Alignment explanation
Indices: 74258432--74258480 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
74258422 TTGCCCGGGC
*
74258432 CCCAACAAGCCCAAAACTAAACCTA
1 CCCAACAAGCCCAAAACCAAACCTA
*
74258457 CCCAAC-AGCCCAAAACCCAACCTA
1 CCCAACAAGCCCAAAACCAAACCTA
74258481 TCCTAACCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 16 0.73
25 6 0.27
ACGTcount: A:0.45, C:0.45, G:0.04, T:0.06
Consensus pattern (25 bp):
CCCAACAAGCCCAAAACCAAACCTA
Found at i:74259592 original size:3 final size:3
Alignment explanation
Indices: 74259584--74260102 Score: 262
Period size: 3 Copynumber: 173.0 Consensus size: 3
74259574 ATCTAAGATG
* *
74259584 TTA TTA TTA CTC TTA TT- TTCA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
74259629 TTA TTA TTA TTA TTA TTA TTA TTA GTA -TA TTA CTG TTT TTA TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*** * * * *
74259676 TTA CCC TTA GTA ATA -TA TTA TTA TTA TTA TT- TT- TTT TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
74259721 TTA TTA GTGA TCTA TTA TTA TTC TTA TTA GTGTA TTG TTA TTTC TTA
1 TTA TTA -TTA T-TA TTA TTA TTA TTA TTA -T-TA TTA TTA -TTA TTA
* * *
74259768 TT- TT- TTCA -TA TTA TTG TTG TTA TTA GTA TATA TTA TTA TTA TT-
1 TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
* * * * * * * *
74259811 TCCTA TTA TTA TTA TTA CTA CTA ATA TCA CTA TTA TCA TTT TTT TTA
1 T--TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
74259858 CTA TTA TTA TTT TTT TTA CTGTA TAA TATA TTA TTA -TA CCTTT TTA
1 TTA TTA TTA TTA TTA TTA -T-TA TTA T-TA TTA TTA TTA --TTA TTA
* * * *
74259904 TTA TTA TTA CTA TT- GTA TTA TTA CTA TTA TTA TTA TTA -TA TT- TTC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
74259949 TT- TT- TTA TTA CTA TTA CTA -TA TTA TTT TTA TTT TTA TTT TCTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * * * * *
74259992 TTA TTA TTA TCA TTA TTA TTA ATA CTA ATA TTA ATA TTC TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
74260040 CTT- TTA TTA TTA TCA TTA GTA TTA TTA TTT TTA CTA CTA TTA TTA
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
74260085 TTA TCA ATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA
74260103 CTACTATCGT
Statistics
Matches: 394, Mismatches: 91, Indels: 62
0.72 0.17 0.11
Matches are distributed among these distances:
2 31 0.08
3 335 0.85
4 22 0.06
5 6 0.02
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:74259761 original size:23 final size:22
Alignment explanation
Indices: 74259716--74259769 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
74259706 TTTTTTTTAC
*
74259716 TATTATTATTAGTGATCTATTA
1 TATTCTTATTAGTGATCTATTA
*
74259738 TTATTCTTATTAGTGTAT-TGTTA
1 -TATTCTTATTAGTG-ATCTATTA
74259761 T-TTCTTATT
1 TATTCTTATT
74259770 TTTTCATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 8 0.29
22 1 0.04
23 17 0.61
24 2 0.07
ACGTcount: A:0.24, C:0.06, G:0.09, T:0.61
Consensus pattern (22 bp):
TATTCTTATTAGTGATCTATTA
Found at i:74259924 original size:14 final size:15
Alignment explanation
Indices: 74259905--74259945 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
74259895 ACCTTTTTAT
74259905 TATTATTACTATT-G
1 TATTATTACTATTAG
*
74259919 TATTATTACTATTAT
1 TATTATTACTATTAG
74259934 TATTATTA-TATT
1 TATTATTACTATT
74259946 TTCTTTTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 17 0.68
15 8 0.32
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAG
Found at i:74265141 original size:15 final size:15
Alignment explanation
Indices: 74265099--74265141 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
74265089 GCTATATTGC
*
74265099 AAAAAAAAAAAAACT
1 AAAAACAAAAAAACT
*
74265114 AAAAACTAAAAAACT
1 AAAAACAAAAAAACT
74265129 AAAAACAAAAAAA
1 AAAAACAAAAAAA
74265142 AAAGAAAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.84, C:0.09, G:0.00, T:0.07
Consensus pattern (15 bp):
AAAAACAAAAAAACT
Found at i:74265164 original size:6 final size:6
Alignment explanation
Indices: 74265101--74265166 Score: 53
Period size: 6 Copynumber: 10.3 Consensus size: 6
74265091 TATATTGCAA
* * *
74265101 AAAAAA AAAAAC TAAAAAC TAAAAAAC TAAAAAC AAAAA- AAAAAG AAAAAGA
1 AAAAAC AAAAAC -AAAAAC --AAAAAC -AAAAAC AAAAAC AAAAAC AAAAA-C
74265153 AAAAAC AAAAAC AA
1 AAAAAC AAAAAC AA
74265167 CAAATTAAGG
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
5 5 0.10
6 23 0.45
7 17 0.33
8 6 0.12
ACGTcount: A:0.83, C:0.09, G:0.03, T:0.05
Consensus pattern (6 bp):
AAAAAC
Found at i:74266793 original size:64 final size:64
