Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 241 of 410
Found at i:74540332 original size:22 final size:22
Alignment explanation
Indices: 74540304--74540353 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
74540294 CAATTCACCC
74540304 TTATGAATTGAAAGGTCTCTCT
1 TTATGAATTGAAAGGTCTCTCT
74540326 TTATGAATTGAAAGGTCTCTCT
1 TTATGAATTGAAAGGTCTCTCT
74540348 TT-TGAA
1 TTATGAA
74540354 GATTGTTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 4 0.14
22 24 0.86
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.42
Consensus pattern (22 bp):
TTATGAATTGAAAGGTCTCTCT
Found at i:74541614 original size:2 final size:2
Alignment explanation
Indices: 74541607--74541634 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
74541597 TTATTTCATA
74541607 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74541635 TCTTTTTGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74547226 original size:6 final size:6
Alignment explanation
Indices: 74547212--74547242 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
74547202 TTAAGCCCAT
*
74547212 TACAAA TACAGA TACAGA TACAGA TACAGA T
1 TACAGA TACAGA TACAGA TACAGA TACAGA T
74547243 GTACAAACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.52, C:0.16, G:0.13, T:0.19
Consensus pattern (6 bp):
TACAGA
Found at i:74554911 original size:18 final size:19
Alignment explanation
Indices: 74554886--74554932 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
74554876 ATTTTAGTTA
74554886 ATTA-TTTTATTA-TTTCT
1 ATTATTTTTATTATTTTCT
74554903 ATTATTTTT-TTATTTTCT
1 ATTATTTTTATTATTTTCT
*
74554921 TTTATTTTTATT
1 ATTATTTTTATT
74554933 GGAATTATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 7 0.27
18 17 0.65
19 2 0.08
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.77
Consensus pattern (19 bp):
ATTATTTTTATTATTTTCT
Found at i:74554929 original size:17 final size:16
Alignment explanation
Indices: 74554886--74554929 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
74554876 ATTTTAGTTA
74554886 ATTATTTTATTATTTCT
1 ATTATTTT-TTATTTCT
74554903 ATTATTTTTTTATTTTCT
1 ATTA-TTTTTTA-TTTCT
*
74554921 TTTATTTTT
1 ATTATTTTT
74554930 ATTGGAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (16 bp):
ATTATTTTTTATTTCT
Found at i:74559569 original size:40 final size:40
Alignment explanation
Indices: 74559458--74559678 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
74559448 AACCCAAGTA
* *
74559458 CCTTCGGGAATTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
74559497 CCTTCGGGTCTTAGCCC-GATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
74559536 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
74559576 CATTCGGGACATAGCCCGGATATAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
74559616 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
74559656 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
74559679 CATCCGAATA
Statistics
Matches: 168, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 47 0.28
40 121 0.72
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:74567455 original size:40 final size:39
Alignment explanation
Indices: 74567410--74567538 Score: 170
Period size: 40 Copynumber: 3.3 Consensus size: 39
74567400 CGGAATACAA
74567410 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
74567450 CCGGATAGAACGACTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
* * * *
74567489 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
74567529 CCGGATATAA
1 CCGGATATAA
74567539 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 37 0.48
40 40 0.52
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:74567745 original size:16 final size:16
Alignment explanation
Indices: 74567724--74567757 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
74567714 ACACACATAA
74567724 ATCATAATCATTACAC
1 ATCATAATCATTACAC
* *
74567740 ATCATATTCATTTCAC
1 ATCATAATCATTACAC
74567756 AT
1 AT
74567758 AATTCAAGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (16 bp):
ATCATAATCATTACAC
Found at i:74572578 original size:28 final size:29
Alignment explanation
Indices: 74572546--74572602 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
74572536 TGTAAAGGTT
*
74572546 TTTGACAAAAATGTCAATT-AGGGATTAA
1 TTTGACAAAAATGTAAATTGAGGGATTAA
* * *
74572574 TTTGAGAAAAGTGTAAATTGAGGGGTTAA
1 TTTGACAAAAATGTAAATTGAGGGATTAA
74572603 ATTGTGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 16 0.67
29 8 0.33
ACGTcount: A:0.40, C:0.04, G:0.25, T:0.32
Consensus pattern (29 bp):
TTTGACAAAAATGTAAATTGAGGGATTAA
Found at i:74572611 original size:29 final size:28
Alignment explanation
Indices: 74572547--74572611 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 28
74572537 GTAAAGGTTT
* * *
74572547 TTGACAAAAATGTCAATTAGGGATTAAT
1 TTGAGAAAAATGTAAATTAGGGATTAAA
* *
74572575 TTGAGAAAAGTGTAAATTGAGGGGTTAAA
1 TTGAGAAAAATGTAAATT-AGGGATTAAA
*
74572604 TTGTGAAA
1 TTGAGAAA
74572612 TAAATGAAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.31
Consensus pattern (28 bp):
TTGAGAAAAATGTAAATTAGGGATTAAA
Found at i:74575556 original size:13 final size:15
Alignment explanation
Indices: 74575527--74575558 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
74575517 GAGAAAAGCT
74575527 GATTCAGAGGCAAGA
1 GATTCAGAGGCAAGA
74575542 GATTC-GAGG-AAGA
1 GATTCAGAGGCAAGA
74575555 GATT
1 GATT
74575559 GATGAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 4 0.24
15 5 0.29
ACGTcount: A:0.38, C:0.09, G:0.34, T:0.19
Consensus pattern (15 bp):
GATTCAGAGGCAAGA
Found at i:74580102 original size:28 final size:29
Alignment explanation
Indices: 74580071--74580127 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
74580061 TAAAGAGATT
* *
74580071 TTTGACAAAAATGTCAATT-AGGGATTAA
1 TTTGACAAAAATGTAAATTAAAGGATTAA
* *
74580099 TTTGAGAAAAGTGTAAATTAAAGGATTAA
1 TTTGACAAAAATGTAAATTAAAGGATTAA
74580128 ATTGTGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 16 0.67
29 8 0.33
ACGTcount: A:0.46, C:0.04, G:0.19, T:0.32
Consensus pattern (29 bp):
TTTGACAAAAATGTAAATTAAAGGATTAA
Found at i:74582307 original size:14 final size:15
Alignment explanation
Indices: 74582281--74582309 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
74582271 ATTTTCTGTG
74582281 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
74582296 TTTATT-TGTGTGAA
1 TTTATTATGTGTGAA
74582310 GTTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:74587725 original size:18 final size:18
Alignment explanation
Indices: 74587702--74587753 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
74587692 ATGCAGCACA
*
74587702 TTGCATGGAATGTATGGT
1 TTGCATGGAATGTATGGG
* *
74587720 TTGCATGAAATGCATGGG
1 TTGCATGGAATGTATGGG
74587738 TTGCATGGAATGTATG
1 TTGCATGGAATGTATG
74587754 AAATGCATGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.25, C:0.08, G:0.33, T:0.35
Consensus pattern (18 bp):
TTGCATGGAATGTATGGG
Found at i:74587745 original size:27 final size:27
Alignment explanation
Indices: 74587721--74587780 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
74587711 ATGTATGGTT
74587721 TGCATGAAATGCATGGGTTGCATGGAA
1 TGCATGAAATGCATGGGTTGCATGGAA
* **
74587748 TGTATGAAATGCATGTTTTGCATGGAA
1 TGCATGAAATGCATGGGTTGCATGGAA
*
74587775 CGCATG
1 TGCATG
74587781 GAGTGCACGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.28, C:0.12, G:0.30, T:0.30
Consensus pattern (27 bp):
TGCATGAAATGCATGGGTTGCATGGAA
Found at i:74600036 original size:18 final size:18
Alignment explanation
Indices: 74599996--74600038 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
74599986 CTCACTTTTC
*
74599996 TAATCATCCCTCATCCCT
1 TAATCATCCCTCATCCAT
*
74600014 CAATCATCCCTCA-CTCAT
1 TAATCATCCCTCATC-CAT
74600032 TAATCAT
1 TAATCAT
74600039 TCTCTCCTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 1 0.05
18 20 0.95
ACGTcount: A:0.28, C:0.40, G:0.00, T:0.33
Consensus pattern (18 bp):
TAATCATCCCTCATCCAT
Found at i:74606198 original size:46 final size:46
Alignment explanation
Indices: 74606103--74606311 Score: 167
Period size: 46 Copynumber: 4.5 Consensus size: 46
74606093 GTGTCGATGC
* * ***
74606103 CATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTA-GATGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCG-AGGCCAATG
*
74606148 CATGTCCCAGACATGTCTTACACTGGCT-TACATCTTGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGGCCAATG
* ** * *
74606194 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGATTCCGATTC
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCC-AATG
* * * **
74606241 CATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGCCAATG
* *
74606288 CATGTCCCAAACATATCTTACACT
1 CATGTCCCAGACATGTCTTACACT
74606312 AGCACACAAG
Statistics
Matches: 133, Mismatches: 23, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
44 10 0.08
45 16 0.12
46 55 0.41
47 31 0.23
48 20 0.15
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCAATG
Found at i:74606289 original size:94 final size:91
Alignment explanation
Indices: 74606052--74606319 Score: 258
Period size: 94 Copynumber: 2.9 Consensus size: 91
74606042 GAGGCCAGCG
* * * *
74606052 CCATGTCCCAGACATGGTCTAACACTAGCTCTCACATATCCGTGTCGATGCCATGTCCCAGACAT
1 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT--GTGGCGATG-CATGTCCCAGACAT
74606117 GGTCTTACACT-G-ACACATCTCGTAGATGAT
62 -GTCTTACACTAGCACACATCTCGTAGAT-AT
* ** * *
74606147 GCATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTTGAGGCCAATGCATGTCCCAGACATGT
1 CCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGTGG-CGATGCATGTCCCAGACATGT
* * *
74606210 CTTACACTAGCTCTCATCTCGATTCCGAT-T
64 CTTACACTAGCACACATCTCG--T-AGATAT
* * *
74606240 CCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCAAACATATC
1 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGC-GATGCATGTCCCAGACATGTC
74606305 TTACACTAGCACACA
65 TTACACTAGCACACA
74606320 AGTAACCCGA
Statistics
Matches: 141, Mismatches: 22, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
90 10 0.07
91 17 0.12
92 12 0.09
93 17 0.12
94 67 0.48
95 18 0.13
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (91 bp):
CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCGATGCATGTCCCAGACATGTCT
TACACTAGCACACATCTCGTAGATAT
Found at i:74606295 original size:140 final size:140
Alignment explanation
Indices: 74606053--74606311 Score: 330
Period size: 140 Copynumber: 1.8 Consensus size: 140
74606043 AGGCCAGCGC
*
74606053 CATGTCCCAGACATGGTCTAACACTAGCTCTCACATATCCGTGTCGATGCCATGTCCCAGACATG
1 CATGTCCCAGACATGGTCTAACACTAGCTCT-ACATATCCGTGTCGATGCCATGTCCCAAACATG
* *
74606118 GTCTTACACTGACACATCTCGTAGATGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCT
65 GTCTTACACTGACACATCTCGTAGATGATGCATGTCCCAAACATATCTTACACTGGCTTACATCT
74606183 TGAGGCCAATG
130 TGAGGCCAATG
* * *
74606194 CATGTCCCAGACAT-GTCTTACACTAGCTCT-CATCT-CGAT-TCCGATTCCATGTCCCAAACAT
