Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 244 of 410
Found at i:75477248 original size:40 final size:39
Alignment explanation
Indices: 75477069--75477248 Score: 112
Period size: 40 Copynumber: 4.5 Consensus size: 39
75477059 AAGCACAATT
* * * * ** *
75477069 GCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATAGTAACTAACACAA-A
* * * * **
75477109 GCCTTCGGGTCTTAACCCGGGTTTAGTAACTCGCACAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTAACTAACACAAA
* * ** *
75477148 TGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAAC
1 -GCCTTCGGGACTTAGCCCGGATATAGTAACTAACAC-AAA
* * *
75477188 GCCTTC-GGATCTCAGTCCGGATATAGTCACTTAACACAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAACACAAA
75477228 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
75477249 CATCATTCAA
Statistics
Matches: 116, Mismatches: 18, Indels: 12
0.79 0.12 0.08
Matches are distributed among these distances:
38 2 0.02
39 29 0.25
40 78 0.67
41 7 0.06
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGACTTAGCCCGGATATAGTAACTAACACAAA
Found at i:75480469 original size:16 final size:17
Alignment explanation
Indices: 75480427--75480470 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
75480417 CTATTGAATC
*
75480427 AATTAATTTAATTAACTA
1 AATTAATTT-TTTAACTA
*
75480445 AATTAATTTTTTAATTA
1 AATTAATTTTTTAACTA
75480462 AA-TAATTTT
1 AATTAATTTT
75480471 CTCAATCCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 7 0.29
17 8 0.33
18 9 0.38
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
AATTAATTTTTTAACTA
Found at i:75483495 original size:40 final size:40
Alignment explanation
Indices: 75483399--75483617 Score: 278
Period size: 40 Copynumber: 5.5 Consensus size: 40
75483389 CGAATGATGT
* * * *
75483399 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
75483440 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
75483480 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
75483520 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
75483560 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
75483600 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
75483618 ACAATCGAGC
Statistics
Matches: 159, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
40 134 0.84
41 25 0.16
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:75483613 original size:120 final size:121
Alignment explanation
Indices: 75483399--75483617 Score: 325
Period size: 120 Copynumber: 1.8 Consensus size: 121
75483389 CGAATGATGT
* *
75483399 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
75483464 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
75483520 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* * *
75483583 TGTGCGAATTACTATAACCGGGCTATGTCCCGAAG
65 TGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
75483618 ACAATCGAGC
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
119 1 0.01
120 60 0.69
121 26 0.30
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:75483642 original size:80 final size:80
Alignment explanation
Indices: 75483398--75483643 Score: 197
Period size: 80 Copynumber: 3.1 Consensus size: 80
75483388 TCGAATGATG
** * * * * * * *
75483398 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGG-TCAATTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCAATTGTGCGAA-TTACCAAAACCGGGCT-AAGTCCCGAAGACAA
* * * *
75483462 TTGTGCGAGTTACCAAA
64 TCGAGCGAGTCACTAAA
* * * * * * * *
75483479 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACAATC
* *
75483544 GTGCGAGTTACTAAA
66 GAGCGAGTCACTAAA
* * * *
75483559 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGACAATC
1 TCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACAATC
* * *
75483624 GAGCTAGTCGCTACA
66 GAGCGAGTCACTAAA
75483639 TCCGG
1 TCCGG
75483644 TTAAATTCCG
Statistics
Matches: 137, Mismatches: 27, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
80 109 0.80
81 28 0.20
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACAATC
GAGCGAGTCACTAAA
Found at i:75490792 original size:2 final size:2
Alignment explanation
Indices: 75490785--75490810 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
75490775 CGGCTCTAGC
75490785 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
75490811 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75491620 original size:40 final size:40
Alignment explanation
Indices: 75491519--75491741 Score: 205
Period size: 40 Copynumber: 5.5 Consensus size: 40
75491509 CGAATGATGT
* * * *
75491519 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
75491560 CCGAG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
75491600 CCGGGTTAAGTCCCGGAGGCATTTGTGTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCA--T-T-TGTGCGAGTTACTAAAA
* * * *
75491644 TCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
75491684 CCAGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
75491724 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
75491742 ACAATCAAGC
Statistics
Matches: 149, Mismatches: 27, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
40 85 0.57
41 25 0.17
42 2 0.01
43 1 0.01
44 36 0.24
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:75491642 original size:44 final size:44
Alignment explanation
Indices: 75491583--75491672 Score: 162
Period size: 44 Copynumber: 2.0 Consensus size: 44
75491573 CGAAGGCATT
*
75491583 TGTGCGAGTTACCAAAACCGGGTTAAGTCCCGGAGGCATTTGTG
1 TGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTG
*
75491627 TGTGCGAGTTACCAAAATCGGGTTAAGTCCCGAAGGCATTTGTG
1 TGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTG
75491671 TG
1 TG
75491673 AGTTACTAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (44 bp):
TGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTG
Found at i:75493212 original size:40 final size:40
Alignment explanation
Indices: 75493167--75493333 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
75493157 CGGAATATAA
75493167 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
75493207 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
75493247 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
75493287 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
75493326 CCGGATAT
1 CCGGATAT
75493334 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75493317 original size:80 final size:79
Alignment explanation
Indices: 75493183--75493333 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
75493173 ATAATCACGT
*
75493183 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
75493248 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
75493263 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
75493326 CCGGATAT
64 CCGGATAT
75493334 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:75500327 original size:16 final size:16
Alignment explanation
Indices: 75500298--75500332 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
75500288 AATTAGGTTG
*
75500298 AAAAAATTATTTAATT
1 AAAAAATTAATTAATT
*
75500314 AAAAATTTAATTAATT
1 AAAAAATTAATTAATT
75500330 AAA
1 AAA
75500333 TAGTATTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AAAAAATTAATTAATT
Found at i:75508303 original size:26 final size:26
Alignment explanation
Indices: 75508273--75508354 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
75508263 TGAAATGCCC
75508273 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
75508299 ATCATGAAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
*
75508325 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
75508351 ATCA
1 ATCA
75508355 ATTTTTATAA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:75512737 original size:19 final size:19
Alignment explanation
Indices: 75512707--75512751 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
75512697 GAAAATCGCG
*
75512707 TTTTTTGCAAAATTTTTTT
1 TTTTTTGCAAAATTTTTAT
75512726 TGTTTTTG-AAAATTTTTAT
1 T-TTTTTGCAAAATTTTTAT
75512745 TTTTTTG
1 TTTTTTG
75512752 TAAACTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 6 0.25
19 12 0.50
20 6 0.25
ACGTcount: A:0.20, C:0.02, G:0.09, T:0.69
Consensus pattern (19 bp):
TTTTTTGCAAAATTTTTAT
Found at i:75513796 original size:27 final size:26
Alignment explanation
Indices: 75513721--75513828 Score: 99
Period size: 27 Copynumber: 4.0 Consensus size: 26
75513711 TGGCTGCTAA
* * *
75513721 AACAGATAATGTGACAAAGTCACCAG
1 AACAAATAATGTGACAGAGCCACCAG
* *
75513747 ATACAGATAATCGTGGCAGAGCCACCAG
1 A-ACAAATAAT-GTGACAGAGCCACCAG
75513775 AACAAATATATGTGACAGAGCCACCAG
1 AACAAATA-ATGTGACAGAGCCACCAG
* * * *
75513802 ATCAAATATTTGTGGCATAGCCACCAG
1 AACAAATA-ATGTGACAGAGCCACCAG
75513829 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 53 0.76
28 16 0.23
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (26 bp):
AACAAATAATGTGACAGAGCCACCAG
Found at i:75517271 original size:29 final size:29
Alignment explanation
Indices: 75517071--75517259 Score: 265
Period size: 29 Copynumber: 6.5 Consensus size: 29
75517061 GACAAGATTG
* * * *
75517071 GCACTAAGTGTGCGAGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
* * *
75517101 GAACTAAGTGTGCGAGTTTG--ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATATATA
75517129 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
*
75517158 GCATTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
75517187 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
75517217 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
75517246 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75517260 GATTCACTAT
Statistics
Matches: 145, Mismatches: 10, Indels: 9
0.88 0.06 0.05
Matches are distributed among these distances:
27 2 0.01
28 19 0.13
29 78 0.54
30 44 0.30
