Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 243 of 410
Found at i:75090546 original size:24 final size:24
Alignment explanation
Indices: 75090509--75090811 Score: 471
Period size: 24 Copynumber: 12.4 Consensus size: 24
75090499 CTAGAGGCCC
*
75090509 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
75090534 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
75090558 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
75090582 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
75090606 AACCCTTTTTAATAACTGGGGCATA
1 AGCCC-TTTTAATAACTGGGGCATA
*
75090631 AGCCCTTTTTAATAACTGGGGCGTA
1 AGCCC-TTTTAATAACTGGGGCATA
*
75090656 AGCCCTTTTTAATAACTGGGGCGTA
1 AGCCC-TTTTAATAACTGGGGCATA
* *
75090681 AGCCCTTTTGATAACTGCGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
75090705 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
75090729 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
75090753 AGCCCTTTTGATAACTGGGGCGTA
1 AGCCCTTTTAATAACTGGGGCATA
75090777 AGCCCTTTTTAATAACTGGGGCATA
1 AGCCC-TTTTAATAACTGGGGCATA
75090802 AGCCCTTTTA
1 AGCCCTTTTA
75090812 CACTTCCTCC
Statistics
Matches: 261, Mismatches: 15, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
24 164 0.63
25 97 0.37
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:75090882 original size:9 final size:9
Alignment explanation
Indices: 75090868--75090940 Score: 56
Period size: 9 Copynumber: 7.4 Consensus size: 9
75090858 ACATCATGTG
75090868 CATATCATA
1 CATATCATA
*
75090877 CATATCATGTG
1 CATATCA--TA
75090888 CATATCATA
1 CATATCATA
*
75090897 CATATCATGTG
1 CATATCA--TA
75090908 CATATCATA
1 CATATCATA
* *
75090917 CATGTCATGTG
1 CATATCA--TA
75090928 CATATCATA
1 CATATCATA
75090937 CATA
1 CATA
75090941 CCGTGTTTAT
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
9 27 0.54
11 23 0.46
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.34
Consensus pattern (9 bp):
CATATCATA
Found at i:75090885 original size:20 final size:20
Alignment explanation
Indices: 75090860--75090940 Score: 153
Period size: 20 Copynumber: 4.0 Consensus size: 20
75090850 TTATGAATAC
75090860 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
75090880 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
75090900 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
75090920 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
75090940 A
1 A
75090941 CCGTGTTTAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:75090891 original size:11 final size:11
Alignment explanation
Indices: 75090860--75090935 Score: 74
Period size: 11 Copynumber: 7.5 Consensus size: 11
75090850 TTATGAATAC
75090860 ATCATGTGCAT
1 ATCATGTGCAT
*
75090871 ATCA--TACAT
1 ATCATGTGCAT
75090880 ATCATGTGCAT
1 ATCATGTGCAT
*
75090891 ATCA--TACAT
1 ATCATGTGCAT
75090900 ATCATGTGCAT
1 ATCATGTGCAT
*
75090911 ATCA--TACAT
1 ATCATGTGCAT
*
75090920 GTCATGTGCAT
1 ATCATGTGCAT
75090931 ATCAT
1 ATCAT
75090936 ACATACCGTG
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 23 0.45
11 28 0.55
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:75092340 original size:27 final size:27
Alignment explanation
Indices: 75092309--75092496 Score: 141
Period size: 27 Copynumber: 6.9 Consensus size: 27
75092299 GGTAAATCTA
75092309 CAAACCAAGGGTATTTTAGTAATTTTG
1 CAAACCAAGGGTATTTTAGTAATTTTG
* *
75092336 TAAACCAATGGTATTTCTA-TAATTTTTAG
1 CAAACCAAGGGTATTT-TAGTAA-TTTT-G
*
75092365 -AAAGTCAAGGGTA-TTTATGTAATTTTG
1 CAAA-CCAAGGGTATTTTA-GTAATTTTG
* * *
75092392 TAAATCAGGGGTATTTT-GATAATTTTG
1 CAAACCAAGGGTATTTTAG-TAATTTTG
** ** **
75092419 CAAATTAAGGGTATTTCGGTAATTTCA
1 CAAACCAAGGGTATTTTAGTAATTTTG
* * *
75092446 CAAACCAATGGTATTTTGGTAATTTTA
1 CAAACCAAGGGTATTTTAGTAATTTTG
* *
75092473 CAAACTAGGGGTATTTTAGTAATT
1 CAAACCAAGGGTATTTTAGTAATT
75092497 CTACCCTACA
Statistics
Matches: 131, Mismatches: 20, Indels: 20
0.77 0.12 0.12
Matches are distributed among these distances:
26 1 0.01
27 97 0.74
28 22 0.17
29 11 0.08
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
CAAACCAAGGGTATTTTAGTAATTTTG
Found at i:75092495 original size:54 final size:54
Alignment explanation
Indices: 75092263--75092496 Score: 159
Period size: 54 Copynumber: 4.3 Consensus size: 54
75092253 TACCTATTAG
* ** ** * * * *
75092263 GGGTATTTTAGTTATTTCATCCTA-CAAGGGTGCTTTGGTAAATCTACAAACCAA
1 GGGTATTTTAGTAATTTCA-CAAACCAAGGGTATTTTGATAATTTTACAAACTAA
*** * * *
75092317 GGGTATTTTAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAGTCAA
1 GGGTATTTTAGTAATTTCACAAACCAAGGGTATTT-TGATAA-TTTTACAAACT-AA
*** * * * *
75092373 GGGTA-TTTATGTAATTTTGTAAATCAGGGGTATTTTGATAATTTTGCAAATTAA
1 GGGTATTTTA-GTAATTTCACAAACCAAGGGTATTTTGATAATTTTACAAACTAA
** * * *
75092427 GGGTATTTCGGTAATTTCACAAACCAATGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTAGTAATTTCACAAACCAAGGGTATTTTGATAATTTTACAAACTAA
75092481 GGGTATTTTAGTAATT
1 GGGTATTTTAGTAATT
75092497 CTACCCTACA
Statistics
Matches: 138, Mismatches: 35, Indels: 14
0.74 0.19 0.07
Matches are distributed among these distances:
53 1 0.01
54 82 0.59
55 22 0.16
56 33 0.24
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTCACAAACCAAGGGTATTTTGATAATTTTACAAACTAA
Found at i:75092536 original size:27 final size:26
Alignment explanation
Indices: 75092427--75092529 Score: 82
Period size: 27 Copynumber: 3.8 Consensus size: 26
75092417 TGCAAATTAA
* *
75092427 GGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTCAGTAATTTCACAAA-CAG
* ** *
75092454 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTCAGTAATTTCACAAAC-AG
* **
75092481 GGGTATTTTAGTAA-TTCTACCCTACAG
1 GGGTATTTCAGTAATTTC-A-CAAACAG
75092508 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTCAGTAATTTCACAA
75092530 TCGAGGGCAA
Statistics
Matches: 60, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
26 4 0.07
27 50 0.83
28 6 0.10
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (26 bp):
GGGTATTTCAGTAATTTCACAAACAG
Found at i:75092558 original size:27 final size:27
Alignment explanation
Indices: 75092528--75092700 Score: 195
Period size: 27 Copynumber: 6.4 Consensus size: 27
75092518 GTAATTTCAC
* *
75092528 AATCGAGGGCAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
75092555 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
75092582 AAT-TAGGGGTAAAACGGTAATTCTGTA
1 AATCGA-GGGTAAAACGGTAATTCTATA
* **
75092609 AATCGAGGTTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
** * *
75092636 AATTAAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
75092663 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
75092690 AATCAAGGGTA
1 AATCGAGGGTA
75092701 CTTTGGTAAA
Statistics
Matches: 120, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 1 0.01
27 118 0.98
28 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:75092636 original size:81 final size:81
Alignment explanation
Indices: 75092528--75092698 Score: 227
Period size: 81 Copynumber: 2.1 Consensus size: 81
75092518 GTAATTTCAC
* *
75092528 AATCGAGGGCAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATTAG-GGGT
1 AATCGAGGGCAAAATAGTAATTCTATAAATCAAGGGTAAAACGATAATTCTGTAAA-TAGAGGGT
* *
75092592 AAAACGGTAATTCTGTA
65 AAAACGATAATTCTATA
** * * * *
75092609 AATCGAGGTTAAAATAGTAATTCTATAAATTAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGCAAAATAGTAATTCTATAAATCAAGGGTAAAACGATAATTCTGTAAATAGAGGGTA
75092674 AAACGATAATTCTATA
66 AAACGATAATTCTATA
*
75092690 AATCAAGGG
1 AATCGAGGG
75092699 TACTTTGGTA
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 2 0.03
81 75 0.97
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
AATCGAGGGCAAAATAGTAATTCTATAAATCAAGGGTAAAACGATAATTCTGTAAATAGAGGGTA
AAACGATAATTCTATA
Found at i:75092709 original size:54 final size:54
Alignment explanation
Indices: 75092533--75092700 Score: 239
Period size: 54 Copynumber: 3.1 Consensus size: 54
75092523 TTCACAATCG
* * * *
75092533 AGGGCAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATTA
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATTA
* * *
75092587 GGGGTAAAACGGTAATTCTGTAAATCGAGGTTAAAA-TAGTAATTCTATAAATTA
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTATAAATTA
* *
75092641 AGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCA
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATTA
75092695 AGGGTA
1 AGGGTA
75092701 CTTTGGTAAA
Statistics
Matches: 100, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 98 0.98
55 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (54 bp):
AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATTA
Found at i:75098509 original size:24 final size:24
Alignment explanation
Indices: 75098479--75098527 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
75098469 TCAAATACAT
*
75098479 AGAAGAACAAAACATAGCCAAGCA
1 AGAAGAACAAAACATAACCAAGCA
*
75098503 AGAAGAACAAAACATAACTAAGCA
1 AGAAGAACAAAACATAACCAAGCA
75098527 A
1 A
75098528 TTAGTTCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.61, C:0.18, G:0.14, T:0.06
Consensus pattern (24 bp):
AGAAGAACAAAACATAACCAAGCA
Found at i:75113726 original size:29 final size:29
Alignment explanation
Indices: 75113691--75113764 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
75113681 GTTGTGAGAT
* *
75113691 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
75113720 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
75113749 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75113765 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:75132056 original size:22 final size:22
Alignment explanation
Indices: 75132031--75132079 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
75132021 CTAAGAGAGT
*
75132031 TGAGAGAGGAGA-GAATGATGAA
1 TGAGAGAGG-GATGAATGATAAA
* *
75132053 TGAGTGAGGGATGACTGATAAA
1 TGAGAGAGGGATGAATGATAAA
75132075 TGAGA
1 TGAGA
75132080 AATGGGGTCT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 2 0.09
22 20 0.91
ACGTcount: A:0.41, C:0.02, G:0.39, T:0.18