1 CATGTCCCAGACATGGTCTAACACTAGCTCTACATATCCG-TGT-CGATGCCATGTCCCAAACAT
* * * * *
74606255 GGTCTTACACTGGCTC-TCATAATGTGGCTGATGCATGTCCCAAACATATCTTACACT
64 GGTCTTACACTGACACATC-T--CGTAGATGATGCATGTCCCAAACATATCTTACACT
74606312 AGCACACAAG
Statistics
Matches: 102, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
137 5 0.05
138 38 0.37
140 45 0.44
141 14 0.14
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.29
Consensus pattern (140 bp):
CATGTCCCAGACATGGTCTAACACTAGCTCTACATATCCGTGTCGATGCCATGTCCCAAACATGG
TCTTACACTGACACATCTCGTAGATGATGCATGTCCCAAACATATCTTACACTGGCTTACATCTT
GAGGCCAATG
Found at i:74607972 original size:17 final size:18
Alignment explanation
Indices: 74607930--74607978 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
74607920 AGTTGAAAAG
74607930 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
74607949 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
74607966 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
74607979 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:74608867 original size:40 final size:40
Alignment explanation
Indices: 74608801--74608967 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
74608791 AAATTGAATG
* * *
74608801 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
74608840 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
74608880 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
74608920 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
74608960 ATATCCGG
1 ATATCCGG
74608968 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:74615974 original size:17 final size:18
Alignment explanation
Indices: 74615932--74615980 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
74615922 AGTTGAAAAG
74615932 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
74615951 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
74615968 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
74615981 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:74616868 original size:40 final size:40
Alignment explanation
Indices: 74616802--74616968 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
74616792 AAATTGAATG
* * *
74616802 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
74616841 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
74616881 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
74616921 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
74616961 ATATCCGG
1 ATATCCGG
74616969 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:74619332 original size:29 final size:29
Alignment explanation
Indices: 74619272--74619372 Score: 84
Period size: 29 Copynumber: 3.6 Consensus size: 29
74619262 GTGACGAGAT
* *
74619272 TGGCACTGAGTGT--GAGCTTGTAAT-GTA
1 TGGCACTAAGTGTGCGAGCTTG-AATCATA
* *
74619299 TGGCACTAAGTGTGCGAGTTTGGA-CTATA
1 TGGCACTAAGTGTGCGAGCTTGAATC-ATA
* * * *
74619328 TGGCACTATGTGGGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAATCATA
74619357 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
74619373 TGATTGAGTA
Statistics
Matches: 57, Mismatches: 12, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
27 12 0.21
28 1 0.02
29 43 0.75
30 1 0.02
ACGTcount: A:0.22, C:0.16, G:0.34, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAATCATA
Found at i:74623381 original size:40 final size:40
Alignment explanation
Indices: 74623336--74623502 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
74623326 CGGAATATAA
74623336 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
74623376 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74623416 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74623456 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74623495 CCGGATAT
1 CCGGATAT
74623503 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74623486 original size:80 final size:79
Alignment explanation
Indices: 74623352--74623502 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
74623342 ATAATCACGT
*
74623352 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
74623417 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
74623432 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
74623495 CCGGATAT
64 CCGGATAT
74623503 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:74630483 original size:93 final size:93
Alignment explanation
Indices: 74630371--74630542 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
74630361 GCCCATAAGT
* *
74630371 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74630436 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
74630464 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74630529 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
74630543 CAAATATCCT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74630538 original size:46 final size:46
Alignment explanation
Indices: 74630363--74630538 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
74630353 TGTAACCCGC
* * *
74630363 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
74630409 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
74630459 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
74630502 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74630539 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:74633803 original size:70 final size:71
Alignment explanation
Indices: 74633720--74633882 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
74633710 CGATTTGTCT
74633720 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74633784 CTTTCA
66 CTTTCA
74633790 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74633855 CTTTCA
66 CTTTCA
74633861 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
74633883 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:74633920 original size:71 final size:70
Alignment explanation
Indices: 74633720--74633916 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
74633710 CGATTTGTCT
* * * *
74633720 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
74633784 CTTTCA
65 CTTTCA
* * * *
74633790 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
74633855 CTTTCA
65 CTTTCA
* *
74633861 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
74633917 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 53 0.45
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:74641334 original size:70 final size:71
Alignment explanation
Indices: 74641251--74641413 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
74641241 CGATTTGTCT
74641251 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74641315 CTTTCA
66 CTTTCA
74641321 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74641386 CTTTCA
66 CTTTCA
74641392 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
74641414 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:74641451 original size:71 final size:70
Alignment explanation
Indices: 74641251--74641447 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
74641241 CGATTTGTCT
* * * *
74641251 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
74641315 CTTTCA
65 CTTTCA
* * * *
74641321 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
74641386 CTTTCA
65 CTTTCA
* *
74641392 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
74641448 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 53 0.45
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:74643868 original size:26 final size:26
Alignment explanation
Indices: 74643840--74643947 Score: 108
Period size: 26 Copynumber: 4.2 Consensus size: 26
74643830 GTTGCAAACG
* * **
74643840 GTAAGCTCATCCGAGCTAAAATAATG
1 GTAAACTCCTCCGAGCTAAAATAACA
* * *
74643866 GTAAGCTCCTCCGAGTTGAAATAACA
1 GTAAACTCCTCCGAGCTAAAATAACA
* * *
74643892 CTAAACTCCCCCGAGCTGAAATAACA
1 GTAAACTCCTCCGAGCTAAAATAACA
* *
74643918 GTAAACTCTTCCGAGCTAAAATAATA
1 GTAAACTCCTCCGAGCTAAAATAACA
74643944 GTAA
1 GTAA
74643948 CCCTAATGAC
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 68 1.00
ACGTcount: A:0.39, C:0.23, G:0.16, T:0.22
Consensus pattern (26 bp):
GTAAACTCCTCCGAGCTAAAATAACA
Found at i:74644506 original size:22 final size:22
Alignment explanation
Indices: 74644478--74644524 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
74644468 ATTTAACAAC
74644478 AACCATTCTTTTTCTATCATTA
1 AACCATTCTTTTTCTATCATTA
74644500 AACCATTCTTTTTCTATCATTA
1 AACCATTCTTTTTCTATCATTA
74644522 AAC
1 AAC
74644525 TTCAAAACCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.00, T:0.47
Consensus pattern (22 bp):
AACCATTCTTTTTCTATCATTA
Found at i:74650904 original size:27 final size:27
Alignment explanation
Indices: 74650874--74650931 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
74650864 CTATCTTTCA
* *
74650874 AACAGGGGACTGGCAGATTGTCTCGCT
1 AACAGGGAACTGACAGATTGTCTCGCT
* *
74650901 AACAGGTAACTGACGGATTGTCTCGCT
1 AACAGGGAACTGACAGATTGTCTCGCT
74650928 AACA
1 AACA
74650932 TATGGCTGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (27 bp):
AACAGGGAACTGACAGATTGTCTCGCT
Found at i:74659052 original size:203 final size:202
Alignment explanation
Indices: 74658656--74659060 Score: 521
Period size: 203 Copynumber: 2.0 Consensus size: 202
74658646 ATTTTAATTC
* * * *
74658656 TATTTTAATTGAGTTTTCTATTTGTATAACTTACTATTTTAAAATTCATTTAGTATTTTATATAT
1 TATTTTAATTGAGTTTTCTATTTGTATAACTTACTATTTTAAAATTCACTTAATATTTTATAAAA
* * * *** *
74658721 ATGTGTTGAGTTATTTTAATAATTTTGCTTTATTTTTATTTGTATAATTATTTTGAAGTTTATTT
66 ATGTGTTGAGCTATTTTAATAACTTTACTTTATTTTTATTAAAATAATTATTTTAAAGTTTATTT
* * *
74658786 ATTATATCATATTATTTCAACATTTTATATAATATTTGGTTTAAATATTTTTATATATATTTGTA
131 ATCATATCATACTATTTCAACATTTTATATAATATTTGGTTCAAATATTTTTATATATATTTGTA
74658851 CATATAT
196 CATATAT
* *
74658858 TATTTTAATTGAGTTTTCTATTTGTA-ATACTTATTATTTTAAAATTCACTTAATATTTTTTTAA
1 TATTTTAATTGAGTTTTCTATTTGTATA-ACTTACTATTTTAAAATTCACTTAATA-TTTTATAA
* *
74658922 AAACTGTGTTGAGCTATTTTTAATAACTTTACTTTGTTTTTA-TAAAATCATTATTTTAAAGTTC
64 AAA-TGTGTTGAGCTA-TTTTAATAACTTTACTTTATTTTTATTAAAATAATTATTTTAAAGTT-
* * * * * *
74658986 T-TTT-TCATATCATACTATTTTAATATTTTATGTAATATTTTGTTCAAGTGTTTTTATATATAT
126 TATTTATCATATCATACTATTTCAACATTTTATATAATATTTGGTTCAAATATTTTTATATATAT
74659049 TTGTACATATAT
191 TTGTACATATAT
74659061 AATTCATGGT
Statistics
Matches: 174, Mismatches: 24, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
201 1 0.01
202 50 0.29
203 70 0.40
204 30 0.17
205 23 0.13
ACGTcount: A:0.31, C:0.06, G:0.07, T:0.56
Consensus pattern (202 bp):
TATTTTAATTGAGTTTTCTATTTGTATAACTTACTATTTTAAAATTCACTTAATATTTTATAAAA
ATGTGTTGAGCTATTTTAATAACTTTACTTTATTTTTATTAAAATAATTATTTTAAAGTTTATTT
ATCATATCATACTATTTCAACATTTTATATAATATTTGGTTCAAATATTTTTATATATATTTGTA
CATATAT
Found at i:74663314 original size:19 final size:19
Alignment explanation
Indices: 74663290--74663336 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
