Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr13 124041150 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 124041150 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Warning! 335 characters in sequence are not A, C, G, or T File 242 of 410 Found at i:74834072 original size:43 final size:43 Alignment explanation
Indices: 74834024--74834194 Score: 188 Period size: 43 Copynumber: 4.0 Consensus size: 43 74834014 ATTACCGAGA 74834024 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT 1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT * * 74834067 TGTGATTACGTGTAAGACCATGTCTCGGACATTGGCATCAT-TA- 1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT--TGTAT * * * * 74834110 TATGATTTCATGTAAGACCATGTCTAGGACATTGGCATCG-AT 1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT * * * * * 74834152 ATGTGATAACATGTAAAACCATATCTGGGATA-TGGAATTGTAT 1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT 74834195 GAGCTATATG Statistics Matches: 106, Mismatches: 16, Indels: 12 0.79 0.12 0.09 Matches are distributed among these distances: 41 1 0.01 42 6 0.06 43 96 0.91 44 2 0.02 45 1 0.01 ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33 Consensus pattern (43 bp): TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT Found at i:74841522 original size:43 final size:42 Alignment explanation
Indices: 74841424--74841542 Score: 150 Period size: 43 Copynumber: 2.8 Consensus size: 42 74841414 TAGGGTTACT * * * 74841424 GAGATTATGTGTAAGACCATATCTGTGATATGGCATCGATAT 1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC * * 74841466 GAGACTT-CGTGTAAGACCATAGCTGGGCTATTGGCATCGATAC 1 GAGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCGATAC * * 74841509 GAGATTACATGTAAGACCATATCTGGGAGATGGC 1 GAGATTACGTGTAAGACCATATCTGGGATATGGC 74841543 GTTGGTCTGG Statistics Matches: 65, Mismatches: 9, Indels: 6 0.81 0.11 0.08 Matches are distributed among these distances: 42 29 0.45 43 36 0.55 ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28 Consensus pattern (42 bp): GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC Found at i:74856551 original size:25 final size:25 Alignment explanation
Indices: 74856508--74856564 Score: 78 Period size: 25 Copynumber: 2.2 Consensus size: 25 74856498 CCGCTAACTT 74856508 TAGCTTTAGATCAAGGTTGCTAACAC 1 TAGC-TTAGATCAAGGTTGCTAACAC * * * 74856534 TAGCTTAGTTCAATGTTGCTAACTC 1 TAGCTTAGATCAAGGTTGCTAACAC 74856559 TAGCTT 1 TAGCTT 74856565 CAGAGAATCC Statistics Matches: 28, Mismatches: 3, Indels: 1 0.88 0.09 0.03 Matches are distributed among these distances: 25 24 0.86 26 4 0.14 ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37 Consensus pattern (25 bp): TAGCTTAGATCAAGGTTGCTAACAC Found at i:74862862 original size:29 final size:29 Alignment explanation
Indices: 74862829--74862902 Score: 139 Period size: 29 Copynumber: 2.6 Consensus size: 29 74862819 CCTTCGAGCT 74862829 CGCACACTTAGTGCCATATATTTCCAGCA 1 CGCACACTTAGTGCCATATATTTCCAGCA * 74862858 TGCACACTTAGTGCCATATATTTCCAGCA 1 CGCACACTTAGTGCCATATATTTCCAGCA 74862887 CGCACACTTAGTGCCA 1 CGCACACTTAGTGCCA 74862903 ATCTCGTCAC Statistics Matches: 43, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 29 43 1.00 ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27 Consensus pattern (29 bp): CGCACACTTAGTGCCATATATTTCCAGCA Found at i:74862863 original size:58 final size:58 Alignment explanation
Indices: 74862770--74862902 Score: 133 Period size: 58 Copynumber: 2.3 Consensus size: 58 74862760 ATACTCGATT * * * * * 74862770 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC 1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC * * * ** * * 74862828 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC 1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC * 74862886 ACGCACACTTAGTGCCA 1 TCGCACACTTAGTGCCA 74862903 ATCTCGTCAC Statistics Matches: 61, Mismatches: 13, Indels: 2 0.80 0.17 0.03 Matches are distributed among these distances: 57 4 0.07 58 57 0.93 ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25 Consensus pattern (58 bp): TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC Found at i:74870746 original size:29 final size:29 Alignment explanation
Indices: 74870713--74870786 Score: 139 Period size: 29 Copynumber: 2.6 Consensus size: 29 74870703 CCTTCGAGCT 74870713 CGCACACTTAGTGCCATATATTTCCAGCA 1 CGCACACTTAGTGCCATATATTTCCAGCA * 74870742 TGCACACTTAGTGCCATATATTTCCAGCA 1 CGCACACTTAGTGCCATATATTTCCAGCA 74870771 CGCACACTTAGTGCCA 1 CGCACACTTAGTGCCA 74870787 ATCTCGTCAC Statistics Matches: 43, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 29 43 1.00 ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27 Consensus pattern (29 bp): CGCACACTTAGTGCCATATATTTCCAGCA Found at i:74870747 original size:58 final size:58 Alignment explanation
Indices: 74870654--74870786 Score: 133 Period size: 58 Copynumber: 2.3 Consensus size: 58 74870644 ATACTCGATT * * * * * 74870654 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC 1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC * * * ** * * 74870712 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC 1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC * 74870770 ACGCACACTTAGTGCCA 1 TCGCACACTTAGTGCCA 74870787 ATCTCGTCAC Statistics Matches: 61, Mismatches: 13, Indels: 2 0.80 0.17 0.03 Matches are distributed among these distances: 57 4 0.07 58 57 0.93 ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25 Consensus pattern (58 bp): TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC Found at i:74876981 original size:29 final size:29 Alignment explanation
Indices: 74876942--74877020 Score: 106 Period size: 29 Copynumber: 2.7 Consensus size: 29 74876932 CTTAATAATC * 74876942 AACCACGCACACTTAGTGCCATGTACTTT-A 1 AACC-CGCACACTTAGTGCCATGCA-TTTCA * 74876972 AACTCGCACACTTAGTGCCATGCATTTCA 1 AACCCGCACACTTAGTGCCATGCATTTCA * 74877001 AGCCCGCACACTTAGTGCCA 1 AACCCGCACACTTAGTGCCA 74877021 ATCTCACAAC Statistics Matches: 44, Mismatches: 4, Indels: 3 0.86 0.08 0.06 Matches are distributed among these distances: 28 3 0.07 29 38 0.86 30 3 0.07 ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24 Consensus pattern (29 bp): AACCCGCACACTTAGTGCCATGCATTTCA Found at i:74877487 original size:2 final size:2 Alignment explanation
Indices: 74877482--74877509 Score: 56 Period size: 2 Copynumber: 14.0 Consensus size: 2 74877472 TCACACATGC 74877482 AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT 74877510 GTCCGAATGT Statistics Matches: 26, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 26 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:74878167 original size:17 final size:18 Alignment explanation
Indices: 74878130--74878167 Score: 51 Period size: 19 Copynumber: 2.1 Consensus size: 18 74878120 ACTTTTTTTT 74878130 TTCCTTTGTTTTCATCATA 1 TTCCTTTGTTTTCAT-ATA * 74878149 TTCCTTTTTTTTCAT-TA 1 TTCCTTTGTTTTCATATA 74878166 TT 1 TT 74878168 TTATTCTTTC Statistics Matches: 18, Mismatches: 1, Indels: 2 0.86 0.05 0.10 Matches are distributed among these distances: 17 4 0.22 19 14 0.78 ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66 Consensus pattern (18 bp): TTCCTTTGTTTTCATATA Found at i:74880648 original size:20 final size:20 Alignment explanation
Indices: 74880623--74880660 Score: 58 Period size: 20 Copynumber: 1.9 Consensus size: 20 74880613 GTTTATTCGC * 74880623 GATTTTCAATATTTTGTAAA 1 GATTTTCAAAATTTTGTAAA * 74880643 GATTTTTAAAATTTTGTA 1 GATTTTCAAAATTTTGTA 74880661 TTTGGATGTG Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 20 16 1.00 ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53 Consensus pattern (20 bp): GATTTTCAAAATTTTGTAAA Found at i:74882338 original size:28 final size:28 Alignment explanation
Indices: 74882298--74882383 Score: 138 Period size: 28 Copynumber: 3.1 Consensus size: 28 74882288 CACGAAATTA 74882298 CTAAAGAGCAAAATTACCGAAATTACCC 1 CTAAAGAGCAAAATTACCGAAATTACCC * 74882326 CTAAAGAGAAAAATTACCGAAATTACCC 1 CTAAAGAGCAAAATTACCGAAATTACCC * * 74882354 CTAAAGAGCAAAATTATCGATA-TACCC 1 CTAAAGAGCAAAATTACCGAAATTACCC 74882381 CTA 1 CTA 74882384 GGGTTTTAAA Statistics Matches: 54, Mismatches: 4, Indels: 1 0.92 0.07 0.02 Matches are distributed among these distances: 27 8 0.15 28 46 0.85 ACGTcount: A:0.47, C:0.23, G:0.10, T:0.20 Consensus pattern (28 bp): CTAAAGAGCAAAATTACCGAAATTACCC Found at i:74884503 original size:50 final size:50 Alignment explanation
Indices: 74884388--74884486 Score: 189 Period size: 50 Copynumber: 2.0 Consensus size: 50 74884378 GTATCATTCT * 74884388 ACCAATGAATACACCTATGTCTCTACTCGTGGATTCAACTGCTTTGATAC 1 ACCAATGAATACATCTATGTCTCTACTCGTGGATTCAACTGCTTTGATAC 74884438 ACCAATGAATACATCTATGTCTCTACTCGTGGATTCAACTGCTTTGATA 1 ACCAATGAATACATCTATGTCTCTACTCGTGGATTCAACTGCTTTGATA 74884487 GCCAAGACTA Statistics Matches: 48, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 50 48 1.00 ACGTcount: A:0.28, C:0.24, G:0.14, T:0.33 Consensus pattern (50 bp): ACCAATGAATACATCTATGTCTCTACTCGTGGATTCAACTGCTTTGATAC Found at i:74887734 original size:19 final size:20 Alignment explanation
Indices: 74887710--74887752 Score: 70 Period size: 20 Copynumber: 2.2 Consensus size: 20 74887700 CTCCTTTGAA 74887710 TCTTTTTC-CCTTTTTCTTC 1 TCTTTTTCTCCTTTTTCTTC * 74887729 TCTTTTTCTCCTTTTTTTTC 1 TCTTTTTCTCCTTTTTCTTC 74887749 TCTT 1 TCTT 74887753 CTTTTTTCCT Statistics Matches: 22, Mismatches: 1, Indels: 1 0.92 0.04 0.04 Matches are distributed among these distances: 19 8 0.36 20 14 0.64 ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72 Consensus pattern (20 bp): TCTTTTTCTCCTTTTTCTTC Found at i:74887746 original size:12 final size:12 Alignment explanation
Indices: 74887720--74887760 Score: 50 Period size: 12 Copynumber: 3.4 Consensus size: 12 74887710 TCTTTTTCCC 74887720 TTTT-TCTTCTCT 1 TTTTCTCTTCT-T 74887732 TTTTCTCCTT-TT 1 TTTTCT-CTTCTT 74887744 TTTTCTCTTCTT 1 TTTTCTCTTCTT 74887756 TTTTC 1 TTTTC 74887761 CTTAACTCTA Statistics Matches: 26, Mismatches: 0, Indels: 6 0.81 0.00 0.19 Matches are distributed among these distances: 11 3 0.12 12 18 0.69 13 2 0.08 14 3 0.12 ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76 Consensus pattern (12 bp): TTTTCTCTTCTT Found at i:74889787 original size:49 final size:49 Alignment explanation
Indices: 74889717--74889992 Score: 479 Period size: 49 Copynumber: 5.7 Consensus size: 49 74889707 CCCTTCGGGA * 74889717 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTAGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 74889764 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 74889813 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 74889862 CTTATCACACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 1 CTTAT--CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 74889913 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC * * 74889962 CTTATCTC--ATATATACACATTCACATTCATC 1 CTTATCACATATATATACACTTTCACATTCATC 74889993 GCATAAAATC Statistics Matches: 222, Mismatches: 3, Indels: 8 0.95 0.01 0.03 Matches are distributed among these distances: 47 32 0.14 48 1 0.00 49 140 0.63 51 49 0.22 ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34 Consensus pattern (49 bp): CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC Found at i:74889919 original size:100 final size:98 Alignment explanation
Indices: 74889717--74889992 Score: 479 Period size: 100 Copynumber: 2.8 Consensus size: 98 74889707 CCCTTCGGGA * 74889717 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAT 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT 74889780 ACACTTTCACATTCATCACATCGGCCATTAGGC 66 ACACTTTCACATTCATCACATCGGCCATTAGGC 74889813 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATAT 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CACATATAT 74889878 ATACACTTTCACATTCATCACATCGGCCATTAGGC 64 ATACACTTTCACATTCATCACATCGGCCATTAGGC * 74889913 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTC--ATATAT 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT * 74889976 ACACATTCACATTCATC 66 ACACTTTCACATTCATC 74889993 GCATAAAATC Statistics Matches: 173, Mismatches: 3, Indels: 8 0.94 0.02 0.04 Matches are distributed among these distances: 96 32 0.18 97 1 0.01 98 42 0.24 100 98 0.57 ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34 Consensus pattern (98 bp): CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT ACACTTTCACATTCATCACATCGGCCATTAGGC Found at i:74894096 original size:40 final size:40 Alignment explanation
