Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 245 of 410
Found at i:75837939 original size:16 final size:16
Alignment explanation
Indices: 75837918--75837960 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
75837908 GTAGCCAAAC
75837918 TTTTAGCTTTTCAGCA
1 TTTTAGCTTTTCAGCA
* *
75837934 TTTTAGCTTTTCGGTA
1 TTTTAGCTTTTCAGCA
*
75837950 TTTTGGCTTTT
1 TTTTAGCTTTT
75837961 GCCGATCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.12, C:0.14, G:0.16, T:0.58
Consensus pattern (16 bp):
TTTTAGCTTTTCAGCA
Found at i:75841323 original size:30 final size:30
Alignment explanation
Indices: 75841287--75841387 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
75841277 GACAAGATTG
* * *
75841287 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
75841317 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
75841345 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
75841374 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75841388 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:75841399 original size:29 final size:28
Alignment explanation
Indices: 75841316--75841391 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
75841306 AAAATTGTAC
* *
75841316 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
75841344 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
75841373 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
75841392 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:75849192 original size:30 final size:30
Alignment explanation
Indices: 75849156--75849256 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
75849146 GACAAGATTG
* * *
75849156 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
75849186 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
75849214 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
75849243 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75849257 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:75849268 original size:29 final size:28
Alignment explanation
Indices: 75849185--75849260 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
75849175 AAAATTGTAC
* *
75849185 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
75849213 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
75849242 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
75849261 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:75853384 original size:40 final size:40
Alignment explanation
Indices: 75853339--75853431 Score: 132
Period size: 40 Copynumber: 2.3 Consensus size: 40
75853329 GCGGTACTAC
* * *
75853339 ATAGCTTTGTCTATATATGGCACTTAGTGTGCGATTTGAG
1 ATAGCTTCGGCTATATATGGCACCTAGTGTGCGATTTGAG
*
75853379 ATAGCTTCGGCTATATATGGCACCTAGTGTGCGATTTGCG
1 ATAGCTTCGGCTATATATGGCACCTAGTGTGCGATTTGAG
* *
75853419 ATAACTTCAGCTA
1 ATAGCTTCGGCTA
75853432 CCTACGACAA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (40 bp):
ATAGCTTCGGCTATATATGGCACCTAGTGTGCGATTTGAG
Found at i:75853447 original size:40 final size:40
Alignment explanation
Indices: 75853362--75853452 Score: 101
Period size: 40 Copynumber: 2.3 Consensus size: 40
75853352 TATATGGCAC
* * * * * *
75853362 TTAGTGTGCGATTTGAGATAGCTTCGGCTATATATGGCAC
1 TTAGTGTGCGATTTGAGATAACTTCAGCTACATACGACAA
* * *
75853402 CTAGTGTGCGATTTGCGATAACTTCAGCTACCTACGACAA
1 TTAGTGTGCGATTTGAGATAACTTCAGCTACATACGACAA
75853442 TTAGTGTGCGA
1 TTAGTGTGCGA
75853453 GATATCAAGT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (40 bp):
TTAGTGTGCGATTTGAGATAACTTCAGCTACATACGACAA
Found at i:75853495 original size:28 final size:28
Alignment explanation
Indices: 75853442--75853506 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
75853432 CCTACGACAA
*
75853442 TTAGTGTGCGAGATATCAAGTGTGGCAC
1 TTAGTGTGCGAGATATCAAGTATGGCAC
* **
75853470 TTAGTGTGCGAGTTATTGAGTATGGCAC
1 TTAGTGTGCGAGATATCAAGTATGGCAC
75853498 TTAGTGTGC
1 TTAGTGTGC
75853507 AAAAAATTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.22, C:0.12, G:0.32, T:0.34
Consensus pattern (28 bp):
TTAGTGTGCGAGATATCAAGTATGGCAC
Found at i:75853515 original size:28 final size:28
Alignment explanation
Indices: 75853464--75853520 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
75853454 ATATCAAGTG
* ***
75853464 TGGCACTTAGTGTGCGAGTTATTGAGTA
1 TGGCACTTAGTGTGCAAAAAATTGAGTA
75853492 TGGCACTTAGTGTGCAAAAAATTGAGTA
1 TGGCACTTAGTGTGCAAAAAATTGAGTA
75853520 T
1 T
75853521 TCAACGACAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.28, C:0.11, G:0.28, T:0.33
Consensus pattern (28 bp):
TGGCACTTAGTGTGCAAAAAATTGAGTA
Found at i:75855478 original size:40 final size:39
Alignment explanation
Indices: 75855398--75855615 Score: 199
Period size: 40 Copynumber: 5.5 Consensus size: 39
75855388 GATGTCCGGG
* * * * *
75855398 CTAAGTCCCAAGGC-TTTGTGCTAAGTGACTATATCCGGA
1 CTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAATTCGGA
*
75855437 CTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATTTGGA
1 CTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATTCGGA
* *
75855477 CTAAGATCCGAAGGTATTTGTGCGAGTTACT-AATTCCGGG
1 CTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATT-CGGA
* * * *
75855517 CTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGG
1 CTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATTCGGA
* * * *
75855556 TTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA-CCGGG
1 CTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AATTCGGA
*
75855596 CTATGTCCCGAAGGCATTTG
1 CTAAGT-CCGAAGGCATTTG
75855616 AATGAGTAGC
Statistics
Matches: 153, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 39 0.25
40 105 0.69
41 9 0.06
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (39 bp):
CTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATTCGGA
Found at i:75855527 original size:79 final size:80
Alignment explanation
Indices: 75855392--75855615 Score: 244
Period size: 79 Copynumber: 2.8 Consensus size: 80
75855382 TCGAATGATG
* * * * *
75855392 TCCGGGCTAAGTCCC-AAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGACTAAGTCCCAAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
75855454 TTGTGCGAGTTACTAAA
64 TTGTGCGAGTTACTAAA
** * * *
75855471 TTTGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGACTAAG-TCCCAAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
75855533 TGGTGCGAGTTACTAAA
64 TTGTGCGAGTTACTAAA
** *
75855550 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
75855615 G
66 G
75855616 AATGAGTAGC
Statistics
Matches: 120, Mismatches: 17, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
78 1 0.01
79 76 0.63
80 36 0.30
81 7 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGACTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:75863775 original size:40 final size:39
Alignment explanation
Indices: 75863545--75863768 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 39
75863535 CGAATGATGT
* * * *
75863545 CCGGGCTAAGTCCCGAAGGC-TTTGCGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
*
75863585 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * * *
75863624 TCTGGACTAAGTTCCGAAGGTATTTGTGCGAGTTACTAATT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
75863665 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75863703 CCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
75863744 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
75863769 AACGAGTAGC
Statistics
Matches: 158, Mismatches: 18, Indels: 16
0.82 0.09 0.08
Matches are distributed among these distances:
39 35 0.22
40 114 0.72
41 9 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75863790 original size:79 final size:79
Alignment explanation
Indices: 75863551--75863791 Score: 258
Period size: 79 Copynumber: 3.0 Consensus size: 79
75863541 ATGTCCGGGC
* * * *
75863551 TAAGTCCCGAAGGC-TTTGCGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCG
* *
75863614 AGTTACTAAATCTGGAC
64 AGTTACTAAATCCGG-T
* * *
75863631 TAAGTTCCGAAGGTATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
*
75863694 GTTACTAAACCCGGGT
65 GTTACTAAATCC-GGT
* * **
75863710 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
75863775 -TAGCTATATCCGGT
66 TTA-CTAAATCCGGT
75863789 TAA
1 TAA
75863792 ATTCCAAACG
Statistics
Matches: 135, Mismatches: 19, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
79 74 0.55
80 55 0.41
81 6 0.04
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TTACTAAATCCGGT
Found at i:75865865 original size:29 final size:29
Alignment explanation
Indices: 75865831--75865990 Score: 101
Period size: 29 Copynumber: 5.6 Consensus size: 29
75865821 TACTCGATTT
* * *
75865831 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
75865860 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
75865889 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
75865918 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* ** * *
75865947 TGCACACTTAGTGCCATA-TTTTCCAGCA
1 CGCACACTTAGTGCCATACCATTCAAGCC
*
75865975 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
75865991 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
28 24 0.21
29 92 0.79
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:75865923 original size:58 final size:59
Alignment explanation
Indices: 75865830--75865990 Score: 195
Period size: 58 Copynumber: 2.8 Consensus size: 59
75865820 ATACTCGATT
** * ** * * *
75865830 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
* *
75865888 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
75865947 T-GCACACTTAGTGCCATAT-TTTCCAGCATGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
75865991 ATCTCGTCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
57 29 0.32
58 61 0.67
59 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.27