74663280 TGAAGCCTAC
*
74663290 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTACAT-CA
74663309 TTTGCATTACATTACATCA
1 TTTGCATTACATTACATCA
*
74663328 TATGCATTA
1 TTTGCATTA
74663337 AAGACTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTACATCA
Found at i:74665275 original size:48 final size:48
Alignment explanation
Indices: 74665223--74665367 Score: 263
Period size: 48 Copynumber: 3.0 Consensus size: 48
74665213 GCTAAAGAGG
74665223 AAGGGTGTATATGCGCGTCAGAATCCACAATGAATGTCCCGAAAGTCA
1 AAGGGTGTATATGCGCGTCAGAATCCACAATGAATGTCCCGAAAGTCA
* *
74665271 AAGGGTGTATATGCACATCAGAATCCACAATGAATGTCCCGAAAGTCA
1 AAGGGTGTATATGCGCGTCAGAATCCACAATGAATGTCCCGAAAGTCA
*
74665319 AAGGGTGTATATGCGCGTCAGAATCCACAATAAATGTCCCGAAAGTCA
1 AAGGGTGTATATGCGCGTCAGAATCCACAATGAATGTCCCGAAAGTCA
74665367 A
1 A
74665368 TTATCCTGTG
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (48 bp):
AAGGGTGTATATGCGCGTCAGAATCCACAATGAATGTCCCGAAAGTCA
Found at i:74673609 original size:46 final size:46
Alignment explanation
Indices: 74673559--74673729 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
74673549 GGTTGAGCAT
*
74673559 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * * *
74673605 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TC
**
74673652 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* *
74673698 CGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
74673730 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.56
47 29 0.28
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:74673723 original size:93 final size:92
Alignment explanation
Indices: 74673555--74673724 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 92
74673545 GGATGGTTGA
**
74673555 GCATCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAGTT
74673620 GAGTCCGAGTTCGTGAAATGTAACTAG
66 GAGTCCGAGTTCGTGAAATGTAACTAG
* *
74673647 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAGCTCGTTGAGT
1 GCAT-CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAGT
*
74673712 TGAGTCTGAGTTC
65 TGAGTCCGAGTTC
74673725 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 4 0.06
93 68 0.94
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (92 bp):
GCATCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:74679450 original size:46 final size:46
Alignment explanation
Indices: 74679400--74679572 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
74679390 TGGTTGAGCA
74679400 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
74679446 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
**
74679491 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
74679539 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
74679573 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.58
47 29 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:74679556 original size:93 final size:93
Alignment explanation
Indices: 74679397--74679567 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
74679387 GGATGGTTGA
** *
74679397 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCATTGAGT
74679462 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
74679490 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCATTGAGT
74679555 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
74679568 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:74681055 original size:44 final size:44
Alignment explanation
Indices: 74681007--74681093 Score: 115
Period size: 44 Copynumber: 2.0 Consensus size: 44
74680997 AGCCACCAGC
* **
74681007 CTTATC-TCTCTGAGGTAGTAA-GAGAGCAGGTTGAAGATTGAAGT
1 CTTATCTTC-CTGAGGTAGCAAGGA-AGCAGACTGAAGATTGAAGT
74681051 CTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAG
1 CTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAG
74681094 ATCGAAGCAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
44 34 0.89
45 4 0.11
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (44 bp):
CTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGT
Found at i:74681100 original size:24 final size:24
Alignment explanation
Indices: 74681073--74681120 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
74681063 AGGTAGCAAG
74681073 GAAGCAGACTGAAGATTGAAGATC
1 GAAGCAGACTGAAGATTGAAGATC
74681097 GAAGCAGACTGAAGATTGAAGATC
1 GAAGCAGACTGAAGATTGAAGATC
74681121 TTATCTCCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.29, T:0.17
Consensus pattern (24 bp):
GAAGCAGACTGAAGATTGAAGATC
Found at i:74681254 original size:201 final size:201
Alignment explanation
Indices: 74680896--74681258 Score: 525
Period size: 201 Copynumber: 1.8 Consensus size: 201
74680886 AGGTAGCAAG
* * * * *
74680896 GAAGTAGACTGAAGATTGAAGATCTTGTCTCCTTAAGCAGTAGTAGAGTAGATCGAAAGAGGCGA
1 GAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATAGAAAGAGGCGA
* * * * *
74680961 ATCTTATCTCTATGTATCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGT
66 ATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAGCCACAAGCCTTATCTCCCTGAAGTAGT
*
74681026 AAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTG
131 AAGAGAGCAGGTTCAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTG
74681091 AAGATC
196 AAGATC
*
74681097 GAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAAGAGGCGA
1 GAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATAGAAAGAGGCGA
* * *
74681162 ATGTTATCTCCATGTATCAGCAATGGAGCAGATTTAAGACC-CAAGGCTTATCTCCCTGAAGTTG
66 ATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAG-CCACAAGCCTTATCTCCCTGAAGTAG
* *
74681226 -CAGTGGAGCAGGTTCAAGATAT-AAGTCTTATCT
130 TAAG-AGAGCAGGTTCAAGAT-TGAAGTCTTATCT
74681259 CCTTAAGCAG
Statistics
Matches: 142, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
200 2 0.01
201 137 0.96
202 3 0.02
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (201 bp):
GAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATAGAAAGAGGCGA
ATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAGCCACAAGCCTTATCTCCCTGAAGTAGT
AAGAGAGCAGGTTCAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTG
AAGATC
Found at i:74681356 original size:132 final size:132
Alignment explanation
Indices: 74681119--74681361 Score: 310
Period size: 132 Copynumber: 1.8 Consensus size: 132
74681109 AGATTGAAGA
* *
74681119 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAAGAGGCGAATGTTATCTCCATGTATCAGCA
1 TCTTATCTCCCTAAGCAGTAGAGGAGCAGATAGAAAGAGGCGAATCTTATCTCCATGTATCAGCA
* * * *
74681184 ATGGAGCAGATTTAAGACCCAAGGCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTCAAGATATA
66 ATAGAGCAGATTTAAGACCCAAGGCCTATCTCCCTAAAGTTACAGTGGAGCAGGTTCAAGATATA
74681249 AG
131 AG
* * * * * *
74681251 TCTTATCTCCTTAAGCAGTTGAGGAGCAGATCG-AGGATGGTGAATCTTATCTCCATGTATCGGC
1 TCTTATCTCCCTAAGCAGTAGAGGAGCAGATAGAAAGA-GGCGAATCTTATCTCCATGTATCAGC
* * * *
74681315 AATAGAGTAGATTT-AGACCACCAGTCCTATTTCCCTAAAGTTACAGT
65 AATAGAGCAGATTTAAGACC-CAAGGCCTATCTCCCTAAAGTTACAGT
74681362 CGAGATTCAA
Statistics
Matches: 93, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
131 8 0.09
132 85 0.91
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (132 bp):
TCTTATCTCCCTAAGCAGTAGAGGAGCAGATAGAAAGAGGCGAATCTTATCTCCATGTATCAGCA
ATAGAGCAGATTTAAGACCCAAGGCCTATCTCCCTAAAGTTACAGTGGAGCAGGTTCAAGATATA
AG
Found at i:74681431 original size:42 final size:42
Alignment explanation
Indices: 74681372--74681453 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 42
74681362 CGAGATTCAA
*
74681372 CAAAATCGGGCAAAATTAGCCATATTTGAAGTCTTTGCTCAG
1 CAAAATAGGGCAAAATTAGCCATATTTGAAGTCTTTGCTCAG
*
74681414 CAAAATAGGGCAAAATTAGCCCTATTTGAAGTCTTTGCTC
1 CAAAATAGGGCAAAATTAGCCATATTTGAAGTCTTTGCTC
74681454 TATTCTTGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (42 bp):
CAAAATAGGGCAAAATTAGCCATATTTGAAGTCTTTGCTCAG
Found at i:74681562 original size:26 final size:27
Alignment explanation
Indices: 74681523--74681574 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
74681513 AGCCCCTTAG
*
74681523 AAAAAAATAGAAATTAAAA-AAAAACA
1 AAAAAAAAAGAAATTAAAATAAAAACA
*
74681549 AAAAAAAAATAAATTAAAATAAAAAC
1 AAAAAAAAAGAAATTAAAATAAAAAC
74681575 CAATAAGAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.81, C:0.04, G:0.02, T:0.13
Consensus pattern (27 bp):
AAAAAAAAAGAAATTAAAATAAAAACA
Found at i:74683073 original size:202 final size:200
Alignment explanation
Indices: 74682725--74683126 Score: 506
Period size: 202 Copynumber: 2.0 Consensus size: 200
74682715 TATTTATTTC
* * *
74682725 TATTTTAATTGAGTTTTCTATTTGTATAACTTACTATTTTAAAATTCATTTAATACTTTATATAT
1 TATTTTAATTGAGTTTTCTATTTGTATAACTTACTATTTTAAAATTCACTTAATACTTTATAAAA
* * * ***
74682790 ATGTGTTGAGTTATTTTAATAATTTTGCTTTGTTTTATTTGTATAATTATTTTGAAATTCTTTTT
66 ATGTGTTGAGCTATTTTAATAACTTTACTTTGTTTTATTAAAATAATTATTTTGAAATTCTTTTT
* * * *
74682855 TATATCATATTATTTTAACATTTTGTATAATATTTGGTTTAAATATTTTT-TATATATTTGTACA
131 CATATCATACTATTTTAACATTTTATATAATATTTGGTTCAAATATTTTTATATATATTTGTACA
74682919 TATAT
196 TATAT
* * * * *
74682924 TATTTTAATTGAGTTTTCTATTTGTA-ATACTTATTTTTTTAAAATTTACTTAATATTTTTTTAA
1 TATTTTAATTGAGTTTTCTATTTGTATA-ACTTACTATTTTAAAATTCACTTAATA-CTTTATAA
*
74682988 AAATTGTGTTGAGCTATTTTTAATAACTTTACTTTGTTTT-TATAAAATCATTATTTT-AAAGTT
64 AAA-TGTGTTGAGCTA-TTTTAATAACTTTACTTTGTTTTAT-TAAAATAATTATTTTGAAA-TT
* * * * *
74683051 CTTTTTCATATCATACTATTTTAATATTTTATGTAATATTTTGTTCAAGTGTTTTTATATATATT
125 CTTTTTCATATCATACTATTTTAACATTTTATATAATATTTGGTTCAAATATTTTTATATATATT
74683116 TGTACATATAT
190 TGTACATATAT
74683127 AATTCATGGT
Statistics
Matches: 172, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
198 1 0.01
199 49 0.28
200 7 0.04
201 15 0.09
202 81 0.47
203 19 0.11
ACGTcount: A:0.30, C:0.06, G:0.07, T:0.57
Consensus pattern (200 bp):
TATTTTAATTGAGTTTTCTATTTGTATAACTTACTATTTTAAAATTCACTTAATACTTTATAAAA
ATGTGTTGAGCTATTTTAATAACTTTACTTTGTTTTATTAAAATAATTATTTTGAAATTCTTTTT
CATATCATACTATTTTAACATTTTATATAATATTTGGTTCAAATATTTTTATATATATTTGTACA
TATAT
Found at i:74688744 original size:26 final size:27
Alignment explanation
Indices: 74688687--74688750 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 27
74688677 TTTTACTAAA
* *
74688687 ATACCCCTAAGTATGAAAATTACCATT
1 ATACCCCTAGGTATGAAAATGACCATT
* * *
74688714 TTACCCCTAGGTGT-AAAATGACCGTT
1 ATACCCCTAGGTATGAAAATGACCATT
74688740 ATACCCCTAGG
1 ATACCCCTAGG
74688751 GTTAATTTTG
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
26 20 0.65
27 11 0.35
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (27 bp):
ATACCCCTAGGTATGAAAATGACCATT
Found at i:74689224 original size:28 final size:28
Alignment explanation
Indices: 74689124--74689229 Score: 74
Period size: 28 Copynumber: 3.7 Consensus size: 28
74689114 ACTTGTAATA
* * **
74689124 GGGCTATGGCCCAGATTGATGCTGATAT
1 GGGCTAAGGCCCAGATTAATATTGATAT
*
74689152 GGGCT-AGGCCCAGTATACTCTAATATTG-TAAG
1 GGGCTAAGGCCCAG---A-T-TAATATTGAT-AT
* *
74689184 GGGCTATGACCCAGATTAATATTGATAT