Indices: 74894039--74894399 Score: 593 Period size: 40 Copynumber: 9.1 Consensus size: 40 74894029 CGAATACACG * * * 74894039 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA 1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA * * 74894079 TCACTAGCACAAATGCTCTTC-GGACTTAACCCGGATACA 1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA * 74894118 TCACTAGCAC-AATGCTCTTCAGGACTTAGCCCGGATACA 1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA * * 74894157 TCACTAGCACAAATGCTCTTCGGGACTTAGCCCAGATACA 1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA * 74894197 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA 1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA * 74894237 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA 1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA * 74894277 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA 1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA * 74894317 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA 1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA 74894357 TCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATACA 1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA 74894396 TCAC 1 TCAC 74894400 CCTCAATTCT Statistics Matches: 307, Mismatches: 12, Indels: 5 0.95 0.04 0.02 Matches are distributed among these distances: 38 10 0.03 39 74 0.24 40 223 0.73 ACGTcount: A:0.27, C:0.30, G:0.19, T:0.23 Consensus pattern (40 bp): TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA Found at i:74896007 original size:49 final size:49 Alignment explanation
Indices: 74895821--74896091 Score: 407 Period size: 49 Copynumber: 5.7 Consensus size: 49 74895811 CCCTTCGGGA * * * 74895821 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCTA--C 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCA-T-TAGGC * 74895868 CCTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 74895915 CTTATCACATATATATACAC-TTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 74895963 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 74896012 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC * * 74896061 CTTATCTC--ATATATACACATTCACATTCATC 1 CTTATCACATATATATACACTTTCACATTCATC 74896092 GCATAAAATC Statistics Matches: 210, Mismatches: 7, Indels: 14 0.91 0.03 0.06 Matches are distributed among these distances: 45 2 0.01 46 2 0.01 47 64 0.30 48 48 0.23 49 94 0.45 ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33 Consensus pattern (49 bp): CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC Found at i:74906684 original size:3 final size:3 Alignment explanation
Indices: 74906676--74906705 Score: 60 Period size: 3 Copynumber: 10.0 Consensus size: 3 74906666 ATTGTAAGAT 74906676 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC 1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC 74906706 CCTTTTTATG Statistics Matches: 27, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 27 1.00 ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67 Consensus pattern (3 bp): TTC Found at i:74907397 original size:5 final size:5 Alignment explanation
Indices: 74907375--74907415 Score: 64 Period size: 5 Copynumber: 8.0 Consensus size: 5 74907365 AGAAGACCAG * 74907375 CTTTT CTTCTT CTTTT CTGTT CTTTT CTTTT CTTTT CTTTT 1 CTTTT CTT-TT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT 74907416 TTTGTCTTGT Statistics Matches: 33, Mismatches: 2, Indels: 2 0.89 0.05 0.05 Matches are distributed among these distances: 5 28 0.85 6 5 0.15 ACGTcount: A:0.00, C:0.22, G:0.02, T:0.76 Consensus pattern (5 bp): CTTTT Found at i:74913144 original size:23 final size:23 Alignment explanation
Indices: 74913118--74913163 Score: 65 Period size: 23 Copynumber: 2.0 Consensus size: 23 74913108 GAAACTTTTG * 74913118 GTCCAGTAGTAAAAGTCGTAAAA 1 GTCCAGTAATAAAAGTCGTAAAA * * 74913141 GTCCAGTAATAAAATTTGTAAAA 1 GTCCAGTAATAAAAGTCGTAAAA 74913164 CACTTCCTAC Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 23 20 1.00 ACGTcount: A:0.46, C:0.11, G:0.17, T:0.26 Consensus pattern (23 bp): GTCCAGTAATAAAAGTCGTAAAA Found at i:74917893 original size:39 final size:39 Alignment explanation
Indices: 74917839--74917919 Score: 162 Period size: 39 Copynumber: 2.1 Consensus size: 39 74917829 ATTATAGTCA 74917839 CAAGCATATTCGCCTTCGGGACTTAGCCCGGGTAGAATT 1 CAAGCATATTCGCCTTCGGGACTTAGCCCGGGTAGAATT 74917878 CAAGCATATTCGCCTTCGGGACTTAGCCCGGGTAGAATT 1 CAAGCATATTCGCCTTCGGGACTTAGCCCGGGTAGAATT 74917917 CAA 1 CAA 74917920 ATACTCATGC Statistics Matches: 42, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 39 42 1.00 ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25 Consensus pattern (39 bp): CAAGCATATTCGCCTTCGGGACTTAGCCCGGGTAGAATT Found at i:74923478 original size:227 final size:227 Alignment explanation
Indices: 74923083--74923537 Score: 802 Period size: 227 Copynumber: 2.0 Consensus size: 227 74923073 TTTTGTTACG * * * * 74923083 AAGTGATCACTCTTCTATTAAGTTCTGTTATCTCCTTAACGGTAATCGTACGTGATAGTCCAACT 1 AAGTGATCACTCTTCCATTAAGTTCTGTTACCTCCTTAACGGTAATCCTACATGATAGTCCAACT * * 74923148 AGATTTTAAGTGCTAACTTGGATTTTCAAATGGGATAAGAATAGATTTTTAATTAAATAAATTTA 66 AGATTTTAAGTGCCAACTTGGATTTCCAAATGGGATAAGAATAGATTTTTAATTAAATAAATTTA * 74923213 ATTAATTAAAAATTTTAAACCTTAAATCTTAGTTGAAAAAATCGTTCATCTCCTCTATTTTTTTT 131 ATTAATTAAAAATTTTAAACCTTAAATCTTAGTTGAAAAAATCGTCCATCTCCTCTATTTTTTTT * 74923278 AGCTTTCTTTTTCATTTGACTAAAAAATTTTT 196 AGCTTTCTTTTTCATTTGACTAAAAAAATTTT * * 74923310 AAGTGATCACTCTTCCGTTAAGTTCTGTTACCTCCTTAACGGTAATCCTACATGGTAGTCCAACT 1 AAGTGATCACTCTTCCATTAAGTTCTGTTACCTCCTTAACGGTAATCCTACATGATAGTCCAACT * 74923375 AGATTTTGAGTGCCAACTTGGATTTCCAAATGGGATAAGAATAGATTTTTAATTAAATAAATTTA 66 AGATTTTAAGTGCCAACTTGGATTTCCAAATGGGATAAGAATAGATTTTTAATTAAATAAATTTA 74923440 ATTAATTAAAAATTTTAAACCTTAAATCTTAGTTGAAAAAATCGTCCATCTCCTCTATTTTTTTT 131 ATTAATTAAAAATTTTAAACCTTAAATCTTAGTTGAAAAAATCGTCCATCTCCTCTATTTTTTTT * 74923505 TGCTTTCTTTTTCATTTGACTAAAAAAATTTT 196 AGCTTTCTTTTTCATTTGACTAAAAAAATTTT 74923537 A 1 A 74923538 TTATCATCAA Statistics Matches: 216, Mismatches: 12, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 227 216 1.00 ACGTcount: A:0.33, C:0.15, G:0.11, T:0.42 Consensus pattern (227 bp): AAGTGATCACTCTTCCATTAAGTTCTGTTACCTCCTTAACGGTAATCCTACATGATAGTCCAACT AGATTTTAAGTGCCAACTTGGATTTCCAAATGGGATAAGAATAGATTTTTAATTAAATAAATTTA ATTAATTAAAAATTTTAAACCTTAAATCTTAGTTGAAAAAATCGTCCATCTCCTCTATTTTTTTT AGCTTTCTTTTTCATTTGACTAAAAAAATTTT Found at i:74923644 original size:34 final size:34 Alignment explanation
Indices: 74923596--74923664 Score: 120 Period size: 34 Copynumber: 2.0 Consensus size: 34 74923586 GAGGTTCCAG 74923596 GTATCTCTTCTTTACTGACAAATTTATGTTCTAA 1 GTATCTCTTCTTTACTGACAAATTTATGTTCTAA * * 74923630 GTATGTCTTCTTTACTGACAAATTTATTTTCTAA 1 GTATCTCTTCTTTACTGACAAATTTATGTTCTAA 74923664 G 1 G 74923665 ACTTAAAATC Statistics Matches: 33, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 34 33 1.00 ACGTcount: A:0.26, C:0.16, G:0.10, T:0.48 Consensus pattern (34 bp): GTATCTCTTCTTTACTGACAAATTTATGTTCTAA Found at i:74926012 original size:16 final size:16 Alignment explanation
Indices: 74925991--74926022 Score: 64 Period size: 16 Copynumber: 2.0 Consensus size: 16 74925981 AGTCTAATAG 74925991 TGATTACTTCAATCAT 1 TGATTACTTCAATCAT 74926007 TGATTACTTCAATCAT 1 TGATTACTTCAATCAT 74926023 CTTACTTTAT Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 16 1.00 ACGTcount: A:0.31, C:0.19, G:0.06, T:0.44 Consensus pattern (16 bp): TGATTACTTCAATCAT Found at i:74928204 original size:13 final size:13 Alignment explanation
Indices: 74928186--74928217 Score: 55 Period size: 13 Copynumber: 2.5 Consensus size: 13 74928176 GTGCAGTTAG 74928186 CTTGCTGTTCGGT 1 CTTGCTGTTCGGT * 74928199 CTTGCTGTTCTGT 1 CTTGCTGTTCGGT 74928212 CTTGCT 1 CTTGCT 74928218 TAATTTTGGT Statistics Matches: 18, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 13 18 1.00 ACGTcount: A:0.00, C:0.25, G:0.25, T:0.50 Consensus pattern (13 bp): CTTGCTGTTCGGT Found at i:74931056 original size:5 final size:5 Alignment explanation
Indices: 74931046--74931085 Score: 62 Period size: 5 Copynumber: 7.6 Consensus size: 5 74931036 AAGAAATTGT 74931046 TATTA TATTA TATTA TATTA TATTATA TATTA TATTA TAT 1 TATTA TATTA TATTA TATTA TA-T-TA TATTA TATTA TAT 74931086 AAATAAGTAA Statistics Matches: 33, Mismatches: 0, Indels: 4 0.89 0.00 0.11 Matches are distributed among these distances: 5 27 0.82 6 2 0.06 7 4 0.12 ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60 Consensus pattern (5 bp): TATTA Found at i:74931076 original size:12 final size:12 Alignment explanation
Indices: 74931049--74931086 Score: 62 Period size: 12 Copynumber: 3.3 Consensus size: 12 74931039 AAATTGTTAT 74931049 TATATTATA-T- 1 TATATTATATTA 74931059 TATATTATATTA 1 TATATTATATTA 74931071 TATATTATATTA 1 TATATTATATTA 74931083 TATA 1 TATA 74931087 AATAAGTAAA Statistics Matches: 26, Mismatches: 0, Indels: 2 0.93 0.00 0.07 Matches are distributed among these distances: 10 9 0.35 11 1 0.04 12 16 0.62 ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58 Consensus pattern (12 bp): TATATTATATTA Found at i:74931932 original size:18 final size:18 Alignment explanation
Indices: 74931911--74931966 Score: 69 Period size: 18 Copynumber: 3.2 Consensus size: 18 74931901 TGGTTATTAT * 74931911 TGAATAATTAATTGTTAC 1 TGAATAAATAATTGTTAC * * * 74931929 TGAATAACTGACTGTTAC 1 TGAATAAATAATTGTTAC 74931947 TGAATAAATAATTGTT-C 1 TGAATAAATAATTGTTAC 74931964 TGA 1 TGA 74931967 TTGTTAATGA Statistics Matches: 32, Mismatches: 6, Indels: 1 0.82 0.15 0.03 Matches are distributed among these distances: 17 4 0.12 18 28 0.88 ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39 Consensus pattern (18 bp): TGAATAAATAATTGTTAC Found at i:74931951 original size:36 final size:35 Alignment explanation
Indices: 74931890--74931966 Score: 100 Period size: 36 Copynumber: 2.2 Consensus size: 35 74931880 TCAGGAGAAA ** * * 74931890 TTCTGAATAACTGGTTATTATTGAATAATTAATTG 1 TTCTGAATAACTGACTATTACTGAATAAATAATTG * 74931925 TTACTGAATAACTGACTGTTACTGAATAAATAATTG 1 TT-CTGAATAACTGACTATTACTGAATAAATAATTG 74931961 TTCTGA 1 TTCTGA 74931967 TTGTTAATGA Statistics Matches: 36, Mismatches: 5, Indels: 2 0.84 0.12 0.05 Matches are distributed among these distances: 35 6 0.17 36 30 0.83 ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42 Consensus pattern (35 bp): TTCTGAATAACTGACTATTACTGAATAAATAATTG Found at i:74935225 original size:29 final size:29 Alignment explanation
Indices: 74935191--74935293 Score: 154 Period size: 29 Copynumber: 3.6 Consensus size: 29 74935181 TAATCAGCCG ** * 74935191 CGCACACTTAGTGCCATATACTTT-AAACT 1 CGCACACTTAGTGCCATGCA-TTTCAAGCT 74935220 CGCACACTTAGTGCCATGCATTTCAAGCT 1 CGCACACTTAGTGCCATGCATTTCAAGCT 74935249 CGCACACTTAGTGCCATGCATTTCAAGCT 1 CGCACACTTAGTGCCATGCATTTCAAGCT * 74935278 CGCACACTCAGTGCCA 1 CGCACACTTAGTGCCA 74935294 ATCTCTCAAC Statistics Matches: 69, Mismatches: 4, Indels: 2 0.92 0.05 0.03 Matches are distributed among these distances: 28 3 0.04 29 66 0.96 ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26 Consensus pattern (29 bp): CGCACACTTAGTGCCATGCATTTCAAGCT Found at i:74939161 original size:40 final size:40 Alignment explanation