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
Found at i:75865978 original size:28 final size:29
Alignment explanation
Indices: 75865890--75865990 Score: 195
Period size: 29 Copynumber: 3.5 Consensus size: 29
75865880 CTTCGAGCTC
75865890 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
75865919 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
75865948 GCACACTTAGTGCCATAT-TTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
75865976 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
75865991 ATCTCGTCAC
Statistics
Matches: 72, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
28 25 0.35
29 47 0.65
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:75873361 original size:29 final size:29
Alignment explanation
Indices: 75873328--75873487 Score: 101
Period size: 29 Copynumber: 5.6 Consensus size: 29
75873318 TACTCGATTT
* * *
75873328 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
75873357 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
75873386 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
75873415 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* ** * *
75873444 TGCACACTTAGTGCCATA-TTTTCCAGCA
1 CGCACACTTAGTGCCATACCATTCAAGCC
*
75873472 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
75873488 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
28 24 0.21
29 92 0.79
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:75873420 original size:58 final size:59
Alignment explanation
Indices: 75873327--75873487 Score: 195
Period size: 58 Copynumber: 2.8 Consensus size: 59
75873317 ATACTCGATT
** * ** * * *
75873327 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
* *
75873385 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
75873444 T-GCACACTTAGTGCCATAT-TTTCCAGCATGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
75873488 ATCTCGTCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
57 29 0.32
58 61 0.67
59 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.27
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
Found at i:75873475 original size:28 final size:29
Alignment explanation
Indices: 75873387--75873487 Score: 195
Period size: 29 Copynumber: 3.5 Consensus size: 29
75873377 CTTCGAGCTC
75873387 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
75873416 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
75873445 GCACACTTAGTGCCATAT-TTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
75873473 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
75873488 ATCTCGTCAC
Statistics
Matches: 72, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
28 25 0.35
29 47 0.65
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:75895663 original size:32 final size:32
Alignment explanation
Indices: 75895622--75895685 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
75895612 TAATGGGGTA
75895622 AGTTTCTACTCTTTGTTGTCCATGCCTTAATC
1 AGTTTCTACTCTTTGTTGTCCATGCCTTAATC
75895654 AGTTTCTACTCTTTGTTGTCCATGCCTTAATC
1 AGTTTCTACTCTTTGTTGTCCATGCCTTAATC
75895686 CCAAACTGTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.16, C:0.25, G:0.12, T:0.47
Consensus pattern (32 bp):
AGTTTCTACTCTTTGTTGTCCATGCCTTAATC
Found at i:75895813 original size:6 final size:6
Alignment explanation
Indices: 75895804--75895828 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
75895794 TTAAAGGCAG
75895804 AGATAA AGATAA AGATAA AGATAA A
1 AGATAA AGATAA AGATAA AGATAA A
75895829 AATGGGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (6 bp):
AGATAA
Found at i:75895846 original size:19 final size:18
Alignment explanation
Indices: 75895818--75895862 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
75895808 AAAGATAAAG
* *
75895818 ATAAAGATAAAAATGGGAA
1 ATAAAAATAAAAAT-AGAA
*
75895837 ATAAAAATAAAACTAGAA
1 ATAAAAATAAAAATAGAA
75895855 ATAAAAAT
1 ATAAAAAT
75895863 TTTAAAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.69, C:0.02, G:0.11, T:0.18
Consensus pattern (18 bp):
ATAAAAATAAAAATAGAA
Found at i:75901172 original size:42 final size:41
Alignment explanation
Indices: 75901113--75901209 Score: 140
Period size: 42 Copynumber: 2.3 Consensus size: 41
75901103 ATAACCCAGT
* *
75901113 TATGGTCTTACACGAAGTCCCATATCGATGCCATATCCTACA
1 TATGGTCTTACATGAAGTCCCATATCGATGCCAT-TCCCACA
* * *
75901155 TATGGTCTTACATGAAGTCTCATATCGATTCCATTCCCAGA
1 TATGGTCTTACATGAAGTCCCATATCGATGCCATTCCCACA
75901196 TATGGTCTTACATG
1 TATGGTCTTACATG
75901210 TAATCTCAGT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 19 0.38
42 31 0.62
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (41 bp):
TATGGTCTTACATGAAGTCCCATATCGATGCCATTCCCACA
Found at i:75903516 original size:27 final size:27
Alignment explanation
Indices: 75903486--75903668 Score: 244
Period size: 27 Copynumber: 6.8 Consensus size: 27
75903476 CCTTAATCGA
75903486 TAAAATGACTATTTTGCCCTTAT-AGGG
1 TAAAATGACTATTTTGCCCTTATGA-GG
75903513 TAAAATGACTATTTTGCCCTTAT-AGGG
1 TAAAATGACTATTTTGCCCTTATGA-GG
* *
75903540 TAAAATGACTCTTTTGCCCTTATGAAG
1 TAAAATGACTATTTTGCCCTTATGAGG
**
75903567 TAAAATGACTGCTTTGCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* * *
75903594 TAAAATGACTGTTTTTCCCTTATGAAG
1 TAAAATGACTATTTTGCCCTTATGAGG
* *
75903621 TAAAATGACTACTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGAGG
*
75903648 TAAAATGACTGTTTTGCCCTT
1 TAAAATGACTATTTTGCCCTT
75903669 TTATGGTAAG
Statistics
Matches: 140, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
27 139 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGAGG
Found at i:75903544 original size:54 final size:54
Alignment explanation
Indices: 75903486--75903668 Score: 271
Period size: 54 Copynumber: 3.4 Consensus size: 54
75903476 CCTTAATCGA
* * *
75903486 TAAAATGACTATTTTGCCCTTAT-AGGGTAAAATGACTATTTTGCCCTTAT-AGGG
1 TAAAATGACTGTTTTGCCCTTATGA-AGTAAAATGACTACTTTGCCCTTATGA-GG
* *
75903540 TAAAATGACTCTTTTGCCCTTATGAAGTAAAATGACTGCTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAAGTAAAATGACTACTTTGCCCTTATGAGG
* *
75903594 TAAAATGACTGTTTTTCCCTTATGAAGTAAAATGACTACTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGAAGTAAAATGACTACTTTGCCCTTATGAGG
75903648 TAAAATGACTGTTTTGCCCTT
1 TAAAATGACTGTTTTGCCCTT
75903669 TTATGGTAAG
Statistics
Matches: 118, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
54 116 0.98
55 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (54 bp):
TAAAATGACTGTTTTGCCCTTATGAAGTAAAATGACTACTTTGCCCTTATGAGG
Found at i:75904076 original size:23 final size:24
Alignment explanation
Indices: 75904050--75904097 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
75904040 CATTGTTTAT
75904050 TGTTACTGCACTG-TTACTATTAC
1 TGTTACTGCACTGTTTACTATTAC
* *
75904073 TGTTAGTGCACTGTTTACTGTTAC
1 TGTTACTGCACTGTTTACTATTAC
75904097 T
1 T
75904098 ACAATGGGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.19, C:0.19, G:0.17, T:0.46
Consensus pattern (24 bp):
TGTTACTGCACTGTTTACTATTAC
Found at i:75904974 original size:45 final size:44
Alignment explanation
Indices: 75904806--75904970 Score: 154
Period size: 45 Copynumber: 3.7 Consensus size: 44
75904796 TGCATCCACT
* * * * *
75904806 ATGACCTCGGACCAACTCAACGAGCTTGGATGCT-AGCATCTATA
1 ATGAACTCAGACCAACTCAACGAGCTCGGATGCTCA-CATATATC
75904850 ATGAACTCAGACCAACTCAACGAGCTCGGATGCTTCACATATA-C
1 ATGAACTCAGACCAACTCAACGAGCTCGGATGC-TCACATATATC
* * * * * ** *
75904894 TACGAAATTAGACCAACTCAACAAGTTCAAATTTCTCACATATATC
1 -ATGAACTCAGACCAACTCAACGAGCTCGGA-TGCTCACATATATC
*
75904940 ATGAACTCGGACCAACTCAACGAGCTCGGAT
1 ATGAACTCAGACCAACTCAACGAGCTCGGAT
75904971 TTCTTAATTC
Statistics
Matches: 95, Mismatches: 21, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
44 31 0.33
45 60 0.63
46 4 0.04
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (44 bp):
ATGAACTCAGACCAACTCAACGAGCTCGGATGCTCACATATATC
Found at i:75905193 original size:14 final size:16
Alignment explanation
Indices: 75905161--75905199 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
75905151 ATTTACATAA
*
75905161 CATATATCACATATTT
1 CATATATCACATATGT
75905177 CATATATCAC-T-TGT
1 CATATATCACATATGT
75905191 CATATATCA
1 CATATATCA
75905200 TCATTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.36, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
CATATATCACATATGT
Found at i:75907721 original size:15 final size:14
Alignment explanation
Indices: 75907682--75907733 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 14
75907672 ACATGAAAAC
*
75907682 CAAGATAAAGAAGT
1 CAAGATAAAGAAAT
*
75907696 ACAAGACAAAGAAAT
1 -CAAGATAAAGAAAT
75907711 CATAGATAAAGAAAT
1 CA-AGATAAAGAAAT
75907726 CCAAGATA
1 -CAAGATA
75907734 CAAAAATCCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
14 2 0.06
15 28 0.88
16 2 0.06
ACGTcount: A:0.60, C:0.12, G:0.15, T:0.13
Consensus pattern (14 bp):
CAAGATAAAGAAAT
Found at i:75907740 original size:15 final size:15
Alignment explanation
Indices: 75907722--75907751 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
75907712 ATAGATAAAG
75907722 AAATCCAAGATACAA
1 AAATCCAAGATACAA
*
75907737 AAATCCAATATACAA
1 AAATCCAAGATACAA
75907752 TATCATAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.60, C:0.20, G:0.03, T:0.17
Consensus pattern (15 bp):
AAATCCAAGATACAA
Found at i:75910176 original size:46 final size:46
Alignment explanation
Indices: 75910123--75910298 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
75910113 TATTTGGGCA
75910123 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75910169 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75910214 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
75910262 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75910299 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75910278 original size:93 final size:93