Consensus pattern (22 bp):
TGAGAGAGGGATGAATGATAAA
Found at i:75149928 original size:40 final size:39
Alignment explanation
Indices: 75149829--75149931 Score: 111
Period size: 40 Copynumber: 2.6 Consensus size: 39
75149819 GCTAAGTGAT
* * *
75149829 TAAATCCGGGTCAATTCTCGAAGGCATTCGTGCGAGTTAC
1 TAAATCCGGG-CAATTCCCGAAGGCATTCGTGCGAATCAC
*
75149869 TAAATCTGGGCTAATTCCCGAAGGCAATT-GTGCGAATCAC
1 TAAATCCGGGC-AATTCCCGAAGGC-ATTCGTGCGAATCAC
75149909 TATAA-CCGGGCAATGTCCCGAAG
1 TA-AATCCGGGCAAT-TCCCGAAG
75149932 ACAACCGAGC
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
39 4 0.07
40 45 0.83
41 5 0.09
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.24
Consensus pattern (39 bp):
TAAATCCGGGCAATTCCCGAAGGCATTCGTGCGAATCAC
Found at i:75157850 original size:40 final size:40
Alignment explanation
Indices: 75157799--75157933 Score: 120
Period size: 40 Copynumber: 3.4 Consensus size: 40
75157789 AATGGTGTCC
* * *
75157799 GGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGA-TAAATCCG
1 GGCTAATTCCCGAAGGCATTCGTGC-AAGTGACTAAATCCG
* *
75157839 GG-TCAATTCCCGAAGGCATTCGTGCGAGTTACTAAATCCG
1 GGCT-AATTCCCGAAGGCATTCGTGCAAGTGACTAAATCCG
*
75157879 GGCTAATTCCCGAAGGCAATT-GTGCGAA-TCACTATAA-CCG
1 GGCTAATTCCCGAAGGC-ATTCGTGC-AAGTGACTA-AATCCG
75157919 GGC-AATGTCCCGAAG
1 GGCTAAT-TCCCGAAG
75157934 ACAACGAGCG
Statistics
Matches: 81, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
39 8 0.10
40 66 0.81
41 7 0.09
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
GGCTAATTCCCGAAGGCATTCGTGCAAGTGACTAAATCCG
Found at i:75160822 original size:191 final size:191
Alignment explanation
Indices: 75160465--75160847 Score: 649
Period size: 191 Copynumber: 2.0 Consensus size: 191
75160455 GGCCCTCTTC
* *
75160465 TAGTAGTCCTTATAAGTAAAATGTCAGTTTATCTACCAGAGATATGACATGTTTACGAGTTAGTA
1 TAGTACTCCTTATAAGTAAAATGTCAGTTTATCTACCAGAGATATGACATGTTTACGAGTTAGGA
*
75160530 TAAAGTTAAGTGGATGTTCATGATAGGAAGTGTGAAGAAAAAGGAACATAAGATAATATGTGCAA
66 TAAAGTTAAGTGGATGTTCAAGATAGGAAGTGTGAAGAAAAAGGAACATAAGATAATATGTGCAA
* *
75160595 GGAAAGTGAGAATCCATAAGAATGATAAATCATCTAGCATTCACCAAAATTAGTTGAATGG
131 GGAAAGTGAGAATCCATAAGAAGGATAAAACATCTAGCATTCACCAAAATTAGTTGAATGG
* * * * * **
75160656 TAGTACTCCTTTTGAGTAGAATGTCAGTTTATCTACTAGAGCTATGATGTGTTTACGAGTTAGGA
1 TAGTACTCCTTATAAGTAAAATGTCAGTTTATCTACCAGAGATATGACATGTTTACGAGTTAGGA
75160721 TAAAGTTAAGTGGATGTTCAAGATAGGAAGTGTGAAGAAAAAGGAACATAAGATAATATGTGCAA
66 TAAAGTTAAGTGGATGTTCAAGATAGGAAGTGTGAAGAAAAAGGAACATAAGATAATATGTGCAA
*
75160786 GGAAAGTGAGGATCCATAAGAAGGATAAAACATCTAGCATTCACCAAAATTAGTTGAATGG
131 GGAAAGTGAGAATCCATAAGAAGGATAAAACATCTAGCATTCACCAAAATTAGTTGAATGG
75160847 T
1 T
75160848 CATAAGCTCA
Statistics
Matches: 179, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
191 179 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (191 bp):
TAGTACTCCTTATAAGTAAAATGTCAGTTTATCTACCAGAGATATGACATGTTTACGAGTTAGGA
TAAAGTTAAGTGGATGTTCAAGATAGGAAGTGTGAAGAAAAAGGAACATAAGATAATATGTGCAA
GGAAAGTGAGAATCCATAAGAAGGATAAAACATCTAGCATTCACCAAAATTAGTTGAATGG
Found at i:75163594 original size:29 final size:28
Alignment explanation
Indices: 75163562--75163664 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
75163552 GGGACGAGAT
* *
75163562 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
75163591 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
75163620 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
75163649 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75163665 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:75167006 original size:19 final size:18
Alignment explanation
Indices: 75166961--75167006 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
75166951 AGTGTTCTCG
75166961 TGGG-CTTGGGCCATGAA
1 TGGGCCTTGGGCCATGAA
*
75166978 -GGGCCCTTGGGCCGTGTAA
1 TGGG-CCTTGGGCCATG-AA
75166997 TGGGCCTTGG
1 TGGGCCTTGG
75167007 ACCCATTTGC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
16 3 0.12
18 10 0.42
19 8 0.33
20 3 0.12
ACGTcount: A:0.11, C:0.22, G:0.43, T:0.24
Consensus pattern (18 bp):
TGGGCCTTGGGCCATGAA
Found at i:75167411 original size:29 final size:29
Alignment explanation
Indices: 75167361--75167416 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
75167351 CCACACTTAC
* *
75167361 TATTACTGGCAGCTACGTTGCGTTATTAT
1 TATTACTGGCAGCTACGCTGCGATATTAT
*
75167390 TATTACTGGCAGCCT-TGCTGCGATATT
1 TATTACTGGCAG-CTACGCTGCGATATT
75167417 GGTGTGCTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 21 0.91
30 2 0.09
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (29 bp):
TATTACTGGCAGCTACGCTGCGATATTAT
Found at i:75171124 original size:2 final size:2
Alignment explanation
Indices: 75171117--75171141 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
75171107 ATGATTTGTG
75171117 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
75171142 AGTAAAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:75191128 original size:79 final size:81
Alignment explanation
Indices: 75190992--75191174 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
75190982 TCGAATGATG
* *
75190992 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGGTCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGGTCCGAAGGCATT
75191056 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
75191071 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-AAGTTACTAAATCCGGGTTAA-GTCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGGT-CCGAAGGCA
75191133 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
75191151 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
75191175 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 2 0.02
79 59 0.65
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGGTCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:75191183 original size:40 final size:39
Alignment explanation
Indices: 75190993--75191176 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
75190983 CGAATGATGT
* * * *
75190993 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
75191033 CCGGACTAAGGT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAA-GTCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
75191073 CCGGGCTAAG-CCCGAAGGCATTGGTGCAAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75191111 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
75191152 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
75191177 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 11 0.09
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75191209 original size:79 final size:79
Alignment explanation
Indices: 75191045--75191201 Score: 194
Period size: 79 Copynumber: 2.0 Consensus size: 79
75191035 GGACTAAGGT
* **
75191045 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCAAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACAAGTTACTAA
*
75191110 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
75191124 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACAAGTTA-C
*
75191187 TATATCC-GGTTAAAT
63 TAAATCCGGGTTAAAT
75191202 TTCGAAGGTA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 42 0.63
80 23 0.34
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACAAGTTACTAA
ATCCGGGTTAAATC
Found at i:75198325 original size:27 final size:27
Alignment explanation
Indices: 75198269--75198365 Score: 176
Period size: 27 Copynumber: 3.6 Consensus size: 27
75198259 AAATTTGTAC
75198269 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-TTGATTATAT
*
75198297 AGCACTAAGTGTGTGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATAT
75198324 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATAT
75198351 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75198366 GACTCACTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 51 0.76
28 16 0.24
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATAT
Found at i:75198377 original size:54 final size:55
Alignment explanation
Indices: 75198269--75198377 Score: 159
Period size: 54 Copynumber: 2.0 Consensus size: 55
75198259 AAATTTGTAC
* * * *
75198269 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGTGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGGGAGCTCACTATAT
75198324 AGCACTAAGTGTGCGAG-TTGATTATATAGCACTAAGTGTGCGGA-CTCACTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTG-GGAGCTCACTATAT
75198378 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 30 0.61
55 19 0.39
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGGGAGCTCACTATAT
Found at i:75206214 original size:27 final size:28
Alignment explanation
Indices: 75206158--75206227 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
75206148 AAATTTGTAC
*
75206158 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGTGAGTTTGATTATAT
75206186 AGCACTAAGTGTGTGAG-TTGATTATAT
1 AGCACTAAGTGTGTGAGTTTGATTATAT
75206213 AGCACTAAGTGTGTG
1 AGCACTAAGTGTGTG
75206228 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 25 0.61
28 16 0.39
ACGTcount: A:0.29, C:0.10, G:0.27, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGTGAGTTTGATTATAT
Found at i:75206238 original size:27 final size:27
Alignment explanation
Indices: 75206158--75206239 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
75206148 AAATTTGTAC
* * * *
75206158 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGTGAG-CTCACTATAT
* * *
75206186 AGCACTAAGTGTGTGAGTTGATTATAT
1 AGCACTAAGTGTGTGAGCTCACTATAT
75206213 AGCACTAAGTGTGTG-GACTCACTATAT
1 AGCACTAAGTGTGTGAG-CTCACTATAT
75206240 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 1 0.02
27 32 0.65
28 16 0.33
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGTGAGCTCACTATAT
Found at i:75222023 original size:40 final size:40
Alignment explanation
Indices: 75221968--75222159 Score: 314
Period size: 40 Copynumber: 4.8 Consensus size: 40
75221958 CAATTGAATG
*
75221968 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAG-TGATT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