Indices: 74939012--74939169 Score: 171 Period size: 40 Copynumber: 4.0 Consensus size: 40 74939002 TCGAATGATG * * * * 74939012 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAGGTGACTATA 1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGA-GTTACTAAA ** 74939052 TCCGGACTAAGATCCGAAGGCATTTGTGTTAGTTACTAAA 1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA * 74939092 TCTGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA 1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA * * 74939132 TCC-GAGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTA 1 TCCGGA-CTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA 74939170 TAACCGGCTA Statistics Matches: 104, Mismatches: 10, Indels: 8 0.85 0.08 0.07 Matches are distributed among these distances: 39 3 0.03 40 92 0.88 41 9 0.09 ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28 Consensus pattern (40 bp): TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA Found at i:74939864 original size:35 final size:35 Alignment explanation
Indices: 74939818--74939923 Score: 194 Period size: 35 Copynumber: 3.0 Consensus size: 35 74939808 CACTTGCCTC 74939818 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA 1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA 74939853 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA 1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA * * 74939888 CTCCCACTCTCCCATGCTGTCTGCCGCCAGCACCA 1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA 74939923 T 1 T 74939924 CACACACCCC Statistics Matches: 68, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 35 68 1.00 ACGTcount: A:0.16, C:0.49, G:0.12, T:0.23 Consensus pattern (35 bp): TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA Found at i:74940368 original size:12 final size:13 Alignment explanation
Indices: 74940350--74940383 Score: 68 Period size: 13 Copynumber: 2.6 Consensus size: 13 74940340 TCCAGCATCA 74940350 AAAAAAAATTTCC 1 AAAAAAAATTTCC 74940363 AAAAAAAATTTCC 1 AAAAAAAATTTCC 74940376 AAAAAAAA 1 AAAAAAAA 74940384 AAACCAAAAA Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 21 1.00 ACGTcount: A:0.71, C:0.12, G:0.00, T:0.18 Consensus pattern (13 bp): AAAAAAAATTTCC Found at i:74940538 original size:16 final size:16 Alignment explanation
Indices: 74940512--74940555 Score: 52 Period size: 16 Copynumber: 2.8 Consensus size: 16 74940502 TATATATATT * * 74940512 AAAACATAAAATATAA 1 AAAAAATAAAATAAAA * 74940528 ATAAAATAAAATAAAA 1 AAAAAATAAAATAAAA * 74940544 AAAAAAAAAAAT 1 AAAAAATAAAAT 74940556 TTTTTTTTAC Statistics Matches: 23, Mismatches: 5, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 16 23 1.00 ACGTcount: A:0.82, C:0.02, G:0.00, T:0.16 Consensus pattern (16 bp): AAAAAATAAAATAAAA Found at i:74941227 original size:15 final size:15 Alignment explanation
Indices: 74941194--74941274 Score: 51 Period size: 15 Copynumber: 5.4 Consensus size: 15 74941184 ATCATTTCTA * * 74941194 ATATGTATA-TATAT 1 ATATATATATTATGT * 74941208 ATATATATGTGTAT-T 1 ATATATATAT-TATGT 74941223 ATATATATATTATGT 1 ATATATATATTATGT ** 74941238 ATATATGCCATTA-GTT 1 ATATAT-ATATTATG-T * * 74941254 ATATATTTCTTATGT 1 ATATATATATTATGT 74941269 ATATAT 1 ATATAT 74941275 TCTTAAATAC Statistics Matches: 53, Mismatches: 8, Indels: 11 0.74 0.11 0.15 Matches are distributed among these distances: 14 10 0.19 15 28 0.53 16 15 0.28 ACGTcount: A:0.36, C:0.04, G:0.09, T:0.52 Consensus pattern (15 bp): ATATATATATTATGT Found at i:74941250 original size:27 final size:27 Alignment explanation
Indices: 74941198--74941260 Score: 69 Period size: 27 Copynumber: 2.4 Consensus size: 27 74941188 TTTCTAATAT * * 74941198 GTATATATA-TATATATATGTGTATTA 1 GTATATATATTATATATATATGCATTA * 74941224 -TATATATATTATGTATATATGCCATTA 1 GTATATATATTATATATATATG-CATTA 74941251 GT-TATATATT 1 GTATATATATT 74941261 TCTTATGTAT Statistics Matches: 31, Mismatches: 3, Indels: 5 0.79 0.08 0.13 Matches are distributed among these distances: 25 8 0.26 26 10 0.32 27 12 0.39 28 1 0.03 ACGTcount: A:0.37, C:0.03, G:0.10, T:0.51 Consensus pattern (27 bp): GTATATATATTATATATATATGCATTA Found at i:74941259 original size:2 final size:2 Alignment explanation
Indices: 74941194--74941243 Score: 50 Period size: 2 Copynumber: 26.0 Consensus size: 2 74941184 ATCATTTCTA * * * 74941194 AT AT GT AT AT AT AT AT AT AT AT GT GT AT -T AT AT AT AT AT -T 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT * 74941234 AT GT AT AT AT 1 AT AT AT AT AT 74941244 GCCATTAGTT Statistics Matches: 40, Mismatches: 6, Indels: 4 0.80 0.12 0.08 Matches are distributed among these distances: 1 2 0.05 2 38 0.95 ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52 Consensus pattern (2 bp): AT Found at i:74941407 original size:18 final size:17 Alignment explanation
Indices: 74941386--74941436 Score: 50 Period size: 18 Copynumber: 2.9 Consensus size: 17 74941376 TAACTATTAT * 74941386 TATATTAGTGTATATTTA 1 TATATTA-TGTATATATA * 74941404 TATACATATGTATATATA 1 TATA-TTATGTATATATA * 74941422 TATA-TATATATATAT 1 TATATTATGTATATAT 74941437 TTTGCACATA Statistics Matches: 29, Mismatches: 3, Indels: 4 0.81 0.08 0.11 Matches are distributed among these distances: 16 10 0.34 18 17 0.59 19 2 0.07 ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51 Consensus pattern (17 bp): TATATTATGTATATATA Found at i:74941419 original size:2 final size:2 Alignment explanation
Indices: 74941396--74941436 Score: 55 Period size: 2 Copynumber: 20.5 Consensus size: 2 74941386 TATATTAGTG * * * 74941396 TA TA TT TA TA TA CA TA TG TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 74941437 TTTGCACATA Statistics Matches: 33, Mismatches: 6, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 2 33 1.00 ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51 Consensus pattern (2 bp): TA Found at i:74949785 original size:70 final size:70 Alignment explanation
Indices: 74949698--74950286 Score: 980 Period size: 70 Copynumber: 8.2 Consensus size: 70 74949688 CAAGTGACAG * 74949698 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT 1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT 74949763 GTTTC 66 GTTTC 74949768 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT 1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT 74949833 GTTTC 66 GTTTC * 74949838 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT 1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT 74949903 GTTTC 66 GTTTC * 74949908 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC 1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTC 74949973 AATTTATGTTTC 59 AATTTATGTTTC * 74949985 AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT 1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT 74950050 GTTTC 66 GTTTC * 74950055 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT 1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT 74950120 GTTTC 66 GTTTC * 74950125 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC 1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTC 74950190 AATTTATGTTTC 59 AATTTATGTTTC * 74950202 AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT 1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT 74950267 GTTTC 66 GTTTC 74950272 AAAAATCAACTCATA 1 -AAAATCAACTCATA 74950287 GGTGAGTTGA Statistics Matches: 492, Mismatches: 12, Indels: 29 0.92 0.02 0.05 Matches are distributed among these distances: 70 336 0.68 71 18 0.04 72 2 0.00 75 2 0.00 76 4 0.01 77 130 0.26 ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31 Consensus pattern (70 bp): AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT GTTTC Found at i:74949984 original size:77 final size:77 Alignment explanation
Indices: 74949892--74950264 Score: 603 Period size: 77 Copynumber: 5.0 Consensus size: 77 74949882 GTTGAGGTAA * 74949892 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGA 1 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA 74949957 GGTAATTTCAAT 66 GGTAATTTCAAT * 74949969 TTTCAATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA 1 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA 74950034 GG-----T-AA- 66 GGTAATTTCAAT * 74950039 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGA 1 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA 74950104 GG-----T-AA- 66 GGTAATTTCAAT * 74950109 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGA 1 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA 74950174 GGTAATTTCAAT 66 GGTAATTTCAAT * 74950186 TTTCAATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA 1 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA 74950251 GGTAATTTCAAT 66 GGTAATTTCAAT 74950263 TT 1 TT 74950265 ATGTTTCAAA Statistics Matches: 281, Mismatches: 8, Indels: 14 0.93 0.03 0.05 Matches are distributed among these distances: 70 133 0.47 71 2 0.01 72 1 0.00 75 1 0.00 76 2 0.01 77 142 0.51 ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33 Consensus pattern (77 bp): TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA GGTAATTTCAAT Found at i:74950066 original size:217 final size:217 Alignment explanation
Indices: 74949698--74950286 Score: 1093 Period size: 217 Copynumber: 2.7 Consensus size: 217 74949688 CAAGTGACAG * * 74949698 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTC 1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC * 74949756 AATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA 66 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA 74949821 ATTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTG 131 ATTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTG 74949886 AGGTAATTTCAATTTATGTTTC 196 AGGTAATTTCAATTTATGTTTC 74949908 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC 1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC 74949973 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA 66 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA 74950038 ATTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTG 131 ATTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTG 74950103 AGGTAATTTCAATTTATGTTTC 196 AGGTAATTTCAATTTATGTTTC 74950125 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC 1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC 74950190 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA 66 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA 74950255 ATTTCAATTTATGTTTCAAAAATCAACTCATA 131 ATTTCAATTTATGTTTC-AAAATCAACTCATA 74950287 GGTGAGTTGA Statistics Matches: 368, Mismatches: 3, Indels: 8 0.97 0.01 0.02 Matches are distributed among these distances: 210 49 0.13 215 1 0.00 216 2 0.01 217 302 0.82 218 14 0.04 ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31 Consensus pattern (217 bp): AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA ATTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTG AGGTAATTTCAATTTATGTTTC Found at i:74950071 original size:147 final size:140 Alignment explanation
Indices: 74949698--74950286 Score: 980 Period size: 147 Copynumber: 4.1 Consensus size: 140 74949688 CAAGTGACAG * 74949698 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT 1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT 74949763 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA 66 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA 74949828 TTTATGTTTC 131 TTTATGTTTC * 74949838 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT 1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT * 74949903 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAA 66 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA 74949968 TTTTCAATTTATGTTTC 125 -TTTCAATTTATGTTTC * 74949985 AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT 1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT * 74950050 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAA 66 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA 74950115 TTTATGTTTC 131 TTTATGTTTC * 74950125 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC 1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTC * 74950190 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA 59 AATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA 74950255 ATTTCAATTTATGTTTC 124 ATTTCAATTTATGTTTC 74950272 AAAAATCAACTCATA 1 -AAAATCAACTCATA 74950287 GGTGAGTTGA Statistics Matches: 423, Mismatches: 11, Indels: 22 0.93 0.02 0.05 Matches are distributed among these distances: 140 183 0.43 141 2 0.00 142 1 0.00 145 2 0.00 146 4 0.01 147 217 0.51 148 14 0.03 ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31 Consensus pattern (140 bp): AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA TTTATGTTTC Found at i:74950340 original size:147 final size:142 Alignment explanation