Alignment explanation
Indices: 75910119--75910290 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75910109 GGGATATTTG
* *
75910119 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75910184 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
75910212 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75910277 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
75910291 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:75913282 original size:15 final size:15
Alignment explanation
Indices: 75913243--75913321 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
75913233 GTATCTTGGG
*
75913243 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
75913258 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
75913273 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
75913287 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
75913302 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
75913316 TTTCTT
1 TTTCTT
75913322 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:75913306 original size:29 final size:29
Alignment explanation
Indices: 75913234--75913320 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
75913224 CATAGTATCG
* * * *
75913234 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
75913264 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
75913293 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
75913321 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:75915758 original size:46 final size:46
Alignment explanation
Indices: 75915705--75915880 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
75915695 TATTTGGGCA
75915705 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75915751 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75915796 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
75915844 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75915881 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75915860 original size:93 final size:93
Alignment explanation
Indices: 75915701--75915872 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75915691 GGGATATTTG
* *
75915701 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75915766 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
75915794 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75915859 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
75915873 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:75920031 original size:44 final size:44
Alignment explanation
Indices: 75919962--75920048 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
75919952 TACATGTATT
* *
75919962 GCATCCATTATGAACTCAGAACAACTCAACGAGCTTGGATGCTC
1 GCATCCATAATGAACTCAGAACAACTCAACGAGCTCGGATGCTC
75920006 GCATCCATAATGAACTC-GAACCAACTCAACGAGCTCGGATGCT
1 GCATCCATAATGAACTCAGAA-CAACTCAACGAGCTCGGATGCT
75920049 TTACATATAC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
43 3 0.08
44 37 0.93
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (44 bp):
GCATCCATAATGAACTCAGAACAACTCAACGAGCTCGGATGCTC
Found at i:75920138 original size:45 final size:45
Alignment explanation
Indices: 75919974--75920139 Score: 128
Period size: 45 Copynumber: 3.7 Consensus size: 45
75919964 ATCCATTATG
* * ** * **
75919974 AACTCAGAA-CAACTCAACGAGCTTGGA-TGCTCGCATCCATAATG
1 AACTC-GAACCAACTCAACGAGCTTGGATTTCTCACATATATCACA
*
75920018 AACTCGAACCAACTCAACGAGCTCGGATGCTT-T-ACATATA-CTACA
1 AACTCGAACCAACTCAACGAGCTTGGAT--TTCTCACATATATC-ACA
* * * * *
75920063 AACTTGGACCAAATCAACAAG-TTCGAATTTCTCACATATATCACA
1 AACTCGAACCAACTCAACGAGCTT-GGATTTCTCACATATATCACA
75920108 AACTCGAACCAACTCAACGAGCTTGGATTTCT
1 AACTCGAACCAACTCAACGAGCTTGGATTTCT
75920140 TAATTCCTAG
Statistics
Matches: 93, Mismatches: 19, Indels: 19
0.71 0.15 0.15
Matches are distributed among these distances:
43 5 0.05
44 24 0.26
45 59 0.63
46 4 0.04
47 1 0.01
ACGTcount: A:0.36, C:0.27, G:0.14, T:0.23
Consensus pattern (45 bp):
AACTCGAACCAACTCAACGAGCTTGGATTTCTCACATATATCACA
Found at i:75923416 original size:16 final size:16
Alignment explanation
Indices: 75923395--75923425 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75923385 GTAACGCCCT
75923395 AAAAATCCCGAAATCC
1 AAAAATCCCGAAATCC
*
75923411 AAAAATCTCGAAATC
1 AAAAATCCCGAAATC
75923426 TTAAATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.26, G:0.06, T:0.16
Consensus pattern (16 bp):
AAAAATCCCGAAATCC
Found at i:75924896 original size:29 final size:29
Alignment explanation
Indices: 75924861--75924916 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
75924851 TATTTGGGCC
* * *
75924861 TAATGGGCCGTATGAATGTGAATTGGGGT
1 TAATGGGCCATAAGAATATGAATTGGGGT
75924890 TAATGGGCCATAAGAATATGAATTGGG
1 TAATGGGCCATAAGAATATGAATTGGG
75924917 CCAGATGGGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.30, C:0.07, G:0.34, T:0.29
Consensus pattern (29 bp):
TAATGGGCCATAAGAATATGAATTGGGGT
Found at i:75924953 original size:28 final size:29
Alignment explanation
Indices: 75924892--75924958 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
75924882 ATTGGGGTTA
*
75924892 ATGGGCCATAAGAATATGAATTGGGCCAG
1 ATGGGCCATAAGAATAAGAATTGGGCCAG
**
75924921 ATGGGCCATTTGAATAAG-ATTGGGCCTAG
1 ATGGGCCATAAGAATAAGAATTGGGCC-AG
75924950 -TGGGCCATA
1 ATGGGCCATA
75924959 TGCATGTATG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 16 0.48
29 17 0.52
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
ATGGGCCATAAGAATAAGAATTGGGCCAG
Found at i:75927189 original size:27 final size:28
Alignment explanation
Indices: 75927133--75927202 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
75927123 AAACTTGTAC
75927133 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
75927161 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
75927188 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75927203 GACCACTATA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:75931028 original size:16 final size:16
Alignment explanation
Indices: 75931007--75931039 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
75930997 CTGTAACTCC
75931007 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
75931023 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
75931039 C
1 C
75931040 TTGAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.33, G:0.06, T:0.12
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:75932632 original size:28 final size:29
Alignment explanation
Indices: 75932533--75932637 Score: 88
Period size: 29 Copynumber: 3.7 Consensus size: 29
75932523 ATAATATGAT
* * * * * *
75932533 TTGGGCCTAATTGGCAATATGAATGTGAA
1 TTGGGCCTAGTGGGCCATAAGAATATAAA
* *
75932562 TTGGGCTTAGTGGGCCATAAGAATATGAA
1 TTGGGCCTAGTGGGCCATAAGAATATAAA
* **
75932591 CTGGGCC-AGATGGGCCATTTGAATA-AAA
1 TTGGGCCTAG-TGGGCCATAAGAATATAAA
75932619 TTGGGCCTAGTGGGCCATA
1 TTGGGCCTAGTGGGCCATA
75932638 TGCATGTATG
Statistics
Matches: 61, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
28 18 0.30
29 43 0.70
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (29 bp):
TTGGGCCTAGTGGGCCATAAGAATATAAA
Found at i:75935059 original size:23 final size:22
Alignment explanation
Indices: 75935010--75935060 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
75935000 ACATGGATGT
*
75935010 ATTATGACAATATAATTGATTG
1 ATTATGACAATATAATTGAGTG
*
75935032 ATTATGCCAATATAATTTGAGTG
1 ATTATGACAATATAA-TTGAGTG
*
75935055 TTTATG
1 ATTATG
75935061 TGTTAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
22 14 0.56
23 11 0.44
ACGTcount: A:0.35, C:0.06, G:0.16, T:0.43
Consensus pattern (22 bp):
ATTATGACAATATAATTGAGTG
Found at i:75949373 original size:138 final size:141
Alignment explanation
Indices: 75949135--75949484 Score: 358
Period size: 138 Copynumber: 2.5 Consensus size: 141
75949125 CATGTCCCAG
* *
75949135 ACATGGTTTTACACTAGCCCTCATATAGTGGCCGACGCCATGTCACAGACATGGTCTTACACTGG
1 ACATGGTCTTACACTGGCCCTCATATAGTGGCCGACGCCATGTCACAGACATGGTCTTACACTGG
* *** * * *
75949200 CTCACAATCAATGTCGATGCAATGTTTGACATGGTCCTACACTGGCTCTCATAATCA-ACGCCGA
66 CTCACAATCAACGTCGATGCAATGTCCAACATGGTCCTACACTAGCTATCATAA-CATA-GCCAA
75949264 TGCCACG-T-ACA
129 TGCCACGTTCACA
** * * *
75949275 ACATGGTCTTACACTGGTTCTCATATGGTGGCCGATGCCATGT-TCA-ACATGGTCTTACACTGG
1 ACATGGTCTTACACTGGCCCTCATATAGTGGCCGACGCCATGTCACAGACATGGTCTTACACTGG
* * *
75949338 CTCACAGTCAACG-CTGATGCCATGTCCAACATGGTCTTACACTAGCTATCATAACATAGCCAAT
66 CTCACAATCAACGTC-GATGCAATGTCCAACATGGTCCTACACTAGCTATCATAACATAGCCAAT
* *
75949402 GCCATGTTCCCA
130 GCCACGTTCACA
* * * * *
75949414 ACATGGTCTTACACTGG-CATACGAAAT-GTGGCCAATGCCATGTC-CAAGACATGGTTTTACAC
1 ACATGGTCTTACACTGGCCCT-C-ATATAGTGGCCGACGCCATGTCAC-AGACATGGTCTTACAC
*
75949476 TAGCTCACA
63 TGGCTCACA
75949485 TGTCACCACA
Statistics
Matches: 176, Mismatches: 25, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
137 13 0.07
138 63 0.36
139 38 0.22
140 41 0.23
141 21 0.12
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (141 bp):
ACATGGTCTTACACTGGCCCTCATATAGTGGCCGACGCCATGTCACAGACATGGTCTTACACTGG
CTCACAATCAACGTCGATGCAATGTCCAACATGGTCCTACACTAGCTATCATAACATAGCCAATG
CCACGTTCACA
Found at i:75949379 original size:91 final size:90
Alignment explanation
Indices: 75949165--75949431 Score: 268
Period size: 91 Copynumber: 2.9 Consensus size: 90
75949155 TCATATAGTG
* * * * **
75949165 GCCGACGCCATGTCACAGACATGGTCTTACACTGGCTCACA-ATCAATGTCGATGCAATGTTTGA
1 GCCGATGCCATGTC-CA-ACATGGTCTTACACTGGCTCTCATAT-AATGCCGATGCCATGTTCAA
* *
75949229 CATGGTCCTACACTGGCTCTCATAATCAAC
63 CATGGTCTTACACTGG--CTCACAATCAAC
* * * **
75949259 GCCGATGCCACGTACAACATGGTCTTACACTGGTTCTCATATGGTGGCCGATGCCATGTTCAACA
1 GCCGATGCCATGTCCAACATGGTCTTACACTGGCTCTCATATAAT-GCCGATGCCATGTTCAACA