75222008 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCT
* *
75222048 ATATCCGAGTTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCT
*
75222088 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCT
* *
75222128 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGC
75222160 TTGTGGTTAT
Statistics
Matches: 142, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 140 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCT
Found at i:75229803 original size:22 final size:22
Alignment explanation
Indices: 75229778--75229824 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
75229768 ACAAATTTCA
75229778 TTTATAGGACAAGTCATCATCT
1 TTTATAGGACAAGTCATCATCT
75229800 TTTATAGGACAAGTCATCATCT
1 TTTATAGGACAAGTCATCATCT
75229822 TTT
1 TTT
75229825 TCATGTCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (22 bp):
TTTATAGGACAAGTCATCATCT
Found at i:75239296 original size:43 final size:41
Alignment explanation
Indices: 75239249--75239339 Score: 110
Period size: 41 Copynumber: 2.2 Consensus size: 41
75239239 TCCCAAATAT
* * *
75239249 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAA
1 GGTCTTACACGAAATCAAATA-CGAT-CCAATGTCCCAGACAA
* * *
75239292 GGTCTTACGCGAAATCATATACGATCCAATGTCCCAGACAT
1 GGTCTTACACGAAATCAAATACGATCCAATGTCCCAGACAA
75239333 GGTCTTA
1 GGTCTTA
75239340 TACATAAAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 21 0.50
42 4 0.10
43 17 0.40
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (41 bp):
GGTCTTACACGAAATCAAATACGATCCAATGTCCCAGACAA
Found at i:75239337 original size:41 final size:42
Alignment explanation
Indices: 75239222--75239339 Score: 130
Period size: 43 Copynumber: 2.8 Consensus size: 42
75239212 GCTCAGAGAA
* * * * * *
75239222 CATATACAATGCCAACGTCCCAAATATGGTCTTACATGTAAT
1 CATATACGATGCCAATGTCCCAGACATGGTCTTACACGAAAT
* * * *
75239264 CAAATATCGATGCCACTGTCCCAGACAAGGTCTTACGCGAAAT
1 CATATA-CGATGCCAATGTCCCAGACATGGTCTTACACGAAAT
75239307 CATATACGAT-CCAATGTCCCAGACATGGTCTTA
1 CATATACGATGCCAATGTCCCAGACATGGTCTTA
75239340 TACATAAAAC
Statistics
Matches: 62, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
41 21 0.34
42 9 0.15
43 32 0.52
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.25
Consensus pattern (42 bp):
CATATACGATGCCAATGTCCCAGACATGGTCTTACACGAAAT
Found at i:75249728 original size:84 final size:85
Alignment explanation
Indices: 75249629--75249821 Score: 266
Period size: 86 Copynumber: 2.3 Consensus size: 85
75249619 CTGTATACTC
* * *
75249629 AACCTGTTACCCTACTGCTTAGGGGCTTAAGGTTCTTCGTCTT-ATCTGC-TCCACTATTGCTTA
1 AACCTGTTAACCTACTGCTTAGGGGCTTAAGGTTCTTCG-CTTCATCTACAACCACTATTGCTTA
75249692 AGGAGATAAGATCTGCAATTT
65 AGGAGATAAGATCTGCAATTT
*
75249713 AACCTGTTAACCTACTGCTTAGGGGTTTAAGGTTCTTCGCTTCGATCTACAACCACTATTGCTTA
1 AACCTGTTAACCTACTGCTTAGGGGCTTAAGGTTCTTCGCTTC-ATCTACAACCACTATTGCTTA
*
75249778 GGGAGATAAGATCTGCAATTT
65 AGGAGATAAGATCTGCAATTT
*** *
75249799 GGTCTGTT-TCCTACTGCTTAGGG
1 AACCTGTTAACCTACTGCTTAGGG
75249822 TTTAAGACCC
Statistics
Matches: 97, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
83 3 0.03
84 37 0.38
85 19 0.20
86 38 0.39
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (85 bp):
AACCTGTTAACCTACTGCTTAGGGGCTTAAGGTTCTTCGCTTCATCTACAACCACTATTGCTTAA
GGAGATAAGATCTGCAATTT
Found at i:75249806 original size:86 final size:84
Alignment explanation
Indices: 75249629--75249827 Score: 269
Period size: 84 Copynumber: 2.4 Consensus size: 84
75249619 CTGTATACTC
* * * *
75249629 AACCTGTTACCCTACTGCTTAGGGGCTTAAGGTTCTTCGTCTTATCTGCTCCACTATTGCTTAAG
1 AACCTGTTAACCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTATCTACACCACTATTGCTTAAG
75249694 GAGATAAGATCTGCAATTT
66 GAGATAAGATCTGCAATTT
75249713 AACCTGTTAACCTACTGCTTAGGGGTTTAAGGTTCTTCG-CTTCGATCTACAACCACTATTGCTT
1 AACCTGTTAACCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTT--ATCTAC-ACCACTATTGCTT
*
75249777 AGGGAGATAAGATCTGCAATTT
63 AAGGAGATAAGATCTGCAATTT
*** *
75249799 GGTCTGTT-TCCTACTGCTTA-GGGTTTAAG
1 AACCTGTTAACCTACTGCTTAGGGGTTTAAG
75249828 ACCCTATGAA
Statistics
Matches: 103, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
83 3 0.03
84 46 0.45
85 16 0.16
86 38 0.37
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (84 bp):
AACCTGTTAACCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTATCTACACCACTATTGCTTAAG
GAGATAAGATCTGCAATTT
Found at i:75250099 original size:43 final size:43
Alignment explanation
Indices: 75250042--75250243 Score: 182
Period size: 43 Copynumber: 4.7 Consensus size: 43
75250032 TTAAAGCCCA
*
75250042 TCATCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
1 TCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
* **
75250085 TCATCTTCGATCTGTTTCCCTACTGCTTA-AGGAAT-AGATCT
1 TCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
* * * * * * * *
75250126 GCA-ATTCGGTCTG-TTACCTACCGATTAGGGGTTTAAGACCCT
1 TCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGA-TCT
*
75250168 TCGTCTTCGATCTG-TTCCCTACTGCTTAGGGGGTTAAGATCT
1 TCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
* * *
75250210 GTAAATCTTC-AGCCTGTTACCCTACTGCTTAGGG
1 -T-CATCTTCGA-TCTGTTTCCCTACTGCTTAGGG
75250244 AGGTAAGCTT
Statistics
Matches: 124, Mismatches: 27, Indels: 14
0.75 0.16 0.08
Matches are distributed among these distances:
39 11 0.09
40 11 0.09
41 11 0.09
42 8 0.06
43 59 0.48
44 8 0.06
45 16 0.13
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.37
Consensus pattern (43 bp):
TCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
Found at i:75250204 original size:125 final size:126
Alignment explanation
Indices: 75250015--75250240 Score: 316
Period size: 125 Copynumber: 1.8 Consensus size: 126
75250005 TAGATTTGGC
* * *
75250015 TTACCTACTGCTTAGGGTTAAAGCCCATCATCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAA
1 TTACCTACCGATTAGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAA
* * *
75250080 GATCT-T-CATCTTC-GATCTGTTTCCCTACTGCTTAAGGAATAGATCTGCAATTCGGTCTG
66 GATCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAAGGAATAGATCTGCAATTCGGTCTG
* * *
75250139 TTACCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTG-TTCCCTACTGCTTAGGGGGTT
1 TTACCTACCGATTA-GGGTTAAAG-CCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
75250203 AAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA
64 AAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA
75250241 GGGAGGTAAG
Statistics
Matches: 88, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
124 12 0.14
125 36 0.41
126 16 0.18
127 23 0.26
128 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.36
Consensus pattern (126 bp):
TTACCTACCGATTAGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAA
GATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAAGGAATAGATCTGCAATTCGGTCTG
Found at i:75259047 original size:28 final size:28
Alignment explanation
Indices: 75258982--75259082 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
75258972 ATAGTGAATC
*
75258982 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
75259011 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
75259039 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
75259069 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75259083 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:75293839 original size:41 final size:41
Alignment explanation
Indices: 75293792--75293875 Score: 150
Period size: 41 Copynumber: 2.0 Consensus size: 41
75293782 CCAAAGTAGA
*
75293792 AGTTCGACAGTGTGATGCAATCTCTGACAACTACCAATCCG
1 AGTTCGACAGTGTGATGCAATCTCTAACAACTACCAATCCG
*
75293833 AGTTCGACAGTGTGATGCAATCTCTAACGACTACCAATCCG
1 AGTTCGACAGTGTGATGCAATCTCTAACAACTACCAATCCG
75293874 AG
1 AG
75293876 CTAGCTTCGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (41 bp):
AGTTCGACAGTGTGATGCAATCTCTAACAACTACCAATCCG
Found at i:75296486 original size:46 final size:46
Alignment explanation
Indices: 75296419--75296593 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
75296409 TGTAACCCGC
* *
75296419 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGCTCGCAT
* *
75296465 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGC-CTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAG--GCGCTCGCAT
* *** *
75296511 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTC-GGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCAGG-CGCTCGCAT
*
75296558 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAG
75296594 ATACCCAAAT
Statistics
Matches: 107, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 70 0.65
47 33 0.31
48 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGCTCGCAT
Found at i:75296535 original size:93 final size:93
Alignment explanation
Indices: 75296427--75296595 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
75296417 GCCCATAAGT
*
75296427 GAACTCGAACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAGCTC-GGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
75296491 ACGAGCTCAGATGCCTAGTTACATCTCTC
65 ACGAGCTCAGATGCCTAGTTACATCTCTC
* *
75296520 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
75296585 CGAGTTCAGAT
66 CGAGCTCAGAT
75296596 ACCCAAATAT
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:75298143 original size:16 final size:17
Alignment explanation
Indices: 75298122--75298153 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
75298112 TAAGGTTGCA
75298122 TAGCTATTAG-ACACTT
1 TAGCTATTAGAACACTT
75298138 TAGCTATTAGAACACT
1 TAGCTATTAGAACACT
75298154 ACTTTTGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (17 bp):
TAGCTATTAGAACACTT
Found at i:75299923 original size:27 final size:28
Alignment explanation
Indices: 75299893--75299962 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
75299883 ATAGTGAATC
*
75299893 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
75299920 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