1 GGGCTAAGGCCCAGATTAATATTGATAT
74689212 GGGCTAAGGCCCAG-TTAA
1 GGGCTAAGGCCCAGATTAA
74689230 CTCTGATTTC
Statistics
Matches: 60, Mismatches: 10, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
27 11 0.18
28 26 0.43
29 2 0.03
30 2 0.03
31 2 0.03
32 11 0.18
33 6 0.10
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATATTGATAT
Found at i:74691995 original size:41 final size:41
Alignment explanation
Indices: 74691797--74692037 Score: 241
Period size: 41 Copynumber: 5.9 Consensus size: 41
74691787 AAACGCTGCA
* *
74691797 AAAAACTCAGCAATAGCTGCGTTTTTGGTCCAAACGCCACT
1 AAAAACTGAGCAATAGCAGCGTTTTTGGTCCAAACGCCACT
* * * *
74691838 AAAAATTGAGCAATAGCGGCGTTTGTGGTCAAAACGCCACT
1 AAAAACTGAGCAATAGCAGCGTTTTTGGTCCAAACGCCACT
* *
74691879 AAAAACTGAGCAGTAGCAGCGTTTTTGGTCAAAACGCCACT
1 AAAAACTGAGCAATAGCAGCGTTTTTGGTCCAAACGCCACT
** * * * *
74691920 AAAAACTGAGCAATAGCAGTATTTTTTGTACAAATGCCGCT
1 AAAAACTGAGCAATAGCAGCGTTTTTGGTCCAAACGCCACT
* * ** *
74691961 AAAAACTTAGCAATAGCAGCTTTTTTAATCCAAATGCCA-T
1 AAAAACTGAGCAATAGCAGCGTTTTTGGTCCAAACGCCACT
* * * ** *
74692001 AAAAAGTTGATCTATAGTGGCGTTTTTAGTCCAAACG
1 AAAAA-CTGAGCAATAGCAGCGTTTTTGGTCCAAACG
74692038 GCCCAAAAAG
Statistics
Matches: 166, Mismatches: 33, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
40 6 0.04
41 160 0.96
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.27
Consensus pattern (41 bp):
AAAAACTGAGCAATAGCAGCGTTTTTGGTCCAAACGCCACT
Found at i:74692572 original size:15 final size:15
Alignment explanation
Indices: 74692552--74692581 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
74692542 GTTTAAGGTC
74692552 TATGGTTTAGGGTTT
1 TATGGTTTAGGGTTT
*
74692567 TATGGTTTATGGTTT
1 TATGGTTTAGGGTTT
74692582 AATGATTAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.00, G:0.30, T:0.57
Consensus pattern (15 bp):
TATGGTTTAGGGTTT
Found at i:74693096 original size:40 final size:40
Alignment explanation
Indices: 74693049--74693150 Score: 159
Period size: 40 Copynumber: 2.5 Consensus size: 40
74693039 ATCTAGTGGC
* * * *
74693049 ATTAGCGGCGCTTTTTTAAAAACGCCACTAAAGATCGAGT
1 ATTAGCGGTGCTTTTTCAAAAACGCCACTAAAGATCAAGA
*
74693089 ATTAGCGGTGCTTTTTGAAAAACGCCACTAAAGATCAAGA
1 ATTAGCGGTGCTTTTTCAAAAACGCCACTAAAGATCAAGA
74693129 ATTAGCGGTGCTTTTTCAAAAA
1 ATTAGCGGTGCTTTTTCAAAAA
74693151 TGCCGCAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (40 bp):
ATTAGCGGTGCTTTTTCAAAAACGCCACTAAAGATCAAGA
Found at i:74693280 original size:40 final size:40
Alignment explanation
Indices: 74693206--74693283 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
74693196 TTAGTGACAT
** *
74693206 TAAATGTCAAGCATTAGTGGCGCTAGTGTAAAAACGCCAC
1 TAAATGTCAAGCATTAGCAGCGCTAGTGGAAAAACGCCAC
* * *
74693246 TAAATGTCGAGCATTAGCAGCGCTATTGGGAAAACGCC
1 TAAATGTCAAGCATTAGCAGCGCTAGTGGAAAAACGCC
74693284 GCAAATATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (40 bp):
TAAATGTCAAGCATTAGCAGCGCTAGTGGAAAAACGCCAC
Found at i:74693412 original size:165 final size:165
Alignment explanation
Indices: 74693206--74693555 Score: 436
Period size: 165 Copynumber: 2.1 Consensus size: 165
74693196 TTAGTGACAT
* * * *
74693206 TAAATGTCAAGCATTAGTGGCGCTAGTGTAAAAACGCCACTAAATGTCGAGCATTAGCAG-CGCT
1 TAAATGTCAAACATTAGTGGCACTAGTGTAAAAACGCCACTAAATGTCAAGCATTAG-AGACACT
* * * *
74693270 ATTGGGAAAACGCCGCAAATATATATGGGCATTAAGCTTGACAACGTCGTTTTATCAAAAAGGCA
65 ATTGGGAAAACGCCGCAAATAAATATGGGCAGTAAGCTAGACAACGTCATTTTATCAAAAAGGCA
* * **
74693335 CAAAAAAT-GTTAGTGGTGCTACTGGGAAAACGCCGC
130 C-AAAAATCATTAGCGGCACTACTGGGAAAACGCCGC
* * *
74693371 TAAATGTCAAACATTAGTGGCACTA-TGGTAAAAATGCCACTAAATGTTAAGCATTAGTGACACT
1 TAAATGTCAAACATTAGTGGCACTAGT-GTAAAAACGCCACTAAATGTCAAGCATTAGAGACACT
* * * *
74693435 CTTGGGAAAATGCCGCAAATAAATATGGGCAGTAAGCTAGACGACGTCATTTTATCAAAAAGGCG
65 ATTGGGAAAACGCCGCAAATAAATATGGGCAGTAAGCTAGACAACGTCATTTTATCAAAAAGGCA
* * *
74693500 CAAAAATCATTAGCGGCACTATTGGGTAAACGCTGC
130 CAAAAATCATTAGCGGCACTACTGGGAAAACGCCGC
* *
74693536 TAAATTTCAATCATTAGTGG
1 TAAATGTCAAACATTAGTGG
74693556 TGTTATTATA
Statistics
Matches: 158, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
164 8 0.05
165 150 0.95
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.25
Consensus pattern (165 bp):
TAAATGTCAAACATTAGTGGCACTAGTGTAAAAACGCCACTAAATGTCAAGCATTAGAGACACTA
TTGGGAAAACGCCGCAAATAAATATGGGCAGTAAGCTAGACAACGTCATTTTATCAAAAAGGCAC
AAAAATCATTAGCGGCACTACTGGGAAAACGCCGC
Found at i:74693445 original size:40 final size:39
Alignment explanation
Indices: 74693357--74693448 Score: 103
Period size: 40 Copynumber: 2.3 Consensus size: 39
74693347 GTGGTGCTAC
* * *
74693357 TGGGAAAACGCCGCTAAATGTCAAACATTAGTGGCACTA
1 TGGGAAAATGCCACTAAATGTCAAACATTAGTGACACTA
* * * *
74693396 TGGTAAAAATGCCACTAAATGTTAAGCATTAGTGACACTCT
1 TGG-GAAAATGCCACTAAATGTCAAACATTAGTGACACT-A
74693437 TGGGAAAATGCC
1 TGGGAAAATGCC
74693449 GCAAATAAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
39 3 0.07
40 37 0.86
41 3 0.07
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (39 bp):
TGGGAAAATGCCACTAAATGTCAAACATTAGTGACACTA
Found at i:74697573 original size:20 final size:18
Alignment explanation
Indices: 74697550--74697588 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
74697540 AAATAAATTT
74697550 AATTCATAAAAATATATATA
1 AATTCA-AAAAATAT-TATA
*
74697570 AATTCAAAACATATTATA
1 AATTCAAAAAATATTATA
74697588 A
1 A
74697589 CCAAAACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 7 0.39
20 6 0.33
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (18 bp):
AATTCAAAAAATATTATA
Found at i:74697724 original size:49 final size:49
Alignment explanation
Indices: 74697663--74697767 Score: 174
Period size: 49 Copynumber: 2.1 Consensus size: 49
74697653 ATTTAATCCA
* *
74697663 ATAATTTCCTTAAAAGTATTTAGTTTAAAGTTTAAATTTCATAACTTGC
1 ATAATTTCCTTAAAAGTATATAGTTTAAAGTTTAAATTTCATAACTTAC
* *
74697712 ATAATTTCCTTAAAATTGTATAGTTTAAAGTTTAAATTTCATAACTTAC
1 ATAATTTCCTTAAAAGTATATAGTTTAAAGTTTAAATTTCATAACTTAC
74697761 ATAATTT
1 ATAATTT
74697768 ACATAACTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.46
Consensus pattern (49 bp):
ATAATTTCCTTAAAAGTATATAGTTTAAAGTTTAAATTTCATAACTTAC
Found at i:74697769 original size:9 final size:9
Alignment explanation
Indices: 74697751--74697971 Score: 225
Period size: 9 Copynumber: 24.6 Consensus size: 9
74697741 GTTTAAATTT
74697751 CATAACTTA
1 CATAACTTA
*
74697760 CATAATTTA
1 CATAACTTA
74697769 CATAACTTA
1 CATAACTTA
74697778 CATAA--TA
1 CATAACTTA
*
74697785 CATAA-ATA
1 CATAACTTA
* * *
74697793 TATATCATA
1 CATAACTTA
74697802 TCATAACTTA
1 -CATAACTTA
*
74697812 CATAACTCA
1 CATAACTTA
*
74697821 CACAACTTA
1 CATAACTTA
74697830 CATAACTTA
1 CATAACTTA
74697839 -ATAACTTA
1 CATAACTTA
* *
74697847 TATATATCATA
1 CATA-A-CTTA
74697858 TCATAACTTA
1 -CATAACTTA
*
74697868 CATAACTCA
1 CATAACTTA
74697877 CATAACTTA
1 CATAACTTA
74697886 CATAACTTA
1 CATAACTTA
* *
74697895 CATACCTCA
1 CATAACTTA
*
74697904 CATAATTTA
1 CATAACTTA
74697913 CATAACTTA
1 CATAACTTA
* *
74697922 CATACCTCA
1 CATAACTTA
74697931 CATAACTTA
1 CATAACTTA
*
74697940 CATAACTCA
1 CATAACTTA
*
74697949 AATAACTTA
1 CATAACTTA
74697958 CATAACTTA
1 CATAACTTA
74697967 CATAA
1 CATAA
74697972 TACATAAATA
Statistics
Matches: 175, Mismatches: 30, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
7 7 0.04
8 13 0.07
9 138 0.79
10 10 0.06
11 4 0.02
12 3 0.02
ACGTcount: A:0.45, C:0.22, G:0.00, T:0.33
Consensus pattern (9 bp):
CATAACTTA
Found at i:74703070 original size:13 final size:14
Alignment explanation
Indices: 74703054--74703082 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
74703044 TTTTAAATAT
74703054 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
74703067 TTATAATGGTTTAA
1 TTATAATGGTTTAA
74703081 TT
1 TT
74703083 TGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:74703913 original size:42 final size:43
Alignment explanation
Indices: 74703867--74703953 Score: 131
Period size: 43 Copynumber: 2.0 Consensus size: 43
74703857 GAACATGACA
* * *
74703867 TTTAGTGGCGTTTTTG-TAAAAGCGCCGCTAAAGGTCACATTC
1 TTTAGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGCTCACATTC
*
74703909 TTTAGCGGCGTTTTTGAGAAAAGCGCGGCTAAAGCTCACATTC
1 TTTAGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGCTCACATTC
74703952 TT
1 TT
74703954 CACACAAATG
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 15 0.38
43 25 0.62
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGCTCACATTC
Found at i:74710178 original size:21 final size:21
Alignment explanation
Indices: 74710154--74710195 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
74710144 ATTAACAAAC
*
74710154 AAACAAAATGATTTGGGGAAA
1 AAACAAAAGGATTTGGGGAAA
* *
74710175 AAACTAACGGATTTGGGGAAA
1 AAACAAAAGGATTTGGGGAAA
74710196 TTACAGCAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.48, C:0.07, G:0.26, T:0.19
Consensus pattern (21 bp):
AAACAAAAGGATTTGGGGAAA
Found at i:74715701 original size:95 final size:95
Alignment explanation
Indices: 74715584--74715767 Score: 235
Period size: 95 Copynumber: 1.9 Consensus size: 95
74715574 ACTTTTAATA
* * * * * * *
74715584 GCGTTTATGGGAAAAATACCGCTATCATTTTAGCCTTTTGTGGTGTTTATGCAAAAATGCCACCA
1 GCGTTTATAGAAAAAACACCGCTATCAGTTTAACCTTTTGCGATGTTTATGCAAAAATGCCACCA
74715649 TTGGTTTACC-TTTAGCGGCATTTACTAGTG
66 TTGGTTTACCTTTTA-CGGCATTTACTAGTG
* * ** *
74715679 GCGTTTATAGAAAAAACGCCGCTATTAGTTTAACCTTTTGCGATGTTTATGCAAAAATGCTGCTA
1 GCGTTTATAGAAAAAACACCGCTATCAGTTTAACCTTTTGCGATGTTTATGCAAAAATGCCACCA
*
74715744 TTGTTTTACCTTTTACGGCATTTA
66 TTGGTTTACCTTTTACGGCATTTA
74715768 TGAAAAAAAG
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
95 71 0.95
96 4 0.05
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (95 bp):
GCGTTTATAGAAAAAACACCGCTATCAGTTTAACCTTTTGCGATGTTTATGCAAAAATGCCACCA
TTGGTTTACCTTTTACGGCATTTACTAGTG
Found at i:74722031 original size:38 final size:38
Alignment explanation
Indices: 74721989--74722066 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
74721979 TAAGTTTTGT
*
74721989 ATAAGAGTTTTATAGTTCTATCAAGTGATATTCAAGCC
1 ATAAGAGTTTTATAGTTCTATCAAGTGACATTCAAGCC
74722027 ATAAGAGTTTTATAGTTCTATCAAGTGACATTCAAGCC
1 ATAAGAGTTTTATAGTTCTATCAAGTGACATTCAAGCC
74722065 AT
1 AT
74722067 GTAATTTCAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (38 bp):
ATAAGAGTTTTATAGTTCTATCAAGTGACATTCAAGCC
Found at i:74724226 original size:34 final size:34
Alignment explanation
Indices: 74724182--74724249 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
74724172 GCACAGTTGA
* *
74724182 ACAGTCTTGGGCCTAAGCCCTTTTCAGTATCAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTA-CAGTG
*
74724217 ACAGT-TTGGGCCTTAGCCCATCTCAGTACAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTACAGTG
74724250 TCAAAAATGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 5 0.17
34 20 0.67
35 5 0.17
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (34 bp):