Indices: 74949718--74950387 Score: 686 Period size: 147 Copynumber: 4.7 Consensus size: 142 74949708 CACATTGCGA * * 74949718 GAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AATTT-CAATTTATGTTTCAAAATCAA 1 GAGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCAATTTCCAATTTATGTTTCAAAATCAA 74949776 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTCAAA 66 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTCAAA 74949841 ATCAACTCATATT 131 ATCAACTCA-ATT * * * 74949854 GCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGG-----T-AATTT-CAATTTATGTTTCAAAA 1 ----GAGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCAATTTCCAATTTATGTTTCAAAA * 74949912 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTCAATT 62 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTCAATT * 74949977 TATGTTTCAAAATCAACTCATATGGCGA 120 TATGTTTCAAAATCAACTCA-AT----T * * 74950005 GAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AATTT-CAATTTATGTTTCAAAATCAA 1 GAGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCAATTTCCAATTTATGTTTCAAAATCAA * 74950063 CTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTCAAA 66 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTCAAA 74950128 ATCAACTCATATT 131 ATCAACTCA-ATT * * 74950141 GCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTCAATTTATGTTTCAAAA 1 ----GAGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCAATTTCCAATTTATGTTTCAAAA * 74950206 TCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTT 62 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTT 74950271 CAAAAATCAACTC-A-T 127 C-AAAATCAACTCAATT **** * * * 74950286 -AGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAGTCTCTACTTTCCAATTCCTGTTTTT 1 GAGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCA------A-TTTCCAATT--TATGTTT * 74950350 CAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCT 57 C-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT 74950388 GTTAATTTCT Statistics Matches: 476, Mismatches: 21, Indels: 56 0.86 0.04 0.10 Matches are distributed among these distances: 140 192 0.40 141 2 0.00 142 1 0.00 145 3 0.01 146 9 0.02 147 218 0.46 148 11 0.02 149 6 0.01 150 34 0.07 ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32 Consensus pattern (142 bp): GAGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCAATTTCCAATTTATGTTTCAAAATCAA CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTCAAA ATCAACTCAATT Found at i:74950429 original size:54 final size:52 Alignment explanation
Indices: 74950337--74950491 Score: 194 Period size: 54 Copynumber: 3.0 Consensus size: 52 74950327 TCTACTTTCC * * 74950337 AATTCCTGTTTTTCAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTGTT 1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC--TT * * 74950391 AATTTCTGTCTTTCAAAAAGCAACTCATATTGCGAGAGGTGAGTTGTA-CC-T 1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCCTT ** 74950442 --TTT-TGTTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTT 1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT 74950491 A 1 A 74950492 GGTCATATGT Statistics Matches: 89, Mismatches: 8, Indels: 12 0.82 0.07 0.11 Matches are distributed among these distances: 47 1 0.01 48 38 0.43 49 4 0.04 51 1 0.01 54 44 0.49 55 1 0.01 ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35 Consensus pattern (52 bp): AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT Found at i:74951243 original size:35 final size:35 Alignment explanation
Indices: 74951197--74951302 Score: 194 Period size: 35 Copynumber: 3.0 Consensus size: 35 74951187 CACTTGCCTC 74951197 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA 1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA 74951232 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA 1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA * * 74951267 CTCCCACTCTCCCATGCTGTCTGCCGCCAGCACCA 1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA 74951302 T 1 T 74951303 CACACACCCC Statistics Matches: 68, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 35 68 1.00 ACGTcount: A:0.16, C:0.49, G:0.12, T:0.23 Consensus pattern (35 bp): TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA Found at i:74951759 original size:13 final size:13 Alignment explanation
Indices: 74951737--74951773 Score: 65 Period size: 14 Copynumber: 2.8 Consensus size: 13 74951727 AATTCCAGCA 74951737 CCAAAAAAAATTT 1 CCAAAAAAAATTT 74951750 CCAGAAAAAAATTT 1 CCA-AAAAAAATTT 74951764 CCAAAAAAAA 1 CCAAAAAAAA 74951774 AAACCAAAAA Statistics Matches: 23, Mismatches: 0, Indels: 2 0.92 0.00 0.08 Matches are distributed among these distances: 13 10 0.43 14 13 0.57 ACGTcount: A:0.65, C:0.16, G:0.03, T:0.16 Consensus pattern (13 bp): CCAAAAAAAATTT Found at i:74951774 original size:14 final size:14 Alignment explanation
Indices: 74951739--74951787 Score: 64 Period size: 14 Copynumber: 3.6 Consensus size: 14 74951729 TTCCAGCACC 74951739 AAAAAAAATTTCCA 1 AAAAAAAATTTCCA * 74951753 GAAAAAAATTTCCA 1 AAAAAAAATTTCCA ** 74951767 AAAAAAAA-AACCA 1 AAAAAAAATTTCCA 74951780 AAAAAAAA 1 AAAAAAAA 74951788 ACAATAGAAC Statistics Matches: 31, Mismatches: 4, Indels: 1 0.86 0.11 0.03 Matches are distributed among these distances: 13 11 0.35 14 20 0.65 ACGTcount: A:0.73, C:0.12, G:0.02, T:0.12 Consensus pattern (14 bp): AAAAAAAATTTCCA Found at i:74951776 original size:33 final size:31 Alignment explanation
Indices: 74951706--74951776 Score: 72 Period size: 33 Copynumber: 2.2 Consensus size: 31 74951696 GAGGGGAAGC ** 74951706 AAAAAAAAAATCCAGCAAAAAAATTCCAGCACC 1 AAAAAAAAAATCCAGCAAAAAAATTCCA--AAA ** 74951739 AAAAAAAATTTCCAG-AAAAAAATTTCCAAAA 1 AAAAAAAAAATCCAGCAAAAAAA-TTCCAAAA 74951770 AAAAAAA 1 AAAAAAA 74951777 CCAAAAAAAA Statistics Matches: 33, Mismatches: 4, Indels: 4 0.80 0.10 0.10 Matches are distributed among these distances: 31 8 0.24 32 7 0.21 33 18 0.55 ACGTcount: A:0.66, C:0.17, G:0.04, T:0.13 Consensus pattern (31 bp): AAAAAAAAAATCCAGCAAAAAAATTCCAAAA Found at i:74951780 original size:13 final size:13 Alignment explanation
Indices: 74951764--74951788 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 74951754 AAAAAAATTT 74951764 CCAAAAAAAAAAA 1 CCAAAAAAAAAAA 74951777 CCAAAAAAAAAA 1 CCAAAAAAAAAA 74951789 CAATAGAACG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00 Consensus pattern (13 bp): CCAAAAAAAAAAA Found at i:74952064 original size:11 final size:11 Alignment explanation
Indices: 74952035--74952084 Score: 57 Period size: 11 Copynumber: 4.5 Consensus size: 11 74952025 CGACCGAATT * * 74952035 TCCCTTCCCCC 1 TCCCTTCTCTC 74952046 TCCCTTCTCTC 1 TCCCTTCTCTC 74952057 TCCCTTCTCTC 1 TCCCTTCTCTC 74952068 TTCCC-TCTCTC 1 -TCCCTTCTCTC * 74952079 TTCCTT 1 TCCCTT 74952085 TTTTTCTTTC Statistics Matches: 34, Mismatches: 3, Indels: 4 0.83 0.07 0.10 Matches are distributed among these distances: 10 3 0.09 11 27 0.79 12 4 0.12 ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44 Consensus pattern (11 bp): TCCCTTCTCTC Found at i:74952631 original size:23 final size:23 Alignment explanation
Indices: 74952603--74952655 Score: 97 Period size: 23 Copynumber: 2.3 Consensus size: 23 74952593 ATTTCTAATA 74952603 TATATATATATATATATATTATG 1 TATATATATATATATATATTATG * 74952626 TGTATATATATATATATATTATG 1 TATATATATATATATATATTATG 74952649 TATATAT 1 TATATAT 74952656 GCCATTAGTT Statistics Matches: 28, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 23 28 1.00 ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53 Consensus pattern (23 bp): TATATATATATATATATATTATG Found at i:74952671 original size:2 final size:2 Alignment explanation
Indices: 74952600--74952655 Score: 71 Period size: 2 Copynumber: 29.0 Consensus size: 2 74952590 ATCATTTCTA * * 74952600 AT AT AT AT AT AT AT AT AT AT AT -T AT GT GT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT * 74952641 AT AT -T AT GT AT AT AT 1 AT AT AT AT AT AT AT AT 74952656 GCCATTAGTT Statistics Matches: 48, Mismatches: 4, Indels: 4 0.86 0.07 0.07 Matches are distributed among these distances: 1 2 0.04 2 46 0.96 ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52 Consensus pattern (2 bp): AT Found at i:74960567 original size:40 final size:40 Alignment explanation
Indices: 74960420--74960605 Score: 209 Period size: 40 Copynumber: 4.7 Consensus size: 40 74960410 TCGAATGATG * * * * 74960420 TCCGGGCTAAGTCCCGAAGGC-TTTGTACTAAGTGACTATA 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA * 74960460 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA 1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA * * 74960500 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA 1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA * * 74960540 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA * * 74960581 -CCGGGCTATGTCCCGAAGGTATTTG 1 TCCGGGCTAAGTCCCGAAGGCATTTG 74960606 AACGAGTAGC Statistics Matches: 129, Mismatches: 13, Indels: 8 0.86 0.09 0.05 Matches are distributed among these distances: 39 1 0.01 40 119 0.92 41 9 0.07 ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26 Consensus pattern (40 bp): TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA Found at i:74962920 original size:29 final size:29 Alignment explanation
Indices: 74962888--74963019 Score: 237 Period size: 29 Copynumber: 4.5 Consensus size: 29 74962878 ATAGTGAATC 74962888 CGCACACTTAGTGCTATATATTTTCAGCT 1 CGCACACTTAGTGCTATATATTTTCAGCT 74962917 CGCACACTTAGTGCTATATAATTTTCAGCT 1 CGCACACTTAGTGCTATAT-ATTTTCAGCT * 74962947 CCCACACTTAGTGCTATATATTTTCAGCT 1 CGCACACTTAGTGCTATATATTTTCAGCT * 74962976 CGCACACTTAGTGCTATATATTTTCAGTT 1 CGCACACTTAGTGCTATATATTTTCAGCT 74963005 CGCACACTTAGTGCT 1 CGCACACTTAGTGCT 74963020 GTACAATTTT Statistics Matches: 99, Mismatches: 3, Indels: 2 0.95 0.03 0.02 Matches are distributed among these distances: 29 71 0.72 30 28 0.28 ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37 Consensus pattern (29 bp): CGCACACTTAGTGCTATATATTTTCAGCT Found at i:74963029 original size:59 final size:59 Alignment explanation
Indices: 74962888--74963019 Score: 239 Period size: 59 Copynumber: 2.3 Consensus size: 59 74962878 ATAGTGAATC 74962888 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT 1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT * * 74962947 CCCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGTT 1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT 74963005 CGCACACTTAGTGCT 1 CGCACACTTAGTGCT 74963020 GTACAATTTT Statistics Matches: 70, Mismatches: 3, Indels: 1 0.95 0.04 0.01 Matches are distributed among these distances: 58 23 0.33 59 47 0.67 ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37 Consensus pattern (59 bp): CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT Found at i:74963508 original size:19 final size:18 Alignment explanation
Indices: 74963484--74963519 Score: 54 Period size: 18 Copynumber: 1.9 Consensus size: 18 74963474 CCCCCTTTTT * 74963484 CTTTTCTTATTTTATTCCC 1 CTTTTCTT-TTTAATTCCC 74963503 CTTTTCTTTTTAATTCC 1 CTTTTCTTTTTAATTCC 74963520 TTTCTTTATT Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 18 8 0.50 19 8 0.50 ACGTcount: A:0.11, C:0.25, G:0.00, T:0.64 Consensus pattern (18 bp): CTTTTCTTTTTAATTCCC Found at i:74966569 original size:40 final size:40 Alignment explanation