31 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.28
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:75523744 original size:12 final size:12
Alignment explanation
Indices: 75523729--75523753 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
75523719 AGAAAATGTT
75523729 GAAAAAAAAAAA
1 GAAAAAAAAAAA
75523741 GAAAAAAAAAAA
1 GAAAAAAAAAAA
75523753 G
1 G
75523754 TGTGTGGATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (12 bp):
GAAAAAAAAAAA
Found at i:75525064 original size:30 final size:30
Alignment explanation
Indices: 75525028--75525187 Score: 197
Period size: 29 Copynumber: 5.5 Consensus size: 30
75525018 GACAAGATTG
* * * * *
75525028 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
75525058 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
*
75525086 GGTA-TAAGTGTGCGAGCTGAAAA-TATATA
1 -GCACTAAGTGTGCGAGCTGAAAATTATATA
75525115 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
75525145 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
75525174 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75525188 GATTCACTAT
Statistics
Matches: 116, Mismatches: 7, Indels: 15
0.84 0.05 0.11
Matches are distributed among these distances:
27 2 0.02
28 20 0.17
29 47 0.41
30 45 0.39
31 2 0.02
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:75525156 original size:59 final size:58
Alignment explanation
Indices: 75525027--75525187 Score: 202
Period size: 59 Copynumber: 2.8 Consensus size: 58
75525017 TGACAAGATT
* * * * * *
75525027 GGCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GGCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
*
75525086 GGTA-TAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GGCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
75525145 -GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GGCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
75525188 GATTCACTAT
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 18 0.20
59 50 0.56
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.28
Consensus pattern (58 bp):
GGCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:75526671 original size:26 final size:26
Alignment explanation
Indices: 75526635--75526716 Score: 112
Period size: 26 Copynumber: 3.2 Consensus size: 26
75526625 TGAAATGCCC
*
75526635 ATCATGGAACATTTACCTAAACAATT
1 ATCATGGAACATTTACCTAAACCATT
75526661 ATCATGGAACATTTACCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
* * *
75526687 ATAATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
75526713 ATCA
1 ATCA
75526717 ATTTTTATCA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
25 3 0.06
26 44 0.90
27 2 0.04
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:75526726 original size:10 final size:10
Alignment explanation
Indices: 75526711--75526736 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
75526701 ACCTAACCCA
75526711 TTATCAATTT
1 TTATCAATTT
75526721 TTATCAATTT
1 TTATCAATTT
75526731 TTATCA
1 TTATCA
75526737 TAAATTATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.12, G:0.00, T:0.58
Consensus pattern (10 bp):
TTATCAATTT
Found at i:75528087 original size:40 final size:40
Alignment explanation
Indices: 75528032--75528110 Score: 149
Period size: 40 Copynumber: 2.0 Consensus size: 40
75528022 GCAACATTAA
*
75528032 GATGTCTGGAAACAACTAATCACCCTTCATTAACTAAGTG
1 GATGTCTGGAAACAACTAATCACCCTTCATGAACTAAGTG
75528072 GATGTCTGGAAACAACTAATCACCCTTCATGAACTAAGT
1 GATGTCTGGAAACAACTAATCACCCTTCATGAACTAAGT
75528111 CGACGGCTCG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (40 bp):
GATGTCTGGAAACAACTAATCACCCTTCATGAACTAAGTG
Found at i:75534220 original size:18 final size:17
Alignment explanation
Indices: 75534189--75534231 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
75534179 GGCCCAGAAT
* *
75534189 CCCACATGCCCGTGTGGG
1 CCCACACGCCCGTGT-AG
*
75534207 CCCACACGCTCGTGTAG
1 CCCACACGCCCGTGTAG
75534224 CCCACACG
1 CCCACACG
75534232 GCCCAATTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.16, C:0.44, G:0.26, T:0.14
Consensus pattern (17 bp):
CCCACACGCCCGTGTAG
Found at i:75534861 original size:12 final size:12
Alignment explanation
Indices: 75534846--75534871 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
75534836 AGGGAAATGG
75534846 AAGGAAAATGTA
1 AAGGAAAATGTA
75534858 AAGGAAAATGTA
1 AAGGAAAATGTA
75534870 AA
1 AA
75534872 AATAAAAGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.23, T:0.15
Consensus pattern (12 bp):
AAGGAAAATGTA
Found at i:75536526 original size:17 final size:18
Alignment explanation
Indices: 75536506--75536540 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
75536496 TCTGCACACA
75536506 AATTAATTCAG-CACATT
1 AATTAATTCAGACACATT
*
75536523 AATTAATTTAGACACATT
1 AATTAATTCAGACACATT
75536541 GGATGCTAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (18 bp):
AATTAATTCAGACACATT
Found at i:75538248 original size:40 final size:40
Alignment explanation
Indices: 75538204--75538385 Score: 235
Period size: 39 Copynumber: 4.6 Consensus size: 40
75538194 GTTCAAAACA
* * ** * *
75538204 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
* *
75538244 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
*
75538284 CCTTCGGG-CTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
* * *
75538323 CCTTCGGG-CTTAGCCTGGATATCACAATTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
75538362 CCTTCGGG-CTTAGCCCGGATATCA
1 CCTTCGGGACTTAGCCCGGATATCA
75538386 CTCGAACATT
Statistics
Matches: 126, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 86 0.68
40 40 0.32
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:75538315 original size:39 final size:39
Alignment explanation
Indices: 75538234--75538386 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
75538224 TATGGTAACC
* *
75538234 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
75538274 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
75538313 CGCACAATTGCCTTCGGGCTTAGCCTGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
75538352 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
75538387 TCGAACATTC
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 87 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:75539836 original size:93 final size:93
Alignment explanation
Indices: 75539724--75539895 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75539714 CGCCCATAAG
* *
75539724 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75539789 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
75539817 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75539882 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
75539896 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:75539892 original size:46 final size:46
Alignment explanation
Indices: 75539717--75539892 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
75539707 TGTAACCCGC
* * *
75539717 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
75539763 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
75539813 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75539856 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
75539893 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75547419 original size:93 final size:93
Alignment explanation
Indices: 75547307--75547478 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75547297 CGCCCATAAG
* *
75547307 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75547372 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
75547400 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75547465 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
75547479 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:75547475 original size:46 final size:46
Alignment explanation
Indices: 75547300--75547475 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
75547290 TGTAACCCGC
* * *
75547300 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
75547346 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
75547396 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75547439 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
75547476 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75551498 original size:27 final size:28
Alignment explanation
Indices: 75551441--75551510 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
75551431 AAATTTGTAC
**
75551441 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
75551469 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
75551496 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75551511 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:75551519 original size:27 final size:27
Alignment explanation
Indices: 75551441--75551522 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
75551431 AAATTTGTAC
* *
75551441 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
75551469 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
75551496 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
75551523 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:75559338 original size:27 final size:28
Alignment explanation
Indices: 75559294--75559362 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
75559284 ATAGTGAGTC
75559294 CGCACAC-TAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
75559320 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
75559348 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75559363 GTACAAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 7 0.17
27 14 0.35
28 19 0.47
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:75567181 original size:27 final size:27
Alignment explanation
Indices: 75567163--75567259 Score: 176