75299948 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75299963 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:75300034 original size:42 final size:42
Alignment explanation
Indices: 75299970--75300076 Score: 187
Period size: 42 Copynumber: 2.5 Consensus size: 42
75299960 GCTGTACAAT
* * *
75299970 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATATTGTCACCGTGTCCA
75300012 TTTATACCCGCACACTTAGTGCCAATATTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATATTGTCACCGTGTCCA
75300054 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
75300077 GAGACCAATA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.23, C:0.33, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATATTGTCACCGTGTCCA
Found at i:75302549 original size:17 final size:17
Alignment explanation
Indices: 75302527--75302559 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
75302517 ACTTCCCTTC
75302527 TCATCTTTTCTTTTCTT
1 TCATCTTTTCTTTTCTT
75302544 TCATCTTTTCTTTTCT
1 TCATCTTTTCTTTTCT
75302560 CCATAGCCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.24, G:0.00, T:0.70
Consensus pattern (17 bp):
TCATCTTTTCTTTTCTT
Found at i:75303213 original size:16 final size:15
Alignment explanation
Indices: 75303187--75303217 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
75303177 ACTAGATTGA
75303187 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
75303202 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
75303218 TGGTATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.52, C:0.26, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:75303651 original size:28 final size:28
Alignment explanation
Indices: 75303606--75303744 Score: 163
Period size: 28 Copynumber: 5.0 Consensus size: 28
75303596 GGAGGAAGCG
*
75303606 TTCTAGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
75303634 TTGTGGTGGCTCTACCACAAATATTTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
75303662 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * * *
75303690 TTTTGGTGGCCCTGCCATAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* ** *
75303718 ATCTGGTGATTCTGTCAC-AATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
75303745 CCTAGCAGTC
Statistics
Matches: 92, Mismatches: 19, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
27 8 0.09
28 84 0.91
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:75310373 original size:17 final size:17
Alignment explanation
Indices: 75310351--75310383 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
75310341 ACTTCCCTTC
75310351 TCATCTTTTCTTTTCTT
1 TCATCTTTTCTTTTCTT
75310368 TCATCTTTTCTTTTCT
1 TCATCTTTTCTTTTCT
75310384 CCATAGCCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.24, G:0.00, T:0.70
Consensus pattern (17 bp):
TCATCTTTTCTTTTCTT
Found at i:75311477 original size:28 final size:28
Alignment explanation
Indices: 75311437--75311580 Score: 186
Period size: 28 Copynumber: 5.2 Consensus size: 28
75311427 GGAGGAAGCG
*
75311437 TTCTGGTGGCTCTGCCATAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
75311465 TTCTGGTGGCTCTGCCACAAATATCTAT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
75311493 TTCTGGTGGCTCTACCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
75311521 TTCTGGTGGC-CTTGCCACAATTATCTGT
1 TTCTGGTGGCTC-TGCCACAAATATCTGT
* * * *
75311549 ATATGGTGACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
75311575 TTCTGG
1 TTCTGG
75311581 CAGTCATGCT
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.04
27 8 0.08
28 88 0.87
29 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:75315176 original size:27 final size:27
Alignment explanation
Indices: 75314647--75315176 Score: 545
Period size: 27 Copynumber: 19.6 Consensus size: 27
75314637 AAAGTACTCC
*
75314647 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
75314674 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
** * * *
75314701 CGATTTGTAAAATTACCGTTTTACCAT
1 CGATTTACAGAATTACTGTTTTACCCT
* * *
75314728 CAATTTACAGAATTACCGTATTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* * *
75314755 C-AGTTTATAGAATTACTATTTTACCCA
1 CGA-TTTACAGAATTACTGTTTTACCCT
*
75314782 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
*
75314809 C-AGTTTACAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
* *
75314836 TGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* * *
75314863 CGATTTATAGAATTACCGTTTTATCCT
1 CGATTTACAGAATTACTGTTTTACCCT
** *
75314890 CGATTTGTAAAATTA-TCGTTTTACCCT
1 CGATTTACAGAATTACT-GTTTTACCCT
*
75314917 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
75314944 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
* **
75314971 CGATTTATAGAATTACCATTTTACCC-
1 CGATTTACAGAATTACTGTTTTACCCT
* * ** *
75314997 CTAATTTACATAATTACCATTTTACCCC
1 C-GATTTACAGAATTACTGTTTTACCCT
*
75315025 CGATTTACATAATTA-TCGTTTTACCCT
1 CGATTTACAGAATTACT-GTTTTACCCT
**
75315052 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* * *
75315079 CAATTTATAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
75315106 CGATTTATAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
75315133 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
75315160 CGATTTACAAAATTACT
1 CGATTTACAGAATTACT
75315177 AAAATACCCT
Statistics
Matches: 431, Mismatches: 60, Indels: 24
0.84 0.12 0.05
Matches are distributed among these distances:
26 4 0.01
27 423 0.98
28 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACTGTTTTACCCT
Found at i:75316515 original size:9 final size:9
Alignment explanation
Indices: 75316503--75316579 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
75316493 TTTGATAAAC
75316503 ATGATATGT
1 ATGATATGT
*
75316512 ATGATATGCAC
1 ATGATATG--T
75316523 ATGATATGT
1 ATGATATGT
*
75316532 ATGATATGCAC
1 ATGATATG--T
*
75316543 ATGACATGT
1 ATGATATGT
*
75316552 ATGATATGCAC
1 ATGATATG--T
75316563 ATGATATGT
1 ATGATATGT
75316572 ATGATATG
1 ATGATATG
75316580 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:75316528 original size:11 final size:11
Alignment explanation
Indices: 75316512--75316583 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
75316502 CATGATATGT
75316512 ATGATATGCAC
1 ATGATATGCAC
*
75316523 ATGATATG--T
1 ATGATATGCAC
75316532 ATGATATGCAC
1 ATGATATGCAC
* *
75316543 ATGACATG--T
1 ATGATATGCAC
75316552 ATGATATGCAC
1 ATGATATGCAC
*
75316563 ATGATATG--T
1 ATGATATGCAC
75316572 ATGATATGCAC
1 ATGATATGCAC
75316583 A
1 A
75316584 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:75316591 original size:20 final size:20
Alignment explanation
Indices: 75316501--75316583 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
75316491 ATTTTGATAA
75316501 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
75316521 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
75316541 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
75316561 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
75316581 ACA
1 ACA
75316584 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:75316694 original size:24 final size:23
Alignment explanation
Indices: 75316638--75316804 Score: 237
Period size: 24 Copynumber: 7.0 Consensus size: 23
75316628 GAGGAAGTGA
75316638 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
75316661 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
75316684 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
75316708 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
75316732 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
75316755 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
75316780 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
75316804 A
1 A
75316805 TGATAAAGCA
Statistics
Matches: 132, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
23 44 0.33
24 77 0.58
25 11 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:75316707 original size:47 final size:47
Alignment explanation
Indices: 75316638--75316804 Score: 239
Period size: 47 Copynumber: 3.5 Consensus size: 47
75316628 GAGGAAGTGA
*
75316638 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
*
75316684 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
75316732 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
*
75316780 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
75316805 TGATAAAGCA
Statistics
Matches: 110, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
47 66 0.60
48 32 0.29
49 12 0.11
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:75316754 original size:71 final size:71
Alignment explanation
Indices: 75316638--75316803 Score: 271
Period size: 71 Copynumber: 2.3 Consensus size: 71
75316628 GAGGAAGTGA
*
75316638 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
75316703 GTTATC
66 GTTATC
*
75316709 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
75316774 GTTATT
66 GTTATC
*
75316780 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
75316804 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
71 78 0.88
72 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:75316891 original size:18 final size:18
Alignment explanation
Indices: 75316868--75316907 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
75316858 ATCCCCACAT
75316868 GGTGTGTTGGTTGGTACG
1 GGTGTGTTGGTTGGTACG
75316886 GGTGTGTTGGTTGGTACG
1 GGTGTGTTGGTTGGTACG
75316904 GGTG
1 GGTG
75316908 GAGAGTAGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.05, C:0.05, G:0.53, T:0.38
Consensus pattern (18 bp):
GGTGTGTTGGTTGGTACG
Found at i:75317050 original size:31 final size:31
Alignment explanation
Indices: 75317015--75317078 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
75317005 CGTTTACCGT
*
75317015 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
75317046 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
75317077 AA
1 AA
75317079 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:75318359 original size:22 final size:22