Indices: 74966488--74966708 Score: 322 Period size: 40 Copynumber: 5.6 Consensus size: 40 74966478 AAACCAAGTA ** * * * 74966488 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG 1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAATTG * 74966527 CCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAATTG 1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG 74966567 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG 1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG * * * 74966607 CCTTCGGGACTTGGCCCGATTATAGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG * 74966647 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATTG 1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG 74966687 CCTTCGGG-CTTAGCCCGGTTAT 1 CCTTCGGGACTTAGCCCGGTTAT 74966709 CAATCCGAAT Statistics Matches: 165, Mismatches: 15, Indels: 4 0.90 0.08 0.02 Matches are distributed among these distances: 39 26 0.16 40 139 0.84 ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27 Consensus pattern (40 bp): CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG Found at i:74968650 original size:57 final size:56 Alignment explanation
Indices: 74968542--74968654 Score: 136 Period size: 57 Copynumber: 2.0 Consensus size: 56 74968532 TTATTCACAT * * ** * * 74968542 TTTGACAACATAAATATGCGCATTAAGATACATTATGACAGTAGCTGTAAATTACA 1 TTTGACAACATAAATATGCACATTAAGAGACATTATGACAACAACTATAAATTACA * * * 74968598 TTTGAACAGCATAAATATGCACTTTAAGAGACATTTTGACAACAACTATAAATTACA 1 TTTG-ACAACATAAATATGCACATTAAGAGACATTATGACAACAACTATAAATTACA 74968655 AGTGCAAATT Statistics Matches: 47, Mismatches: 9, Indels: 1 0.82 0.16 0.02 Matches are distributed among these distances: 56 4 0.09 57 43 0.91 ACGTcount: A:0.42, C:0.15, G:0.12, T:0.30 Consensus pattern (56 bp): TTTGACAACATAAATATGCACATTAAGAGACATTATGACAACAACTATAAATTACA Found at i:74972670 original size:38 final size:38 Alignment explanation
Indices: 74972622--74972821 Score: 310 Period size: 38 Copynumber: 5.3 Consensus size: 38 74972612 GGCTCAAAGG * * * 74972622 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA 1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA * 74972660 CCCGGATATAATACCAGCGCGAAGCCTGCGGGATTTAA 1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA * * * 74972698 CCCGGACATATTACCAGCACGAAGCCTGTGGGATTTAA 1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA * * * 74972736 CCCGAACATATTACCAGCACGAAGCCTGCGGGATTTAA 1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA 74972774 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA 1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA 74972812 CCCGGATATA 1 CCCGGATATA 74972822 CATCAAATAT Statistics Matches: 149, Mismatches: 13, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 38 149 1.00 ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20 Consensus pattern (38 bp): CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA Found at i:74974179 original size:2 final size:2 Alignment explanation
Indices: 74974172--74974199 Score: 56 Period size: 2 Copynumber: 14.0 Consensus size: 2 74974162 CACTTTCAAA 74974172 AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT 74974200 TCGACTTTCA Statistics Matches: 26, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 26 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:74980151 original size:52 final size:52 Alignment explanation
Indices: 74980058--74980197 Score: 138 Period size: 52 Copynumber: 2.7 Consensus size: 52 74980048 ATATGTACTT * * * * 74980058 CCATGTAAGACCATAGCTGGGCTATGACACCGATACAATGTGAT-TCAAGATC 1 CCATATAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGATAT-AAGATC * *** * * 74980110 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGATGTGATAATATGATT 1 CCATATAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGAT-ATAAGATC * * * 74980163 CCATATAAGACCATATCTAGGATATGGCATCGGTA 1 CCATATAAGACCATAGCTGGGCTATGGCATCGGTA 74980198 TGTTATGTGA Statistics Matches: 71, Mismatches: 15, Indels: 3 0.80 0.17 0.03 Matches are distributed among these distances: 52 36 0.51 53 34 0.48 54 1 0.01 ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26 Consensus pattern (52 bp): CCATATAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGATATAAGATC Found at i:74981043 original size:20 final size:20 Alignment explanation
Indices: 74980990--74981046 Score: 105 Period size: 20 Copynumber: 2.9 Consensus size: 20 74980980 CCCCATGGAC * 74980990 AGGCCACACGGGCATGTCCT 1 AGGCCACACGGGCGTGTCCT 74981010 AGGCCACACGGGCGTGTCCT 1 AGGCCACACGGGCGTGTCCT 74981030 AGGCCACACGGGCGTGT 1 AGGCCACACGGGCGTGT 74981047 GCCCCTATTT Statistics Matches: 36, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 20 36 1.00 ACGTcount: A:0.18, C:0.33, G:0.35, T:0.14 Consensus pattern (20 bp): AGGCCACACGGGCGTGTCCT Found at i:74982897 original size:53 final size:54 Alignment explanation
Indices: 74982820--74982928 Score: 211 Period size: 53 Copynumber: 2.0 Consensus size: 54 74982810 TAGTAGTATA 74982820 AATCATAACTATATAGTTACATAATTTATA-TTTTTTAAAATATTAATTACTAT 1 AATCATAACTATATAGTTACATAATTTATATTTTTTTAAAATATTAATTACTAT 74982873 AATCATAACTATATAGTTACATAATTTATATTTTTTTAAAATATTAATTACTAT 1 AATCATAACTATATAGTTACATAATTTATATTTTTTTAAAATATTAATTACTAT 74982927 AA 1 AA 74982929 AAAAATTATT Statistics Matches: 55, Mismatches: 0, Indels: 1 0.98 0.00 0.02 Matches are distributed among these distances: 53 30 0.55 54 25 0.45 ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47 Consensus pattern (54 bp): AATCATAACTATATAGTTACATAATTTATATTTTTTTAAAATATTAATTACTAT Found at i:74984815 original size:19 final size:17 Alignment explanation
Indices: 74984781--74984836 Score: 58 Period size: 19 Copynumber: 3.0 Consensus size: 17 74984771 TTTCGCAAAT 74984781 AATTATTAAAAATTATAA 1 AATT-TTAAAAATTATAA * 74984799 GATATTTAAATAATTATCAA 1 AAT-TTTAAA-AATTAT-AA 74984819 AATTTTAAAAAATTATAA 1 AATTTT-AAAAATTATAA 74984837 TGGAAGGTTA Statistics Matches: 32, Mismatches: 2, Indels: 8 0.76 0.05 0.19 Matches are distributed among these distances: 18 9 0.28 19 16 0.50 20 7 0.22 ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39 Consensus pattern (17 bp): AATTTTAAAAATTATAA Found at i:74990380 original size:15 final size:15 Alignment explanation
Indices: 74990357--74990397 Score: 57 Period size: 15 Copynumber: 2.8 Consensus size: 15 74990347 TTTAAAAATT * 74990357 TGAAA-TTAGCTTGA 1 TGAAATTTAGCATGA 74990371 TGAAATTTAGCATGA 1 TGAAATTTAGCATGA * 74990386 CGAAATTTAGCA 1 TGAAATTTAGCA 74990398 AAATGTGAAT Statistics Matches: 24, Mismatches: 2, Indels: 1 0.89 0.07 0.04 Matches are distributed among these distances: 14 5 0.21 15 19 0.79 ACGTcount: A:0.39, C:0.10, G:0.20, T:0.32 Consensus pattern (15 bp): TGAAATTTAGCATGA Found at i:74993508 original size:64 final size:64 Alignment explanation
Indices: 74993409--74993528 Score: 172 Period size: 64 Copynumber: 1.9 Consensus size: 64 74993399 CAAAACTGTA 74993409 GGGTATACTGACTTATCAACATGGCCAAGTCACACGCCCGTGTGCT-AGGCCGTGTGCCATTTAG 1 GGGTATACTGACTTATCAACATGGCCAAGTCACACGCCCGTGTG-TGAGGCCGTGTGCCATTTAG * * * * 74993473 GGGTATACTGACTTGTACCACATGG-CTAGTCACACGCCTGTGTGTGAGGCCGTGTG 1 GGGTATACTGACTTAT-CAACATGGCCAAGTCACACGCCCGTGTGTGAGGCCGTGTG 74993529 GAGCATACTG Statistics Matches: 50, Mismatches: 4, Indels: 4 0.86 0.07 0.07 Matches are distributed among these distances: 63 1 0.02 64 42 0.84 65 7 0.14 ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26 Consensus pattern (64 bp): GGGTATACTGACTTATCAACATGGCCAAGTCACACGCCCGTGTGTGAGGCCGTGTGCCATTTAG Found at i:74994611 original size:24 final size:24 Alignment explanation
Indices: 74994579--74994624 Score: 74 Period size: 24 Copynumber: 1.9 Consensus size: 24 74994569 ATACGAGTTG * 74994579 AAACGGTAAGCTCTAATGAGCTAA 1 AAACAGTAAGCTCTAATGAGCTAA * 74994603 AAACAGTAAGCTCTTATGAGCT 1 AAACAGTAAGCTCTAATGAGCT 74994625 GATATATCGA Statistics Matches: 20, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 24 20 1.00 ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24 Consensus pattern (24 bp): AAACAGTAAGCTCTAATGAGCTAA Found at i:74995574 original size:12 final size:12 Alignment explanation
Indices: 74995557--74995582 Score: 52 Period size: 12 Copynumber: 2.2 Consensus size: 12 74995547 ATTAACTTAA 74995557 TACATAAATTAC 1 TACATAAATTAC 74995569 TACATAAATTAC 1 TACATAAATTAC 74995581 TA 1 TA 74995583 TATTAACCTT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 14 1.00 ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35 Consensus pattern (12 bp): TACATAAATTAC Found at i:74995969 original size:5 final size:5 Alignment explanation
Indices: 74995961--74995987 Score: 54 Period size: 5 Copynumber: 5.4 Consensus size: 5 74995951 TTATAATGTT 74995961 AATAA AATAA AATAA AATAA AATAA AA 1 AATAA AATAA AATAA AATAA AATAA AA 74995988 GATGATGCAT Statistics Matches: 22, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 22 1.00 ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19 Consensus pattern (5 bp): AATAA Found at i:74996602 original size:2 final size:2 Alignment explanation
Indices: 74996595--74996632 Score: 76 Period size: 2 Copynumber: 19.0 Consensus size: 2 74996585 AAATGAATCA 74996595 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 74996633 GTTATTGTGC Statistics Matches: 36, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 36 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:74999114 original size:40 final size:40 Alignment explanation
Indices: 74999040--74999185 Score: 175 Period size: 40 Copynumber: 3.6 Consensus size: 40 74999030 CCGCACCAAG * * * * * * 74999040 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT 1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT * * 74999080 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT 1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT * * * * 74999120 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT 1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT * 74999160 GCCTTCGGGTCTTAACCCGGATATAA 1 GCCTTCGGGTCTTAGCCCGGATATAA 74999186 TTTTCAGCAT Statistics Matches: 90, Mismatches: 16, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 40 90 1.00 ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26 Consensus pattern (40 bp): GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT Found at i:74999200 original size:40 final size:40 Alignment explanation
Indices: 74999072--74999223 Score: 164 Period size: 40 Copynumber: 3.8 Consensus size: 40 74999062 ATCACGATTT * * * * * 74999072 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA 74999112 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA 1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA * * ** 74999152 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A * * * 74999192 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT 74999224 CATTCAATTT Statistics Matches: 97, Mismatches: 12, Indels: 6 0.84 0.10 0.05 Matches are distributed among these distances: 39 4 0.04 40 91 0.94 41 2 0.02 ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29 Consensus pattern (40 bp): GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA Found at i:75007224 original size:40 final size:40 Alignment explanation
Indices: 75007150--75007295 Score: 175 Period size: 40 Copynumber: 3.6 Consensus size: 40 75007140 CCGCACCAAG * * * * * * 75007150 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT 1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT * * 75007190 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT 1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT * * * * 75007230 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT 1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT * 75007270 GCCTTCGGGTCTTAACCCGGATATAA 1 GCCTTCGGGTCTTAGCCCGGATATAA 75007296 TTTTCAGCAT Statistics Matches: 90, Mismatches: 16, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 40 90 1.00 ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26 Consensus pattern (40 bp): GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT Found at i:75007310 original size:40 final size:40 Alignment explanation