*
75949324 TGGTCTTACACTGGCTCACAGTCAAC
65 TGGTCTTACACTGGCTCACAATCAAC
* * * *
75949350 GCTGATGCCATGTCCAACATGGTCTTACACTAGCTATCATA-ACATAGCCAATGCCATGTTCCCA
1 GCCGATGCCATGTCCAACATGGTCTTACACTGGCTCTCATATA-AT-GCCGATGCCATGTT--CA
75949414 ACATGGTCTTACACTGGC
62 ACATGGTCTTACACTGGC
75949432 ATACGAAATG
Statistics
Matches: 144, Mismatches: 24, Indels: 11
0.80 0.13 0.06
Matches are distributed among these distances:
91 59 0.41
92 22 0.15
93 52 0.36
94 11 0.08
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (90 bp):
GCCGATGCCATGTCCAACATGGTCTTACACTGGCTCTCATATAATGCCGATGCCATGTTCAACAT
GGTCTTACACTGGCTCACAATCAAC
Found at i:75949425 original size:48 final size:48
Alignment explanation
Indices: 75949354--75949480 Score: 145
Period size: 48 Copynumber: 2.7 Consensus size: 48
75949344 GTCAACGCTG
75949354 ATGCCATGT-CCAACATGGTCTTACACTAGCTAT-C-ATAACATAGCCA
1 ATGCCATGTCCCAACATGGTCTTACACTAGCTATACGA-AACATAGCCA
* ** *
75949400 ATGCCATGTTCCCAACATGGTCTTACACTGGC-ATACGAAATGTGGCCA
1 ATGCCATG-TCCCAACATGGTCTTACACTAGCTATACGAAACATAGCCA
* *
75949448 ATGCCATGTCCAAGACATGGTTTTACACTAGCT
1 ATGCCATGTCCCA-ACATGGTCTTACACTAGCT
75949481 CACATGTCAC
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
46 8 0.12
47 7 0.10
48 52 0.76
49 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAACATGGTCTTACACTAGCTATACGAAACATAGCCA
Found at i:75954215 original size:75 final size:75
Alignment explanation
Indices: 75954119--75954271 Score: 270
Period size: 75 Copynumber: 2.0 Consensus size: 75
75954109 TAGGCCTTTG
*
75954119 ACACGCCCGTGTCCTCAGGCCATGTAACTCTCTAGCTATGACGTCAGCGAATAATTTGAAACACA
1 ACACGCCCGTGTCCTCAGGCCATGTAACTCTCTAGCTATGACGTCAACGAATAATTTGAAACACA
75954184 TGGCCAAGCC
66 TGGCCAAGCC
* * *
75954194 ACACGCTCGTGTCCTCAGGCCATGTAACTCTCTGGCTATGATGTCAACGAATAATTTGAAACACA
1 ACACGCCCGTGTCCTCAGGCCATGTAACTCTCTAGCTATGACGTCAACGAATAATTTGAAACACA
75954259 TGGCCAAGCC
66 TGGCCAAGCC
75954269 ACA
1 ACA
75954272 TGCCTGTATG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (75 bp):
ACACGCCCGTGTCCTCAGGCCATGTAACTCTCTAGCTATGACGTCAACGAATAATTTGAAACACA
TGGCCAAGCC
Found at i:75956701 original size:40 final size:40
Alignment explanation
Indices: 75956608--75956799 Score: 176
Period size: 40 Copynumber: 4.8 Consensus size: 40
75956598 GGATATAACG
* ** * *
75956608 ACTCGCTCAAATGCCTTCGGGACGAAGCACGG-TTATAGTG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* * *
75956648 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
75956688 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * * *
75956727 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
**
75956767 ACTTATCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
75956800 CATCATTCGA
Statistics
Matches: 123, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 79 0.64
41 11 0.09
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:75956731 original size:79 final size:80
Alignment explanation
Indices: 75956648--75956799 Score: 202
Period size: 79 Copynumber: 1.9 Consensus size: 80
75956638 GGTTATAGTG
* * *
75956648 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAAATGCCTTCGGG-C
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAA-GCCTTCGGGAC
75956710 TTAGCCCGGATTTATTA
64 TTAGCCCGGATTTATTA
** * *
75956727 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTATCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
75956792 AGCCCGGA
66 AGCCCGGA
75956800 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 3 0.05
79 43 0.68
80 17 0.27
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:75960162 original size:49 final size:49
Alignment explanation
Indices: 75960106--75960839 Score: 1130
Period size: 49 Copynumber: 15.4 Consensus size: 49
75960096 TACATATATG
* * * *
75960106 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
75960155 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
75960204 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
75960253 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
75960302 TGTGATGAGGCCTAATGGCCGA--TG-TG-A--TG-AA-TG--TGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
75960341 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
75960390 TGTGATGAGGCCGAATGGCCGATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
75960439 TGTGATGAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
75960488 TGTGATGAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
75960537 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
75960586 TGTGATGAGGCCTAATGGCCGA--TG-TG-A--TG-AA-TG--TGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
75960625 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
75960674 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
75960723 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
75960772 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
75960821 TGTGATAAGGCCTAATGGC
1 TGTGATGAGGCCTAATGGC
75960840 TAATGTAAAA
Statistics
Matches: 639, Mismatches: 26, Indels: 40
0.91 0.04 0.06
Matches are distributed among these distances:
39 56 0.09
41 8 0.01
42 8 0.01
43 6 0.01
45 6 0.01
46 8 0.01
47 8 0.01
49 539 0.84
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:75960623 original size:284 final size:284
Alignment explanation
Indices: 75960106--75960839 Score: 1369
Period size: 284 Copynumber: 2.6 Consensus size: 284
75960096 TACATATATG
* * *
75960106 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATGAGGCCGAATGGCCGATGCGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
75960171 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
66 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
75960236 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTAT
131 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTAT
75960301 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGTATATGTGATGAGGCCTAATGGCCGATGT
196 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGTATATGTGATGAGGCCTAATGGCCGATGT
75960366 GATGAATGTGAAAGTGTATGTATA
261 GATGAATGTGAAAGTGTATGTATA
*
75960390 TGTGATGAGGCCGAATGGCCGATGCGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCGAAT
1 TGTGATGAGGCCGAATGGCCGATGCGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
*
75960455 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCAATGTGGTGAAT
66 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
75960520 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTAT
131 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTAT
75960585 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGTATATGTGATGAGGCCTAATGGCCGATGT
196 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGTATATGTGATGAGGCCTAATGGCCGATGT
75960650 GATGAATGTGAAAGTGTATGTATA
261 GATGAATGTGAAAGTGTATGTATA
* * *
75960674 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGATGAGGCCGAATGGCCGATGCGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
* * *
75960739 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
66 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
75960804 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
131 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
75960840 TAATGTAAAA
Statistics
Matches: 437, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
284 437 1.00
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.29
Consensus pattern (284 bp):
TGTGATGAGGCCGAATGGCCGATGCGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTAT
ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGTATATGTGATGAGGCCTAATGGCCGATGT
GATGAATGTGAAAGTGTATGTATA
Found at i:75960807 original size:235 final size:242
Alignment explanation
Indices: 75960106--75960839 Score: 1124
Period size: 235 Copynumber: 3.1 Consensus size: 242
75960096 TACATATATG
* * * * *
75960106 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATGAGGCCTAATGGCCGA-GTGATGAA-GTGAAAGTG-ATGTATATGTGATGAGGCCTAAT
*
75960171 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
63 GGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
* * *
75960236 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTAT
128 GTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTAT
*
75960301 ATGTGATGAGGCCTAATGGCCGA--T-GTG-A--TG-AA-T-G-TGTATA
193 ATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGGATGTATA
*
75960341 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCGAAT
1 TGTGATGAGGCCTAATGGCCGA-GTGATGAA-GTGAAAGTG-ATGTATATGTGATGAGGCCTAAT
* * *
75960406 GGCCGATGCGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCGAATGGCCGATGTGATGAAT
63 GGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
* *
75960471 GTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTAT
128 GTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTAT
*
75960536 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
193 ATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGGATGTATA
75960586 TGTGATGAGGCCTAATGGCCGA-TG-TG-A-TG-AA-TG-TGTATATGTGATGAGGCCTAATGGC
1 TGTGATGAGGCCTAATGGCCGAGTGATGAAGTGAAAGTGATGTATATGTGATGAGGCCTAATGGC
75960644 CGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTG
66 CGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTG
75960709 AAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATG
131 AAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATG
*
75960774 TGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
196 TGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGGATGTATA
*
75960821 TGTGATAAGGCCTAATGGC
1 TGTGATGAGGCCTAATGGC
75960840 TAATGTAAAA
Statistics
Matches: 463, Mismatches: 26, Indels: 20
0.91 0.05 0.04
Matches are distributed among these distances:
235 414 0.89
237 3 0.01
238 4 0.01
239 3 0.01
241 3 0.01
242 4 0.01
243 3 0.01
244 1 0.00