ACAGTCTTGGGCCTAAGCCCATCTCAGTACAGTG
Found at i:74725327 original size:28 final size:28
Alignment explanation
Indices: 74725286--74725350 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
74725276 CACGGGCTGA
* * *
74725286 GACACAGGCGTGTCATGGTCGTGTGAGG
1 GACACGGGCATGTCATGGCCGTGTGAGG
74725314 GACACGGGCATGTCATGGCCGTGTGAGG
1 GACACGGGCATGTCATGGCCGTGTGAGG
74725342 GACACGGGC
1 GACACGGGC
74725351 CATGACACAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.18, C:0.22, G:0.43, T:0.17
Consensus pattern (28 bp):
GACACGGGCATGTCATGGCCGTGTGAGG
Found at i:74727133 original size:32 final size:29
Alignment explanation
Indices: 74727065--74727134 Score: 70
Period size: 32 Copynumber: 2.3 Consensus size: 29
74727055 TTTAAATAAA
* *
74727065 TTTTAAAATTTCTTTTTAATTTATTTTAT
1 TTTTAAAATTTCTCTTTAATTTATTTTAC
74727094 TTATTAAATTATTTCTCTTTAA-TTAGGTTTTAC
1 TT-TTAAA--ATTTCTCTTTAATTTA--TTTTAC
74727127 TTTTAAAA
1 TTTTAAAA
74727135 ATATTATTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
29 2 0.06
30 6 0.18
31 3 0.09
32 16 0.47
33 7 0.21
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (29 bp):
TTTTAAAATTTCTCTTTAATTTATTTTAC
Found at i:74728266 original size:41 final size:41
Alignment explanation
Indices: 74728197--74728443 Score: 277
Period size: 41 Copynumber: 6.0 Consensus size: 41
74728187 TAGTAAAACA
* * * *
74728197 CAGAGCAATAGCAGCG-TTTTACTAAAAACGCCACTAAAAAT
1 CAGAGCAATAGCGGCGTTTTTAGT-AAAACGCCGCTAAAAGT
* *
74728238 -AGAGCAATAGCGGCGTTTTTTACTAAAACGCCGCTAAAA-A
1 CAGAGCAATAGCGGCG-TTTTTAGTAAAACGCCGCTAAAAGT
* * *
74728278 CAGAGCAATAGCGGCGCTTTTGGTAAAATGCCGCTAAAAGT
1 CAGAGCAATAGCGGCGTTTTTAGTAAAACGCCGCTAAAAGT
*
74728319 CGGAGCAATAGCGGCGCTTTTT-GTAAAACGCCGCTAAAAGT
1 CAGAGCAATAGCGGCG-TTTTTAGTAAAACGCCGCTAAAAGT
* * * *
74728360 CGGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGT
1 CAGAGCAATAGCGGCGTTTTTAGTAAAACGCCGCTAAAAGT
* * * *
74728401 CAGAGCATTAGCGGCGCTTTTGGTAAAACGTCGCTAAAAGT
1 CAGAGCAATAGCGGCGTTTTTAGTAAAACGCCGCTAAAAGT
74728442 CA
1 CA
74728444 TATAACCCCT
Statistics
Matches: 185, Mismatches: 15, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
40 37 0.20
41 137 0.74
42 11 0.06
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (41 bp):
CAGAGCAATAGCGGCGTTTTTAGTAAAACGCCGCTAAAAGT
Found at i:74728428 original size:123 final size:122
Alignment explanation
Indices: 74728199--74728442 Score: 321
Period size: 123 Copynumber: 2.0 Consensus size: 122
74728189 GTAAAACACA
*
74728199 GAGCAATAGCAGCGTTTTACTAAAAACGCCACTAAAAATAGAGCAATAGCGGCGTTTTTTACTAA
1 GAGCAATAGCAGCGTTTTACTAAAAACGCCACTAAAAATAGAGCAATAGCGGCGTCTTTTACTAA
*
74728264 AACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAATGCCGCTAAAAGTCG
66 AACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
* ** * * * * **
74728321 GAGCAATAGCGGCGCTTTTTGT-AAAACGCCGCTAAAAGTCGGAGCATTAGCGGCG-CTTTTGGT
1 GAGCAATAGCAGCG-TTTTACTAAAAACGCCACTAAAAAT-AGAGCAATAGCGGCGTCTTTTACT
* * *
74728384 AAAACGCCGCTAAAAGTCAGAGCATTAGCGGCGCTTTTGGTAAAACGTCGCTAAAAGTC
64 AAAACGCCGCTAAAA-ACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTC
74728443 ATATAACCCC
Statistics
Matches: 105, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
122 48 0.46
123 57 0.54
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (122 bp):
GAGCAATAGCAGCGTTTTACTAAAAACGCCACTAAAAATAGAGCAATAGCGGCGTCTTTTACTAA
AACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
Found at i:74728440 original size:82 final size:82
Alignment explanation
Indices: 74728197--74728443 Score: 311
Period size: 82 Copynumber: 3.0 Consensus size: 82
74728187 TAGTAAAACA
* ** * * *
74728197 CAGAGCAATAGCAGCG-TTTTACTAAAAACGCCACTAAAAAT-AGAGCAATAGCGGCGTTTTTTA
1 CAGAGCAATAGCGGCGCTTTTGGT-AAAACGCCGCTAAAAGTCAGAGCAATAGCGGCG-CTTTTA
* *
74728260 CTAAAACGCCGCTAAAA-A
64 GTAAAACGCCGCTAAAAGT
* * *
74728278 CAGAGCAATAGCGGCGCTTTTGGTAAAATGCCGCTAAAAGTCGGAGCAATAGCGGCGCTTTTTGT
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGCTTTTAGT
74728343 AAAACGCCGCTAAAAGT
66 AAAACGCCGCTAAAAGT
* * * *
74728360 CGGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCAGAGCATTAGCGGCGCTTTTGGT
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGCTTTTAGT
*
74728425 AAAACGTCGCTAAAAGT
66 AAAACGCCGCTAAAAGT
74728442 CA
1 CA
74728444 TATAACCCCT
Statistics
Matches: 144, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
81 49 0.34
82 95 0.66
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (82 bp):
CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCAGAGCAATAGCGGCGCTTTTAGT
AAAACGCCGCTAAAAGT
Found at i:74728727 original size:15 final size:15
Alignment explanation
Indices: 74728688--74728738 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
74728678 CGGTTTAATA
*
74728688 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* * *
74728702 TCTATGATTTAGGGT
1 TTTATGGTTTAAGGT
74728717 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
74728732 TTAATGG
1 TTTATGG
74728739 CCATGGGTAT
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
14 10 0.36
15 18 0.64
ACGTcount: A:0.24, C:0.02, G:0.27, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:74734689 original size:43 final size:43
Alignment explanation
Indices: 74734582--74734719 Score: 226
Period size: 43 Copynumber: 3.2 Consensus size: 43
74734572 GTCTGTTATA
*
74734582 TAGCGGCATTT-TCAGGAAAAGCGCCGCTAAAAGTCATGACCTTT
1 TAGCGGCGTTTGT-AGGAAAAGCGCCGCTAAAAGTCATGACC-TT
74734626 TAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAGTCATGACCTT
1 TAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAGTCATGACCTT
74734669 TAGCGGCGTTTGT-GGTAAAAGCGCCGCTAAAAGTCATGACCTT
1 TAGCGGCGTTTGTAGG-AAAAGCGCCGCTAAAAGTCATGACCTT
74734712 TAGCGGCG
1 TAGCGGCG
74734720 CTTTTTCAAA
Statistics
Matches: 91, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
42 2 0.02
43 50 0.55
44 38 0.42
45 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.24
Consensus pattern (43 bp):
TAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAAGTCATGACCTT
Found at i:74735364 original size:24 final size:24
Alignment explanation
Indices: 74735328--74735382 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
74735318 TACTAAATAG
* * *
74735328 TAAT-ATTACACATATTTATTTAA
1 TAATAATTAAACATATGTAGTTAA
*
74735351 TAATAATTAAACATGTGTAGTTAA
1 TAATAATTAAACATATGTAGTTAA
74735375 TAAGTAAT
1 TAA-TAAT
74735383 AAAATAATGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 4 0.15
24 18 0.69
25 4 0.15
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.42
Consensus pattern (24 bp):
TAATAATTAAACATATGTAGTTAA
Found at i:74735513 original size:13 final size:13
Alignment explanation
Indices: 74735457--74735517 Score: 54
Period size: 13 Copynumber: 4.8 Consensus size: 13
74735447 AGCGTATAAT
*
74735457 ATAATTTATAAATA
1 ATAATATATAAA-A
*
74735471 A-AATGTATAAAA
1 ATAATATATAAAA
***
74735483 ATAATATA-ATGG
1 ATAATATATAAAA
74735495 ATAATATATAAAA
1 ATAATATATAAAA
74735508 ATAATATATA
1 ATAATATATA
74735518 TTACTTTATA
Statistics
Matches: 37, Mismatches: 8, Indels: 5
0.74 0.16 0.10
Matches are distributed among these distances:
12 11 0.30
13 25 0.68
14 1 0.03
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (13 bp):
ATAATATATAAAA
Found at i:74737141 original size:98 final size:98
Alignment explanation
Indices: 74736972--74737210 Score: 406
Period size: 98 Copynumber: 2.4 Consensus size: 98
74736962 CGTGGTACAA
* * *
74736972 AGCCATTGATAATGGGTCTATAATCGGCACGAAGCCCAAAATATCGATACGAAGCCCACAATAAC
1 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACGAAGCCCACAATAAC
74737037 GACACACAGCCTTCGGTAACATGATCAGCACTC
66 GACACACAGCCTTCGGTAACATGATCAGCACTC
74737070 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACGAAGCCCACAATAAC
1 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACGAAGCCCACAATAAC
* *
74737135 GGCACACAGCCTTCGGTAACATGATCGGCACTC
66 GACACACAGCCTTCGGTAACATGATCAGCACTC
* * *
74737168 ATCCATTGTTAACGGGTCTATAATCAGCACGAAGCCTACAATA
1 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATA
74737211 ACGGCACACA
Statistics
Matches: 133, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 133 1.00
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (98 bp):
AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACGAAGCCCACAATAAC
GACACACAGCCTTCGGTAACATGATCAGCACTC
Found at i:74737300 original size:27 final size:26
Alignment explanation
Indices: 74737261--74737342 Score: 101
Period size: 27 Copynumber: 3.1 Consensus size: 26
74737251 TCGACCGGTC
*
74737261 AACAGATATTGTGACAAAGTCACCAG
1 AACAGATATTGTGACAAAGCCACCAG
*
74737287 ATACAGATATTGTGACAGAGCCACCAG
1 A-ACAGATATTGTGACAAAGCCACCAG
* * *
74737314 AACAGATATTTGTGGCATAGCCACTAG
1 AACAGATA-TTGTGACAAAGCCACCAG
74737341 AA
1 AA
74737343 TGCTTCCTCC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.21
Consensus pattern (26 bp):
AACAGATATTGTGACAAAGCCACCAG
Found at i:74737550 original size:27 final size:27
Alignment explanation
Indices: 74737520--74737663 Score: 198
Period size: 27 Copynumber: 5.3 Consensus size: 27
74737510 ATTACCATTT
* * *
74737520 TACCCCACAAGGGTATCTCGGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
* *
74737547 TACCCTATAGGGGTATTTCAGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
*
74737574 TACCTTACAGGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
* * *
74737601 TACCTTACAGGGGTATTTCAGTAATCC
1 TACCCTACAGGGGTATTTCGGTAATTC
*
74737628 TACCCTACAGGGGTATTTCGGTATTTC
1 TACCCTACAGGGGTATTTCGGTAATTC
74737655 TACCCTACA
1 TACCCTACA
74737664 TGTGACAGCC
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCGGTAATTC
Found at i:74739038 original size:28 final size:28
Alignment explanation
Indices: 74738977--74739074 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
74738967 TCACAAATTG
** * *
74738977 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
74739006 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
74739034 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
74739062 GCACTAAGTGTGC
1 GCACTAAGTGTGC
74739075 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:74740670 original size:80 final size:81
Alignment explanation
Indices: 74740532--74740719 Score: 256
Period size: 80 Copynumber: 2.3 Consensus size: 81
74740522 GTTCGGGGTG
* *
74740532 TTACACTACAAGGGTATTTCAGTAATTCTACCCTACAGGGATATTTTAGTAATTCTACCCTACAG
1 TTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGATATTTGAGTAATTCTACCCTACAG
* *
74740597 -GGTATTTCGGTATTT
66 TGGTATTTCAGTAATT
* * *
74740612 TTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGTG-TATTTCGA-TAATTCTACCCTAT
1 TTACCCTACAAGGGTATTTCAGTAATTCTACCCTAC-AGGGATATTT-GAGTAATTCTACCCTAC
*
74740675 AGTGGTATTTTAGTAATT
64 AGTGGTATTTCAGTAATT
*
74740693 TTACCCTACAAGGGTATTTAAGTAATT
1 TTACCCTACAAGGGTATTTCAGTAATT
74740720 TTACAAATCG
Statistics
Matches: 95, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