Alignment explanation
Indices: 75318331--75318379 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
75318321 CTAAAGCTCT
*
75318331 TATACCAATAAATGTAACATCC
1 TATACCAATAAATGTAACACCC
*
75318353 TATACCACTAAATGTAACACCC
1 TATACCAATAAATGTAACACCC
75318375 TATAC
1 TATAC
75318380 TCAGCCCGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.43, C:0.27, G:0.04, T:0.27
Consensus pattern (22 bp):
TATACCAATAAATGTAACACCC
Found at i:75321396 original size:17 final size:16
Alignment explanation
Indices: 75321376--75321437 Score: 61
Period size: 17 Copynumber: 3.8 Consensus size: 16
75321366 ACATCAGAAA
75321376 GGAAGATACATGAACTT
1 GGAAGATACATGAA-TT
75321393 GGAAGATACATTGAATT
1 GGAAGATACA-TGAATT
* * *
75321410 GAAAGATTCATGTATT
1 GGAAGATACATGAATT
* *
75321426 TGAAGGTACATG
1 GGAAGATACATG
75321438 CATGGATGGA
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
16 13 0.35
17 20 0.54
18 4 0.11
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (16 bp):
GGAAGATACATGAATT
Found at i:75324104 original size:16 final size:17
Alignment explanation
Indices: 75324072--75324104 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
75324062 AATTAATTGG
*
75324072 TTATCATCTTTTAATTT
1 TTATCATCTTCTAATTT
75324089 TTATCAT-TTCTAATTT
1 TTATCATCTTCTAATTT
75324105 AGTCCTTACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATCATCTTCTAATTT
Found at i:75324866 original size:18 final size:17
Alignment explanation
Indices: 75324843--75324894 Score: 54
Period size: 18 Copynumber: 3.1 Consensus size: 17
75324833 TCGGGGACTT
75324843 TATTTTATCTATCTATCC
1 TATTTTAT-TATCTATCC
*
75324861 TATTTTATTTATCAAT--
1 TATTTTA-TTATCTATCC
*
75324877 TATTTTATTTTCTATCC
1 TATTTTATTATCTATCC
75324894 T
1 T
75324895 TTTAATCTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
15 6 0.21
16 7 0.25
17 1 0.04
18 13 0.46
19 1 0.04
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (17 bp):
TATTTTATTATCTATCC
Found at i:75326524 original size:53 final size:53
Alignment explanation
Indices: 75326435--75326538 Score: 147
Period size: 53 Copynumber: 2.0 Consensus size: 53
75326425 ACTCCCTATG
* * *
75326435 TAACACCCCTAACCCGTAACTAACATTAGATTAGGGTTACAAGGCATTACCTA
1 TAACACCCCTAACCCGTAACCAACATGAGATCAGGGTTACAAGGCATTACCTA
* *
75326488 TAACACCCCTAACCCGTAACCGACATCGA-ATCAGGGTTACGAGGCATTACC
1 TAACACCCCTAACCCGTAACCAACAT-GAGATCAGGGTTACAAGGCATTACC
75326539 AGACAAACAG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
53 44 0.98
54 1 0.02
ACGTcount: A:0.34, C:0.30, G:0.15, T:0.21
Consensus pattern (53 bp):
TAACACCCCTAACCCGTAACCAACATGAGATCAGGGTTACAAGGCATTACCTA
Found at i:75329627 original size:40 final size:40
Alignment explanation
Indices: 75329582--75329749 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
75329572 CGGAATATAA
*
75329582 CCGGATATAAGCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * *
75329622 CCGGATAGAATG-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
75329662 CCGGATAT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAG-CACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
75329702 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
75329742 CCGGATAT
1 CCGGATAT
75329750 CATTCAATTT
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 102 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75329732 original size:80 final size:80
Alignment explanation
Indices: 75329598--75329749 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
75329588 ATAAGCATGT
* *
75329598 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
75329663 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
75329678 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
75329741 CCCGGATAT
64 CCCGGATAT
75329750 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:75337719 original size:40 final size:39
Alignment explanation
Indices: 75337608--75337759 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
75337598 TATAACATGT
* ** *
75337608 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
75337648 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
75337688 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* * *
75337728 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
75337760 CATTCAATTT
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 93 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:75337742 original size:80 final size:80
Alignment explanation
Indices: 75337608--75337759 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
75337598 TATAACATGT
* *
75337608 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
75337673 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
75337688 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
75337751 CCCGGATAT
64 CCCGGATAT
75337760 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:75340946 original size:17 final size:17
Alignment explanation
Indices: 75340915--75340949 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
75340905 AGAAAATTTT
**
75340915 GACTGTATGGGTCACAC
1 GACTGTATGCCTCACAC
75340932 GACTGTATGCCTCACAC
1 GACTGTATGCCTCACAC
75340949 G
1 G
75340950 GCTAAGACAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.23
Consensus pattern (17 bp):
GACTGTATGCCTCACAC
Found at i:75342799 original size:55 final size:54
Alignment explanation
Indices: 75342710--75342965 Score: 237
Period size: 55 Copynumber: 4.8 Consensus size: 54
75342700 CATTAGGGTT
* **
75342710 CAAGGATACCATGTAGGACCATG-CTAAGGTATGGCAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGTC-AAGACATGGCAATTGGTAA-GTTTCTAAGG
* * * *
75342765 CAAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTT--TCTAAGG
* * * * *
75342820 CAAAGG-TCCCACGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGG
1 C-AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTC-TAAGG
75342873 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA--
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGG
* * * *
75342923 -AAGGATACCATGCAAGACCATGACAAGTCAGGGCAA-TGGTAAG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAG
75342966 GTACCCGTGT
Statistics
Matches: 168, Mismatches: 25, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
49 39 0.23
52 7 0.04
53 40 0.24
54 12 0.07
55 65 0.39
56 5 0.03
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.21
Consensus pattern (54 bp):
CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGG
Found at i:75343178 original size:16 final size:16
Alignment explanation
Indices: 75343157--75343187 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75343147 ATAAATTTGA
75343157 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
75343173 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
75343188 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:75348709 original size:46 final size:46
Alignment explanation
Indices: 75348643--75348813 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
75348633 AACCCGCCCC
*
75348643 TAAGTGAACT-GGACTCAACTCAACGAGCTCGGGCGTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
75348688 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCACATCCA
* * * * *
75348736 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
* * *
75348781 TAGGTGAACCCGGACTCAACTCAATGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
75348814 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 11 0.10
46 47 0.45
47 28 0.27
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
Found at i:75348755 original size:93 final size:92
Alignment explanation
Indices: 75348648--75348817 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 92
75348638 GCCCCTAAGT
* * *
75348648 GAACTGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACCCGGACTCAACTCAAC
75348713 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* * *
75348740 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACCCGGACTCAACTCAA
1 GAACT-GGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACCCGGACTCAACTCAA
*
75348805 TGAGTTCGGATGC
65 CGAGTTCGGATGC
75348818 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
92 5 0.07
93 65 0.93
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACCCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:75349270 original size:30 final size:30
Alignment explanation
Indices: 75349236--75349292 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
75349226 ATTTAATACG
75349236 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
75349266 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGAAAAATTACACTTTTGCCC
75349293 TAGGCTCGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:75354825 original size:40 final size:40
Alignment explanation
Indices: 75354717--75354826 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
75354707 ATTGAATGAT
* * * * *
75354717 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
75354757 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
75354797 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
75354827 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:75354841 original size:40 final size:39
Alignment explanation
Indices: 75354717--75354866 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
75354707 ATTGAATGAT
* * * * * * *
75354717 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
75354757 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
75354797 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
75354837 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
75354867 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:75362878 original size:40 final size:40
Alignment explanation
Indices: 75362770--75362879 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
75362760 ATTGAATGAT
* * * * *
75362770 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
75362810 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