Indices: 75007182--75007333 Score: 164 Period size: 40 Copynumber: 3.8 Consensus size: 40 75007172 ATCACGATTT * * * * * 75007182 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA 75007222 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA 1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA * * ** 75007262 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A * * * 75007302 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT 75007334 CATTCAATTT Statistics Matches: 97, Mismatches: 12, Indels: 6 0.84 0.10 0.05 Matches are distributed among these distances: 39 4 0.04 40 91 0.94 41 2 0.02 ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29 Consensus pattern (40 bp): GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA Found at i:75010063 original size:19 final size:17 Alignment explanation
Indices: 75010039--75010082 Score: 52 Period size: 17 Copynumber: 2.5 Consensus size: 17 75010029 TGGGCCACGT * 75010039 TGGGCCGAATTGGGCCGTG 1 TGGGCCCAA-TGGG-CGTG * 75010058 TGGGCCCAATGGGCTTG 1 TGGGCCCAATGGGCGTG 75010075 TGGGCCCA 1 TGGGCCCA 75010083 TACGAATAAA Statistics Matches: 23, Mismatches: 2, Indels: 2 0.85 0.07 0.07 Matches are distributed among these distances: 17 11 0.48 18 4 0.17 19 8 0.35 ACGTcount: A:0.11, C:0.25, G:0.43, T:0.20 Consensus pattern (17 bp): TGGGCCCAATGGGCGTG Found at i:75010581 original size:26 final size:27 Alignment explanation
Indices: 75010543--75010613 Score: 72 Period size: 27 Copynumber: 2.7 Consensus size: 27 75010533 CCGATTTGTG 75010543 AAATGACTGAAATA-CCTCGAGTTATA 1 AAATGACTGAAATACCCTCGAGTTATA * * * * 75010569 AAATTACTTAAATACCCTTGATTTATA 1 AAATGACTGAAATACCCTCGAGTTATA * * * 75010596 AAATAACTGTATTACCCT 1 AAATGACTGAAATACCCT 75010614 TGTCGGGTAA Statistics Matches: 36, Mismatches: 8, Indels: 1 0.80 0.18 0.02 Matches are distributed among these distances: 26 12 0.33 27 24 0.67 ACGTcount: A:0.41, C:0.17, G:0.08, T:0.34 Consensus pattern (27 bp): AAATGACTGAAATACCCTCGAGTTATA Found at i:75010624 original size:27 final size:27 Alignment explanation
Indices: 75010594--75010737 Score: 157 Period size: 27 Copynumber: 5.3 Consensus size: 27 75010584 CCTTGATTTA * * * * 75010594 TAAAATAACTGTATTACCCTTGTCGGG 1 TAAAATGACCGTAATACCCTTGTAGGG * * 75010621 TAAAATGACCGTAATGGCCC-TATAGGG 1 TAAAATGACCGTAAT-ACCCTTGTAGGG ** * 75010648 TAAAATGACTATAATGCCCTTGTAGGG 1 TAAAATGACCGTAATACCCTTGTAGGG * 75010675 TAAAATGACCGTAATACCCCTGTAGGG 1 TAAAATGACCGTAATACCCTTGTAGGG * 75010702 TAAAATGACCGTAATGTCCC-TGTAGGG 1 TAAAATGACCGTAAT-ACCCTTGTAGGG 75010729 TAAAATGAC 1 TAAAATGAC 75010738 AATTATGCCA Statistics Matches: 100, Mismatches: 14, Indels: 6 0.83 0.12 0.05 Matches are distributed among these distances: 26 4 0.04 27 90 0.90 28 6 0.06 ACGTcount: A:0.33, C:0.18, G:0.22, T:0.26 Consensus pattern (27 bp): TAAAATGACCGTAATACCCTTGTAGGG Found at i:75010668 original size:54 final size:55 Alignment explanation
Indices: 75010610--75010737 Score: 188 Period size: 54 Copynumber: 2.4 Consensus size: 55 75010600 AACTGTATTA * ** * 75010610 CCCTTGTCGGGTAAAATGACCGTAATGGCCCTATAGGGTAAAATGACTATAATG- 1 CCCTTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATGACCATAATGT * * 75010664 CCCTTGTAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACCGTAATGT 1 CCCTTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATGACCATAATGT 75010719 CCC-TGTAGGGTAAAATGAC 1 CCCTTGTAGGGTAAAATGAC 75010738 AATTATGCCA Statistics Matches: 67, Mismatches: 6, Indels: 2 0.89 0.08 0.03 Matches are distributed among these distances: 54 64 0.96 55 3 0.04 ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25 Consensus pattern (55 bp): CCCTTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATGACCATAATGT Found at i:75010703 original size:81 final size:81 Alignment explanation
Indices: 75010594--75010751 Score: 226 Period size: 81 Copynumber: 2.0 Consensus size: 81 75010584 CCTTGATTTA * * * * * 75010594 TAAAATAACTGTATTACCCTTGTCGGGTAAAATGACCGTAATGGCCCTATAGGGTAAAATGACTA 1 TAAAATAACCGTAATACCCCTGTAGGGTAAAATGACCGTAATGGCCCTATAGGGTAAAATGACAA * 75010659 TAATGCCCTTGTAGGG 66 TAATGCCATTGTAGGG * * * 75010675 TAAAATGACCGTAATACCCCTGTAGGGTAAAATGACCGTAATGTCCCTGTAGGGTAAAATGACAA 1 TAAAATAACCGTAATACCCCTGTAGGGTAAAATGACCGTAATGGCCCTATAGGGTAAAATGACAA * 75010740 TTATGCCATTGT 66 TAATGCCATTGT 75010752 GTTCCGTATG Statistics Matches: 67, Mismatches: 10, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 81 67 1.00 ACGTcount: A:0.33, C:0.18, G:0.22, T:0.28 Consensus pattern (81 bp): TAAAATAACCGTAATACCCCTGTAGGGTAAAATGACCGTAATGGCCCTATAGGGTAAAATGACAA TAATGCCATTGTAGGG Found at i:75015062 original size:34 final size:33 Alignment explanation
Indices: 75015019--75015090 Score: 81 Period size: 34 Copynumber: 2.2 Consensus size: 33 75015009 CATATCAGTA * * * 75015019 ACAGTTCAGTTTCAGTTAGGGCCGTAGCCTATT 1 ACAGTTCAGTATCAATTAGGGCCGTAGCCCATT * * 75015052 ACAGTATCAGTATCAATTTGGGCCTTAGCCCATT 1 ACAGT-TCAGTATCAATTAGGGCCGTAGCCCATT * 75015086 TCAGT 1 ACAGT 75015091 GTCGGTAACA Statistics Matches: 32, Mismatches: 6, Indels: 1 0.82 0.15 0.03 Matches are distributed among these distances: 33 5 0.16 34 27 0.84 ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33 Consensus pattern (33 bp): ACAGTTCAGTATCAATTAGGGCCGTAGCCCATT Found at i:75019831 original size:43 final size:43 Alignment explanation
Indices: 75019738--75019904 Score: 169 Period size: 43 Copynumber: 3.9 Consensus size: 43 75019728 GATTACCGAG * * * 75019738 ATGTGATTACATATAAGACAATGTCTGGGCCATTGGCAT--TAT 1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT-T * * 75019780 ATTGTGATTACGTGTAAGACCATGTTTGGGACATTGGCATCGTT 1 A-TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTT * * * ** * 75019824 ATATGATTTCGTGTAAGACCATGTCTGGGACATTGATATCGAT 1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTT * * * 75019867 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT 1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT 75019905 TGTACGAGCT Statistics Matches: 103, Mismatches: 19, Indels: 6 0.80 0.15 0.05 Matches are distributed among these distances: 42 5 0.05 43 95 0.92 44 2 0.02 45 1 0.01 ACGTcount: A:0.29, C:0.14, G:0.24, T:0.34 Consensus pattern (43 bp): ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTT Found at i:75036436 original size:40 final size:40 Alignment explanation
Indices: 75036344--75036533 Score: 199 Period size: 40 Copynumber: 4.8 Consensus size: 40 75036334 CGAATGGTGT * * * 75036344 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAG-TACTAAAT 1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA * * 75036382 CCGGG-TCAATTCCCGAAGGCATTCGTGCGAGTTACCAAAA 1 CCGGGCT-AAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA * * 75036422 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT 1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA * * * * 75036462 CCGGGCTAATTCCCGAAGGCAATT-GTGCGAATCACTATAA 1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAAA * * * * 75036502 CCGGGCTATGTCCCGAAGACAATCGAGCGAGT 1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT 75036534 CGCTATATCC Statistics Matches: 126, Mismatches: 20, Indels: 10 0.81 0.13 0.06 Matches are distributed among these distances: 37 1 0.01 38 17 0.13 39 10 0.08 40 94 0.75 41 4 0.03 ACGTcount: A:0.26, C:0.25, G:0.26, T:0.22 Consensus pattern (40 bp): CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA Found at i:75036475 original size:80 final size:80 Alignment explanation
Indices: 75036344--75036559 Score: 235 Period size: 80 Copynumber: 2.7 Consensus size: 80 75036334 CGAATGGTGT * * 75036344 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAG-TACTAAATCCGGGTCAATTCCCGAAGGC-ATTC 1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTCAATTCCCGAAGGCAATT- * * 75036406 GTGCGAGTTACCAAAA 65 GTGCGAATCACCAAAA * 75036422 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAATT 1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTC-AATTCCCGAAGGCAATT * * 75036486 GTGCGAATCACTATAA 65 GTGCGAATCACCAAAA * * * * ** * * * 75036502 CCGGGCTATGTCCCGAAGACAATCGAGCGAGTCGCTATATCCGGTTAAATT-CCGAAGG 1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTCAATTCCCGAAGG 75036560 TACGTGATTC Statistics Matches: 116, Mismatches: 17, Indels: 9 0.82 0.12 0.06 Matches are distributed among these distances: 78 19 0.16 79 16 0.14 80 78 0.67 81 3 0.03 ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23 Consensus pattern (80 bp): CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTCAATTCCCGAAGGCAATTG TGCGAATCACCAAAA Found at i:75044470 original size:40 final size:40 Alignment explanation
Indices: 75044305--75044483 Score: 188 Period size: 40 Copynumber: 4.5 Consensus size: 40 75044295 TCGAATGGTG * 75044305 TCCGGGCTAAGTCCCGAAGGCAATCGTGC-AAGTTACTAAA 1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAA-TTACTAAA * * * 75044345 TCCGGG-TCAATTCCCGAAGGCATTCGTGCGAGTTACCAAAA 1 TCCGGGCT-AAGTCCCGAAGGCATTCGTGCGAATTA-CTAAA * * 75044386 T-CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA 1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAATTACTAAA * * 75044425 TCCGGGCTAATTCCCGAAGGCAATT-GTGCGAATCACTATAA 1 TCCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAATTACTA-AA * * 75044466 -CCGGGCTATGCCCCGAAG 1 TCCGGGCTAAGTCCCGAAG 75044484 ACAATCGAGC Statistics Matches: 119, Mismatches: 13, Indels: 14 0.82 0.09 0.10 Matches are distributed among these distances: 39 6 0.05 40 101 0.85 41 12 0.10 ACGTcount: A:0.27, C:0.26, G:0.26, T:0.22 Consensus pattern (40 bp): TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAATTACTAAA Found at i:75044481 original size:80 final size:80 Alignment explanation
Indices: 75044306--75044522 Score: 244 Period size: 80 Copynumber: 2.7 Consensus size: 80 75044296 CGAATGGTGT * 75044306 CCGGGCTAAGTCCCGAAGGCAATCGTGCAAGTTACTAAATCCGGGTCAATTCCCGAAGGCATTCG 1 CCGGGCTAAGTCCCGAAGGCAATCGTGCGAGTTACTAAATCCGGGTCAATTCCCGAAGGCATTCG * * 75044371 TGCGAGTTACCAAAA 66 TGCGAATCACCAAAA * * * 75044386 TCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAATT 1 CCGGGCTAAGTCCCGAAGGCAATCGTGCGAGTTACTAAATCCGGGTC-AATTCCCGAAGGC-ATT * * 75044450 -GTGCGAATCACTATAA 64 CGTGCGAATCACCAAAA * * * * * * * * 75044466 CCGGGCTATGCCCCGAAGACAATCGAGCGAG-TGCTATATCCGGTTAAATT-CCGAAGG 1 CCGGGCTAAGTCCCGAAGGCAATCGTGCGAGTTACTAAATCCGGGTCAATTCCCGAAGG 75044523 TACGTGATTC Statistics Matches: 115, Mismatches: 19, Indels: 8 0.81 0.13 0.06 Matches are distributed among these distances: 78 7 0.06 79 15 0.13 80 90 0.78 81 3 0.03 ACGTcount: A:0.28, C:0.25, G:0.26, T:0.22 Consensus pattern (80 bp): CCGGGCTAAGTCCCGAAGGCAATCGTGCGAGTTACTAAATCCGGGTCAATTCCCGAAGGCATTCG TGCGAATCACCAAAA Found at i:75053444 original size:15 final size:16 Alignment explanation
Indices: 75053414--75053444 Score: 55 Period size: 16 Copynumber: 2.0 Consensus size: 16 75053404 CGAAATTTCA 75053414 AGGGTTTTTCATAGCT 1 AGGGTTTTTCATAGCT 75053430 AGGGTTTTTCA-AGCT 1 AGGGTTTTTCATAGCT 75053445 TCCAAGCTTC Statistics Matches: 15, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 15 4 0.27 16 11 0.73 ACGTcount: A:0.19, C:0.13, G:0.26, T:0.42 Consensus pattern (16 bp): AGGGTTTTTCATAGCT Found at i:75054386 original size:53 final size:53 Alignment explanation
Indices: 75054190--75054393 Score: 131 Period size: 53 Copynumber: 3.8 Consensus size: 53 75054180 AGGGTTTAAG * * * * * * * 75054190 GATACCAAGTAAGACCATACCAAGGCATTG-CATTGGTAAGTTTTACAAGGCAAT 1 GATACCACGTAAGACCATGCCAAGACA-TGACAATGGTAAG-TTCATAAGGCAAA * * * * * * * * * * 75054244 GAAATCATGTAAGACCATGTCAAGACACGGCATTGATAAATCACTATAAGGCAAA 1 GATACCACGTAAGACCATGCCAAGACATGACAATGGTAAGT-TC-ATAAGGCAAA * * * * * * * 75054299 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGTAAG 1 GATACCACGTAAGACCATGCCAAGACATGACAATGGTAAGTTCATAAGGCAAA * * 75054352 GATACCACGTAAGATCATGTCAAGACATGACAATGGTAAGTT 1 GATACCACGTAAGACCATGCCAAGACATGACAATGGTAAGTT 75054394 TAAAGAGGAA Statistics Matches: 114, Mismatches: 33, Indels: 7 0.74 0.21 0.05 Matches are distributed among these distances: 53 45 0.39 54 30 0.26 55 39 0.34 ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22 Consensus pattern (53 bp): GATACCACGTAAGACCATGCCAAGACATGACAATGGTAAGTTCATAAGGCAAA Found at i:75058176 original size:25 final size:24 Alignment explanation