Period size: 27 Copynumber: 3.6 Consensus size: 27
75567153 ATAGTGAGTC
75567163 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
75567190 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
75567217 CACACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
75567245 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75567260 GTACAAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 49 0.73
28 18 0.27
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:75570373 original size:39 final size:39
Alignment explanation
Indices: 75570319--75570462 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
75570309 GAATGTTCGA
75570319 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
75570358 GTGATATCCGGGCTAAGCCCAAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
75570397 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
75570436 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
75570463 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:75570406 original size:78 final size:79
Alignment explanation
Indices: 75570320--75570502 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
75570310 AATGTTCGAG
75570320 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCAAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCAAAGGC
75570384 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
75570398 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCAAAGGC
** *
75570463 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
75570477 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
75570503 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 54 0.57
79 31 0.33
80 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCAAAGGC
AATTGTGCGAGTTA
Found at i:75577335 original size:40 final size:40
Alignment explanation
Indices: 75577276--75577417 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
75577266 AAATTGAATG
* * *
75577276 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
75577316 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
75577356 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
75577396 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
75577418 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:75577441 original size:40 final size:40
Alignment explanation
Indices: 75577314--75577443 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
75577304 ATGCTGGAAA
* * *
75577314 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
75577354 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
75577394 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
75577434 TTATATCCGG
1 TTATATCCGG
75577444 TTATATTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:75580947 original size:28 final size:27
Alignment explanation
Indices: 75580906--75580960 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
75580896 TCAAGTCTGT
75580906 TTGGTGAACTGGGTGATCGCCAGTCAAA
1 TTGGTGAACTGGGT-ATCGCCAGTCAAA
* *
75580934 TTGG-GAACTGGGGTTTTGCCAGTCAAA
1 TTGGTGAACT-GGGTATCGCCAGTCAAA
75580961 GTCAAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.27
Consensus pattern (27 bp):
TTGGTGAACTGGGTATCGCCAGTCAAA
Found at i:75588793 original size:11 final size:11
Alignment explanation
Indices: 75588757--75588812 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
75588747 CTTGACATGT
75588757 ATGATATGCAC
1 ATGATATGCAC
* *
75588768 ATGACATG--T
1 ATGATATGCAC
75588777 ATGATATGCAC
1 ATGATATGCAC
*
75588788 ATGATATG--T
1 ATGATATGCAC
75588797 ATGATATGCAC
1 ATGATATGCAC
75588808 ATGAT
1 ATGAT
75588813 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:75588812 original size:20 final size:20
Alignment explanation
Indices: 75588713--75588811 Score: 171
Period size: 20 Copynumber: 5.0 Consensus size: 20
75588703 TAAGCATGGT
*
75588713 ATGTATGATATGCACTTGAC
1 ATGTATGATATGCACATGAC
*
75588733 ATGTATGATATGCACTTGAC
1 ATGTATGATATGCACATGAC
75588753 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
75588773 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
75588793 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
75588812 TGTAATCATA
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 77 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:75588892 original size:23 final size:23
Alignment explanation
Indices: 75588864--75588908 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
75588854 GGAAGTGAAA
75588864 AAGGGCTTATGCCCCAGCTATTG
1 AAGGGCTTATGCCCCAGCTATTG
* * *
75588887 AAGGGCTTTTTCCCCAGTTATT
1 AAGGGCTTATGCCCCAGCTATT
75588909 AAAAGAGGCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.33
Consensus pattern (23 bp):
AAGGGCTTATGCCCCAGCTATTG
Found at i:75591007 original size:40 final size:39
Alignment explanation
Indices: 75590815--75591000 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 39
75590805 TCGAATGATG
* * **
75590815 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTTTA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
75590855 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
75590895 TCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTAGTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
75590935 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
75590976 -CCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCC-GAAGGCATTTG
75591001 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
39 3 0.02
40 115 0.90
41 10 0.08
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75591007 original size:80 final size:79
Alignment explanation
Indices: 75590868--75591033 Score: 203
Period size: 80 Copynumber: 2.1 Consensus size: 79
75590858 GGACTAAGAT
**
75590868 CCGAAGGCATTTGTGCGAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTAG-T
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
*
75590932 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
* * *
75590948 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCTGAAGGCATTTGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCAGACTAAGATCC-GAAGGCATTTGAACGAGTAGC
* *
75591011 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
75591027 CCGAAGG
1 CCGAAGG
75591034 TAAGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
79 20 0.27
80 53 0.71
81 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:75594623 original size:40 final size:39
Alignment explanation
Indices: 75594496--75594625 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
75594486 ATGCTGGAAA
* *
75594496 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
75594536 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
75594576 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
75594616 TTATATCCGG
1 TTATATCCGG
75594626 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:75602686 original size:40 final size:39
Alignment explanation
Indices: 75602559--75602688 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
75602549 ATGCTGGAAA
* *
75602559 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
75602599 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
75602639 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
75602679 TTATATCCGG
1 TTATATCCGG
75602689 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:75610293 original size:40 final size:40
Alignment explanation
Indices: 75610103--75610286 Score: 241
Period size: 40 Copynumber: 4.6 Consensus size: 40
75610093 GAATGATGTT
* * *
75610103 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATC
*
75610143 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
75610183 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
75610223 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
*
75610263 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
75610287 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:75610293 original size:80 final size:79
Alignment explanation
Indices: 75610154--75610319 Score: 212
Period size: 80 Copynumber: 2.1 Consensus size: 79
75610144 GGACTAAGAT
**
75610154 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
*
75610218 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
* *
75610234 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
* *
75610297 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
75610313 CCGAAGG
1 CCGAAGG
75610320 TACGTGATTC
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
79 17 0.22
80 57 0.75
81 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:75611704 original size:31 final size:31
Alignment explanation
Indices: 75611666--75611730 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
75611656 GGGGTGTTAC
*
75611666 AAAAGGCTTCGGCCCAGTAATATGAAATATG
1 AAAAGGCTTCGACCCAGTAATATGAAATATG
* **
75611697 AAAAGGCTTCGACCCATTGTTATGAAATATG
1 AAAAGGCTTCGACCCAGTAATATGAAATATG
75611728 AAA
1 AAA
75611731 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (31 bp):
AAAAGGCTTCGACCCAGTAATATGAAATATG
Found at i:75615315 original size:40 final size:39
Alignment explanation
Indices: 75615260--75615429 Score: 180
Period size: 40 Copynumber: 4.3 Consensus size: 39
75615250 TGTTGCTGTA
75615260 TGTTTGCACTCTGATGCCGCTAATTGCACTTTTGTGCCCC
1 TGTTTGCACTCTGATGCC-CTAATTGCACTTTTGTGCCCC
** * *
75615300 TGTTTGCACTCTGATGCCCCTGTTTGCAC-TCTGATGCCCT
1 TGTTTGCACTCTGATG-CCCTAATTGCACTTTTG-TGCCCC
* * * * *
75615340 TGTTTGCACTCAGGTGCCACTGATTGCACTTTGGTGCCCG
1 TGTTTGCACTCTGATGCC-CTAATTGCACTTTTGTGCCCC
* * *
75615380 TGTTTGCACTCGGGTGTCCCTAATTACACTTTTGTGCCCC
1 TGTTTGCACTCTGATG-CCCTAATTGCACTTTTGTGCCCC
75615420 TGTTTGCACT
1 TGTTTGCACT
75615430 TGGGTGCTTC
Statistics
Matches: 110, Mismatches: 15, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
39 5 0.05