245 28 0.06
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.29
Consensus pattern (242 bp):
TGTGATGAGGCCTAATGGCCGAGTGATGAAGTGAAAGTGATGTATATGTGATGAGGCCTAATGGC
CGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTG
AAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATG
TGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGGATGTATA
Found at i:75960991 original size:37 final size:37
Alignment explanation
Indices: 75960941--75961025 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
75960931 GGAATATGTT
*
75960941 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
75960978 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
75961015 CCGGGTAAGAC
1 CCGGGTAAGAC
75961026 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:75963160 original size:29 final size:29
Alignment explanation
Indices: 75963118--75963252 Score: 243
Period size: 29 Copynumber: 4.7 Consensus size: 29
75963108 GCGAATGATT
75963118 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
75963147 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
75963176 GAGGCACTATGTGTGCGAGATCGGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
75963205 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
75963234 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
75963253 TTTTTCAACA
Statistics
Matches: 102, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 102 1.00
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.24
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:75963834 original size:40 final size:41
Alignment explanation
Indices: 75963736--75963834 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
75963726 TTCGAATGGT
* ** * *
75963736 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
75963777 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TAACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTAACTA-A
75963818 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
75963835 GGACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.36
41 29 0.58
42 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
Found at i:75965936 original size:49 final size:49
Alignment explanation
Indices: 75965880--75966613 Score: 1096
Period size: 49 Copynumber: 15.4 Consensus size: 49
75965870 TACATATATG
* * * *
75965880 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
75965929 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
75965978 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
75966027 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
75966076 TGTGATGAGGCCTAATGGCCGA--TG-TG-A--TG-AA-TG--TGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
75966115 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* * *
75966164 TGTGATGAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
75966213 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
75966262 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
75966311 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATG-AGTA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTA-TA
75966360 TGTGATGAGGCCTAATGGCCGA--TG-TG-A--TG-AA-TG--TGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
75966399 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTACA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
75966448 TGTGATGAGGCCTAATGGCTGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
75966497 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
75966546 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
75966595 TGTGATAAGGCCTAATGGC
1 TGTGATGAGGCCTAATGGC
75966614 TAATGTAAAA
Statistics
Matches: 631, Mismatches: 32, Indels: 44
0.89 0.05 0.06
Matches are distributed among these distances:
39 54 0.09
40 1 0.00
41 8 0.01
42 8 0.01
43 6 0.01
45 6 0.01
46 8 0.01
47 8 0.01
48 1 0.00
49 531 0.84
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:75966310 original size:235 final size:238
Alignment explanation
Indices: 75965880--75966581 Score: 1079
Period size: 235 Copynumber: 3.0 Consensus size: 238
75965870 TACATATATG
* * * * *
75965880 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
*
75965945 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
66 GGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
* * *
75966010 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTAT
131 GTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTAT
*
75966075 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTG-T-A-TA
196 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGATGAGTA
*
75966115 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCGAAT
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
* * * *
75966180 GGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
*
75966245 GTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTAT
131 GTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTAT
75966310 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGAGTA
196 ATGTGATAAGGCCTAATGGCCGATGTGATGAA--T----GT-GATGAGTA
75966360 TGTGATGAGGCCTAATGGCCGA--TG-TG-A--TG-AA-TG--TGTATATGTGATGAGGCCTAAT
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
* *
75966415 GGCCGATGTGATGAATGTGAAAGTGTATGTACATGTGATGAGGCCTAATGGCTGATGTGGTGAAT
66 GGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
75966480 GTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTAT
131 GTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTAT
*
75966545 ATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGA
196 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
75966582 AAGTGTATGT
Statistics
Matches: 432, Mismatches: 25, Indels: 27
0.89 0.05 0.06
Matches are distributed among these distances:
228 2 0.00
229 2 0.00
233 1 0.00
235 386 0.89
237 3 0.01
238 2 0.00
239 2 0.00
241 3 0.01
242 3 0.01
243 3 0.01
244 1 0.00
245 24 0.06
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.29
Consensus pattern (238 bp):
TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
GTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGATGAGTA
Found at i:75966397 original size:284 final size:284
Alignment explanation
Indices: 75965880--75966613 Score: 1353
Period size: 284 Copynumber: 2.6 Consensus size: 284
75965870 TACATATATG
*
75965880 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATGAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
75965945 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
66 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
75966010 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTAT
131 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTAT
75966075 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGTATATGTGATGAGGCCTAATGGCCGATGT
196 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGTATATGTGATGAGGCCTAATGGCCGATGT
*
75966140 GATGAATGTGAAAGTGTATGTATA
261 GATGAATGTGAAAGTGTATGTACA
75966164 TGTGATGAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATGAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
75966229 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
66 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
75966294 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATG-AG
131 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTA-
75966358 TATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGTATATGTGATGAGGCCTAATGGCCGATG
195 TATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGTATATGTGATGAGGCCTAATGGCCGATG
75966423 TGATGAATGTGAAAGTGTATGTACA
260 TGATGAATGTGAAAGTGTATGTACA
* ** * * *
75966448 TGTGATGAGGCCTAATGGCTGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGATGAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
* * *
75966513 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
66 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
75966578 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
131 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
75966614 TAATGTAAAA
Statistics
Matches: 438, Mismatches: 11, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
283 1 0.00
284 437 1.00
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (284 bp):
TGTGATGAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTAT
ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGTATATGTGATGAGGCCTAATGGCCGATGT
GATGAATGTGAAAGTGTATGTACA
Found at i:75966669 original size:235 final size:234
Alignment explanation
Indices: 75965956--75966686 Score: 878
Period size: 235 Copynumber: 3.1 Consensus size: 234
75965946 GCCGATGTGA
* *
75965956 TGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TGAATGTGAAAGTGTATGTACATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
* * * *
75966021 TGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGG
66 TGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGG
*
75966086 CCTAATGGCCGA--T-GTG-A--TG-AA-TG-TGTATATGTGATGAGGCCTAATGGCCGATGT-G
131 CCTAATGGCCGATGTGGTGAATGTGAAAGTGATGTATATGTGATGAGGCCTAATGGCCGATGTAA
* *
75966141 ATGA-ATGTGAAAGTG-TATGTATATGTGATGAGGCCGAATGGCCAATGC
196 AT-ATATGT----GTGATATG-ATATGTGGTAAGGCCGAAT-G---A-GC
* * *
75966189 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TGAATGTGAAAGTGTATGTACATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
*
75966254 GATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAA
64 TATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAA
*
75966319 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATG-AGTATGTGATGAGGCCTAATGGCCGAT
129 GGCCTAATGGCCGATGTGGTGAATGTGAAAGT-GATGTA-TATGTGATGAGGCCTAATGGCCGAT
* * * *
75966383 GT-GATGA-ATGTGT-ATATG-TGATGAGGCCTAATGGCCG-ATGTGA
192 GTAAAT-ATATGTGTGATATGAT-ATGTGG--TAA-GGCCGAATGAGC
*