75362850 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
75362880 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:75362894 original size:40 final size:39
Alignment explanation
Indices: 75362770--75362919 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
75362760 ATTGAATGAT
* * * * * * *
75362770 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
75362810 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
75362850 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
75362890 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
75362920 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:75365424 original size:40 final size:40
Alignment explanation
Indices: 75365318--75365501 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
75365308 TGCTGGAAAT
* * * * * **
75365318 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
75365358 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
75365398 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
75365436 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
75365477 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
75365502 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:75369578 original size:19 final size:19
Alignment explanation
Indices: 75369554--75369591 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
75369544 TGGAAAGAAG
75369554 TGATCTCGTTCCTCAACTT
1 TGATCTCGTTCCTCAACTT
75369573 TGATCTCGTTCCTCAACTT
1 TGATCTCGTTCCTCAACTT
75369592 AGCATTCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.11, T:0.42
Consensus pattern (19 bp):
TGATCTCGTTCCTCAACTT
Found at i:75369871 original size:21 final size:21
Alignment explanation
Indices: 75369847--75369888 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
75369837 CTGTCTGAAG
75369847 CATCTGGAACATGACTGGCTT
1 CATCTGGAACATGACTGGCTT
75369868 CATCTGGAACATGACTGGCTT
1 CATCTGGAACATGACTGGCTT
75369889 TAGTCGATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (21 bp):
CATCTGGAACATGACTGGCTT
Found at i:75376309 original size:29 final size:28
Alignment explanation
Indices: 75376277--75376379 Score: 107
Period size: 29 Copynumber: 3.6 Consensus size: 28
75376267 GGGACGAGAT
* *
75376277 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* * *
75376306 TGGCACTAAGTGTGTGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
75376335 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
75376364 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75376380 TGATTGAGTA
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 3 0.05
29 56 0.93
30 1 0.02
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.30
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:75378221 original size:19 final size:19
Alignment explanation
Indices: 75378197--75378248 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
75378187 TGGGTTCTTG
75378197 GGCCCAATTTTCAATCTCA
1 GGCCCAATTTTCAATCTCA
*
75378216 GGCCCAATTTTCGATCTCA
1 GGCCCAATTTTCAATCTCA
* *
75378235 AGTCCAATTTTCAA
1 GGCCCAATTTTCAA
75378249 GTTCAATTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (19 bp):
GGCCCAATTTTCAATCTCA
Found at i:75387852 original size:18 final size:18
Alignment explanation
Indices: 75387809--75387857 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
75387799 ACATTGATGC
75387809 TGCTGAAGAAGAAGTTGT
1 TGCTGAAGAAGAAGTTGT
**
75387827 TG-TCGAAGCGGAAGTTGT
1 TGCT-GAAGAAGAAGTTGT
75387845 TGCTGAAGAAGAA
1 TGCTGAAGAAGAA
75387858 AAAGTTGCTA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 1 0.04
18 23 0.92
19 1 0.04
ACGTcount: A:0.33, C:0.08, G:0.35, T:0.24
Consensus pattern (18 bp):
TGCTGAAGAAGAAGTTGT
Found at i:75391310 original size:34 final size:35
Alignment explanation
Indices: 75391249--75391336 Score: 101
Period size: 34 Copynumber: 2.5 Consensus size: 35
75391239 AATATGCACA
*
75391249 TTCAAAATAACTTCACATAAAACCGAATATAT-AAG
1 TTCAATATAACTTCACATAAAACCGAATA-ATCAAG
** *
75391284 TTCAATATAA-TTCACATGTAATCGAATAATCAAG
1 TTCAATATAACTTCACATAAAACCGAATAATCAAG
75391318 TTCAATATAAGCTT-ACATA
1 TTCAATATAA-CTTCACATA
75391337 TACTTACCTA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
33 2 0.04
34 28 0.62
35 13 0.29
36 2 0.04
ACGTcount: A:0.47, C:0.16, G:0.07, T:0.31
Consensus pattern (35 bp):
TTCAATATAACTTCACATAAAACCGAATAATCAAG
Found at i:75392139 original size:30 final size:29
Alignment explanation
Indices: 75392105--75392169 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
75392095 ATACTCATAC
*
75392105 TAGTCCAT-ATATTTCATTTATTTTT-CATTT
1 TAGTCCATCA-ATTT-A-TTATTTTTGCAATT
*
75392135 TAGTCCTTCAATTTATTATTTTTGCAATT
1 TAGTCCATCAATTTATTATTTTTGCAATT
75392164 TAGTCC
1 TAGTCC
75392170 TATTAACGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 8 0.26
29 11 0.35
30 11 0.35
31 1 0.03
ACGTcount: A:0.23, C:0.15, G:0.06, T:0.55
Consensus pattern (29 bp):
TAGTCCATCAATTTATTATTTTTGCAATT
Found at i:75392744 original size:13 final size:13
Alignment explanation
Indices: 75392726--75392750 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75392716 ACAAACAAAC
75392726 AAATTTTCATACG
1 AAATTTTCATACG
75392739 AAATTTTCATAC
1 AAATTTTCATAC
75392751 ATGTAAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (13 bp):
AAATTTTCATACG
Found at i:75395506 original size:20 final size:20
Alignment explanation
Indices: 75395481--75395518 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
75395471 GTTTATTCGC
*
75395481 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
75395501 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
75395519 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:75397177 original size:28 final size:28
Alignment explanation
Indices: 75397145--75397203 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
75397135 GCGTAGATCA
75397145 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
75397173 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
75397201 CGA
1 CGA
75397204 TATACCCTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:75403513 original size:20 final size:20
Alignment explanation
Indices: 75403488--75403525 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
75403478 GTTTATTCGC
*
75403488 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
75403508 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
75403526 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:75405184 original size:28 final size:28
Alignment explanation
Indices: 75405152--75405220 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
75405142 GCGTAGATCA
75405152 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
75405180 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
75405208 CGATA-TACCCCTA
1 CGAAATTACCCCTA
75405221 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:75411544 original size:40 final size:39
Alignment explanation
Indices: 75411487--75411669 Score: 223
Period size: 40 Copynumber: 4.7 Consensus size: 39
75411477 TCGAATGATG
* *
75411487 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
*
75411527 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
75411566 TTCCGGGCTAAG--CCGAAGGCA-TTGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
75411604 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
75411644 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75411670 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 8, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
37 24 0.19
38 11 0.09
39 11 0.09
40 73 0.57
41 8 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:75411624 original size:77 final size:79
Alignment explanation
Indices: 75411487--75411667 Score: 226
Period size: 77 Copynumber: 2.3 Consensus size: 79
75411477 TCGAATGATG
* *
75411487 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
75411552 GTGCGAGTTACTA-A
65 GTGCGAGTTACTATA
* * **
75411566 TTCCGGGCTAAG-CCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 -TCCGGGCTAAGCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
75411628 TGTGCGAGTTACTATA
64 TGTGCGAGTTACTATA
* *
75411644 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATT
75411668 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 8, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
76 1 0.01
77 51 0.57
78 15 0.17
79 11 0.12
80 11 0.12
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTATA
Found at i:75419708 original size:39 final size:40
Alignment explanation
Indices: 75419600--75419784 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
75419590 TCGAATGATG
* * *
75419600 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
75419639 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
75419680 TCCGGGCTAAG-CCCAAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
75419719 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
75419758 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
75419785 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:75419806 original size:79 final size:79
Alignment explanation
Indices: 75419653--75419817 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
75419643 GGACTAAGAT
* **
75419653 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCAAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
*
75419718 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
75419732 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAACGAGTTA-C
* *
75419795 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
75419811 CCGAAGG
1 CCGAAGG
75419818 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.66
80 23 0.31
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:75426206 original size:45 final size:43
Alignment explanation
Indices: 75426123--75426242 Score: 134
Period size: 45 Copynumber: 2.7 Consensus size: 43
75426113 GACGAAAGCT
*
75426123 AGTGTAAGACAGGTCTGGGACATGCATCAGCCTCGAGATGTAATC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCTCGAGATGT-ATC