40 99 0.90
41 6 0.05
ACGTcount: A:0.12, C:0.29, G:0.22, T:0.37
Consensus pattern (39 bp):
TGTTTGCACTCTGATGCCCTAATTGCACTTTTGTGCCCC
Found at i:75615395 original size:20 final size:20
Alignment explanation
Indices: 75615260--75615467 Score: 157
Period size: 20 Copynumber: 10.4 Consensus size: 20
75615250 TGTTGCTGTA
* *
75615260 TGTTTGCACTCTGATGCCGC
1 TGTTTGCACTCTGGTGCCCC
** * *
75615280 TAATTGCACTTTTGTGCCCC
1 TGTTTGCACTCTGGTGCCCC
*
75615300 TGTTTGCACTCTGATGCCCC
1 TGTTTGCACTCTGGTGCCCC
* *
75615320 TGTTTGCACTCTGATGCCCT
1 TGTTTGCACTCTGGTGCCCC
* *
75615340 TGTTTGCACTCAGGTGCCAC
1 TGTTTGCACTCTGGTGCCCC
* * *
75615360 TGATTGCACTTTGGTGCCCG
1 TGTTTGCACTCTGGTGCCCC
* *
75615380 TGTTTGCACTCGGGTGTCCC
1 TGTTTGCACTCTGGTGCCCC
** * * *
75615400 TAATTACACTTTTGTGCCCC
1 TGTTTGCACTCTGGTGCCCC
**
75615420 TGTTTGCACT-TGGGTGCTTC
1 TGTTTGCACTCT-GGTGCCCC
* * **
75615440 TGTATGCACTTTGGTGCCTT
1 TGTTTGCACTCTGGTGCCCC
75615460 TGTTTGCA
1 TGTTTGCA
75615468 TTTTTGTTTT
Statistics
Matches: 143, Mismatches: 43, Indels: 4
0.75 0.23 0.02
Matches are distributed among these distances:
19 1 0.01
20 141 0.99
21 1 0.01
ACGTcount: A:0.11, C:0.27, G:0.23, T:0.38
Consensus pattern (20 bp):
TGTTTGCACTCTGGTGCCCC
Found at i:75615417 original size:60 final size:59
Alignment explanation
Indices: 75615260--75615436 Score: 201
Period size: 60 Copynumber: 2.9 Consensus size: 59
75615250 TGTTGCTGTA
* *
75615260 TGTTTGCACTCTGATGCCGCTAATTGCACTTTTGTGCCCCTGTTTGCACTCTGATGCCCC
1 TGTTTGCACTCTGATGCC-CTAATTGCACTTTTGTGCCCCTGTTTGCACTTTGGTGCCCC
** *** * * *
75615320 TGTTTGCACTCTGATGCCCTTGTTTGCACTCAGGTGCCACTGATTGCACTTTGGTGCCCG
1 TGTTTGCACTCTGATGCCC-TAATTGCACTTTTGTGCCCCTGTTTGCACTTTGGTGCCCC
* * * *
75615380 TGTTTGCACTCGGGTGTCCCTAATTACACTTTTGTGCCCCTGTTTGCACTTGGGTGC
1 TGTTTGCACTCTGATG-CCCTAATTGCACTTTTGTGCCCCTGTTTGCACTTTGGTGC
75615437 TTCTGTATGC
Statistics
Matches: 94, Mismatches: 21, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
59 1 0.01
60 90 0.96
61 3 0.03
ACGTcount: A:0.11, C:0.29, G:0.23, T:0.37
Consensus pattern (59 bp):
TGTTTGCACTCTGATGCCCTAATTGCACTTTTGTGCCCCTGTTTGCACTTTGGTGCCCC
Found at i:75615418 original size:80 final size:80
Alignment explanation
Indices: 75615260--75615467 Score: 204
Period size: 80 Copynumber: 2.6 Consensus size: 80
75615250 TGTTGCTGTA
* * * * * * **
75615260 TGTTTGCACTCTGATGCCGCTAATTGCACTTTTGTGCCCCTGTTTGCACTCTGATGCCCCTGTTT
1 TGTTTGCACTCAGGTGCCACTGATTGCACTTTGGTGCCCCTGTTTGCACTCGGATGCCCCTAATT
* *
75615325 GCACTCTGATGCCCT
66 ACACTCTGATGCCCC
* * *
75615340 TGTTTGCACTCAGGTGCCACTGATTGCACTTTGGTGCCCGTGTTTGCACTCGGGTGTCCCTAATT
1 TGTTTGCACTCAGGTGCCACTGATTGCACTTTGGTGCCCCTGTTTGCACTCGGATGCCCCTAATT
*
75615405 ACACTTTTG-TGCCCC
66 ACAC-TCTGATGCCCC
** ** **
75615420 TGTTTGCACTTGGGTGCTTCTG-TATGCACTTTGGTGCCTTTGTTTGCA
1 TGTTTGCACTCAGGTGCCACTGAT-TGCACTTTGGTGCCCCTGTTTGCA
75615468 TTTTTGTTTT
Statistics
Matches: 106, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.01
80 102 0.96
81 3 0.03
ACGTcount: A:0.11, C:0.27, G:0.23, T:0.38
Consensus pattern (80 bp):
TGTTTGCACTCAGGTGCCACTGATTGCACTTTGGTGCCCCTGTTTGCACTCGGATGCCCCTAATT
ACACTCTGATGCCCC
Found at i:75615450 original size:40 final size:41
Alignment explanation
Indices: 75615260--75615467 Score: 176
Period size: 40 Copynumber: 5.2 Consensus size: 41
75615250 TGTTGCTGTA
* * * *
75615260 TGTTTGCACTCTGATGCCGCT-AATTGCACTTTTGTGCCCC
1 TGTTTGCACTCGGGTGCCCCTGTATTGCACTTTTGTGCCCC
* * * *
75615300 TGTTTGCACTCTGATGCCCCTGT-TTGCAC-TCTGATGCCCT
1 TGTTTGCACTCGGGTGCCCCTGTATTGCACTTTTG-TGCCCC
* * * *
75615340 TGTTTGCACTCAGGTGCCACTG-ATTGCACTTTGGTGCCCG
1 TGTTTGCACTCGGGTGCCCCTGTATTGCACTTTTGTGCCCC
* * *
75615380 TGTTTGCACTCGGGTGTCCCT-AATTACACTTTTGTGCCCC
1 TGTTTGCACTCGGGTGCCCCTGTATTGCACTTTTGTGCCCC
* ** * **
75615420 TGTTTGCACTTGGGTGCTTCTGTA-TGCACTTTGGTGCCTT
1 TGTTTGCACTCGGGTGCCCCTGTATTGCACTTTTGTGCCCC
75615460 TGTTTGCA
1 TGTTTGCA
75615468 TTTTTGTTTT
Statistics
Matches: 137, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
39 3 0.02
40 131 0.96
41 3 0.02
ACGTcount: A:0.11, C:0.27, G:0.23, T:0.38
Consensus pattern (41 bp):
TGTTTGCACTCGGGTGCCCCTGTATTGCACTTTTGTGCCCC
Found at i:75621162 original size:6 final size:6
Alignment explanation
Indices: 75621151--75621190 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
75621141 ATGATAAGCC
75621151 TCAAAA TCAAAA TCAAAA TCAAAA TCAAAA TCAAAA TCAA
1 TCAAAA TCAAAA TCAAAA TCAAAA TCAAAA TCAAAA TCAA
75621191 TGTTTGAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.65, C:0.17, G:0.00, T:0.17
Consensus pattern (6 bp):
TCAAAA
Found at i:75622985 original size:15 final size:15
Alignment explanation
Indices: 75622965--75622995 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
75622955 GATGCCATCT
75622965 TAATGGTAATTTGAA
1 TAATGGTAATTTGAA
75622980 TAATGGTAATTTGAA
1 TAATGGTAATTTGAA
75622995 T
1 T
75622996 GTTGGAACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.42
Consensus pattern (15 bp):
TAATGGTAATTTGAA
Found at i:75627105 original size:21 final size:20
Alignment explanation
Indices: 75627081--75627122 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
75627071 CAAAATGAAA
75627081 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
75627102 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
75627122 T
1 T
75627123 AATCATTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.33
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:75631744 original size:30 final size:30
Alignment explanation
Indices: 75631686--75631744 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
75631676 GCCTTTTATA
*
75631686 AATATTTACAAAAAGAGACAACTAATTTTT
1 AATATTTACAAAAAGAGACAACCAATTTTT
*
75631716 AATATTTACAAAAAGA-ATAACCACATTTT
1 AATATTTACAAAAAGAGACAACCA-ATTTT
75631745 GAAAATTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 5 0.19
30 21 0.81
ACGTcount: A:0.51, C:0.12, G:0.05, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACAACCAATTTTT
Found at i:75632522 original size:20 final size:20
Alignment explanation
Indices: 75632492--75632541 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
75632482 TTGGAGGGTT
* *
75632492 ACACGCTCGTATGGCTTGGG
1 ACACGCCCGTATAGCTTGGG
*
75632512 ACACGTCCGTATAGCTTGGG
1 ACACGCCCGTATAGCTTGGG
75632532 ACACGCCCGT
1 ACACGCCCGT
75632542 GTCCTTAACC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (20 bp):
ACACGCCCGTATAGCTTGGG
Found at i:75633906 original size:48 final size:48
Alignment explanation
Indices: 75633849--75634031 Score: 153
Period size: 48 Copynumber: 3.9 Consensus size: 48
75633839 CACATGGTAG
* * * *
75633849 GATGCCAATGCCATATCTCGGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACAGATC
* * **
75633897 GATGCCAATGTCATGTCCCAGACATGGTCTTACATGGGATCGTAGATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACAGATC
* * **** * *
75633945 GATGCCAA---C--AGCCCAG-CTATGGTCTTATACAAAATTACATATC
1 GATGCCAATGCCATATCCCAGAC-ATGGTCTTACATGGGATCACAGATC
* *
75633988 GATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCACA
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACA
75634032 CATAACCCTA
Statistics
Matches: 101, Mismatches: 27, Indels: 14
0.71 0.19 0.10
Matches are distributed among these distances:
42 1 0.01
43 29 0.29
45 1 0.01
46 1 0.01
48 68 0.67
49 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACAGATC
Found at i:75642291 original size:22 final size:22
Alignment explanation
Indices: 75642265--75642308 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
75642255 GAAAATAATC
*
75642265 AAAATGAATCAAAATTTATTAT
1 AAAATGAATCAAAATTCATTAT
* *
75642287 AAAATTAATTAAAATTCATTAT
1 AAAATGAATCAAAATTCATTAT
75642309 GTTAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (22 bp):
AAAATGAATCAAAATTCATTAT
Found at i:75655241 original size:14 final size:15
Alignment explanation
Indices: 75655214--75655247 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
75655204 CAAAATAAAT
*
75655214 ATTTTTATTAAATTA
1 ATTTTAATTAAATTA
75655229 ATTTTAATT-AATTA
1 ATTTTAATTAAATTA
75655243 ATTTT
1 ATTTT
75655248 CCAATTAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
ATTTTAATTAAATTA
Found at i:75662594 original size:28 final size:28
Alignment explanation
Indices: 75662533--75662630 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
75662523 TCACAAATTG
** * *
75662533 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
75662562 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
75662590 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
75662618 GCACTAAGTGTGC
1 GCACTAAGTGTGC
75662631 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:75665769 original size:40 final size:40
Alignment explanation
Indices: 75665710--75665878 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
75665700 CGGGACTTTA
* * *
75665710 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
75665750 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
75665790 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
75665830 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
75665870 CCCGGATAT
1 CCCGGATAT
75665879 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:75673564 original size:28 final size:28
Alignment explanation
Indices: 75673503--75673600 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
75673493 TCACAAATTG
** * *
75673503 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
75673532 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
75673560 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
75673588 GCACTAAGTGTGC
1 GCACTAAGTGTGC
75673601 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:75677378 original size:27 final size:25
Alignment explanation
Indices: 75677340--75677394 Score: 92