75966426 TGAATGTGAAAGTGTATGTACATGTGATGAGGCCTAATGGCTGATGTGGTGAATGTGAAAGTGTA
1 TGAATGTGAAAGTGTATGTACATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
75966491 TGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGG
66 TGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGG
* **
75966556 CCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCTAATGTA
131 CCTAATGGCCGATGTGGTGAATGTGAAAGTG-ATGTATATGTGATGAGGCCTAATGGCCGATGT-
*
75966621 AAATATATGTGTGATATGCATATGTGGTAAAGCCGAATG-GC
194 AAATATATGTGTGATATG-ATATGTGGTAAGGCCGAATGAGC
75966662 T-AATGTG-AA-TGT-TGTAACATGTGAT
1 TGAATGTGAAAGTGTATGT-ACATGTGAT
75966687 TAAATGTACA
Statistics
Matches: 443, Mismatches: 27, Indels: 54
0.85 0.05 0.10
Matches are distributed among these distances:
232 3 0.01
233 12 0.03
234 3 0.01
235 321 0.72
236 8 0.02
237 16 0.04
238 7 0.02
239 7 0.02
240 5 0.01
241 9 0.02
242 6 0.01
243 6 0.01
244 2 0.00
245 38 0.09
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.30
Consensus pattern (234 bp):
TGAATGTGAAAGTGTATGTACATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
TGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGG
CCTAATGGCCGATGTGGTGAATGTGAAAGTGATGTATATGTGATGAGGCCTAATGGCCGATGTAA
ATATATGTGTGATATGATATGTGGTAAGGCCGAATGAGC
Found at i:75966772 original size:37 final size:37
Alignment explanation
Indices: 75966717--75966799 Score: 139
Period size: 37 Copynumber: 2.2 Consensus size: 37
75966707 AATATGTTCA
*
75966717 GGGTGAGACCCGATGACTACGTGTGGAGATTATGACC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGACC
* *
75966754 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGACC
75966791 GGGTAAGAC
1 GGGTAAGAC
75966800 TTCTTTTATA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.25, C:0.17, G:0.35, T:0.23
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGACC
Found at i:75973461 original size:77 final size:82
Alignment explanation
Indices: 75973345--75973527 Score: 220
Period size: 77 Copynumber: 2.3 Consensus size: 82
75973335 ACGACTCGCT
** * * *
75973345 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTTGGGA-CTTA-ACC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCC-TTCGGATCCTAGACC
* *
75973407 GGGTTTAGT-ACTT-GCA
65 GGATATAGTCACTTAGCA
* *
75973423 CAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCCTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAGACCG
75973486 GATATAGTCACTTAGCA
66 GATATAGTCACTTAGCA
75973503 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75973528 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
76 5 0.06
77 29 0.32
78 25 0.28
79 13 0.14
80 18 0.20
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAGACCG
GATATAGTCACTTAGCA
Found at i:75973527 original size:40 final size:38
Alignment explanation
Indices: 75973338--75973527 Score: 134
Period size: 40 Copynumber: 4.8 Consensus size: 38
75973328 GGATATAACG
* ** *
75973338 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGT
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGT
* * * * *
75973377 GACTCGCACGAATGCCTTTGGGACTTA-ACCGGGTTTAGT
1 -ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGT
* * *
75973416 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATT
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGT
* * *
75973454 AACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGT
1 -ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGT
*
75973494 CACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 -AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
75973528 CATCATTCGA
Statistics
Matches: 116, Mismatches: 25, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
37 6 0.05
38 26 0.22
39 22 0.19
40 52 0.45
41 10 0.09
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (38 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGT
Found at i:75975193 original size:48 final size:48
Alignment explanation
Indices: 75975122--75975404 Score: 222
Period size: 48 Copynumber: 5.9 Consensus size: 48
75975112 TGAATTGTCA
* * *
75975122 ATGCCATGTCTCAGACATGGTCTTACACTAGCTCACATGTTGAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAGGCCG
* * * * *
75975170 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAGGCCG
* * * * * *
75975218 AGGCCATGT-CCA-ACGTGGTCTTACATTGGCTCTCATATGGTGGCCGACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG--CTCACAT-GT---CGAGGCCG
* * ** *
75975270 ATGCCATGT-CCA-ACATGGTCTTACACTGGCTCTCATAAC-ATGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGA-GGCCG
* * *
75975316 ATGCCATGTTCCAAACATGGTCTTACACTAGCATACAAAATGT---GGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC-T-C-ACATGTCGAGGCCG
75975364 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTC
75975405 ACCCAAAATG
Statistics
Matches: 186, Mismatches: 36, Indels: 28
0.74 0.14 0.11
Matches are distributed among these distances:
45 6 0.03
46 28 0.15
47 7 0.04
48 103 0.55
49 2 0.01
50 6 0.03
51 2 0.01
52 32 0.17
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAGGCCG
Found at i:75992886 original size:39 final size:39
Alignment explanation
Indices: 75992830--75993123 Score: 471
Period size: 39 Copynumber: 7.5 Consensus size: 39
75992820 ACAAAGCATG
75992830 CGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAATACCAGCACGAATGCCTT
*
75992871 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
**
75992910 CGGGACTTAGCCCGGATATAGCACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
75992949 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
* * **
75992988 CAGGAATTAGCCCGGATATAGCACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
*
75993027 CGGGACTTAGCCCGGTTATAATACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
* * *
75993066 CAGGACTTAGCCCGGATATAATACTAGCACGAATACCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
75993105 CGGGACTTAGCCCGGATAT
1 CGGGACTTAGCCCGGATAT
75993124 TTTCCAGCAC
Statistics
Matches: 235, Mismatches: 18, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 227 0.97
40 2 0.01
41 6 0.03
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
Found at i:75993171 original size:39 final size:39
Alignment explanation
Indices: 75993119--75993204 Score: 122
Period size: 39 Copynumber: 2.2 Consensus size: 39
75993109 ACTTAGCCCG
* *
75993119 GATAT-TTTCCAGCACT-TAGCCTGCGGACTTTAAGTCCA
1 GATATATTTCCAGCA-TAAAGCCTGCGGACTTCAAGTCCA
*
75993157 GATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCCG
1 GATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCCA
75993196 GATATATTT
1 GATATATTT
75993205 TTCCAATACC
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
38 6 0.14
39 37 0.86
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (39 bp):
GATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCCA
Found at i:76009336 original size:78 final size:81
Alignment explanation
Indices: 76009216--76009397 Score: 248
Period size: 78 Copynumber: 2.3 Consensus size: 81
76009206 TACTCGTTCA
* *
76009216 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
76009279 ATTTAGTAAC-TCGCAC
65 ATATAGTAACTTAGCAC
**
76009295 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
76009358 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
76009374 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
76009398 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
77 3 0.03
78 48 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:76009397 original size:40 final size:40
Alignment explanation
Indices: 76009195--76009397 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
76009185 CGGAATTTAA
** *
76009195 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
76009235 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
76009275 CCGGATTTAGTAACTCGCAC-AATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
76009313 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
76009353 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
76009393 CCGGA
1 CCGGA
76009398 CATCATTCGA
Statistics
Matches: 142, Mismatches: 13, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
38 25 0.18
39 22 0.15
40 83 0.58
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:76017488 original size:116 final size:119
Alignment explanation
Indices: 76017283--76017504 Score: 303
Period size: 116 Copynumber: 1.9 Consensus size: 119
76017273 GCTACTCGTT
76017283 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
76017348 ATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
65 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * **
76017402 CAAATGCCTTC-GGATCTTAGTCCGG-ATAGT-ACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGA-CATAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
*
76017463 GATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 GATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCCCGGA
76017505 CATCATTCGA
Statistics
Matches: 92, Mismatches: 7, Indels: 10
0.84 0.06 0.09
Matches are distributed among these distances:
115 3 0.03
116 43 0.47
117 24 0.26
118 3 0.03
119 19 0.21
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:76017504 original size:40 final size:40
Alignment explanation
Indices: 76017264--76017504 Score: 284
Period size: 40 Copynumber: 6.1 Consensus size: 40
76017254 TCGAATTTAA
** *
76017264 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
76017304 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
76017344 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
76017383 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
*
76017423 CCGG--ATAGT-ACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
76017460 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
76017500 CCGGA
1 CCGGA
76017505 CATCATTCGA
Statistics
Matches: 180, Mismatches: 12, Indels: 18