Indices: 75058143--75058190 Score: 60 Period size: 25 Copynumber: 2.0 Consensus size: 24 75058133 TTATAACATG * * * 75058143 AAAATGACCGTTTTGCCCCTAGGT 1 AAAATGACCATTATACCCCTAGGT 75058167 AAAAGTGACCATTATACCCCTAGG 1 AAAA-TGACCATTATACCCCTAGG 75058191 GTTTATATAT Statistics Matches: 20, Mismatches: 3, Indels: 1 0.83 0.12 0.04 Matches are distributed among these distances: 24 4 0.20 25 16 0.80 ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25 Consensus pattern (24 bp): AAAATGACCATTATACCCCTAGGT Found at i:75058241 original size:9 final size:9 Alignment explanation
Indices: 75058229--75058285 Score: 51 Period size: 9 Copynumber: 5.9 Consensus size: 9 75058219 TTTGATAAAC 75058229 ATGATATGT 1 ATGATATGT * 75058238 ATGATATGCAC 1 ATGATATG--T * 75058249 ATGACATGT 1 ATGATATGT * 75058258 ATGATATGCAC 1 ATGATATG--T 75058269 ATGATATGT 1 ATGATATGT 75058278 ATGATATG 1 ATGATATG 75058286 CACACGAGAT Statistics Matches: 38, Mismatches: 6, Indels: 8 0.73 0.12 0.15 Matches are distributed among these distances: 9 23 0.61 11 15 0.39 ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35 Consensus pattern (9 bp): ATGATATGT Found at i:75058252 original size:20 final size:20 Alignment explanation
Indices: 75058227--75058289 Score: 117 Period size: 20 Copynumber: 3.1 Consensus size: 20 75058217 ATTTTGATAA 75058227 ACATGATATGTATGATATGC 1 ACATGATATGTATGATATGC * 75058247 ACATGACATGTATGATATGC 1 ACATGATATGTATGATATGC 75058267 ACATGATATGTATGATATGC 1 ACATGATATGTATGATATGC 75058287 ACA 1 ACA 75058290 CGAGATGTTC Statistics Matches: 41, Mismatches: 2, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 20 41 1.00 ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32 Consensus pattern (20 bp): ACATGATATGTATGATATGC Found at i:75058399 original size:24 final size:24 Alignment explanation
Indices: 75058342--75058493 Score: 220 Period size: 24 Copynumber: 6.4 Consensus size: 24 75058332 GGAGGAAGTG 75058342 CAAAAGGGCTTATGCCCCAGTTAT 1 CAAAAGGGCTTATGCCCCAGTTAT * 75058366 -TAAAGGGCTTATGCCCCAGTTAT 1 CAAAAGGGCTTATGCCCCAGTTAT 75058389 CAAAAGGGCTTATGCCCCAGTTAT 1 CAAAAGGGCTTATGCCCCAGTTAT 75058413 CAAAAGGGCTTATG-CCCAGTTAT 1 CAAAAGGGCTTATGCCCCAGTTAT * 75058436 -TAAAGGGCTTATGCCCCAGTTAT 1 CAAAAGGGCTTATGCCCCAGTTAT * * * 75058459 TAAAAGGGCTTTTGCCCTAGTTAT 1 CAAAAGGGCTTATGCCCCAGTTAT * 75058483 TAAAAGAGGCT 1 CAAAAG-GGCT 75058494 AGGCCTCCAG Statistics Matches: 118, Mismatches: 6, Indels: 7 0.90 0.05 0.05 Matches are distributed among these distances: 22 12 0.10 23 40 0.34 24 62 0.53 25 4 0.03 ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28 Consensus pattern (24 bp): CAAAAGGGCTTATGCCCCAGTTAT Found at i:75058456 original size:70 final size:71 Alignment explanation
Indices: 75058342--75058493 Score: 252 Period size: 70 Copynumber: 2.1 Consensus size: 71 75058332 GGAGGAAGTG 75058342 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC 1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC 75058407 AGTTAT 66 AGTTAT * * * 75058413 CAAAAGGGCTTATG-CCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCT 1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC 75058477 AGTTAT 66 AGTTAT * 75058483 TAAAAGAGGCT 1 CAAAAG-GGCT 75058494 AGGCCTCCAG Statistics Matches: 76, Mismatches: 4, Indels: 2 0.93 0.05 0.02 Matches are distributed among these distances: 70 58 0.76 71 18 0.24 ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28 Consensus pattern (71 bp): CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC AGTTAT Found at i:75059731 original size:2 final size:2 Alignment explanation
Indices: 75059724--75059751 Score: 56 Period size: 2 Copynumber: 14.0 Consensus size: 2 75059714 CGGCTCTAGC 75059724 AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT 75059752 GTTTGCACAT Statistics Matches: 26, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 26 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:75060562 original size:40 final size:40 Alignment explanation
Indices: 75060504--75060671 Score: 196 Period size: 40 Copynumber: 4.2 Consensus size: 40 75060494 TGAATGATAC * * * 75060504 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT 1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT * * 75060544 CCGGGTTAAGACCTGAAGGCATTTGTGCGAGTTGTTATAT 1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT * * 75060584 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC 1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT * * * ** * 75060624 CCGGGTTAAAACCCGAAGGCAATTGTGCTTGTGGTTATAT 1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT 75060664 CC-GGCTAA 1 CCGGGCTAA 75060672 ATTCCGAAGA Statistics Matches: 109, Mismatches: 18, Indels: 3 0.84 0.14 0.02 Matches are distributed among these distances: 39 5 0.05 40 102 0.94 41 2 0.02 ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27 Consensus pattern (40 bp): CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT Found at i:75069169 original size:24 final size:25 Alignment explanation
Indices: 75069138--75069184 Score: 69 Period size: 24 Copynumber: 1.9 Consensus size: 25 75069128 TTATAACATG * * 75069138 AAAATGACCGTT-TTCCCCTAGGTA 1 AAAATGACCATTATACCCCTAGGTA 75069162 AAAATGACCATTATACCCCTAGG 1 AAAATGACCATTATACCCCTAGG 75069185 GTTTAATATG Statistics Matches: 20, Mismatches: 2, Indels: 1 0.87 0.09 0.04 Matches are distributed among these distances: 24 11 0.55 25 9 0.45 ACGTcount: A:0.34, C:0.26, G:0.15, T:0.26 Consensus pattern (25 bp): AAAATGACCATTATACCCCTAGGTA Found at i:75069234 original size:9 final size:9 Alignment explanation
Indices: 75069222--75069278 Score: 51 Period size: 9 Copynumber: 5.9 Consensus size: 9 75069212 TTTGATAAAC 75069222 ATGATATGT 1 ATGATATGT * 75069231 ATGATATGCAC 1 ATGATATG--T * 75069242 ATGACATGT 1 ATGATATGT * 75069251 ATGATATGCAC 1 ATGATATG--T 75069262 ATGATATGT 1 ATGATATGT 75069271 ATGATATG 1 ATGATATG 75069279 CACACGAGAT Statistics Matches: 38, Mismatches: 6, Indels: 8 0.73 0.12 0.15 Matches are distributed among these distances: 9 23 0.61 11 15 0.39 ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35 Consensus pattern (9 bp): ATGATATGT Found at i:75069245 original size:20 final size:20 Alignment explanation
Indices: 75069220--75069282 Score: 117 Period size: 20 Copynumber: 3.1 Consensus size: 20 75069210 ATTTTGATAA 75069220 ACATGATATGTATGATATGC 1 ACATGATATGTATGATATGC * 75069240 ACATGACATGTATGATATGC 1 ACATGATATGTATGATATGC 75069260 ACATGATATGTATGATATGC 1 ACATGATATGTATGATATGC 75069280 ACA 1 ACA 75069283 CGAGATGTTC Statistics Matches: 41, Mismatches: 2, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 20 41 1.00 ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32 Consensus pattern (20 bp): ACATGATATGTATGATATGC Found at i:75069392 original size:24 final size:24 Alignment explanation
Indices: 75069335--75069487 Score: 220 Period size: 24 Copynumber: 6.4 Consensus size: 24 75069325 GGAGGAAGTG 75069335 CAAAAGGGCTTATGCCCCAGTTAT 1 CAAAAGGGCTTATGCCCCAGTTAT * 75069359 -TAAAGGGCTTATGCCCCAGTTAT 1 CAAAAGGGCTTATGCCCCAGTTAT * 75069382 CAAAAGGGCTTATGCCCTAGTTAT 1 CAAAAGGGCTTATGCCCCAGTTAT 75069406 CAAAAGGGCTTATGCCCCAGTTAT 1 CAAAAGGGCTTATGCCCCAGTTAT * 75069430 -TAAAGGGCTTATGCCCCAGTTAT 1 CAAAAGGGCTTATGCCCCAGTTAT * * * 75069453 TAAAAGGGCTTTTGCCCTAGTTAT 1 CAAAAGGGCTTATGCCCCAGTTAT * 75069477 TAAAAGAGGCT 1 CAAAAG-GGCT 75069488 AGGCCTCCAG Statistics Matches: 118, Mismatches: 8, Indels: 5 0.90 0.06 0.04 Matches are distributed among these distances: 23 44 0.37 24 70 0.59 25 4 0.03 ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29 Consensus pattern (24 bp): CAAAAGGGCTTATGCCCCAGTTAT Found at i:75069404 original size:47 final size:47 Alignment explanation
Indices: 75069335--75069487 Score: 218 Period size: 47 Copynumber: 3.2 Consensus size: 47 75069325 GGAGGAAGTG 75069335 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT 1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT * * 75069382 CAAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAGTTAT 1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT * * * 75069430 -TAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCTAGTTAT 1 CAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTAT * 75069477 TAAAAGAGGCT 1 CAAAAG-GGCT 75069488 AGGCCTCCAG Statistics Matches: 94, Mismatches: 8, Indels: 6 0.87 0.07 0.06 Matches are distributed among these distances: 47 64 0.68 48 26 0.28 49 4 0.04 ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29 Consensus pattern (47 bp): CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT Found at i:75069451 original size:71 final size:71 Alignment explanation
Indices: 75069335--75069487 Score: 270 Period size: 71 Copynumber: 2.1 Consensus size: 71 75069325 GGAGGAAGTG 75069335 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCT 1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCT 75069400 AGTTAT 66 AGTTAT * * 75069406 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCT 1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCT 75069471 AGTTAT 66 AGTTAT * 75069477 TAAAAGAGGCT 1 CAAAAG-GGCT 75069488 AGGCCTCCAG Statistics Matches: 78, Mismatches: 3, Indels: 1 0.95 0.04 0.01 Matches are distributed among these distances: 71 74 0.95 72 4 0.05 ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29 Consensus pattern (71 bp): CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCT AGTTAT Found at i:75070857 original size:24 final size:24 Alignment explanation
Indices: 75070820--75071146 Score: 474 Period size: 24 Copynumber: 13.4 Consensus size: 24 75070810 CAGGAGGCCT * * 75070820 AGCCTCTTTTAATAACTAGGGCAAA 1 AGCC-CTTTTAATAACTGGGGCATA 75070845 AGCCCTTTTAATAACTGGGGCATA 1 AGCCCTTTTAATAACTGGGGCATA 75070869 AGCCCTTTTAATAACTGGGGCATA 1 AGCCCTTTTAATAACTGGGGCATA * 75070893 AGCCCTTTTGATAACTGGGGCATA 1 AGCCCTTTTAATAACTGGGGCATA * 75070917 AACCCTTTTTAATAACTGGGGCATA 1 AGCCC-TTTTAATAACTGGGGCATA * 75070942 AGCCCTTTTAATAACTAGGGCATA 1 AGCCCTTTTAATAACTGGGGCATA ** 75070966 AGCCCTTTTTAATAACTGGGGTGTA 1 AGCCC-TTTTAATAACTGGGGCATA * 75070991 AGCCCTTTTTAATAACTGGGGCGTA 1 AGCCC-TTTTAATAACTGGGGCATA * * 75071016 AGCCCTTTTGATAACTGCGGCATA 1 AGCCCTTTTAATAACTGGGGCATA * * 75071040 AGCCCTTTTGATAATTGGGGCATA 1 AGCCCTTTTAATAACTGGGGCATA 75071064 AGCCCTTTTAATAACTGGGGCATA 1 AGCCCTTTTAATAACTGGGGCATA * * 75071088 AGCCCTTTTGATAACTGGGGCGTA 1 AGCCCTTTTAATAACTGGGGCATA * 75071112 AGCCCTTTTTAATAATTGGGGCATA 1 AGCCC-TTTTAATAACTGGGGCATA 75071137 AGCCCTTTTA 1 AGCCCTTTTA 75071147 CACTTCCTCC Statistics Matches: 276, Mismatches: 23, Indels: 7 0.90 0.08 0.02 Matches are distributed among these distances: 24 184 0.67 25 92 0.33 ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31 Consensus pattern (24 bp): AGCCCTTTTAATAACTGGGGCATA Found at i:75070946 original size:49 final size:48 Alignment explanation
Indices: 75070820--75071146 Score: 474 Period size: 49 Copynumber: 6.7 Consensus size: 48 75070810 CAGGAGGCCT * * 75070820 AGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATA 1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA * 75070869 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA 1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA * * 75070917 AACCCTTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATA 1 AGCCC-TTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA ** * 75070966 AGCCCTTTTTAATAACTGGGGTGTAAGCCCTTTTTAATAACTGGGGCGTA 1 AGCCC-TTTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATA * * * * 75071016 AGCCCTTTTGATAACTGCGGCATAAGCCCTTTTGATAATTGGGGCATA 1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA * * 75071064 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCGTA 1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA * 75071112 AGCCCTTTTTAATAATTGGGGCATAAGCCCTTTTA 1 AGCCC-TTTTAATAACTGGGGCATAAGCCCTTTTA 75071147 CACTTCCTCC Statistics Matches: 251, Mismatches: 24, Indels: 6 0.89 0.09 0.02 Matches are distributed among these distances: 48 110 0.44 49 119 0.47 50 22 0.09 ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31 Consensus pattern (48 bp): AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA Found at i:75071217 original size:9 final size:9 Alignment explanation