Period size: 27 Copynumber: 2.1 Consensus size: 25
75677330 GTCGATATGA
75677340 GGCAACGGGAAATTATCATTCGGTGCT
1 GGCAACGGGAAATTATC-TTCGG-GCT
75677367 GGCAACGGGAAATTATCTTCGGGCT
1 GGCAACGGGAAATTATCTTCGGGCT
75677392 GGC
1 GGC
75677395 CTTGTTTAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 6 0.21
26 5 0.18
27 17 0.61
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.24
Consensus pattern (25 bp):
GGCAACGGGAAATTATCTTCGGGCT
Found at i:75686965 original size:34 final size:34
Alignment explanation
Indices: 75686923--75686987 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
75686913 CAGGTAAACA
75686923 GTGGTGGAGCAGAGGGGAGCACATGCTGGCGTCG
1 GTGGTGGAGCAGAGGGGAGCACATGCTGGCGTCG
75686957 GTGGTGGAGCAGAGGGGAGCACATGCTGGCG
1 GTGGTGGAGCAGAGGGGAGCACATGCTGGCG
75686988 GCTAGGGTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.18, C:0.17, G:0.51, T:0.14
Consensus pattern (34 bp):
GTGGTGGAGCAGAGGGGAGCACATGCTGGCGTCG
Found at i:75691779 original size:40 final size:42
Alignment explanation
Indices: 75691735--75691815 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
75691725 AAGGTTTTTA
75691735 GACACGGGCTAGA-ACAC-AG-GAGTGTCATGGCCGTGTGAAG
1 GACACGGGCTAGAGACACAAGAGAGTGTCA-GGCCGTGTGAAG
* *
75691775 GACACGGGCTATAGACACAAGAGTGTGTCAGGCCGTGTGAA
1 GACACGGGCTAGAGACACAAGAGAGTGTCAGGCCGTGTGAA
75691816 AACCCCTGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
40 12 0.33
41 4 0.11
42 13 0.36
43 7 0.19
ACGTcount: A:0.28, C:0.20, G:0.36, T:0.16
Consensus pattern (42 bp):
GACACGGGCTAGAGACACAAGAGAGTGTCAGGCCGTGTGAAG
Found at i:75695248 original size:18 final size:18
Alignment explanation
Indices: 75695225--75695264 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
75695215 TCATAATATG
*
75695225 CTTAAATAATGTTTAGTT
1 CTTAAATAATATTTAGTT
75695243 CTTAAATAATATTTAGTT
1 CTTAAATAATATTTAGTT
75695261 CTTA
1 CTTA
75695265 CTTTCCCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.50
Consensus pattern (18 bp):
CTTAAATAATATTTAGTT
Found at i:75695729 original size:55 final size:53
Alignment explanation
Indices: 75695599--75695785 Score: 187
Period size: 55 Copynumber: 3.5 Consensus size: 53
75695589 CTTATCATTG
* * * *
75695599 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAATTCACCAATC
1 CCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAATC
* * *
75695652 CCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATT
1 CCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAATC
* * * * * * *
75695707 CCATGTCTTGACATGGTTTTACATGATTTCCTTACCTTATAGAACTTATCAATG
1 CCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAATC
* *
75695761 CCATGCCTTGGCATGGTTTTACATG
1 CCATGCCTTGACATGGTCTTACATG
75695786 ATATCCTTAT
Statistics
Matches: 112, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 2 0.02
53 33 0.29
54 34 0.30
55 41 0.37
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (53 bp):
CCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAATC
Found at i:75695778 original size:54 final size:54
Alignment explanation
Indices: 75695586--75695799 Score: 209
Period size: 54 Copynumber: 4.0 Consensus size: 54
75695576 TTTCCTTTTT
* * * * *
75695586 GAACTTATCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATA
* * * ** *
75695639 GAA-TTCACCAATCCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTT-ATCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTACCTTATA
* * * * *
75695693 GTAACTCATCAATTCCATGTCTTGACATGGTTTTACATGATTTCCTTACCTTATA
1 G-AACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATA
* * *
75695748 GAACTTATCAATGCCATGCCTTGGCATGGTTTTACATGATATCCTTATCTTA
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTA
75695800 CCAAATGTCA
Statistics
Matches: 132, Mismatches: 23, Indels: 11
0.80 0.14 0.07
Matches are distributed among these distances:
52 4 0.03
53 40 0.30
54 46 0.35
55 39 0.30
56 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATA
Found at i:75695838 original size:47 final size:47
Alignment explanation
Indices: 75695772--75695987 Score: 342
Period size: 47 Copynumber: 4.6 Consensus size: 47
75695762 CATGCCTTGG
* * * *
75695772 CATGGTTTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
75695819 CATGGTCTTATATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
* * * *
75695866 CACGCTCGTACATGGTATCCTTGTCTTACCAAATACCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
75695913 CATGGTCTTCCATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
75695960 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
75695988 GTGCCAATGC
Statistics
Matches: 153, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 153 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:75696792 original size:30 final size:31
Alignment explanation
Indices: 75696749--75696806 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 31
75696739 CTAACTCAAA
*
75696749 CTTTGGCAAAATTACAATTTTGCCCCTAAAC
1 CTTTGGCAAAATTACAATTTTACCCCTAAAC
* **
75696780 CTTT-GCAGAATTATGATTTTACCCCTA
1 CTTTGGCAAAATTACAATTTTACCCCTA
75696807 GGCTCGGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 19 0.83
31 4 0.17
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.36
Consensus pattern (31 bp):
CTTTGGCAAAATTACAATTTTACCCCTAAAC
Found at i:75703528 original size:3 final size:3
Alignment explanation
Indices: 75703510--75703560 Score: 56
Period size: 3 Copynumber: 18.0 Consensus size: 3
75703500 ATTTGCTTTA
*
75703510 ATT ATT A-T ATT A-T ATT ATT ATT A-T ATT -TT AGTA ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
75703552 ATT ATT ATT
1 ATT ATT ATT
75703561 TACTTATAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
2 8 0.20
3 31 0.76
4 2 0.05
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:75713359 original size:55 final size:53
Alignment explanation
Indices: 75713272--75713525 Score: 245
Period size: 55 Copynumber: 4.8 Consensus size: 53
75713262 ATTAGGGTTT
*
75713272 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAA-TGGTAA-GTTTCTAAGGC
* * * *
75713327 AAGGATACCATGTAAGACCATGTCAAGACATGGCACTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT--TCTAAGGC
* * *
75713382 AAAGG-T-CCTATGTAAGACCATGCCAAG-CATGACATTGGTGAG-TTCATAAGGC
1 -AAGGATACC-ATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTC-TAAGGC
* * *
75713434 AATGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTCTAAGGC
* ** * *
75713483 AAGGATAACACATAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG
75713526 GTACACGTGT
Statistics
Matches: 166, Mismatches: 24, Indels: 24
0.78 0.11 0.11
Matches are distributed among these distances:
49 36 0.22
51 4 0.02
52 25 0.15
53 18 0.11
54 21 0.13
55 58 0.35
56 4 0.02
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTCTAAGGC
Found at i:75713477 original size:107 final size:110
Alignment explanation
Indices: 75713281--75713478 Score: 305
Period size: 107 Copynumber: 1.8 Consensus size: 110
75713271 TAAGGATACC
*
75713281 ATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
1 ATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
*
75713346 ATGTCAAGACATGGCACTGATAAGTTACTATAAGGCAAAGGTCCT
66 ATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCT
* *
75713391 ATGTAAGACCATGCCAA-GCATGAC-ATTGGTGA-G-TTCATAAGGCAATGATACCATGTAAGAC
1 ATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAGAC
* *
75713452 CATGTCGAGACATGGCAATGGTAAGTT
65 CATGTCAAGACATGGCAATGATAAGTT
75713479 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
106 3 0.04
107 48 0.59
108 7 0.09
109 6 0.07
110 17 0.21
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
ATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCT
Found at i:75714870 original size:24 final size:24
Alignment explanation
Indices: 75714838--75714885 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
75714828 TTTAGAAGGA
75714838 CTAAATTGTGAATTAAACATGTTG
1 CTAAATTGTGAATTAAACATGTTG
*
75714862 CTAAATTGTGAATTGAACATGTTG
1 CTAAATTGTGAATTAAACATGTTG
75714886 TATAGGCTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (24 bp):
CTAAATTGTGAATTAAACATGTTG
Found at i:75726246 original size:38 final size:38
Alignment explanation
Indices: 75726182--75726299 Score: 119
Period size: 38 Copynumber: 3.1 Consensus size: 38
75726172 AAGGGCCGAC
* * * * *
75726182 TATAATACCAGCACTAGGCCTCCGGGATTTATCCCTGA
1 TATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGA
* *
75726220 TATAATACCAACACGAAGCCTGCGGGATTTAACTCGGA
1 TATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGA
** **
75726258 TATTTTACCAGCACGAAGCCTGCTGGTCTTTAAGCCCGGA
1 TATAATACCAGCACGAAGCCTGC-GGGATTTAA-CCCGGA
75726298 TA
1 TA
75726300 CACATCAAAA
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
38 51 0.78
39 7 0.11
40 7 0.11
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (38 bp):
TATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGA
Found at i:75733821 original size:90 final size:90
Alignment explanation
Indices: 75733668--75733845 Score: 356
Period size: 90 Copynumber: 2.0 Consensus size: 90
75733658 TCATGCATGA
75733668 CATGCTTGTATTTTGATGTTTAATGGAGGAATATGAATGTTTGATGCATGATGAACATCTTTTAT
1 CATGCTTGTATTTTGATGTTTAATGGAGGAATATGAATGTTTGATGCATGATGAACATCTTTTAT
75733733 TAGGTGATTTTTAGTGAAAACACGT
66 TAGGTGATTTTTAGTGAAAACACGT
75733758 CATGCTTGTATTTTGATGTTTAATGGAGGAATATGAATGTTTGATGCATGATGAACATCTTTTAT
1 CATGCTTGTATTTTGATGTTTAATGGAGGAATATGAATGTTTGATGCATGATGAACATCTTTTAT
75733823 TAGGTGATTTTTAGTGAAAACAC
66 TAGGTGATTTTTAGTGAAAACAC
75733846 CTAAATGAAG
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 88 1.00
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (90 bp):
CATGCTTGTATTTTGATGTTTAATGGAGGAATATGAATGTTTGATGCATGATGAACATCTTTTAT
TAGGTGATTTTTAGTGAAAACACGT