0.86 0.06 0.09
Matches are distributed among these distances:
37 32 0.18
38 6 0.03
39 40 0.22
40 91 0.51
41 11 0.06
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:76022089 original size:40 final size:40
Alignment explanation
Indices: 76022040--76022207 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
76022030 TCTTCGGAAT
* * * *
76022040 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGCTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
76022079 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
76022119 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
76022159 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
76022199 TTAGCCCGG
1 TTAGCCCGG
76022208 GTATCATTCA
Statistics
Matches: 106, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 3 0.03
40 102 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:76023089 original size:2 final size:2
Alignment explanation
Indices: 76023082--76023109 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
76023072 ATGTGCAAAC
76023082 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76023110 GCTAGAGCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76028381 original size:34 final size:34
Alignment explanation
Indices: 76028338--76028427 Score: 110
Period size: 35 Copynumber: 2.6 Consensus size: 34
76028328 AGCTTGTCTG
76028338 ACTAGTGCTGGGCACACAATTGTCGGTTTATCCA
1 ACTAGTGCTGGGCACACAATTGTCGGTTTATCCA
* *
76028372 ACTAGTGCTGGGCACA-ATTATCGTTGGTTTATCCA
1 ACTAGTGCTGGGCACACA--ATTGTCGGTTTATCCA
* * *
76028407 ACTAGAGCTGAGCTCACAATT
1 ACTAGTGCTGGGCACACAATT
76028428 ATTATCATCG
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
33 1 0.02
34 18 0.38
35 27 0.57
36 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (34 bp):
ACTAGTGCTGGGCACACAATTGTCGGTTTATCCA
Found at i:76028445 original size:40 final size:40
Alignment explanation
Indices: 76028401--76028526 Score: 106
Period size: 40 Copynumber: 3.3 Consensus size: 40
76028391 ATCGTTGGTT
76028401 TATCCAACTAGAGCTGAGCTCACAATTATTATCATCGGTA
1 TATCCAACTAGAGCTGAGCTCACAATTATTATCATCGGTA
* * * * * *
76028441 TATCCTACTAGCAG-TG-GGT-GCAA--A-TATCGTTGGTT
1 TATCCAACTAG-AGCTGAGCTCACAATTATTATCATCGGTA
*
76028476 TATCCATCTAGAGCT-AGGCTCACAATTATTAT-AGTCGGTA
1 TATCCAACTAGAGCTGA-GCTCACAATTATTATCA-TCGGTA
76028516 TATCCAACTAG
1 TATCCAACTAG
76028527 CACTGGTTGC
Statistics
Matches: 63, Mismatches: 14, Indels: 18
0.66 0.15 0.19
Matches are distributed among these distances:
34 2 0.03
35 18 0.29
36 3 0.05
37 3 0.05
38 3 0.05
39 3 0.05
40 29 0.46
41 2 0.03
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (40 bp):
TATCCAACTAGAGCTGAGCTCACAATTATTATCATCGGTA
Found at i:76028469 original size:75 final size:75
Alignment explanation
Indices: 76028359--76028563 Score: 270
Period size: 75 Copynumber: 2.7 Consensus size: 75
76028349 GCACACAATT
* ** ** *
76028359 GTCGGTTTATCCAACTAGTGCTGGGCACAATTATCGTTGGTTTATCCAACTAGAGCT-GAGCTCA
1 GTCGGTATATCCAACTAGCACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTAG-GCTCA
76028423 CAATTATTATCA
65 CAATTATTAT-A
* * *
76028435 -TCGGTATATCCTACTAGCAGTGGGTGCAAATATCGTTGGTTTATCCATCTAGAGCTAGGCTCAC
1 GTCGGTATATCCAACTAGCACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTAGGCTCAC
76028499 AATTATTATA
66 AATTATTATA
* * *
76028509 GTCGGTATATCCAACTAGCACTGGTTGCAAAAATTGTTGGTTTATCCAACTAGAG
1 GTCGGTATATCCAACTAGCACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAG
76028564 TTGGGCTCGC
Statistics
Matches: 112, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
74 1 0.01
75 110 0.98
76 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (75 bp):
GTCGGTATATCCAACTAGCACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTAGGCTCAC
AATTATTATA
Found at i:76033272 original size:16 final size:16
Alignment explanation
Indices: 76033239--76033272 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
76033229 AATTCTAACA
*
76033239 TGAGAAATAAATGAAT
1 TGAGAAATAAAAGAAT
*
76033255 TGAGAAATAAAAGCAT
1 TGAGAAATAAAAGAAT
76033271 TG
1 TG
76033273 CTTTAGCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.21, T:0.24
Consensus pattern (16 bp):
TGAGAAATAAAAGAAT
Found at i:76034713 original size:75 final size:75
Alignment explanation
Indices: 76034626--76034818 Score: 305
Period size: 75 Copynumber: 2.6 Consensus size: 75
76034616 ACTAGAATTG
* * *
76034626 GGTGCAATTATCGTTGGTTTATCCAACTAGAGCTGAGCTCACAATTATTATCGTCGGTATATTCG
1 GGTGCAAATATCGTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCGTCGGTATATCCG
76034691 ACTAGCACTA
66 ACTAGCACTA
*
76034701 GGTGCAAATATCGTTGGTTTATCCCACTAGAGCTGGGCTCACAATTATTATCGTCGGTATATCCG
1 GGTGCAAATATCGTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCGTCGGTATATCCG
* *
76034766 TCTAGCACTG
66 ACTAGCACTA
* * *
76034776 GGTGCAAATATTGTTGGGTTATCCAACTAGAGTTGGGCTCACA
1 GGTGCAAATATCGTTGGTTTATCCAACTAGAGCTGGGCTCACA
76034819 TTTAATACTG
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 108 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (75 bp):
GGTGCAAATATCGTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCGTCGGTATATCCG
ACTAGCACTA
Found at i:76034777 original size:40 final size:40
Alignment explanation
Indices: 76034632--76034777 Score: 126
Period size: 40 Copynumber: 3.8 Consensus size: 40
76034622 ATTGGGTGCA
* * * *
76034632 ATTATCGTTGGTTTATCCAACTAG-AGCTGAGCTCACAATT
1 ATTATCGTCGGTATATCCGACTAGCA-CTGGGCTCACAATT
* * *
76034672 ATTATCGTCGGTATATTCGACTAGCACTAGG-T-GCAA--
1 ATTATCGTCGGTATATCCGACTAGCACTGGGCTCACAATT
* * *
76034708 A-TATCGTTGGTTTATCCCACTAG-AGCTGGGCTCACAATT
1 ATTATCGTCGGTATATCCGACTAGCA-CTGGGCTCACAATT
*
76034747 ATTATCGTCGGTATATCCGTCTAGCACTGGG
1 ATTATCGTCGGTATATCCGACTAGCACTGGG
76034778 TGCAAATATT
Statistics
Matches: 81, Mismatches: 17, Indels: 16
0.71 0.15 0.14
Matches are distributed among these distances:
34 1 0.01
35 22 0.27
36 2 0.02
37 3 0.04
38 3 0.04
39 2 0.02
40 46 0.57
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (40 bp):
ATTATCGTCGGTATATCCGACTAGCACTGGGCTCACAATT
Found at i:76034852 original size:75 final size:74
Alignment explanation
Indices: 76034606--76034857 Score: 283
Period size: 75 Copynumber: 3.4 Consensus size: 74
76034596 CACAATTGTG
* * * * *
76034606 GGTTTATCTGACTAGAATTGGGTGCAATTATCGTTGGTTTATCCAACTAGAGCTGAGCTCACAAT
1 GGTTAATC-GACTAGCACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTGGGCTCACAAT
76034671 TATTATCGTC
65 TATTATCGTC
* * *
76034681 GGTATATTCGACTAGCACTAGGTGCAAATATCGTTGGTTTATCCCACTAGAGCTGGGCTCACAAT
1 GGT-TAATCGACTAGCACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTGGGCTCACAAT
76034746 TATTATCGTC
65 TATTATCGTC
* * * * *
76034756 GG-TATATCCGTCTAGCACTGGGTGCAAATATTGTTGGGTTATCCAACTAGAGTTGGGCTCACAT
1 GGTTA-AT-CGACTAGCACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTGGGCTCACAA
* *
76034820 TTAATA-CTGCC
64 TTATTATC-GTC
**
76034831 GGTTAATCAGACTAGTGCTGGGTGCAA
1 GGTTAATC-GACTAGCACTGGGTGCAA
76034858 CCTTTTCTGT
Statistics
Matches: 150, Mismatches: 21, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
73 2 0.01
74 3 0.02
75 140 0.93
76 5 0.03
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (74 bp):
GGTTAATCGACTAGCACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGCTGGGCTCACAATT
ATTATCGTC
Found at i:76036873 original size:57 final size:57
Alignment explanation
Indices: 76036755--76036892 Score: 161
Period size: 57 Copynumber: 2.4 Consensus size: 57
76036745 TATAGTTAGG
* * * *
76036755 ATTTAGCCTGGACTGGTAATCCTAATTGAGCTCTTCTGAGAATATGTTATAGAACAT
1 ATTTAGCCTGGACTGGTAATCCTAATTAAACTCTTCTGAGAATATGTTAGAGAACAA
* * * ** *
76036812 ATTTAGCTTGGATTGGTAATCCTAATTAAACTCTTGTGATCATATGTTGGAG-ACAGA
1 ATTTAGCCTGGACTGGTAATCCTAATTAAACTCTTCTGAGAATATGTTAGAGAACA-A
*
76036869 ATTTAGCCTGAACTGGTAATCCTA
1 ATTTAGCCTGGACTGGTAATCCTA
76036893 TTATATGATA
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
56 3 0.04
57 64 0.96
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.36
Consensus pattern (57 bp):
ATTTAGCCTGGACTGGTAATCCTAATTAAACTCTTCTGAGAATATGTTAGAGAACAA
Found at i:76039107 original size:17 final size:18
Alignment explanation
Indices: 76039085--76039123 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
76039075 TACAAAAAAC
*
76039085 AAAAAC-CTTAAACCCTA
1 AAAAACTCTAAAACCCTA
76039102 AAAAACTCTAAAACCCTA
1 AAAAACTCTAAAACCCTA
76039120 AAAA
1 AAAA
76039124 TAGTTGAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.59, C:0.26, G:0.00, T:0.15
Consensus pattern (18 bp):
AAAAACTCTAAAACCCTA
Found at i:76039502 original size:18 final size:18
Alignment explanation
Indices: 76039479--76039513 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
76039469 TAGCAAATAA
*
76039479 TTTAAAATTTAAAATATT
1 TTTAAAATTAAAAATATT
76039497 TTTAAAATTAAAAATAT
1 TTTAAAATTAAAAATAT
76039514 CATAAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TTTAAAATTAAAAATATT
Found at i:76040696 original size:13 final size:13
Alignment explanation
Indices: 76040678--76040738 Score: 77
Period size: 13 Copynumber: 4.7 Consensus size: 13
76040668 GTTAAATTTT
76040678 TCAAAAGCACTTC
1 TCAAAAGCACTTC
*
76040691 TCAAAAGCACTTT
1 TCAAAAGCACTTC
* * *
76040704 TCTACAGCACTTT
1 TCAAAAGCACTTC
76040717 TCAAAAGCACTTC
1 TCAAAAGCACTTC
*
76040730 TTAAAAGCA
1 TCAAAAGCA
76040739 TTGCCAAAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 41 1.00
ACGTcount: A:0.38, C:0.26, G:0.08, T:0.28
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:76040738 original size:26 final size:26
Alignment explanation
Indices: 76040675--76040738 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
76040665 ACAGTTAAAT
76040675 TTTTCAAAAGCACTTCTCAAAAGCAC
1 TTTTCAAAAGCACTTCTCAAAAGCAC
* * *
76040701 TTTTCTACAGCACTTTTCAAAAGCAC