Indices: 75071203--75071255 Score: 52 Period size: 9 Copynumber: 5.4 Consensus size: 9 75071193 ACATCATGTG 75071203 CATATCATA 1 CATATCATA 75071212 CATATCATA 1 CATATCATA 75071221 TGCATATCATA 1 --CATATCATA * * 75071232 CATGTCATGTG 1 CATATCA--TA 75071243 CATATCATA 1 CATATCATA 75071252 CATA 1 CATA 75071256 CCGTGTTTAT Statistics Matches: 36, Mismatches: 4, Indels: 8 0.75 0.08 0.17 Matches are distributed among these distances: 9 20 0.56 11 16 0.44 ACGTcount: A:0.38, C:0.21, G:0.08, T:0.34 Consensus pattern (9 bp): CATATCATA Found at i:75071224 original size:20 final size:20 Alignment explanation
Indices: 75071195--75071255 Score: 104 Period size: 20 Copynumber: 3.0 Consensus size: 20 75071185 TTATGAATAC 75071195 ATCATGTGCATATCATACAT 1 ATCATGTGCATATCATACAT * 75071215 ATCATATGCATATCATACAT 1 ATCATGTGCATATCATACAT * 75071235 GTCATGTGCATATCATACAT 1 ATCATGTGCATATCATACAT 75071255 A 1 A 75071256 CCGTGTTTAT Statistics Matches: 37, Mismatches: 4, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 20 37 1.00 ACGTcount: A:0.36, C:0.20, G:0.10, T:0.34 Consensus pattern (20 bp): ATCATGTGCATATCATACAT Found at i:75071226 original size:11 final size:11 Alignment explanation
Indices: 75071195--75071251 Score: 59 Period size: 11 Copynumber: 5.5 Consensus size: 11 75071185 TTATGAATAC * 75071195 ATCATGTGCAT 1 ATCATATGCAT 75071206 ATCATA--CAT 1 ATCATATGCAT 75071215 ATCATATGCAT 1 ATCATATGCAT 75071226 ATCATA--CAT 1 ATCATATGCAT * * 75071235 GTCATGTGCAT 1 ATCATATGCAT 75071246 ATCATA 1 ATCATA 75071252 CATACCGTGT Statistics Matches: 37, Mismatches: 5, Indels: 8 0.74 0.10 0.16 Matches are distributed among these distances: 9 16 0.43 11 21 0.57 ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35 Consensus pattern (11 bp): ATCATATGCAT Found at i:75071340 original size:25 final size:25 Alignment explanation
Indices: 75071298--75071345 Score: 69 Period size: 25 Copynumber: 1.9 Consensus size: 25 75071288 ATATTTAAAC * * * 75071298 CCTAGGGGTATAATGGTCATTTTTA 1 CCTAGGGGCAAAACGGTCATTTTTA 75071323 CCTAGGGGCAAAACGGTCATTTT 1 CCTAGGGGCAAAACGGTCATTTT 75071346 CATTTTATAA Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 25 20 1.00 ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33 Consensus pattern (25 bp): CCTAGGGGCAAAACGGTCATTTTTA Found at i:75072568 original size:27 final size:27 Alignment explanation
Indices: 75072509--75072570 Score: 72 Period size: 27 Copynumber: 2.3 Consensus size: 27 75072499 CGTATTCGTT 75072509 ATTTTACCATACAAGGGTATTACGGTC 1 ATTTTACCATACAAGGGTATTACGGTC * * * 75072536 ACTTTACCCTACAGGGGCT-TTACGGTC 1 ATTTTACCATACAAGGG-TATTACGGTC * 75072563 TTTTTACC 1 ATTTTACC 75072571 TATTAGGGGT Statistics Matches: 29, Mismatches: 5, Indels: 2 0.81 0.14 0.06 Matches are distributed among these distances: 27 28 0.97 28 1 0.03 ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35 Consensus pattern (27 bp): ATTTTACCATACAAGGGTATTACGGTC Found at i:75072654 original size:27 final size:27 Alignment explanation
Indices: 75072624--75072709 Score: 79 Period size: 27 Copynumber: 3.1 Consensus size: 27 75072614 GTAAATCTAC 75072624 AAACCAAGGGTATTTCAGTAATTTTGT 1 AAACCAAGGGTATTTCAGTAATTTTGT * * 75072651 AAACTAATGGTATTTCTA-TAATTTT-T 1 AAACCAAGGGTATTTC-AGTAATTTTGT * 75072677 AGAAAGTCAAGGGTATTT-ATGTAATTTTGT 1 --AAA-CCAAGGGTATTTCA-GTAATTTTGT 75072707 AAA 1 AAA 75072710 TTAGGGGTAT Statistics Matches: 47, Mismatches: 5, Indels: 13 0.72 0.08 0.20 Matches are distributed among these distances: 26 1 0.02 27 22 0.47 28 7 0.15 29 16 0.34 30 1 0.02 ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41 Consensus pattern (27 bp): AAACCAAGGGTATTTCAGTAATTTTGT Found at i:75072727 original size:27 final size:27 Alignment explanation
Indices: 75072687--75072843 Score: 131 Period size: 27 Copynumber: 5.8 Consensus size: 27 75072677 AGAAAGTCAA ** * 75072687 GGGTATTTAT-GTAATTTTGTAAATTAG 1 GGGTATTT-TGGTAATTTTACAAACTAG * 75072714 GGGTATTTTGGTAATTTTACAAA-TTG 1 GGGTATTTTGGTAATTTTACAAACTAG ** * * * 75072740 AGGGTATTCCGGTAATTTCACAAACCAA 1 -GGGTATTTTGGTAATTTTACAAACTAG * 75072768 TGGTATTTTGGTAATTTTACAAACTAG 1 GGGTATTTTGGTAATTTTACAAACTAG * ** 75072795 GGGTATTTTGGTAATTCTACCCTA-TAG 1 GGGTATTTTGGTAATTTTA-CAAACTAG * * 75072822 GGGTATTTTAGTAATTTCACAA 1 GGGTATTTTGGTAATTTTACAA 75072844 TCGAGGGCAA Statistics Matches: 102, Mismatches: 24, Indels: 9 0.76 0.18 0.07 Matches are distributed among these distances: 26 4 0.04 27 96 0.94 28 2 0.02 ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41 Consensus pattern (27 bp): GGGTATTTTGGTAATTTTACAAACTAG Found at i:75072826 original size:81 final size:81 Alignment explanation
Indices: 75072688--75072843 Score: 190 Period size: 81 Copynumber: 1.9 Consensus size: 81 75072678 GAAAGTCAAG ** * * * * 75072688 GGTATTTATGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTCCGGT 1 GGTATTTATGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTACAAATAGAGGGTATTCCAGT 75072753 AATTTCACAAACCAAT 66 AATTTCACAAACCAAT ** ** 75072769 GGTATTT-TGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTACCCTATAG-GGGTATTTTA 1 GGTATTTAT-GTAATTTTACAAACTAGGGGTATTTTGGTAATTCTA-CAAATAGAGGGTATTCCA 75072832 GTAATTTCACAA 64 GTAATTTCACAA 75072844 TCGAGGGCAA Statistics Matches: 63, Mismatches: 10, Indels: 4 0.82 0.13 0.05 Matches are distributed among these distances: 80 1 0.02 81 58 0.92 82 4 0.06 ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41 Consensus pattern (81 bp): GGTATTTATGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTACAAATAGAGGGTATTCCAGT AATTTCACAAACCAAT Found at i:75072872 original size:27 final size:27 Alignment explanation
Indices: 75072842--75073014 Score: 186 Period size: 27 Copynumber: 6.4 Consensus size: 27 75072832 GTAATTTCAC * * 75072842 AATCGAGGGCAAAATGGTAATTCTATA 1 AATCGAGGGTAAAACGGTAATTCTATA * * 75072869 AATCGAGGGTAAAACGATAATTCTGTA 1 AATCGAGGGTAAAACGGTAATTCTATA * * * 75072896 AA-CCAGGGGTAAAACTGTAATTCTGTA 1 AATCGA-GGGTAAAACGGTAATTCTATA * ** 75072923 AATCGAGGTTAAAATAGTAATTCTATA 1 AATCGAGGGTAAAACGGTAATTCTATA * * * 75072950 AATTGAGGGTAAAACGGTAATTTTGTA 1 AATCGAGGGTAAAACGGTAATTCTATA * * 75072977 AATCGAGGGTAAAACGATTATTCTATA 1 AATCGAGGGTAAAACGGTAATTCTATA * 75073004 AATCAAGGGTA 1 AATCGAGGGTA 75073015 CTTTGGTAAA Statistics Matches: 120, Mismatches: 24, Indels: 4 0.81 0.16 0.03 Matches are distributed among these distances: 26 2 0.02 27 116 0.97 28 2 0.02 ACGTcount: A:0.40, C:0.10, G:0.21, T:0.28 Consensus pattern (27 bp): AATCGAGGGTAAAACGGTAATTCTATA Found at i:75072950 original size:81 final size:81 Alignment explanation
Indices: 75072842--75072991 Score: 221 Period size: 81 Copynumber: 1.9 Consensus size: 81 75072832 GTAATTTCAC * 75072842 AATCGAGGGCAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACC-AGGGGT 1 AATCGAGGGCAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACCGA-GGGT 75072906 AAAACTGTAATTCTGTA 65 AAAACTGTAATTCTGTA ** * * * * 75072923 AATCGAGGTTAAAATAGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA 1 AATCGAGGGCAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACCGAGGGTA 75072988 AAAC 66 AAAC 75072992 GATTATTCTA Statistics Matches: 61, Mismatches: 7, Indels: 2 0.87 0.10 0.03 Matches are distributed among these distances: 81 60 0.98 82 1 0.02 ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27 Consensus pattern (81 bp): AATCGAGGGCAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACCGAGGGTA AAACTGTAATTCTGTA Found at i:75073000 original size:81 final size:81 Alignment explanation
Indices: 75072842--75073012 Score: 220 Period size: 81 Copynumber: 2.1 Consensus size: 81 75072832 GTAATTTCAC * 75072842 AATCGAGGGCAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACCAGGGGTA 1 AATCGAGGGCAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACCAGGGGTA * 75072907 AAACTGTAATTCTGTA 66 AAACTGTAATTCTATA ** * * * * 75072923 AATCGAGGTTAAAATAGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATC-GAGGGT 1 AATCGAGGGCAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACCAG-GGGT * 75072987 AAAAC-GATTATTCTATA 65 AAAACTG-TAATTCTATA * 75073004 AATCAAGGG 1 AATCGAGGG 75073013 TACTTTGGTA Statistics Matches: 77, Mismatches: 11, Indels: 4 0.84 0.12 0.04 Matches are distributed among these distances: 80 2 0.03 81 75 0.97 ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28 Consensus pattern (81 bp): AATCGAGGGCAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACCAGGGGTA AAACTGTAATTCTATA Found at i:75076020 original size:40 final size:39 Alignment explanation
Indices: 75075856--75076020 Score: 163 Period size: 40 Copynumber: 4.1 Consensus size: 39 75075846 CGGAGTTTAA * ** * * 75075856 CCGGACATAGCTACTCGTTCAAATACCTTCGGGACATAGC 1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGC * * 75075896 CCGGTTATAGTAGCTCGCACAAATGCCTTCGGGACTTAAC 1 CCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGC * * * 75075936 TCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT 1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGA-CTTAGC * 75075976 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC 1 CCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGC 75076016 CCGGA 1 CCGGA 75076021 CATCATTCGA Statistics Matches: 103, Mismatches: 17, Indels: 10 0.79 0.13 0.08 Matches are distributed among these distances: 39 5 0.05 40 86 0.83 41 12 0.12 ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25 Consensus pattern (39 bp): CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGC Found at i:75080605 original size:29 final size:29 Alignment explanation
Indices: 75080566--75080645 Score: 108 Period size: 29 Copynumber: 2.7 Consensus size: 29 75080556 CTTAATAATC * 75080566 AACCACGCACACTTAGTGCCATGTACTTT-A 1 AACC-CGCACACTTAGTGCCATGCA-TTTCA * 75080596 AACTCGCACACTTAGTGCCATGCATTTCA 1 AACCCGCACACTTAGTGCCATGCATTTCA * 75080625 AGCCCGCACACTTAGTGCCAT 1 AACCCGCACACTTAGTGCCAT 75080646 TCTCTCAACC Statistics Matches: 45, Mismatches: 4, Indels: 3 0.87 0.08 0.06 Matches are distributed among these distances: 28 3 0.07 29 39 0.87 30 3 0.07 ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25 Consensus pattern (29 bp): AACCCGCACACTTAGTGCCATGCATTTCA Found at i:75087106 original size:40 final size:39 Alignment explanation
Indices: 75087062--75087242 Score: 179 Period size: 40 Copynumber: 4.5 Consensus size: 39 75087052 GCTACTCGTT * * * 75087062 CAAATACCTTCGGGACATAGCCCGGTTATAGTAGCTCGCA 1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCA * 75087102 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA 1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA * * 75087142 CAAATGCCTTC-GGATCTTAGTCCAGATTTAGTAACTCGCA 1 CAAATGCCTTCGGGA-CTTAG-CCCGGTTTAGTAACTCGCA * * * * 75087182 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA 1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAAC-TCGCA * 75087223 CAAA-GCCTTCGCGACTTAGC 1 CAAATGCCTTCGGGACTTAGC 75087243 GCAGACATCA Statistics Matches: 120, Mismatches: 15, Indels: 12 0.82 0.10 0.08 Matches are distributed among these distances: 39 5 0.04 40 100 0.83 41 15 0.12 ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26 Consensus pattern (39 bp): CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA Found at i:75087174 original size:80 final size:80 Alignment explanation
Indices: 75087090--75087241 Score: 202 Period size: 80 Copynumber: 1.9 Consensus size: 80 75087080 AGCCCGGTTA * * * 75087090 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTC 1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCACAAA-GCCTTC 75087153 G-GATCTTAGTCCAGATT 64 GCGA-CTTAGTCCAGATT ** * 75087170 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGC 1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGC 75087235 GACTTAG 66 GACTTAG 75087242 CGCAGACATC Statistics Matches: 63, Mismatches: 6, Indels: 6 0.84 0.08 0.08 Matches are distributed among these distances: 79 3 0.05 80 50 0.79 81 10 0.16 ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27 Consensus pattern (80 bp): TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGC GACTTAGTCCAGATT Done.