Found at i:75739164 original size:13 final size:13
Alignment explanation
Indices: 75739146--75739173 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
75739136 CATTTTGTGC
75739146 CACACGGTTTGGT
1 CACACGGTTTGGT
75739159 CACACGGTTTGGT
1 CACACGGTTTGGT
75739172 CA
1 CA
75739174 TACAGGGGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.25, G:0.29, T:0.29
Consensus pattern (13 bp):
CACACGGTTTGGT
Found at i:75748185 original size:32 final size:32
Alignment explanation
Indices: 75748149--75748213 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
75748139 ATGTATAGGC
75748149 TGGGTTTTACTTTTGAAATGTTTAATTTTGGT
1 TGGGTTTTACTTTTGAAATGTTTAATTTTGGT
75748181 TGGGTTTTACTTTTGAAATGTTTAATTTTGGT
1 TGGGTTTTACTTTTGAAATGTTTAATTTTGGT
75748213 T
1 T
75748214 ATGTATTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.18, C:0.03, G:0.22, T:0.57
Consensus pattern (32 bp):
TGGGTTTTACTTTTGAAATGTTTAATTTTGGT
Found at i:75749162 original size:2 final size:2
Alignment explanation
Indices: 75749155--75749189 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
75749145 CATATACGTG
75749155 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
75749190 ACAAGTCTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:75751106 original size:20 final size:20
Alignment explanation
Indices: 75751081--75751119 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
75751071 CCTATTCCAT
*
75751081 AAATTTTAGAATTTTTCATC
1 AAATTTTAGAACTTTTCATC
*
75751101 AAATTTTATAACTTTTCAT
1 AAATTTTAGAACTTTTCAT
75751120 TTTAGTCCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.10, G:0.03, T:0.51
Consensus pattern (20 bp):
AAATTTTAGAACTTTTCATC
Found at i:75755415 original size:18 final size:18
Alignment explanation
Indices: 75755380--75755417 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
75755370 GCAATAAGTG
**
75755380 ACATTTTGAAAGTTAATA
1 ACATTTTGAAAGAGAATA
75755398 ACATTTTGAAAGAGAATA
1 ACATTTTGAAAGAGAATA
75755416 AC
1 AC
75755418 TTTATGATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.47, C:0.08, G:0.13, T:0.32
Consensus pattern (18 bp):
ACATTTTGAAAGAGAATA
Found at i:75759063 original size:28 final size:28
Alignment explanation
Indices: 75758998--75759098 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
75758988 ATAGTGAATC
*
75758998 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
75759027 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
75759055 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
75759085 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75759099 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:75767006 original size:28 final size:28
Alignment explanation
Indices: 75766941--75767041 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
75766931 ATAGTGAATC
*
75766941 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
75766970 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
75766998 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
75767028 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75767042 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:75772056 original size:21 final size:21
Alignment explanation
Indices: 75772027--75772066 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
75772017 GTTTTTATAT
*
75772027 TTTGGTTCAACTTAAGTATCA
1 TTTGATTCAACTTAAGTATCA
75772048 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
75772067 GAATTAGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATCA
Found at i:75774043 original size:373 final size:372
Alignment explanation
Indices: 75773095--75774380 Score: 2554
Period size: 372 Copynumber: 3.5 Consensus size: 372
75773085 CTTGTCCATT
*
75773095 AAAATTACAACAATAGCTGACTTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
75773160 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
75773225 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
75773290 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
75773355 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
75773420 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
326 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
75773467 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
75773532 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
75773597 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
75773662 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
75773727 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTA
75773792 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
325 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
75773840 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
75773905 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
75773970 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
75774035 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
75774100 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
75774165 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
326 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
75774212 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
75774277 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
75774342 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
75774381 TGTTTCAATT
Statistics
Matches: 912, Mismatches: 1, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
372 540 0.59
373 372 0.41
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (372 bp):
AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAA
TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
Found at i:75774495 original size:24 final size:24
Alignment explanation
Indices: 75774468--75774535 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
75774458 ATTATTATTG
*
75774468 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
75774492 AAATATTATTC-TCCGTTTTATTAC
1 AAATATTA-TCGTCCGTTTTATCAC
75774516 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
75774536 CCATTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.05
24 36 0.90
25 2 0.05
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.46
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:75774756 original size:15 final size:15
Alignment explanation
Indices: 75774712--75774767 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
75774702 AACGACATGT
75774712 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
75774728 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
75774741 ATATTATTTAATTAA
1 ATATTATTTAATTAA
75774756 ATATTATTTAAT
1 ATATTATTTAAT
75774768 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:75774884 original size:9 final size:9
Alignment explanation
Indices: 75774872--75774981 Score: 118
Period size: 9 Copynumber: 12.6 Consensus size: 9
75774862 TATTTGATAT
*
75774872 CATAATTTA
1 CATAACTTA
75774881 CATAACTTA
1 CATAACTTA
* *
75774890 TATAACATA
1 CATAACTTA
*
75774899 TATAACTTA
1 CATAACTTA
75774908 CATAACTTA
1 CATAACTTA
*
75774917 TATAAC-TA
1 CATAACTTA
75774925 CATAACTTA
1 CATAACTTA
*
75774934 TATAACTTA
1 CATAACTTA
75774943 -ATAACTTA
1 CATAACTTA
* *
75774951 GATAA-ATA
1 CATAACTTA
*
75774959 TATAACTTA
1 CATAACTTA
75774968 CATAACTTA
1 CATAACTTA
75774977 CATAA
1 CATAA
75774982 TACTTAAAAT
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
8 21 0.24
9 65 0.76
ACGTcount: A:0.48, C:0.15, G:0.01, T:0.36
Consensus pattern (9 bp):
CATAACTTA
Found at i:75774928 original size:17 final size:18
Alignment explanation
Indices: 75774872--75774981 Score: 127
Period size: 17 Copynumber: 6.3 Consensus size: 18
75774862 TATTTGATAT
* *
75774872 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
75774890 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
75774908 CATAACTTATATAAC-TA
1 CATAACTTATATAACTTA
75774925 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* *
75774943 -ATAACTTAGATAA-ATA
1 CATAACTTATATAACTTA
* *
75774959 TATAACTTACATAACTTA
1 CATAACTTATATAACTTA
75774977 CATAA
1 CATAA
75774982 TACTTAAAAT
Statistics
Matches: 78, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
16 2 0.03
17 41 0.53
18 35 0.45
ACGTcount: A:0.48, C:0.15, G:0.01, T:0.36
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:75774992 original size:34 final size:34
Alignment explanation
Indices: 75774888--75774995 Score: 100
Period size: 34 Copynumber: 3.1 Consensus size: 34
75774878 TTACATAACT
*
75774888 TATATAACATATATAACTTACAT-A-ACTTATATAA
1 TATATAACTTATATAACTTACATAATACTTA-A-AA
*
75774922 CTACATAACTTATATAACTTA-AT-A-ACTTAGATAAA
1 -TATATAACTTATATAACTTACATAATACTT--A-AAA
*
75774957 TATATAACTTACATAACTTACATAATACTTAAAA
1 TATATAACTTATATAACTTACATAATACTTAAAA
75774991 TATAT
1 TATAT
75774996 TTTATATCAT
Statistics
Matches: 64, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
34 33 0.52
35 23 0.36
36 4 0.06
37 4 0.06
ACGTcount: A:0.49, C:0.13, G:0.01, T:0.37
Consensus pattern (34 bp):
TATATAACTTATATAACTTACATAATACTTAAAA
Found at i:75775049 original size:43 final size:43
Alignment explanation
Indices: 75774841--75775049 Score: 153
Period size: 44 Copynumber: 4.8 Consensus size: 43
75774831 TGAAATAAAA
* * *
75774841 AACTTACATAATACATAAATATATTTGATATCATAATTTACAT
1 AACTTACATAATACTTAAATATATATCATATCATAATTTACAT
* * * * * *
75774884 AACTTATATAACATA-TATAACTTACATAACTTAT-ATAA-CTACAT
1 AACTTACAT-A-ATACT-TAA-ATATATATCATATCATAATTTACAT
* * * *
75774928 AACTTATAT-A-ACTT-AATAACTTAGATAAATAT-ATAACTTACAT
1 AACTTACATAATACTTAAAT-A--TATAT-CATATCATAATTTACAT
* *
75774971 AACTTACATAATACTTAAAATATATTTTATATCATAATTTACAT
1 AACTTACATAATACTT-AAATATATATCATATCATAATTTACAT
75775015 AACTTACATAATACTTAAATATATATCATATCATA
1 AACTTACATAATACTTAAATATATATCATATCATA
75775050 CATAACTAGT
Statistics