* * * *
75426168 TA-TGTAAGACATGTATGGGACATGCATCGGCTATGAGATGTGTC
1 -AGTGTAAGACATGTCTGGGACATGCATCGCCT-CGAGATGTATC
75426212 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
75426243 ACATTACACC
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
43 1 0.02
44 12 0.19
45 44 0.69
46 7 0.11
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (43 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCTCGAGATGTATC
Found at i:75431306 original size:43 final size:42
Alignment explanation
Indices: 75431173--75431326 Score: 200
Period size: 42 Copynumber: 3.6 Consensus size: 42
75431163 TGAGATTATG
*
75431173 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
1 TGTAAGACCATATCTAGGATATGGCATCGATATGAGATTTCA
* * * * *
75431215 TGTAAGACCATATCTAAGATATGGTATTGATATGATATTTCG
1 TGTAAGACCATATCTAGGATATGGCATCGATATGAGATTTCA
* * *
75431257 TGTAAGACCATAGCTAGGCTATTGGCATCGATACGAGATTTCA
1 TGTAAGACCATATCTAGGATA-TGGCATCGATATGAGATTTCA
* *
75431300 TGTAAGACCATATTTGGGATATGGCAT
1 TGTAAGACCATATCTAGGATATGGCAT
75431327 TGGTAAGGTA
Statistics
Matches: 93, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 60 0.65
43 33 0.35
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGATATGGCATCGATATGAGATTTCA
Found at i:75431321 original size:85 final size:84
Alignment explanation
Indices: 75431172--75431328 Score: 233
Period size: 85 Copynumber: 1.9 Consensus size: 84
75431162 CTGAGATTAT
* * *
75431172 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCATGTAAGACCATATCTAAGATAT
1 GTGTAAGACCATAGCTAGGATATGGCATCGATACGAGATTTCATGTAAGACCATATCTAAGATAT
*
75431237 GGTATTGATATGATATTTC
66 GGCATTGATATGATATTTC
* * **
75431256 GTGTAAGACCATAGCTAGGCTATTGGCATCGATACGAGATTTCATGTAAGACCATATTTGGGATA
1 GTGTAAGACCATAGCTAGGATA-TGGCATCGATACGAGATTTCATGTAAGACCATATCTAAGATA
75431321 TGGCATTG
65 TGGCATTG
75431329 GTAAGGTACT
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
84 19 0.30
85 45 0.70
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (84 bp):
GTGTAAGACCATAGCTAGGATATGGCATCGATACGAGATTTCATGTAAGACCATATCTAAGATAT
GGCATTGATATGATATTTC
Found at i:75447113 original size:18 final size:18
Alignment explanation
Indices: 75447090--75447125 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
75447080 AGTAGCTTGA
75447090 GTAAGAACACTATCTAGC
1 GTAAGAACACTATCTAGC
75447108 GTAAGAACACTATCTAGC
1 GTAAGAACACTATCTAGC
75447126 TCATTCATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (18 bp):
GTAAGAACACTATCTAGC
Found at i:75450433 original size:50 final size:50
Alignment explanation
Indices: 75450354--75450462 Score: 139
Period size: 50 Copynumber: 2.2 Consensus size: 50
75450344 ACATACTTTA
* *
75450354 AATTCTACAGTCATGATTATGCAACCACAAACCTTAAATTTTGTAG-CAC
1 AATTCTACAGTCATGATTATACAACCACAAACCTTAAATTCTGTAGTCAC
* * * * *
75450403 AGATTCTATAGTCATGATTTTACCATCACAAACCTTAGATTCTGTAGTCAC
1 A-ATTCTACAGTCATGATTATACAACCACAAACCTTAAATTCTGTAGTCAC
75450454 AATTCTACA
1 AATTCTACA
75450463 ACCACATACT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
49 1 0.02
50 45 0.90
51 4 0.08
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.33
Consensus pattern (50 bp):
AATTCTACAGTCATGATTATACAACCACAAACCTTAAATTCTGTAGTCAC
Found at i:75455509 original size:21 final size:21
Alignment explanation
Indices: 75455479--75455524 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
75455469 AACTTTTGTC
* *
75455479 AAATATAAATATCACATTAAA
1 AAATACAAATATCACATAAAA
*
75455500 AAATACAAATATCATATAAAA
1 AAATACAAATATCACATAAAA
75455521 AAAT
1 AAAT
75455525 CCAACTTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (21 bp):
AAATACAAATATCACATAAAA
Found at i:75457976 original size:96 final size:91
Alignment explanation
Indices: 75457727--75458039 Score: 383
Period size: 96 Copynumber: 3.4 Consensus size: 91
75457717 TTATCTTCGA
* * * * * **
75457727 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTTTGTCATGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCAGTCATGTTGCCATGGTATCTT
**
75457792 TCAACCATGGTCTTATTCATTTCCCAT
65 TCAACCATGGTCTTATTCATTTCATAT
* * * *
75457819 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTCCCGTCATGTTGTCATGGTATCTTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCAGTCATGTTGCCATGGTATCTTT
* *
75457884 CAACCATGGTCTTATTCTTTTCATGT
66 CAACCATGGTCTTATTCATTTCATAT
**
75457910 CACATTGCCATGGTATCTTTCAATGTTGCCATGGTCTTATTCTTTTCAGTCATGTTGCCATGGTA
1 CATGTTGCCATGGTATCTTTCAA-----CCATGGTCTTATTCTTTTCAGTCATGTTGCCATGGTA
* **
75457975 TCTTTCAACCATAGTCTTACACATTTCATAT
61 TCTTTCAACCATGGTCTTATTCATTTCATAT
*
75458006 CATGTTGCCATGGTACCTTTCAACCATGGTCTTA
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA
75458040 CACATTTCAT
Statistics
Matches: 188, Mismatches: 28, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
91 77 0.41
92 32 0.17
96 79 0.42
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (91 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCAGTCATGTTGCCATGGTATCTTT
CAACCATGGTCTTATTCATTTCATAT
Found at i:75458040 original size:46 final size:46
Alignment explanation
Indices: 75457727--75458049 Score: 371
Period size: 46 Copynumber: 7.0 Consensus size: 46
75457717 TTATCTTCGA
* * * * * **
75457727 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTTTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
***
75457773 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
**
75457819 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* *
75457864 CATGTTGTCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
** *
75457910 CACATTGCCATGGTATCTTTCAATGTTGCCATGGTCTTATTCTTTTCA-GT
1 CATGTTGCCATGGTATCTTTCAA-----CCATGGTCTTATTCATTTCATGT
* ** *
75457960 CATGTTGCCATGGTATCTTTCAACCATAGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* **
75458006 CATGTTGCCATGGTACCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
75458050 TTCAGAAAGC
Statistics
Matches: 244, Mismatches: 26, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
45 58 0.24
46 143 0.59
50 23 0.09
51 20 0.08
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
Found at i:75458054 original size:96 final size:91
Alignment explanation
Indices: 75457727--75458048 Score: 383
Period size: 91 Copynumber: 3.5 Consensus size: 91
75457717 TTATCTTCGA
* * * * * **
75457727 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTTTGTCATGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCAGTCATGTTGCCATGGTATCTT
**
75457792 TCAACCATGGTCTTATTCATTTCCCAT
65 TCAACCATGGTCTTATTCATTTCATAT
* * *
75457819 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTCCCGTCATGTTGTCATGGTATCTTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAGTCATGTTGCCATGGTATCTTT
* *
75457884 CAACCATGGTCTTATTCTTTTCATGT
66 CAACCATGGTCTTATTCATTTCATAT
** *
75457910 CACATTGCCATGGTATCTTTCAATGTTGCCATGGTCTTATTCTTTTCAGTCATGTTGCCATGGTA
1 CATGTTGCCATGGTATCTTTCAA-----CCATGGTCTTATTCATTTCAGTCATGTTGCCATGGTA
* **
75457975 TCTTTCAACCATAGTCTTACACATTTCATAT
61 TCTTTCAACCATGGTCTTATTCATTTCATAT
* **
75458006 CATGTTGCCATGGTACCTTTCAACCATGGTCTTACACATTTCA
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCA
75458049 TTTCAGAAAG
Statistics
Matches: 195, Mismatches: 30, Indels: 11
0.83 0.13 0.05
Matches are distributed among these distances:
91 83 0.43
92 33 0.17
96 79 0.41
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (91 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAGTCATGTTGCCATGGTATCTTT
CAACCATGGTCTTATTCATTTCATAT
Found at i:75458886 original size:3 final size:3
Alignment explanation
Indices: 75458878--75458907 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
75458868 TATTTATTTT
75458878 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC
1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC
75458908 ATTCCACATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (3 bp):
TCC
Found at i:75460333 original size:47 final size:47
Alignment explanation
Indices: 75460263--75460416 Score: 263
Period size: 47 Copynumber: 3.3 Consensus size: 47
75460253 CCCTTCGGGA
* *
75460263 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
* *
75460310 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
*
75460357 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
75460404 CTTATCACATATA
1 CTTATCACATATA
75460417 CATATCTTGT
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 100 1.00
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:75463076 original size:11 final size:11
Alignment explanation
Indices: 75463060--75463107 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
75463050 CTTTATATAC
75463060 TAATAAAATAA
1 TAATAAAATAA
*
75463071 TAATAAAATATCT
1 TAATAAAATA--A
* *
75463084 TATTAAAATAT
1 TAATAAAATAA
75463095 TAATAAAATAA
1 TAATAAAATAA
75463106 TA
1 TA
75463108 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:75465149 original size:28 final size:28
Alignment explanation
Indices: 75465117--75465207 Score: 128
Period size: 28 Copynumber: 3.2 Consensus size: 28
75465107 AAACAAGAAA
*
75465117 CTATATCTCGATTATAAATAGTTGTCAG
1 CTATATCTCGATTATAAATAGTTGTTAG
* *
75465145 CTATATCTCAATTATACATAGTTGTTAG
1 CTATATCTCGATTATAAATAGTTGTTAG
* *
75465173 CTATATCTCGAATATATATAGTTGTTAG
1 CTATATCTCGATTATAAATAGTTGTTAG
75465201 CTGATAT
1 CT-ATAT
75465208 ATTGTATTAA
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
28 52 0.93
29 4 0.07
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (28 bp):
CTATATCTCGATTATAAATAGTTGTTAG
Found at i:75466867 original size:29 final size:29
Alignment explanation
Indices: 75466804--75466867 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
75466794 TTCAATCAAA
* *
75466804 TAAAGAAAGTGAGAATTATATTAAAAAAAG
1 TAAA-AAAGTGAGAATCAAATTAAAAAAAG
* *
75466834 AAAAAAAGTGAGAATCAAATTAAAAAAAT
1 TAAAAAAGTGAGAATCAAATTAAAAAAAG
75466863 TAAAA
1 TAAAA
75466868 GACGTATAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 26 0.90
30 3 0.10