80 54 0.57
81 41 0.43
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (81 bp):
TTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGATATTTGAGTAATTCTACCCTACAG
TGGTATTTCAGTAATT
Found at i:74740723 original size:27 final size:27
Alignment explanation
Indices: 74740537--74740719 Score: 221
Period size: 27 Copynumber: 6.8 Consensus size: 27
74740527 GGGTGTTACA
74740537 CTACAAGGGTATTTCAGTAATTCTACC
1 CTACAAGGGTATTTCAGTAATTCTACC
*
74740564 CTAC-AGGGATATTTTAGTAATTCTACC
1 CTACAAGGG-TATTTCAGTAATTCTACC
* * *
74740591 CTAC-AGGGTATTTCGGTATTTTTACC
1 CTACAAGGGTATTTCAGTAATTCTACC
*
74740617 CTACAAGGGTATTTCGGTAATTCTACC
1 CTACAAGGGTATTTCAGTAATTCTACC
*
74740644 CTACAAGTGTATTTC-GATAATTCTACC
1 CTACAAGGGTATTTCAG-TAATTCTACC
* * *
74740671 CTA-TAGTGGTATTTTAGTAATTTTACC
1 CTACAAG-GGTATTTCAGTAATTCTACC
*
74740698 CTACAAGGGTATTTAAGTAATT
1 CTACAAGGGTATTTCAGTAATT
74740720 TTACAAATCG
Statistics
Matches: 136, Mismatches: 14, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
26 25 0.18
27 108 0.79
28 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (27 bp):
CTACAAGGGTATTTCAGTAATTCTACC
Found at i:74740733 original size:27 final size:26
Alignment explanation
Indices: 74740703--74740882 Score: 197
Period size: 27 Copynumber: 6.7 Consensus size: 26
74740693 TTACCCTACA
74740703 AGGGTATTTAAGTAATTTTACAAATCG
1 AGGGTATTT-AGTAATTTTACAAATCG
*
74740730 AGGGTATGTTAGTAATTTTCCAAAAT-G
1 AGGGTAT-TTAGTAATTTTAC-AAATCG
*
74740757 AGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTT-AGTAATTTTACAAATCG
74740784 AGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTT-AGTAATTTTACAAATCG
* * *
74740810 ACGGTATTTCGATAATTTTATAAATC-
1 AGGGTATTTAG-TAATTTTACAAATCG
*
74740836 AGGGTTACTTTAGTAATTTTAC-AATTG
1 AGGG-TA-TTTAGTAATTTTACAAATCG
74740863 AGGGTATTTCAGTAATTTTA
1 AGGGTATTT-AGTAATTTTA
74740883 GTAAACTAAA
Statistics
Matches: 132, Mismatches: 11, Indels: 21
0.80 0.07 0.13
Matches are distributed among these distances:
25 4 0.03
26 45 0.34
27 73 0.55
28 10 0.08
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (26 bp):
AGGGTATTTAGTAATTTTACAAATCG
Found at i:74740736 original size:54 final size:52
Alignment explanation
Indices: 74740532--74740857 Score: 189
Period size: 54 Copynumber: 6.1 Consensus size: 52
74740522 GTTCGGGGTG
* * **
74740532 TTACACTACAAGGGTATTTCAGTAATTCTAC-CCTACAGGGATATTTTAGTAATT
1 TTACCCTACAAGGGTATTT-AGTAATTTTACAAAT-CAGGG-TATTTTAGTAATT
* * * ** **
74740586 CTACCCTAC-AGGGTATTTCGGTATTTTTAC-CCTACAAGGGTATTTCGGTAATT
1 TTACCCTACAAGGGTATTT-AGTAATTTTACAAAT-C-AGGGTATTTTAGTAATT
* * * * **
74740639 CTACCCTACAAGTGTATTTCGATAATTCTACCCTAT-AGTGGTATTTTAGTAATT
1 TTACCCTACAAGGGTATTTAG-TAATTTTA-CAAATCAG-GGTATTTTAGTAATT
*
74740693 TTACCCTACAAGGGTATTTAAGTAATTTTACAAATCGAGGGTATGTTAGTAATT
1 TTACCCTACAAGGGTATTT-AGTAATTTTACAAATC-AGGGTATTTTAGTAATT
* * * *
74740747 TT--CCAAAATGAGGGTATTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATT
1 TTACCCTACA--AGGGTATTT-AGTAATTTTACAAATC-AGGGTATTTTAGTAATT
** * * * * *
74740801 TTACAAT-CGACGGTATTTCGATAATTTTATAAATCAGGGTTACTTTAGTAATT
1 TTACCCTACAAGGGTATTTAG-TAATTTTACAAATCAGGG-TATTTTAGTAATT
74740854 TTAC
1 TTAC
74740858 AATTGAGGGT
Statistics
Matches: 218, Mismatches: 39, Indels: 31
0.76 0.14 0.11
Matches are distributed among these distances:
52 8 0.04
53 85 0.39
54 120 0.55
55 4 0.02
56 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39
Consensus pattern (52 bp):
TTACCCTACAAGGGTATTTAGTAATTTTACAAATCAGGGTATTTTAGTAATT
Found at i:74740851 original size:53 final size:50
Alignment explanation
Indices: 74740703--74740882 Score: 209
Period size: 53 Copynumber: 3.4 Consensus size: 50
74740693 TTACCCTACA
* *
74740703 AGGGTATTTAAGTAATTTTACAAATCGAGGGTATGTTAGTAATTTTCCAAAATG
1 AGGGTATTTCA-TAATTTTACAAATCGAGGGTAT-TTAGTAATTTT--ACAATG
74740757 AGGGTATTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCG
1 AGGGTATTTC-ATAATTTTACAAATCGAGGGTATTT-AGTAATTTTACAAT-G
* *
74740810 ACGGTATTTCGATAATTTTATAAATC-AGGGTTACTTTAGTAATTTTACAATTG
1 AGGGTATTTC-ATAATTTTACAAATCGAGGG-TA-TTTAGTAATTTTACAA-TG
74740863 AGGGTATTTCAGTAATTTTA
1 AGGGTATTTCA-TAATTTTA
74740883 GTAAACTAAA
Statistics
Matches: 113, Mismatches: 6, Indels: 15
0.84 0.04 0.11
Matches are distributed among these distances:
52 9 0.08
53 59 0.52
54 44 0.39
55 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (50 bp):
AGGGTATTTCATAATTTTACAAATCGAGGGTATTTAGTAATTTTACAATG
Found at i:74742595 original size:24 final size:24
Alignment explanation
Indices: 74742540--74742595 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
74742530 GTTTTAGGCC
*
74742540 TTTTGGG-TGCAAATGTAAATGGG
1 TTTTGGGCTGCAAATGTAAATGAG
** * *
74742563 TAATAGGCTGTAAATGTAAATGAG
1 TTTTGGGCTGCAAATGTAAATGAG
74742587 TTTTGGGCT
1 TTTTGGGCT
74742596 TTGTACATGG
Statistics
Matches: 24, Mismatches: 8, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.29, C:0.05, G:0.30, T:0.36
Consensus pattern (24 bp):
TTTTGGGCTGCAAATGTAAATGAG
Found at i:74742981 original size:44 final size:44
Alignment explanation
Indices: 74742926--74743073 Score: 242
Period size: 44 Copynumber: 3.4 Consensus size: 44
74742916 GCTATGTTGA
*
74742926 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGT
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * * *
74742970 TATCTTTGATCTGGTCTCTGACAATACAGAGATGCCAAATCTAC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
*
74743014 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATTTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
74743058 TATCTTCGATCTGCTC
1 TATCTTCGATCTGCTC
74743074 CTTGTAAATG
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 94 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (44 bp):
TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
Found at i:74743325 original size:220 final size:220
Alignment explanation
Indices: 74742960--74743499 Score: 680
Period size: 220 Copynumber: 2.4 Consensus size: 220
74742950 TACAGAGACG
* * * *
74742960 CCAAATCTGTTATCTTTGATCTGGTCTCTGACAATACAGAGATGCCAAATCTACTATCTTCGATC
1 CCAAATCTGTT-TCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAA--T-C-ATCTTAGATC
* * * *
74743025 TGCTCTCTGAC--AATACA---GAGACGCCAAATTTGCTA--TCTTCGATCTGCTCCTTGTAAAT
61 TGCT-TC-AACGTAA-ACACCTGA-AAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTAAAC
* *
74743083 GCAAGGATGCCAAATCATCTTGGATCTACCTCGATGCAAAAACATCTGAAGGTTAGATCTGCTAT
122 GCAAGGATGCCAAATCATCTTGGATCTACCTCAATGCAAAAACATCCGAAGGTTAGATCTGCTAT
* *
74743148 GTCTTCAATCTGCTCTCTGTCAAATATGGAAATA
187 GTCTTCAATCTGCTCTCCGTCAAACATGGAAATA
* ** *
74743182 CCAAATCTGTTTCTTTGATTTGTTCTCTGACAATTTAGAGATGCCAAATCATCTTAGATTTGCTT
1 CCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTT
** *
74743247 CAGTGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATG
66 CAACGTAAACACCTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATG
* ** *
74743312 CCAAATCATCTTGGATCTACTTCAATGTGAAAACATCCGGAGGTTAGATCTGCTATGTCTTCAAT
131 CCAAATCATCTTGGATCTACCTCAATGCAAAAACATCCGAAGGTTAGATCTGCTATGTCTTCAAT
* * *
74743377 CTGCTCTCCGTCGAACATGGAGATG
196 CTGCTCTCCGTCAAACATGGAAATA
*
74743402 CCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 CCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTT
* * *
74743467 CAACGTAAACACCTGAAGGTCAGATCTGCTATG
66 CAACGTAAACACCTGAAAGCCAAATCTGCTATG
74743500 CTTTAGCCTG
Statistics
Matches: 277, Mismatches: 34, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
216 5 0.02
217 14 0.05
218 14 0.05
219 3 0.01
220 197 0.71
221 33 0.12
222 11 0.04
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (220 bp):
CCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTT
CAACGTAAACACCTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATG
CCAAATCATCTTGGATCTACCTCAATGCAAAAACATCCGAAGGTTAGATCTGCTATGTCTTCAAT
CTGCTCTCCGTCAAACATGGAAATA
Found at i:74750987 original size:30 final size:31
Alignment explanation
Indices: 74750951--74751008 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
74750941 TTCCCGAATC
*
74750951 TAGGGGCAAAAGTGTAATTATG-CAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCCAAAAGTT
*
74750981 TAGGGGCAAAAATGTAATTTTGCCAAAA
1 TAGGGGCAAAAATGTAATTATGCCAAAA
74751009 TTCGTATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.41, C:0.09, G:0.24, T:0.26
Consensus pattern (31 bp):
TAGGGGCAAAAATGTAATTATGCCAAAAGTT
Found at i:74755450 original size:40 final size:40
Alignment explanation
Indices: 74755395--74755558 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
74755385 TGAATGATAC
* * *
74755395 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATGT
1 CCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATAT
*
74755435 CCGGGCTAAGACCCGAAGGC-ATTCATGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-ATGCTAG-TGATTATAT
* * * ** *
74755475 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATAT
* * * *
74755515 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATAT
74755555 CCGG
1 CCGG
74755559 TTAAATCCCG
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.03
40 94 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATAT
Found at i:74761430 original size:10 final size:10
Alignment explanation
Indices: 74761415--74761447 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
74761405 TAAAATAAAG
74761415 ATATTTAGAA
1 ATATTTAGAA
74761425 ATATTTAGAA
1 ATATTTAGAA
74761435 ATATTTAGAA
1 ATATTTAGAA
74761445 ATA
1 ATA
74761448 ATATAAGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (10 bp):
ATATTTAGAA
Found at i:74763857 original size:11 final size:12
Alignment explanation
Indices: 74763841--74763905 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 12
74763831 GGTATCATTA
74763841 TTTCTTTTTTT-
1 TTTCTTTTTTTC
74763852 TTTCTTTTTTTC
1 TTTCTTTTTTTC
* *
74763864 TTTCTCCTTTTCC
1 TTTCT-TTTTTTC
**
74763877 CATCTTTCTCTATTC
1 TTTCTTT-T-T-TTC
74763892 TTTCTTTTTTTC
1 TTTCTTTTTTTC
74763904 TT
1 TT
74763906 CTCCTCTTCT
Statistics
Matches: 41, Mismatches: 8, Indels: 9
0.71 0.14 0.16
Matches are distributed among these distances:
11 11 0.27
12 11 0.27
13 10 0.24
14 2 0.05
15 7 0.17
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTCTTTTTTTC
Found at i:74766813 original size:29 final size:29
Alignment explanation
Indices: 74766779--74766853 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
74766769 TACTCGATTT
*
74766779 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
74766808 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
74766837 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
74766854 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:74774658 original size:28 final size:29
Alignment explanation
Indices: 74774627--74774700 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 29
74774617 TACTCGATTT
* *
74774627 CGCACACTTAGTGCCATGCGATT-TAGCC