Matches: 128, Mismatches: 23, Indels: 30
0.71 0.13 0.17
Matches are distributed among these distances:
38 1 0.01
39 2 0.02
40 2 0.02
41 4 0.03
42 7 0.05
43 42 0.33
44 45 0.35
45 14 0.11
46 8 0.06
47 3 0.02
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.39
Consensus pattern (43 bp):
AACTTACATAATACTTAAATATATATCATATCATAATTTACAT
Found at i:75780686 original size:21 final size:21
Alignment explanation
Indices: 75780653--75780703 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
75780643 ACAACTTAGA
*
75780653 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
75780674 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
75780695 GCAGAGGCA
1 GCAGAGGCA
75780704 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:75780981 original size:33 final size:33
Alignment explanation
Indices: 75780942--75781021 Score: 83
Period size: 31 Copynumber: 2.5 Consensus size: 33
75780932 TAAATTAATA
* *
75780942 TTTTTGGTTGTATTTTTTATGTTAAATTTGCTG
1 TTTTTGGTTGCATTTTTTATATTAAATTTGCTG
* * *
75780975 TTTTTGGCTGCA--TTTTATATTATATTTGTTG
1 TTTTTGGTTGCATTTTTTATATTAAATTTGCTG
* *
75781006 TATTTGGTTGGATTTT
1 TTTTTGGTTGCATTTT
75781022 AATGCAGGAA
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
31 25 0.68
33 12 0.32
ACGTcount: A:0.15, C:0.04, G:0.19, T:0.62
Consensus pattern (33 bp):
TTTTTGGTTGCATTTTTTATATTAAATTTGCTG
Found at i:75781156 original size:43 final size:43
Alignment explanation
Indices: 75781095--75781387 Score: 478
Period size: 43 Copynumber: 6.8 Consensus size: 43
75781085 GTAAAAAAAG
* *
75781095 CGCCGCTAAAAGCCTTGACCTTTAGCAGAGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
75781138 CGCCGCTAAAAGCCTTGACCTTTAACGGCGCTTTACCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
75781181 CGCCGCTAAAAGCCTTGACCTTTAGCGGCACTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* **
75781224 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTACGTACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
75781267 CGCCGCTAAAAGCCTCGACCTTTAGCGGCGCTTTTCCTACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
75781310 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
75781353 CGCCGCTAAAAGACTTGACCTTTAGCGGCGTTTTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT
75781388 TTCCAATAAA
Statistics
Matches: 232, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 232 1.00
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:75782449 original size:16 final size:16
Alignment explanation
Indices: 75782425--75782455 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75782415 AGGATGAAAT
*
75782425 AAAATTAAAATAAAAG
1 AAAAATAAAATAAAAG
75782441 AAAAATAAAATAAAA
1 AAAAATAAAATAAAA
75782456 AGTAGTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (16 bp):
AAAAATAAAATAAAAG
Found at i:75782456 original size:11 final size:11
Alignment explanation
Indices: 75782421--75782456 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
75782411 ACTAAGGATG
*
75782421 AAATAAAATTA
1 AAATAAAATAA
*
75782432 AAATAAAAGAA
1 AAATAAAATAA
75782443 AAATAAAATAA
1 AAATAAAATAA
75782454 AAA
1 AAA
75782457 GTAGTTTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.17
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:75791618 original size:27 final size:27
Alignment explanation
Indices: 75791578--75791648 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
75791568 GGCAAAACAA
* *
75791578 TCATTTTACCCTACAGGGGTATGTCT-G
1 TCATTTTACACTACAAGGGTAT-TCTGG
*
75791605 TCATTTTACACTACAAGGGTATTTTGG
1 TCATTTTACACTACAAGGGTATTCTGG
*
75791632 TAATTTTACACTACAAG
1 TCATTTTACACTACAAG
75791649 AGTGTTTCGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 2 0.05
27 37 0.95
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (27 bp):
TCATTTTACACTACAAGGGTATTCTGG
Found at i:75791662 original size:27 final size:27
Alignment explanation
Indices: 75791607--75791666 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
75791597 TATGTCTGTC
* * *
75791607 ATTTTACACTACAAGGGTATTTTGGTA
1 ATTTTACACTACAAGAGTATTTCGATA
*
75791634 ATTTTACACTACAAGAGTGTTTCGATA
1 ATTTTACACTACAAGAGTATTTCGATA
75791661 ATTTTA
1 ATTTTA
75791667 TAAATCGGGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.42
Consensus pattern (27 bp):
ATTTTACACTACAAGAGTATTTCGATA
Found at i:75791680 original size:27 final size:27
Alignment explanation
Indices: 75791653--75791985 Score: 323
Period size: 27 Copynumber: 12.4 Consensus size: 27
75791643 TACAAGAGTG
* * *
75791653 TTTCGATAATTTTATAAATCGGGGGTG
1 TTTCGATAATTTTACAAATCGAGGGTA
75791680 TTTCGATAATTTTACAAATCGAGGGTA
1 TTTCGATAATTTTACAAATCGAGGGTA
*
75791707 TTTCGATAATTTTACAAATCGAGGGTG
1 TTTCGATAATTTTACAAATCGAGGGTA
* * * * *
75791734 TTTCGGTAATTTCATAAATTGAGGGTG
1 TTTCGATAATTTTACAAATCGAGGGTA
**
75791761 TTTAAATAATTTTACAAATCGAGGGTA
1 TTTCGATAATTTTACAAATCGAGGGTA
* *
75791788 TTTCGATAATTTTACAAATCAAAGGTA
1 TTTCGATAATTTTACAAATCGAGGGTA
* * * *
75791815 TTTTGGTAATTTCAC-AATTGAGGGTA
1 TTTCGATAATTTTACAAATCGAGGGTA
* **
75791841 TTTCAATAATTTTACAAAT-TTGGGTA
1 TTTCGATAATTTTACAAATCGAGGGTA
* *
75791867 TTTCGGTAATTTTACAAATCGAGGGTG
1 TTTCGATAATTTTACAAATCGAGGGTA
* * * *
75791894 TTTCGGTAATTTCACAAGTCGGGGGTA
1 TTTCGATAATTTTACAAATCGAGGGTA
* * * *
75791921 TTTCGGTAATTTTATAATTCGAGAGTA
1 TTTCGATAATTTTACAAATCGAGGGTA
* *
75791948 TTTTGGTAA-TTT-CATAATCGAGGGTA
1 TTTCGATAATTTTACA-AATCGAGGGTA
* *
75791974 TTTTGGTAATTT
1 TTTCGATAATTT
75791986 CTCTTTATTA
Statistics
Matches: 253, Mismatches: 49, Indels: 8
0.82 0.16 0.03
Matches are distributed among these distances:
25 1 0.00
26 62 0.25
27 190 0.75
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
TTTCGATAATTTTACAAATCGAGGGTA
Found at i:75791984 original size:133 final size:134
Alignment explanation
Indices: 75791653--75791985 Score: 373
Period size: 133 Copynumber: 2.5 Consensus size: 134
75791643 TACAAGAGTG
* *** * * * *
75791653 TTTCGATAATTTTATAAATCGGGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTCGATAATT
1 TTTCGATAATTTTACAAATCAAAGGTATTTTGGTAATTTCAC-AATCGAGGGTATTTCGATAATT
* * * *
75791718 TTACAAATCGAGGGTGTTTCGGTAATTTCATAAATTGAGGGTGTTTAAATAATTTTACAAATCGA
65 TTACAAATCGAGGGTATTTCGGTAATTTCACAAATCGAGGGTGTTTAAATAATTTCACAAATCGA
75791783 GGGTA
130 GGGTA
* *
75791788 TTTCGATAATTTTACAAATCAAAGGTATTTTGGTAATTTCACAATTGAGGGTATTTCAATAATTT
1 TTTCGATAATTTTACAAATCAAAGGTATTTTGGTAATTTCACAATCGAGGGTATTTCGATAATTT
** * *** * *
75791853 TACAAAT-TTGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTCACAAGTCGGG
66 TACAAATCGAGGGTATTTCGGTAATTTCACAAATCGAGGGTGTTTAAATAATTTCACAAATCGAG
75791917 GGTA
131 GGTA
* * * * * * *
75791921 TTTCGGTAATTTTATAATTC-GAGAGTATTTTGGTAATTTCATAATCGAGGGTATTTTGGTAATT
1 TTTCGATAATTTTACAAATCAAAG-GTATTTTGGTAATTTCACAATCGAGGGTATTTCGATAATT
75791985 T
65 T
75791986 CTCTTTATTA
Statistics
Matches: 166, Mismatches: 31, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
132 2 0.01
133 102 0.61
134 28 0.17
135 34 0.20
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (134 bp):
TTTCGATAATTTTACAAATCAAAGGTATTTTGGTAATTTCACAATCGAGGGTATTTCGATAATTT
TACAAATCGAGGGTATTTCGGTAATTTCACAAATCGAGGGTGTTTAAATAATTTCACAAATCGAG
GGTA
Found at i:75792346 original size:28 final size:28
Alignment explanation
Indices: 75792315--75792394 Score: 133
Period size: 28 Copynumber: 2.9 Consensus size: 28
75792305 CCCAATATCG
*
75792315 TTCACATGGCCCATCAGGCCCAACCACA
1 TTCATATGGCCCATCAGGCCCAACCACA
* *
75792343 TTCATATGGCCTATCAGGCCCAATCACA
1 TTCATATGGCCCATCAGGCCCAACCACA
75792371 TTCATATGGCCCATCAGGCCCAAC
1 TTCATATGGCCCATCAGGCCCAAC
75792395 TACTTTTGTG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.28, C:0.38, G:0.15, T:0.20
Consensus pattern (28 bp):
TTCATATGGCCCATCAGGCCCAACCACA
Found at i:75793834 original size:70 final size:71
Alignment explanation
Indices: 75793683--75793845 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
75793673 GAGATGTATC
75793683 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
75793748 AGGACA
66 AGGACA
75793754 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
75793818 CGGACA
66 AGGACA
75793824 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
75793846 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:75801364 original size:70 final size:71
Alignment explanation
Indices: 75801213--75801375 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
75801203 GAGATGTATC
75801213 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
75801278 AGGACA
66 AGGACA
75801284 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
75801348 CGGACA
66 AGGACA
75801354 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
75801376 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:75807691 original size:28 final size:28
Alignment explanation
Indices: 75807660--75807731 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 28
75807650 AGCCCACTTG
*
75807660 GCCCAATCTC-TTTCATATGGCCCATTAA
1 GCCCAATCACATTT-ATATGGCCCATTAA
* *
75807688 GCCCAATCACATTTATGTGGCCCATTAG
1 GCCCAATCACATTTATATGGCCCATTAA
*
75807716 GCCCAAATTACATTTA
1 GCCC-AATCACATTTA
75807732 CAGTCATTCT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 25 0.66
29 13 0.34
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.31
Consensus pattern (28 bp):
GCCCAATCACATTTATATGGCCCATTAA
Found at i:75809361 original size:61 final size:61
Alignment explanation
Indices: 75809274--75809389 Score: 196
Period size: 61 Copynumber: 1.9 Consensus size: 61
75809264 AGTTGAGGAT
* *
75809274 ATTGACATCGCATTACCTTCTCAGGTTCCCAAGTAGCCTCCTTAGCCTTGTGATTGAGGGC
1 ATTGACATCGCATTACCTTCTCAGGTTCCCAAGTAGCCACCTCAGCCTTGTGATTGAGGGC
* *
75809335 ATTGACATCGCATTGCCTTCTCAGGTTCCCAAGTAGCCACCTCAGTCTTGTGATT
1 ATTGACATCGCATTACCTTCTCAGGTTCCCAAGTAGCCACCTCAGCCTTGTGATT