ACGTcount: A:0.66, C:0.02, G:0.12, T:0.20
Consensus pattern (29 bp):
TAAAAAAGTGAGAATCAAATTAAAAAAAG
Found at i:75467009 original size:28 final size:29
Alignment explanation
Indices: 75466957--75467030 Score: 100
Period size: 28 Copynumber: 2.7 Consensus size: 29
75466947 ATAAATCTAA
*
75466957 CAAATTCAATTAATCAA-T-ATGAGTTAT
1 CAAATTCAAGTAATCAATTAATGAGTTAT
*
75466984 CAAATT-AAGTAATTAATTAATGAGTTAT
1 CAAATTCAAGTAATCAATTAATGAGTTAT
*
75467012 TAAATTCAAGTAATCAATT
1 CAAATTCAAGTAATCAATT
75467031 TATAAGCAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
26 8 0.20
27 7 0.17
28 14 0.35
29 11 0.28
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (29 bp):
CAAATTCAAGTAATCAATTAATGAGTTAT
Found at i:75467581 original size:20 final size:20
Alignment explanation
Indices: 75467558--75467611 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
75467548 AATTAATATA
75467558 ATTATAATATATTGTATTAT
1 ATTATAATATATTGTATTAT
*
75467578 ATTATATTATATAAATGTATTAT
1 ATTATA--ATAT-ATTGTATTAT
*
75467601 -TTATAAAATAT
1 ATTATAATATAT
75467612 AAAGTTACCT
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
19 1 0.04
20 9 0.32
22 9 0.32
23 9 0.32
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (20 bp):
ATTATAATATATTGTATTAT
Found at i:75467609 original size:16 final size:18
Alignment explanation
Indices: 75467577--75467609 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75467567 TATTGTATTA
75467577 TATTATATTATATAAATG
1 TATTATATTATATAAATG
75467595 TATTAT-TTATA-AAAT
1 TATTATATTATATAAAT
75467610 ATAAAGTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 5 0.33
18 6 0.40
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (18 bp):
TATTATATTATATAAATG
Found at i:75467611 original size:22 final size:23
Alignment explanation
Indices: 75467570--75467614 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
75467560 TATAATATAT
**
75467570 TGTATTATATTATATTATATAAA
1 TGTATTATATTATAAAATATAAA
75467593 TGTATTAT-TTATAAAATATAAA
1 TGTATTATATTATAAAATATAAA
75467615 GTTACCTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (23 bp):
TGTATTATATTATAAAATATAAA
Found at i:75469078 original size:253 final size:253
Alignment explanation
Indices: 75468630--75469354 Score: 1227
Period size: 253 Copynumber: 2.9 Consensus size: 253
75468620 TGAAGTGGAT
* *
75468630 ATTAAGATTCTCTCGTTTCGAAGAAATACAATATCACATCCAGCACGTAGGACACGACATTTCAA
1 ATTAAGATTCTCTTGTTTCGAAGAAATAAAATATCACATCCAGCACGTAGGACACGACATTTCAA
* *
75468695 ACCTTCGATACCAAAATCATCTCATGATTTCTGAAACTTATGCATTGAAATTTTGAAAAGGATAT
66 ACCTTCGATACCAAAATCATCTCATGATTTCCGAAACTTATGCATTGAAATTTTAAAAAGGATAT
* *
75468760 TCGGTCGTTCGGTCAAACGATAAATCGAAACCCAGCACGTAGGGCACAATTTATCAAAATTTCCA
131 TCGGTCGTTCGGTCAAACGATAAATCGAAACCCAGCACGTAGGGCACAATTTCTCGAAATTTCCA
* * *
75468825 AACGCGAAATATTGCCTTGTTTAAGAAGTCTCGAATAAAAATGCAACAGTATGAAACG
196 AACACAAAATATTGCCTTGTTTAAGAAATCTCGAATAAAAATGCAACAGTATGAAACG
*
75468883 ATTAAGATTCTCTTGTTTCGAAGAAATAAAATATCACATCCAGCACGTAGGACACAACATTTCAA
1 ATTAAGATTCTCTTGTTTCGAAGAAATAAAATATCACATCCAGCACGTAGGACACGACATTTCAA
75468948 ACCTTCGATACCAAAATCATCTCATGATTTCCGAAACTTATGCATTGAAATTTTAAAAAGGATAT
66 ACCTTCGATACCAAAATCATCTCATGATTTCCGAAACTTATGCATTGAAATTTTAAAAAGGATAT
* *
75469013 TCGGTCGTTCGGTCAAACGATAAATCGAAGCCCAGCATGTAGGGCACAATTTCTCGAAATTTCCA
131 TCGGTCGTTCGGTCAAACGATAAATCGAAACCCAGCACGTAGGGCACAATTTCTCGAAATTTCCA
*
75469078 AACACAAAATATTGCATTGTTTAAGAAATCTCGAATAAAAATGCAACAGTATGAAACG
196 AACACAAAATATTGCCTTGTTTAAGAAATCTCGAATAAAAATGCAACAGTATGAAACG
*
75469136 ATTAAGATTTTCTTGTTTCGAAGAAATAAAATATCACATCCAGCACGTAGGACACGACATTTCAA
1 ATTAAGATTCTCTTGTTTCGAAGAAATAAAATATCACATCCAGCACGTAGGACACGACATTTCAA
* *
75469201 ACCTTCGATACCAAAATCATCTCATAATTT-CTAGAACTTATGCATTGAAATTTTTTAAAAAGGA
66 ACCTTCGATACCAAAATCATCTCATGATTTCCGA-AACTTATGCATTGAAA--TTTTAAAAAGGA
* *
75469265 TATTCGGTCGTTCGGTCAAACGATAAATCGAAACCCAACACGTAGGGCACAATTTCTTGAAATTT
128 TATTCGGTCGTTCGGTCAAACGATAAATCGAAACCCAGCACGTAGGGCACAATTTCTCGAAATTT
** *
75469330 CTGAACACAAAATATTGTCTTGTTT
193 CCAAACACAAAATATTGCCTTGTTT
75469355 GAAAATTTTC
Statistics
Matches: 444, Mismatches: 25, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
252 2 0.00
253 348 0.78
255 94 0.21
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.28
Consensus pattern (253 bp):
ATTAAGATTCTCTTGTTTCGAAGAAATAAAATATCACATCCAGCACGTAGGACACGACATTTCAA
ACCTTCGATACCAAAATCATCTCATGATTTCCGAAACTTATGCATTGAAATTTTAAAAAGGATAT
TCGGTCGTTCGGTCAAACGATAAATCGAAACCCAGCACGTAGGGCACAATTTCTCGAAATTTCCA
AACACAAAATATTGCCTTGTTTAAGAAATCTCGAATAAAAATGCAACAGTATGAAACG
Found at i:75469744 original size:3 final size:3
Alignment explanation
Indices: 75469732--75469785 Score: 101
Period size: 3 Copynumber: 18.3 Consensus size: 3
75469722 ATAGATATGG
75469732 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
75469779 ATA ATA A
1 ATA ATA A
75469786 ATCGAAACAA
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 48 0.96
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:75470910 original size:8 final size:8
Alignment explanation
Indices: 75470889--75470929 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
75470879 AAGTAGATTT
75470889 ATAAT-AA
1 ATAATAAA
75470896 A-AATAAA
1 ATAATAAA
75470903 ATAATAAA
1 ATAATAAA
75470911 AT-ATAAA
1 ATAATAAA
*
75470918 AAAATAAA
1 ATAATAAA
75470926 ATAA
1 ATAA
75470930 AATATAGAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
6 3 0.10
7 10 0.34
8 16 0.55
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (8 bp):
ATAATAAA
Found at i:75470918 original size:15 final size:15
Alignment explanation
Indices: 75470889--75470928 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
75470879 AAGTAGATTT
75470889 ATAATAAAA-ATAAA
1 ATAATAAAATATAAA
75470903 ATAATAAAATATAAA
1 ATAATAAAATATAAA
*
75470918 AAAATAAAATA
1 ATAATAAAATA
75470929 AAATATAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 9 0.38
15 15 0.62
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
ATAATAAAATATAAA
Found at i:75470928 original size:20 final size:21
Alignment explanation
Indices: 75470892--75470935 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
75470882 TAGATTTATA
75470892 ATAAAAATAAAATAATAAAAT
1 ATAAAAATAAAATAATAAAAT
75470913 ATAAAAA-AATAA-AATAAAAT
1 ATAAAAATAA-AATAATAAAAT
75470933 ATA
1 ATA
75470936 GAAGAACGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (21 bp):
ATAAAAATAAAATAATAAAAT
Found at i:75471162 original size:20 final size:19
Alignment explanation
Indices: 75471122--75471162 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
75471112 TGCTTGTTGC
* *
75471122 TTGCTGTTTCTTTTCTGTT
1 TTGCTGTTTCTTTGCTCTT
75471141 TTGCGTGTTTCTTTGCTCTT
1 TTGC-TGTTTCTTTGCTCTT
75471161 TT
1 TT
75471163 TTGTTCTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.00, C:0.17, G:0.17, T:0.66
Consensus pattern (19 bp):
TTGCTGTTTCTTTGCTCTT
Found at i:75475351 original size:26 final size:26
Alignment explanation
Indices: 75475320--75475427 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
75475310 TGAAATTCCC
75475320 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
75475346 ATCATGGAACATTTACC-CAACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
* *
75475372 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
75475398 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
75475424 ATCA
1 ATCA
75475428 ATTTGTATCA
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
25 3 0.04
26 69 0.93
27 2 0.03
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:75477085 original size:39 final size:39
Alignment explanation
Indices: 75477031--75477125 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 39
75477021 GAATCACGTA
*
75477031 CCTTCGGGAT-TTAACCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCGGATATAACAACAAGCACAATTG
* *** **
75477070 CCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCTTCGGGTCTTAA-CCGGATATAACAACAAGCACAATTG
75477110 CCTTCGGGTCTTAACC
1 CCTTCGGGTCTTAACC
75477126 CGGGTTTAGT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
38 1 0.02
39 14 0.30
40 32 0.68
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.28
Consensus pattern (39 bp):
CCTTCGGGTCTTAACCGGATATAACAACAAGCACAATTG
Found at i:75477105 original size:40 final size:40
Alignment explanation
Indices: 75477061--75477183 Score: 185
Period size: 40 Copynumber: 3.1 Consensus size: 40
75477051 ATAACCACAA
* *
75477061 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAACCCGGATTTAGTAACTC
*
75477101 GCACAATTGCCTTCGGGTCTTAACCCGGGTTTAGTAACTC
1 GCACAATTGCCTTCGGGTCTTAACCCGGATTTAGTAACTC
* * *
75477141 GCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTC
1 GCACAATTGCCTTCGGGTCTTAACCCGGATTTAGTAACTC
75477180 GCAC
1 GCAC
75477184 GAACGCCTTC
Statistics
Matches: 76, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
39 23 0.30
40 53 0.70
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAACCCGGATTTAGTAACTC
Found at i:75477192 original size:79 final size:81
Alignment explanation
Indices: 75477060--75477248 Score: 197
Period size: 79 Copynumber: 2.4 Consensus size: 81
75477050 TATAACCACA
* * * * * * * *
75477060 AGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAAC
1 AGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAATCGCCTTCGGATCTCAAC
* *
75477125 CCGGGTTTAGTAAC-T
66 CCGGATATAGTAACTT
* * *
75477140 CGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAA-CGCCTTCGGATCTCAG
1 AGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC-AATCGCCTTCGGATCTCAA
* *
75477203 TCCGGATATAGTCACTT
65 CCCGGATATAGTAACTT
*
75477220 AACACAAA-GCCTTCGGGACTTAGCCCGGA
1 AGCACAAATGCCTTCGGGACTTAGCCCGGA
75477249 CATCATTCAA
Statistics
Matches: 90, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
79 54 0.60
80 36 0.40
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (81 bp):
AGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAATCGCCTTCGGATCTCAAC
CCGGATATAGTAACTT
Done.