Alignment explanation
Indices: 74266715--74266839 Score: 169
Period size: 64 Copynumber: 2.0 Consensus size: 64
74266705 TCATTCATGA
* * * *
74266715 CACATCTAGTTAGGAGTATTGGATTTATTTCGATCATAGCGTCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTGGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
* * * * *
74266779 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATCGTATCGTAATTATTTGGCATAAG
1 CACATCTAGTTAGGAGCATTGGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAG
74266840 TAGATACATG
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
64 52 1.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.38
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTGGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:74267051 original size:86 final size:86
Alignment explanation
Indices: 74266898--74267686 Score: 954
Period size: 86 Copynumber: 9.1 Consensus size: 86
74266888 TTACTAGCCT
* * * * *
74266898 TAGGGTAACAGGCTGAATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGTAGATCGAAGACGGT
1 TAGGGTAACAGGCCGAATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGT
*
74266963 GAGCCTTAACCCCTTAAGCAG
66 GAGCCTTAACCCCCTAAGCAG
* * * *
74266984 CAGGGTAACAGGTCGAATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATTGAAGGCAGT
1 TAGGGTAACAGGCCGAATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGT
*
74267049 GAGCCTTAACCCCCTAAACAG
66 GAGCCTTAACCCCCTAAGCAG
* *
74267070 TAGGGTAATAGGCCGAATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGT
1 TAGGGTAACAGGCCGAATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGT
* * *
74267135 AAGCCTTTACCTCCTAAGCAG
66 GAGCCTTAACCCCCTAAGCAG
* * *
74267156 TAGGGTAATAGGCCGAATTACAGATCTTGTCTCCCTAAGCAGCAGTGGAGCAGATCGAAGACGGT
1 TAGGGTAACAGGCCGAATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGT
* * *
74267221 GAGCCTTAAACCCTTAAGTAG
66 GAGCCTTAACCCCCTAAGCAG
* * * * *
74267242 TAGGGTAATAGGCCGAATTACATATATTGTCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGT
1 TAGGGTAACAGGCCGAATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGT
74267307 GAGCCTTAACCCCCTAAGCAG
66 GAGCCTTAACCCCCTAAGCAG
*
74267328 TAGGGTAACAGGCCGAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACAGT
1 TAGGGTAACAGGCCGAATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGT
* * *
74267393 AAGCCTTGACCCCCTAAGTAG
66 GAGCCTTAACCCCCTAAGCAG
* ** * * * * **
74267414 TAAGGTAACAGGCTAAAAATTACAGATCTTATCACCCTAAGCAGTAG-GGAAACAGATCAAATTC
1 TAGGGTAACAGGC--CGAATTACAGATCTTGTCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGAC
* *
74267478 ACT-AGCCTTAACCCCCTAAGCAA
63 AGTGAGCCTTAACCCCCTAAGCAG
* * ** * *
74267501 TAGGATAACAGGCAGAAGATTACAGATCTCATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGATA
1 TAGGGTAACAGGCCG-A-ATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACA
* * *
74267566 GTAAGCCTTGATCCCCTAAGCAG
64 GTGAGCCTTAACCCCCTAAGCAG
* ** * * *
74267589 TAGGGTAACAGGCAGAAAATTACAGATCTCATCTCCCTAAGCAGCAGTGGAGCAGATCAAAGAGA
1 TAGGGTAACAGGCCG--AATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACA
*
74267654 GCT-AGCCTTAACCCCTTAAGCAG
64 G-TGAGCCTTAACCCCCTAAGCAG
*
74267677 TAAGGTAACA
1 TAGGGTAACA
74267687 TGCTAGAAAT
Statistics
Matches: 614, Mismatches: 80, Indels: 16
0.86 0.11 0.02
Matches are distributed among these distances:
85 1 0.00
86 399 0.65
87 68 0.11
88 143 0.23
89 3 0.00
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.21
Consensus pattern (86 bp):
TAGGGTAACAGGCCGAATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGT
GAGCCTTAACCCCCTAAGCAG
Found at i:74267542 original size:44 final size:43
Alignment explanation
Indices: 74267491--74267632 Score: 130
Period size: 44 Copynumber: 3.2 Consensus size: 43
74267481 AGCCTTAACC
*
74267491 CCCTAAGCAATAGGATAACAGGCAGAAGATTACAGATCTCATCT
1 CCCTAAGCAGTAGG-TAACAGGCAGAAGATTACAGATCTCATCT
* * * * *
74267535 CCCTAAGCAGTAGCGGAGCAGATC-GAAGATAGTA-AG-CCTTGATC-
1 CCCTAAGCAGTAG-GTAACAG-GCAGAAGAT--TACAGATC-TCATCT
*
74267579 CCCTAAGCAGTAGGGTAACAGGCAGAAAATTACAGATCTCATCT
1 CCCTAAGCAGTA-GGTAACAGGCAGAAGATTACAGATCTCATCT
74267623 CCCTAAGCAG
1 CCCTAAGCAG
74267633 CAGTGGAGCA
Statistics
Matches: 76, Mismatches: 12, Indels: 20
0.70 0.11 0.19
Matches are distributed among these distances:
42 2 0.03
43 7 0.09
44 56 0.74
45 9 0.12
46 2 0.03
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.19
Consensus pattern (43 bp):
CCCTAAGCAGTAGGTAACAGGCAGAAGATTACAGATCTCATCT
Done.