75809390 ACGCCATAGC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.20, C:0.28, G:0.20, T:0.32
Consensus pattern (61 bp):
ATTGACATCGCATTACCTTCTCAGGTTCCCAAGTAGCCACCTCAGCCTTGTGATTGAGGGC
Found at i:75816132 original size:79 final size:80
Alignment explanation
Indices: 75815996--75816214 Score: 232
Period size: 79 Copynumber: 2.8 Consensus size: 80
75815986 GATGTCCGGG
* * * **
75815996 CTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGATTAAGAT-CCGAAGGCATTTGTGC
1 CTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGC
75816059 AAGTTACTAAATCCAGA
64 AAGTTACTAAATCCAGA
* * * *
75816076 CTAAGAT-CCGTAGGTATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGC
1 CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGC
* * *
75816138 GAGTTACTAAATCCGGG
64 AAGTTACTAAATCCAGA
* * *
75816155 TTATGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
75816215 AACAAGTAGC
Statistics
Matches: 115, Mismatches: 17, Indels: 14
0.79 0.12 0.10
Matches are distributed among these distances:
78 1 0.01
79 65 0.57
80 41 0.36
81 8 0.07
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (80 bp):
CTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAA
GTTACTAAATCCAGA
Found at i:75816194 original size:40 final size:39
Alignment explanation
Indices: 75815991--75816214 Score: 213
Period size: 40 Copynumber: 5.6 Consensus size: 39
75815981 CGAATGATGT
* * *
75815991 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
** *
75816031 CCGGATTAAGAT-CCGAAGGCATTTGTGCAAGTTACTAAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * * *
75816070 TCCAGACTAAGAT-CCGTAGGTATTTGTGCGAGTTACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
75816111 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
75816149 TCCGGGTTATGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
75816190 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
75816215 AACAAGTAGC
Statistics
Matches: 156, Mismatches: 20, Indels: 16
0.81 0.10 0.08
Matches are distributed among these distances:
39 32 0.21
40 114 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75816233 original size:119 final size:120
Alignment explanation
Indices: 75815990--75816221 Score: 258
Period size: 119 Copynumber: 1.9 Consensus size: 120
75815980 TCGAATGATG
* *
75815990 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGATTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGATTAAGATCCGAAGGCATTT
* * ** *
75816055 GTGCAAGTTACTAAATCCAGACTAAGATCCGTAGGTATTTGTGCGAGTTACTAAT
66 GTGCAAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGAACAAGTTACTAAT
* * * *
75816110 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGATTAAGAT-CCGAAGGCAT
* * * *
75816172 TTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACAAGT
64 TTGTGCAAGTTACTA-AATCCAGACTAAGAT-CCGAAGGCATTTGAACAAGT
75816222 AGCTATATCC
Statistics
Matches: 93, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
118 2 0.02
119 72 0.77
120 19 0.20
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGATTAAGATCCGAAGGCATTT
GTGCAAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGAACAAGTTACTAAT
Found at i:75816245 original size:79 final size:79
Alignment explanation
Indices: 75816043--75816247 Score: 184
Period size: 79 Copynumber: 2.6 Consensus size: 79
75816033 GGATTAAGAT
* ** * ** * *
75816043 CCGAAGGCATTTGTGCAAGTTACTAAATCCAGACTAAGA-TCCGTAGGTATTTGTGCGAGTTACT
1 CCGAAGGCATTGGAACAAGTTACTAAATCCGGGTTAA-ATTCCGAAGGCATTTGTGCGAGTTACT
*
75816107 AATTCCGGGCTAAGC
65 AATACCGGGCTAAGC
** * ** *
75816122 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTATGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTGGAACAAGTTACTAAATCCGGGTTAAATTCCGAAGGCATTTGTGCGAGTTACTA
*
75816186 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* *
75816202 CCGAAGGCATTTGAACAAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTGGAACAAGTTA-CTAAATCCGGGTTAAATTCCGAAGG
75816248 TACGTGATTC
Statistics
Matches: 102, Mismatches: 20, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
78 2 0.02
79 77 0.75
80 23 0.23
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTGGAACAAGTTACTAAATCCGGGTTAAATTCCGAAGGCATTTGTGCGAGTTACTA
ATACCGGGCTAAGC
Found at i:75824378 original size:119 final size:120
Alignment explanation
Indices: 75824154--75824378 Score: 289
Period size: 119 Copynumber: 1.9 Consensus size: 120
75824144 TTGAATGATA
* *
75824154 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
* *
75824219 GTGCGAGTTACTAAATCCGGACTAAGATCTGAAGGTATTTGTGCGAGTTACTAAT
66 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
* * **
75824274 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
* *
75824336 TTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
75824379 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
118 2 0.02
119 70 0.77
120 19 0.21
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:75824385 original size:40 final size:39
Alignment explanation
Indices: 75824155--75824378 Score: 249
Period size: 40 Copynumber: 5.6 Consensus size: 39
75824145 TGAATGATAT
* * *
75824155 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
*
75824195 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
75824234 TCCGGACTAAGAT-CTGAAGGTATTTGTGCGAGTTACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
75824275 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75824313 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
75824354 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
75824379 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
39 33 0.21
40 117 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75824401 original size:79 final size:80
Alignment explanation
Indices: 75824153--75824378 Score: 291
Period size: 79 Copynumber: 2.8 Consensus size: 80
75824143 TTTGAATGAT
* * *
75824153 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCA
75824216 TTTGTGCGAGTTACTAA
64 TTTGTGCGAGTTACTAA
* * *
75824233 ATCCGGACTAAGAT-CTGAAGGTATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCA
*
75824295 TTGGTGCGAGTTACTAA
64 TTTGTGCGAGTTACTAA
* * *
75824312 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATT
75824377 TG
66 TG
75824379 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 68 0.54
80 48 0.38
81 8 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATT
TGTGCGAGTTACTAA
Found at i:75824409 original size:79 final size:79
Alignment explanation
Indices: 75824167--75824411 Score: 259
Period size: 79 Copynumber: 3.1 Consensus size: 79
75824157 GGGCTAAGTC
* * *
75824167 CCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTAC
1 CCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTAC
*
75824230 TAAATCCGGACTAAGA-T
64 TAAATCCGG-TTAA-ATT
* * *
75824247 CTGAAGGTATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 CCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
75824310 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATT
* * **
75824326 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
*
75824390 ATATCCGGTTAAATT
65 AAATCCGGTTAAATT
75824405 CCGAAGG
1 CCGAAGG
75824412 TATGTGATTC
Statistics
Matches: 138, Mismatches: 19, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
79 81 0.59
80 50 0.36
81 7 0.05
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
AATCCGGTTAAATT
Found at i:75826959 original size:29 final size:29
Alignment explanation
Indices: 75826902--75826985 Score: 134
Period size: 29 Copynumber: 2.9 Consensus size: 29
75826892 CTCTTTCATA
*
75826902 TGGCCCATTAAGCCC-AATCACATTTATG
1 TGGCCCATTAGGCCCAAATCACATTTATG
*
75826930 TGGCTCATTAGGCCCAAATCACATTTATG
1 TGGCCCATTAGGCCCAAATCACATTTATG
*
75826959 TGGCCCATTAGGCCCAAATTACATTTA
1 TGGCCCATTAGGCCCAAATCACATTTA
75826986 CAGTTATGCT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 13 0.25
29 38 0.75
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATG
Found at i:75831389 original size:33 final size:34
Alignment explanation
Indices: 75831331--75831394 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 34
75831321 GCATTTTGTA
**
75831331 CTGATACTGTTTTTGAAATGGGCTAAGGCCCGCT
1 CTGATACTGTTACTGAAATGGGCTAAGGCCCGCT
75831365 CTGATACTGTTACTG-AATGGGCTAAGGCCC
1 CTGATACTGTTACTGAAATGGGCTAAGGCCC
75831395 TAACTGAGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 15 0.54
34 13 0.46
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.30
Consensus pattern (34 bp):
CTGATACTGTTACTGAAATGGGCTAAGGCCCGCT
Found at i:75835101 original size:40 final size:40
Alignment explanation
Indices: 75835056--75835185 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
75835046 CGGAATAGAA
75835056 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
75835096 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
75835136 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
75835176 CCGGATATAA
1 CCGGATATAA
75835186 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:75837649 original size:29 final size:29
Alignment explanation
Indices: 75837588--75837707 Score: 183
Period size: 29 Copynumber: 4.2 Consensus size: 29
75837578 TACATACATG
* *
75837588 CATATGGCCCACTAGGCAC-AATCTCATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
75837616 CATATGGCCCATTAGGCCCAAATCAT-ATT
1 CATATGGCCCATTAGGCCCAAATC-TCATT
75837645 CATATGGCCCATTAGGCCCAAAT-TACATT
1 CATATGGCCCATTAGGCCCAAATCT-CATT
75837674 CATATGGCCCATTAGGCCCAAATCTCATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
75837703 CATAT
1 CATAT
75837708 ACATGCTTTC
Statistics
Matches: 85, Mismatches: 2, Indels: 9
0.89 0.02 0.09
Matches are distributed among these distances:
27 1 0.01
28 17 0.20
29 65 0.76
30 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCTCATT
Done.