1 CGCACACTTAGTGCCATGCCATTCGAGCC
** * *
74774655 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCCATTCGAGCC
74774684 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
74774701 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.22, C:0.36, G:0.20, T:0.22
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCCATTCGAGCC
Found at i:74779137 original size:46 final size:42
Alignment explanation
Indices: 74779085--74779195 Score: 107
Period size: 42 Copynumber: 2.5 Consensus size: 42
74779075 CAATAACAAT
* * *
74779085 ATAGCCGAACTTATCTCAATAATCTTCACCCAAAGTGTCATTATAC
1 ATAGCCGAACTTATCTCAATAA-C-GCACACAAAGTGCCA--ATAC
* * *
74779131 ATAGCCGAAGC-CATCTCAATCACGCACACGAAGTGCCAATAC
1 ATAGCCGAA-CTTATCTCAATAACGCACACAAAGTGCCAATAC
*
74779173 ATAGCCGAAGTTATCTCAATAAC
1 ATAGCCGAACTTATCTCAATAAC
74779196 TATTCCTAAT
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
42 23 0.43
44 11 0.20
45 1 0.02
46 18 0.33
47 1 0.02
ACGTcount: A:0.36, C:0.28, G:0.13, T:0.23
Consensus pattern (42 bp):
ATAGCCGAACTTATCTCAATAACGCACACAAAGTGCCAATAC
Found at i:74796294 original size:23 final size:23
Alignment explanation
Indices: 74796268--74796317 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
74796258 ACCCCGTGCA
74796268 ATGCAACATA-ATATTATACATGG-
1 ATGCAACATACATA-TA-ACATGGC
74796291 ATGCAACATACATATAACATGGC
1 ATGCAACATACATATAACATGGC
74796314 ATGC
1 ATGC
74796318 TCAAATACAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 16 0.64
24 3 0.12
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (23 bp):
ATGCAACATACATATAACATGGC
Found at i:74796402 original size:27 final size:26
Alignment explanation
Indices: 74796353--74796468 Score: 97
Period size: 27 Copynumber: 4.3 Consensus size: 26
74796343 AACAAATCTA
* * *
74796353 TCATTTTACCTTACCGGGATATTACAG
1 TCATTTTACCCTACAGGG-TATTTCAG
* *
74796380 TTATTTTACCCTACAGGTGTATTTCGG
1 TCATTTTACCCTACAGG-GTATTTCAG
** *
74796407 TCATTTTACCCTATGGGGGTATTTCAA
1 TCATTTTACCCTA-CAGGGTATTTCAG
** *
74796434 TCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTA-CAGGGTATTTCAG
74796461 TCATTTTA
1 TCATTTTA
74796469 TCACATAAGA
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
27 72 0.96
28 3 0.04
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (26 bp):
TCATTTTACCCTACAGGGTATTTCAG
Found at i:74796416 original size:54 final size:54
Alignment explanation
Indices: 74796353--74796468 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
74796343 AACAAATCTA
* * * *
74796353 TCATTTTACCTTACCGGGATATTACAGTTATTTTACCCTACAGGTGTATTTCGG
1 TCATTTTACCCTACCGGGATATTACAATCATTTTACCCTACAGGGGTATTTCGG
** * * **
74796407 TCATTTTACCCTATGGGGGTATTTCAATCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTACCGGGATATTACAATCATTTTACCCTACAGGGGTATTTCGG
74796461 TCATTTTA
1 TCATTTTA
74796469 TCACATAAGA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (54 bp):
TCATTTTACCCTACCGGGATATTACAATCATTTTACCCTACAGGGGTATTTCGG
Found at i:74796598 original size:30 final size:30
Alignment explanation
Indices: 74796562--74796625 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
74796552 TAGTGAAAAT
*
74796562 GGCCCAAGGCCCATAATACGGGCCCATGTG
1 GGCCCAAGGCCCATAATACGGGCCAATGTG
*
74796592 GGCCCAAGGCCTATAATACGGGCCAATGTG
1 GGCCCAAGGCCCATAATACGGGCCAATGTG
74796622 GGCC
1 GGCC
74796626 TACATGTTCG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.23, C:0.31, G:0.31, T:0.14
Consensus pattern (30 bp):
GGCCCAAGGCCCATAATACGGGCCAATGTG
Found at i:74801588 original size:18 final size:18
Alignment explanation
Indices: 74801565--74801623 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
74801555 TAGCCCATTT
*
74801565 CAGTAATAGTAATCAGTG
1 CAGTAACAGTAATCAGTG
* *
74801583 CAGTAACCA-TGATCAATG
1 CAGTAA-CAGTAATCAGTG
74801601 CAGTAACAGTAATCAGTG
1 CAGTAACAGTAATCAGTG
*
74801619 TAGTA
1 CAGTA
74801624 TGCAAACAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
17 2 0.06
18 30 0.91
19 1 0.03
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.25
Consensus pattern (18 bp):
CAGTAACAGTAATCAGTG
Found at i:74801908 original size:23 final size:22
Alignment explanation
Indices: 74801882--74801926 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
74801872 ACCCCATGCA
74801882 ATGCAACATA-ATATTATACATGG
1 ATGCAACATACATA-TA-ACATGG
74801905 ATGCAACATACATATAACATGG
1 ATGCAACATACATATAACATGG
74801927 CATACTCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.29
23 12 0.57
24 3 0.14
ACGTcount: A:0.44, C:0.16, G:0.13, T:0.27
Consensus pattern (22 bp):
ATGCAACATACATATAACATGG
Found at i:74802012 original size:27 final size:27
Alignment explanation
Indices: 74801982--74802109 Score: 168
Period size: 27 Copynumber: 4.7 Consensus size: 27
74801972 TTTCCTTACC
** **
74801982 AGGGTATTAAAGTCATTTTACCCTACA
1 AGGGTATTTCAGTCATTTTACCCTATG
*
74802009 AGGGTATTTCAGTCATTCTACCCTATG
1 AGGGTATTTCAGTCATTTTACCCTATG
*
74802036 -GGCGTATTTCGGTCATTTTACCCTATG
1 AGG-GTATTTCAGTCATTTTACCCTATG
* *
74802063 AGGGTATTTCGGCCATTTTACCCTATG
1 AGGGTATTTCAGTCATTTTACCCTATG
74802090 AGGGTATTTCAGTCATTTTA
1 AGGGTATTTCAGTCATTTTA
74802110 TCATATAAGG
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
26 2 0.02
27 85 0.96
28 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCAGTCATTTTACCCTATG
Found at i:74804611 original size:22 final size:23
Alignment explanation
Indices: 74804572--74804614 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
74804562 AAAATCCTAC
*
74804572 CCATCCATCCTCTACACTCCACT
1 CCATCCAGCCTCTACACTCCACT
74804595 CCATCCAGCC-CTACACTCCA
1 CCATCCAGCCTCTACACTCCA
74804615 TGTGGGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.23, C:0.53, G:0.02, T:0.21
Consensus pattern (23 bp):
CCATCCAGCCTCTACACTCCACT
Found at i:74804845 original size:24 final size:25
Alignment explanation
Indices: 74804808--74804874 Score: 63
Period size: 23 Copynumber: 2.8 Consensus size: 25
74804798 ACCCCATGCA
*
74804808 ATGCAACATA-ATATCATACATGG-
1 ATGCAAAATACATATCATACATGGC
74804831 ATGCAAAATACATAT-A-ACATGGC
1 ATGCAAAATACATATCATACATGGC
* *
74804854 ATGCTCAAATACA-GTCATACA
1 ATGC-AAAATACATATCATACA
74804875 CATCGTAGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
22 6 0.17
23 15 0.42
24 12 0.33
25 3 0.08
ACGTcount: A:0.45, C:0.19, G:0.12, T:0.24
Consensus pattern (25 bp):
ATGCAAAATACATATCATACATGGC
Found at i:74804950 original size:27 final size:26
Alignment explanation
Indices: 74804920--74805060 Score: 138
Period size: 27 Copynumber: 5.2 Consensus size: 26
74804910 GGTATAAAAG
*
74804920 TCATTTTACCCTACAGGGGTATTTCGA
1 TCATTTTACCCTA-GGGGGTATTTCGA
* *
74804947 TCATTCTACCTTATGGGGGTATTTCGA
1 TCATTTTACCCTA-GGGGGTATTTCGA
* **
74804974 TCATTCTACTTTATGGGGGTATTTCGA
1 TCATTTTACCCTA-GGGGGTATTTCGA
* * *
74805001 ACATTTTACCCTATGAGGGTATTTCGG
1 TCATTTTACCCTA-GGGGGTATTTCGA
* *
74805028 TTATTTTACCCTATGAGGGTATTTCGA
1 TCATTTTACCCTA-GGGGGTATTTCGA
74805055 TCATTT
1 TCATTT
74805061 GATCACATAA
Statistics
Matches: 99, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 99 1.00
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.42
Consensus pattern (26 bp):
TCATTTTACCCTAGGGGGTATTTCGA
Found at i:74805060 original size:54 final size:54
Alignment explanation
Indices: 74804920--74805060 Score: 167
Period size: 54 Copynumber: 2.6 Consensus size: 54
74804910 GGTATAAAAG
* * * *
74804920 TCATTTTACCCTA-CAGGGGTATTTCGATCATTCTACCTTATGGGGGTATTTCGA
1 TCATTTTACCCTATGA-GGGTATTTCGATCATTTTACCCTATGAGGGTATTTCGA
* ** * * *
74804974 TCATTCTACTTTATGGGGGTATTTCGAACATTTTACCCTATGAGGGTATTTCGG
1 TCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGAGGGTATTTCGA
*
74805028 TTATTTTACCCTATGAGGGTATTTCGATCATTT
1 TCATTTTACCCTATGAGGGTATTTCGATCATTT
74805061 GATCACATAA
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.42
Consensus pattern (54 bp):
TCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGAGGGTATTTCGA
Found at i:74805073 original size:27 final size:27
Alignment explanation
Indices: 74805055--74805479 Score: 438
Period size: 27 Copynumber: 15.7 Consensus size: 27
74805045 GGTATTTCGA
74805055 TCATTTGATCACATAAGGGTAAAATCG
1 TCATTTGATCACATAAGGGTAAAATCG
* *
74805082 TCATTTTATCACATAAGGGCAAAATCG
1 TCATTTGATCACATAAGGGTAAAATCG
* * *
74805109 TCATTTTATCACAAAAGGGCAAAATCG
1 TCATTTGATCACATAAGGGTAAAATCG
** * *
74805136 TCATTTTCTCACATAAGGGAAAAATCA
1 TCATTTGATCACATAAGGGTAAAATCG
* * *
74805163 TCATTTTATCA-AGTAAGGGCAAAATCA
1 TCATTTGATCACA-TAAGGGTAAAATCG
* * *
74805190 TCATTTTATCAGATAAGGGCAAAATCG
1 TCATTTGATCACATAAGGGTAAAATCG
* * *
74805217 TCATTTTATCATATAAGGGCAAAATCG
1 TCATTTGATCACATAAGGGTAAAATCG
* *
74805244 TCATTTTATCACATAAGGGCAAAATCG
1 TCATTTGATCACATAAGGGTAAAATCG
* * *
74805271 TCATTTTATCACATAAGGGCAAAATCA
1 TCATTTGATCACATAAGGGTAAAATCG
* * * * *
74805298 TCATTTTATCATATAAAGATAAAATCA
1 TCATTTGATCACATAAGGGTAAAATCG
* * *
74805325 TAATTTTATCACATAAGGGCAAAATCG
1 TCATTTGATCACATAAGGGTAAAATCG
* *
74805352 TCATTTTATCACATAAGGGCAAAATCG
1 TCATTTGATCACATAAGGGTAAAATCG
* * *
74805379 TCATTTTATCACATAAGGGCAAAATTG
1 TCATTTGATCACATAAGGGTAAAATCG
** * *
74805406 TCATTTTTTCACATAAGGGAAAAATCA
1 TCATTTGATCACATAAGGGTAAAATCG
* *
74805433 TCATTTTATCACATAAGGGTAAAATTG
1 TCATTTGATCACATAAGGGTAAAATCG
* *
74805460 TCATTTTATCACATGAGGGT
1 TCATTTGATCACATAAGGGT
74805480 TCAAGTACGC
Statistics
Matches: 362, Mismatches: 34, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
26 1 0.00
27 360 0.99
28 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.32
Consensus pattern (27 bp):
TCATTTGATCACATAAGGGTAAAATCG
Found at i:74805075 original size:81 final size:81
Alignment explanation
Indices: 74804921--74805075 Score: 172
Period size: 81 Copynumber: 1.9 Consensus size: 81
74804911 GTATAAAAGT
* * **
74804921 CATTTTACCCTACAGGGGTATTTCGATCATTCTACCTTATGGGGGTATTTCGATCATTCTACTTT
1 CATTTTACCCTACAGGGGTATTTCGATCATTCTACCCTATGAGGGTATTTCGATCATTCTACTAC
**
74804986 ATGGGGGTATTTCGAA
66 ATAAGGGTATTTCGAA
* * * *
74805002 CATTTTACCCTA-TGAGGGTATTTCGGTTATTTTACCCTATGAGGGTATTTCGATCATT-TGA-T
1 CATTTTACCCTACAG-GGGTATTTCGATCATTCTACCCTATGAGGGTATTTCGATCATTCT-ACT
74805064 CACATAAGGGTA
64 -ACATAAGGGTA
74805076 AAATCGTCAT
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
80 3 0.05
81 58 0.95
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.39
Consensus pattern (81 bp):
CATTTTACCCTACAGGGGTATTTCGATCATTCTACCCTATGAGGGTATTTCGATCATTCTACTAC
ATAAGGGTATTTCGAA
Found at i:74805088 original size:54 final size:54
Alignment explanation
Indices: 74805055--74805478 Score: 517
Period size: 54 Copynumber: 7.9 Consensus size: 54
74805045 GGTATTTCGA
* *
74805055 TCATTTGATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGGCAAAATCG
1 TCATTTGATCACAAAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCG
* * * *
74805109 TCATTTTATCACAAAAGGGCAAAATCGTCATTTTCTCACATAAGGGAAAAATCA
1 TCATTTGATCACAAAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCG
* * * *
74805163 TCATTTTATCA-AGTAAGGGCAAAATCATCATTTTATCAGATAAGGGCAAAATCG
1 TCATTTGATCACA-AAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCG
* * *
74805217 TCATTTTATCATATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCG
1 TCATTTGATCACAAAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCG
* * * * * ** *
74805271 TCATTTTATCACATAAGGGCAAAATCATCATTTTATCATATAAAGATAAAATCA
1 TCATTTGATCACAAAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCG
* * *
74805325 TAATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCG
1 TCATTTGATCACAAAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCG
* * * * * *
74805379 TCATTTTATCACATAAGGGCAAAATTGTCATTTTTTCACATAAGGGAAAAATCA
1 TCATTTGATCACAAAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCG
* * * * *
74805433 TCATTTTATCACATAAGGGTAAAATTGTCATTTTATCACATGAGGG
1 TCATTTGATCACAAAAGGGCAAAATCGTCATTTTATCACATAAGGG
74805479 TTCAAGTACG
Statistics
Matches: 332, Mismatches: 36, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
53 1 0.00
54 330 0.99
55 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (54 bp):
TCATTTGATCACAAAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCG
Found at i:74805115 original size:81 final size:81
Alignment explanation
Indices: 74805055--74805478 Score: 625
Period size: 81 Copynumber: 5.2 Consensus size: 81
74805045 GGTATTTCGA
* *
74805055 TCATTTGATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCA
1 TCATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCA
*
74805120 CAAAAGGGCAAAATCG
66 CATAAGGGCAAAATCG
* * * *
74805136 TCATTTTCTCACATAAGGGAAAAATCATCATTTTATCA-AGTAAGGGCAAAATCATCATTTTATC
1 TCATTTTATCACATAAGGGCAAAATCGTCATTTTATCACA-TAAGGGCAAAATCGTCATTTTATC
*
74805200 AGATAAGGGCAAAATCG
65 ACATAAGGGCAAAATCG
*
74805217 TCATTTTATCATATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCA
1 TCATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCA
*
74805282 CATAAGGGCAAAATCA
66 CATAAGGGCAAAATCG
* * ** * *
74805298 TCATTTTATCATATAAAGATAAAATCATAATTTTATCACATAAGGGCAAAATCGTCATTTTATCA
1 TCATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCA
74805363 CATAAGGGCAAAATCG
66 CATAAGGGCAAAATCG
* * * *
74805379 TCATTTTATCACATAAGGGCAAAATTGTCATTTTTTCACATAAGGGAAAAATCATCATTTTATCA
1 TCATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCA
* *
74805444 CATAAGGGTAAAATTG
66 CATAAGGGCAAAATCG
*
74805460 TCATTTTATCACATGAGGG
1 TCATTTTATCACATAAGGG
74805479 TTCAAGTACG
Statistics
Matches: 308, Mismatches: 33, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
80 1 0.00
81 306 0.99
82 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (81 bp):
TCATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCA
CATAAGGGCAAAATCG
Found at i:74805614 original size:17 final size:18
Alignment explanation
Indices: 74805583--74805616 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
74805573 CACAATGCGA
74805583 GCCCATGTGGGCCCACAT
1 GCCCATGTGGGCCCACAT
74805601 GCCCATGT-GGCCCACA
1 GCCCATGTGGGCCCACA
74805617 AAGCCCAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.18, C:0.41, G:0.26, T:0.15
Consensus pattern (18 bp):
GCCCATGTGGGCCCACAT
Found at i:74805622 original size:18 final size:18
Alignment explanation
Indices: 74805582--74805623 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
74805572 CCACAATGCG
74805582 AGCCCATGTGGGCCCACA
1 AGCCCATGTGGGCCCACA
*
74805600 TGCCCATGT-GGCCCACAA
1 AGCCCATGTGGGCCCAC-A
74805618 AGCCCA
1 AGCCCA
74805624 AAAATGGCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.24, C:0.40, G:0.24, T:0.12
Consensus pattern (18 bp):
AGCCCATGTGGGCCCACA
Found at i:74809275 original size:27 final size:27
Alignment explanation
Indices: 74809151--74809275 Score: 130
Period size: 27 Copynumber: 4.6 Consensus size: 27
74809141 TAAGGGGCAG
* *
74809151 GGGTATTTCGGTCATTCTACCCTATG-
1 GGGTATTTCGATCATTTTACCCTATGA
* * *
74809177 GGAGTATTTC-AGTCATTCTACCTTATGG
1 GG-GTATTTCGA-TCATTTTACCCTATGA
*
74809205 GGGTATTTCAGA-CATTTTATCCTATGA
1 GGGTATTTC-GATCATTTTACCCTATGA
* *
74809232 GGGTATCTCGATGATTTTACCCTATGA
1 GGGTATTTCGATCATTTTACCCTATGA
74809259 GGGTATTTCGATCATTT
1 GGGTATTTCGATCATTT
74809276 GATAACATAA
Statistics
Matches: 82, Mismatches: 11, Indels: 11
0.79 0.11 0.11
Matches are distributed among these distances:
26 4 0.05
27 75 0.91
28 2 0.02
29 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGATCATTTTACCCTATGA
Found at i:74809299 original size:27 final size:27
Alignment explanation
Indices: 74809269--74809419 Score: 177
Period size: 27 Copynumber: 5.8 Consensus size: 27
74809259 GGGTATTTCG
* *
74809269 ATCATTTGATAACATAAGGGTAAAATC
1 ATCATTTTATCACATAAGGGTAAAATC
* *
74809296 ATCATTTTATCAC---A--GCAAAATT
1 ATCATTTTATCACATAAGGGTAAAATC
* * *
74809318 GTCATTTTATCACATAAAGGCAAAATC
1 ATCATTTTATCACATAAGGGTAAAATC
* *
74809345 ATCATTTTATCACGTAAGGGTAAAATT
1 ATCATTTTATCACATAAGGGTAAAATC
*
74809372 GTCATTTTATCACATAAGGGTAAAATC
1 ATCATTTTATCACATAAGGGTAAAATC
74809399 ATCATTTTATCACATAAGGGT
1 ATCATTTTATCACATAAGGGT
74809420 TCAAGTACGC
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
22 18 0.17
24 1 0.01
25 1 0.01
27 84 0.81
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.34
Consensus pattern (27 bp):
ATCATTTTATCACATAAGGGTAAAATC
Found at i:74809384 original size:54 final size:53
Alignment explanation
Indices: 74809270--74809419 Score: 209
Period size: 54 Copynumber: 2.9 Consensus size: 53
74809260 GGTATTTCGA
* * *
74809270 TCATTTGATAACATAAGGGTAAAATCATCATTTTATCAC--A--GCAAAATTG
1 TCATTTTATCACATAAGGGTAAAATCATCATTTTATCACTAAGGGTAAAATTG
* *
74809319 TCATTTTATCACATAAAGGCAAAATCATCATTTTATCACGTAAGGGTAAAATTG
1 TCATTTTATCACATAAGGGTAAAATCATCATTTTATCAC-TAAGGGTAAAATTG
74809373 TCATTTTATCACATAAGGGTAAAATCATCATTTTATCACATAAGGGT
1 TCATTTTATCACATAAGGGTAAAATCATCATTTTATCAC-TAAGGGT
74809420 TCAAGTACGC
Statistics
Matches: 88, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
49 35 0.40
52 1 0.01
54 52 0.59
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.34
Consensus pattern (53 bp):
TCATTTTATCACATAAGGGTAAAATCATCATTTTATCACTAAGGGTAAAATTG
Found at i:74810849 original size:12 final size:12
Alignment explanation
Indices: 74810832--74810883 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
74810822 CCCTTGATTT
74810832 CCTCCTAAAATC
1 CCTCCTAAAATC
* *
74810844 CCTCCTCATATC
1 CCTCCTAAAATC
* * *
74810856 TCTCCTCAACTC
1 CCTCCTAAAATC
*
74810868 CCTCCTACAATC
1 CCTCCTAAAATC
74810880 CCTC
1 CCTC
74810884 AATGACCAAT
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.21, C:0.50, G:0.00, T:0.29
Consensus pattern (12 bp):
CCTCCTAAAATC
Found at i:74816816 original size:47 final size:46
Alignment explanation
Indices: 74816671--74816838 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 46
74816661 CGAGGCCAAT
* **
74816671 GCATGTCCCAGACATGTCTTAC-TCTGGCACTCATAATATGGTTGAA
1 GCATGTCCCAGACATGTCTTACAT-TGGCACTCATAATGTGGCCGAA
* * * * * *
74816717 GCATGTCCCAGACATGTCTTACACTAGCCCTCGT-CTG-GATGCCGAT
1 GCATGTCCCAGACATGTCTTACATTGGCACTCATAATGTG--GCCGAA
*
74816763 GCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAATGTGGCCGAA
1 G-CATGTCCCAGACAT-GTCTTACATTGGCACTCATAATGTGGCCGAA
74816811 GCATGTCCCAGACATGTCTTACATTGGC
1 GCATGTCCCAGACATGTCTTACATTGGC
74816839 GCACAAATCA
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 46 0.46
47 28 0.28
48 21 0.21
49 2 0.02
50 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (46 bp):
GCATGTCCCAGACATGTCTTACATTGGCACTCATAATGTGGCCGAA
Found at i:74822727 original size:48 final size:48
Alignment explanation
Indices: 74822586--74822892 Score: 515
Period size: 48 Copynumber: 6.3 Consensus size: 48
74822576 TGTACAAGAT
* *
74822586 AAATACGTATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCTAATGTG
*
74822636 AAATATGTATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCTAATGTG
74822686 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
74822734 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATTTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
74822782 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
74822830 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
74822878 AAATATGTAGGAGAT
1 AAATATGTATGAGAT
74822893 GTGTGTATAT
Statistics
Matches: 250, Mismatches: 7, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
48 184 0.74
50 66 0.26
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:74828265 original size:47 final size:45
Alignment explanation
Indices: 74827990--74828287 Score: 185
Period size: 47 Copynumber: 6.4 Consensus size: 45
74827980 CCATGTTCTT
* * *
74827990 GACATGGTCTTACACTGGCTCTCATATATGTGTGCTGATGTATGTCCCA
1 GACAT-GTCTTACACTGGCACTCATA-ATGTG-GC-GAAGCATGTCCCA
* * * * * *
74828039 GACATGTCTTACACTAGCA--CA-ACTCTTAGCCAATGCGTGTCCCA
1 GACATGTCTTACACTGGCACTCATAAT-GTGGCGAA-GCATGTCCCA
* * * * *
74828083 GACACGCCTTACACTGGCTATCTC-T-GTCGAGGCCAATGCATGTCCCA
1 GACATGTCTTACACTGGC-A-CTCATAAT-GTGGCGAA-GCATGTCCCA
* * * *
74828130 GACATGTCTTACTCTGGCAATCATAATATGGCTAAAGCATGTCCCA
1 GACATGTCTTACACTGGCACTCATAATGTGGC-GAAGCATGTCCCA
* * * * * *
74828176 GACATGTCTTACACTAGCCCTCGT-CTGGATGCCGATGCCATGTCCCA
1 GACATGTCTTACACTGGCACTCATAAT-G-TGGCGAAG-CATGTCCCA
*
74828223 GACATGGTCTTACACTGGCTCTCATAATGTGGTCGAAGCATGTCCCA
1 GACAT-GTCTTACACTGGCACTCATAATGTGG-CGAAGCATGTCCCA
74828270 GACATGTCTTACACTGGC
1 GACATGTCTTACACTGGC
74828288 GTACAAATCA
Statistics
Matches: 192, Mismatches: 41, Indels: 35
0.72 0.15 0.13
Matches are distributed among these distances:
43 1 0.01
44 26 0.14
45 6 0.03
46 51 0.27
47 68 0.35
48 34 0.18
49 6 0.03
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
GACATGTCTTACACTGGCACTCATAATGTGGCGAAGCATGTCCCA
Found at i:74829801 original size:42 final size:42
Alignment explanation
Indices: 74829747--74829865 Score: 143
Period size: 42 Copynumber: 2.8 Consensus size: 42
74829737 AGGATTATTG
**
74829747 AGATTACATGTAAGACCATATCTGGGATATGGCATCGATATG
1 AGATTACATGTAAGACCATATCTGGGATATGGCATCGATACA
* * * *
74829789 AGACTT-CGTGTAAGACCATAGCTGGGCTATTGGCATGGATACA
1 AGA-TTACATGTAAGACCATATCTGGGATA-TGGCATCGATACA
*
74829832 AGATTACATGTAAGACCATAT-TTGGATATGGCAT
1 AGATTACATGTAAGACCATATCTGGGATATGGCAT
74829866 TGGTATGTTG
Statistics
Matches: 64, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
41 6 0.09
42 30 0.47
43 28 0.44
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (42 bp):
AGATTACATGTAAGACCATATCTGGGATATGGCATCGATACA
Found at i:74832177 original size:16 final size:16
Alignment explanation
Indices: 74832153--74832183 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74832143 TCATATAATG
*
74832153 TTATGTGCCTGACTTA
1 TTATATGCCTGACTTA
74832169 TTATATGCCTGACTT
1 TTATATGCCTGACTT
74832184 GCTTGATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.45
Consensus pattern (16 bp):
TTATATGCCTGACTTA
Done.