1 TTTTCAAAAGCACTTCTCAAAAGCAC
76040727 TTCTT-AAAAGCA
1 TT-TTCAAAAGCA
76040739 TTGCCAAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 30 0.94
27 2 0.06
ACGTcount: A:0.36, C:0.25, G:0.08, T:0.31
Consensus pattern (26 bp):
TTTTCAAAAGCACTTCTCAAAAGCAC
Found at i:76041185 original size:14 final size:14
Alignment explanation
Indices: 76041149--76041187 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
76041139 TTATTTAACT
* *
76041149 GAAAATGACTTCTG
1 GAAAATGATTTCTA
76041163 GAAAATGATTTCTA
1 GAAAATGATTTCTA
76041177 GAAAATGATTT
1 GAAAATGATTT
76041188 ACTTTTCTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (14 bp):
GAAAATGATTTCTA
Found at i:76041663 original size:15 final size:15
Alignment explanation
Indices: 76041643--76041694 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
76041633 ACTACAAAAC
76041643 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
76041658 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
76041677 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
76041692 ATT
1 ATT
76041695 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:76041812 original size:22 final size:21
Alignment explanation
Indices: 76041768--76041822 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
76041758 TTAAAATAAA
*
76041768 ATTAAAAT-ATTAAATAATTT
1 ATTAAAATAATAAAATAATTT
76041788 ATTAAAATAATAAAATATATTT
1 ATTAAAATAATAAAATA-ATTT
* *
76041810 ATTATATTAATAA
1 ATTAAAATAATAA
76041823 TTTATTATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 8 0.27
21 7 0.23
22 15 0.50
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
ATTAAAATAATAAAATAATTT
Found at i:76041827 original size:16 final size:17
Alignment explanation
Indices: 76041801--76041832 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
76041791 AAAATAATAA
76041801 AATATATTTATTATATT
1 AATATATTTATTATATT
76041818 AATA-ATTTATTATAT
1 AATATATTTATTATAT
76041833 GACTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
AATATATTTATTATATT
Found at i:76048501 original size:30 final size:30
Alignment explanation
Indices: 76048467--76048527 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
76048457 CCGTAATTTT
76048467 TTCCCGAAAGGGTTTTCACGTAAAAATCTA
1 TTCCCGAAAGGGTTTTCACGTAAAAATCTA
*
76048497 TTCCCTAAAGGGTTTTCACGTAAAAATCTA
1 TTCCCGAAAGGGTTTTCACGTAAAAATCTA
76048527 T
1 T
76048528 GTGTTCTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (30 bp):
TTCCCGAAAGGGTTTTCACGTAAAAATCTA
Found at i:76053397 original size:28 final size:28
Alignment explanation
Indices: 76053365--76053434 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
76053355 TATGGTACTC
*
76053365 AGTGTACGAAATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
76053393 AGTGTGCGAGATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
76053421 AGTGTGCAAAATAT
1 AGTGTGCGAAATAT
76053435 CGAATGATTC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATGACACTT
Found at i:76061614 original size:2 final size:2
Alignment explanation
Indices: 76061609--76061638 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
76061599 TCTTTAGATA
76061609 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76061639 CATTTTAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76068821 original size:22 final size:22
Alignment explanation
Indices: 76068796--76068856 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
76068786 TTTTTATTTC
* *
76068796 ATTTTATTTTAATTTATTTTAA
1 ATTTTATTTTAATTAATTATAA
76068818 ATTTT-TATTTAA-TAATTATAA
1 ATTTTAT-TTTAATTAATTATAA
*
76068839 ATATATATTTTAATTAAT
1 AT-TTTATTTTAATTAAT
76068857 AATTTTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
21 10 0.31
22 17 0.53
23 5 0.16
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
ATTTTATTTTAATTAATTATAA
Found at i:76073681 original size:30 final size:30
Alignment explanation
Indices: 76073640--76073699 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
76073630 TTTTACTTTA
* *
76073640 ATTTGATCAATTTTAGTCCCTATATTTTTT
1 ATTTGACCAATTCTAGTCCCTATATTTTTT
* *
76073670 ATTTGACCAATTCTAGTCCTTGTATTTTTT
1 ATTTGACCAATTCTAGTCCCTATATTTTTT
76073700 GAATTTTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.22, C:0.15, G:0.08, T:0.55
Consensus pattern (30 bp):
ATTTGACCAATTCTAGTCCCTATATTTTTT
Found at i:76075259 original size:2 final size:2
Alignment explanation
Indices: 76075252--76075287 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
76075242 CTCTAATGCC
76075252 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76075288 GGGCTTACAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76076967 original size:40 final size:40
Alignment explanation
Indices: 76076922--76077005 Score: 168
Period size: 40 Copynumber: 2.1 Consensus size: 40
76076912 AAAATACATG
76076922 GACTAATAGCATAATTTAAACTATATTTTACGATTTACAA
1 GACTAATAGCATAATTTAAACTATATTTTACGATTTACAA
76076962 GACTAATAGCATAATTTAAACTATATTTTACGATTTACAA
1 GACTAATAGCATAATTTAAACTATATTTTACGATTTACAA
76077002 GACT
1 GACT
76077006 TGTCATATTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37
Consensus pattern (40 bp):
GACTAATAGCATAATTTAAACTATATTTTACGATTTACAA
Found at i:76085975 original size:5 final size:5
Alignment explanation
Indices: 76085965--76085996 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
76085955 GCTATTCATA
*
76085965 AAAAT AAAAT AAAAT AAAAT AAAAT GAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AA
76085997 GATATTAGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:76086818 original size:15 final size:15
Alignment explanation
Indices: 76086800--76086844 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
76086790 TTTTTCTCTT
76086800 TATTATATATTATAA
1 TATTATATATTATAA
*
76086815 TATTA-ATTATTAAAA
1 TATTATA-TATTATAA
76086830 TATTAT-TATT-TAA
1 TATTATATATTATAA
76086843 TA
1 TA
76086845 AAAAAGGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 4 0.15
14 5 0.19
15 17 0.65
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATTATATATTATAA
Found at i:76087134 original size:25 final size:24
Alignment explanation
Indices: 76087088--76087134 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
76087078 TTTTAAGCAA
76087088 TTTAATCTTTTTCTTTTATGTTCT
1 TTTAATCTTTTTCTTTTATGTTCT
76087112 TTTAACTCTATTTT-TTTTATGTT
1 TTTAA-TCT-TTTTCTTTTATGTT
76087135 TTCCATTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 5 0.24
25 12 0.57
26 4 0.19
ACGTcount: A:0.15, C:0.11, G:0.04, T:0.70
Consensus pattern (24 bp):
TTTAATCTTTTTCTTTTATGTTCT
Found at i:76087323 original size:22 final size:24
Alignment explanation
Indices: 76087298--76087346 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
76087288 AAGAGAATGG
*
76087298 AAAATAA-AGAAAA-AAAAAAGTT
1 AAAATAACAGAAAAGAAAAAAATT
*
76087320 AAAATAACATAAAAGAAAAAAATT
1 AAAATAACAGAAAAGAAAAAAATT
76087344 AAA
1 AAA
76087347 TTGCTCAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 7 0.30
23 5 0.22
24 11 0.48
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (24 bp):
AAAATAACAGAAAAGAAAAAAATT
Found at i:76090675 original size:2 final size:2
Alignment explanation
Indices: 76090668--76090695 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
76090658 TCCTTTCTAC
76090668 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76090696 TATTAAACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76091567 original size:26 final size:25
Alignment explanation
Indices: 76091538--76091842 Score: 192
Period size: 26 Copynumber: 12.2 Consensus size: 25
76091528 CATATTACAC
*
76091538 ATATATATATTAATATTATATTATGT
1 ATATAT-TTTTAATATTATATTATGT
*
76091564 ATATATTTTTAATATCATATTAT-T
1 ATATATTTTTAATATTATATTATGT
76091588 CATATA--TTT--TATTATATTATGT
1 -ATATATTTTTAATATTATATTATGT
*
76091610 ATATATTTTTAATAACTATATTATGT
1 ATATATTTTTAAT-ATTATATTATGT
* * *
76091636 ATGTATTTTTAACACTATATT-TCGT
1 ATATATTTTTAATATTATATTAT-GT
* * *
76091661 ACATACTTTTAATATCATTATTATGT
1 ATATATTTTTAATATTA-TATTATGT
76091687 ATATATTTTTAATA-TATA-TATGT
1 ATATATTTTTAATATTATATTATGT
* * *
76091710 GTATATTTATGTAGTATTAT-TAATAGT
1 ATATATTT-T-TAATATTATATTAT-GT
* *
76091737 -TGTTTTTTCTAATATGTATATATTATGT
1 ATATATTTT-TAATA--T-TATATTATGT
*
76091765 ATATATTTTT-A-A-T-T-CTATGT
1 ATATATTTTTAATATTATATTATGT
*
76091785 ATATACTTTTTAATACTATTATTATGT
1 ATATA-TTTTTAATATTA-TATTATGT
* *
76091812 TTATA-TTTTAATATATATACGTATGT
1 ATATATTTTTAATAT-TATA-TTATGT
76091838 ATATA
1 ATATA
76091843 GGTAACATTA
Statistics
Matches: 219, Mismatches: 31, Indels: 58
0.71 0.10 0.19
Matches are distributed among these distances:
20 10 0.05
21 21 0.10
22 3 0.01
23 19 0.09
24 6 0.03
25 62 0.28
26 69 0.32
27 14 0.06
28 6 0.03
29 9 0.04
ACGTcount: A:0.34, C:0.05, G:0.06, T:0.55
Consensus pattern (25 bp):
ATATATTTTTAATATTATATTATGT
Found at i:76091583 original size:25 final size:25
Alignment explanation
Indices: 76091538--76091829 Score: 174
Period size: 25 Copynumber: 11.8 Consensus size: 25
76091528 CATATTACAC
* *
76091538 ATATATATATTAATATTATATTATGT
1 ATATAT-TTTTAATATCATATTATGT
76091564 ATATATTTTTAATATCATATTAT-T
1 ATATATTTTTAATATCATATTATGT
76091588 CATATA-TTTT-AT-T-ATATTATGT
1 -ATATATTTTTAATATCATATTATGT
*
76091610 ATATATTTTTAATAACTATATTATGT
1 ATATATTTTTAATATC-ATATTATGT
* *
76091636 ATGTATTTTTAACA-CTATATT-TCGT
1 ATATATTTTTAATATC-ATATTAT-GT
* *
76091661 ACATACTTTTAATATCATTATTATGT
1 ATATATTTTTAATATCA-TATTATGT
76091687 ATATATTTTTAATAT-ATA-TATGT
1 ATATATTTTTAATATCATATTATGT
* *
76091710 GTATATTTATGTAGTAT--TATTAATAGT
1 ATATATTT-T-TAATATCATATT-AT-GT
* * *
76091737 -TGTTTTTTCTAATATGTATATATTATGT
1 ATATATTTT-TAATA--T-CATATTATGT
76091765 ATATATTTTTAAT-TC----TATGT
1 ATATATTTTTAATATCATATTATGT
76091785 ATATACTTTTTAATA-CTATTATTATGT
1 ATATA-TTTTTAATATC-A-TATTATGT
*
76091812 TTATA-TTTTAATAT-ATAT
1 ATATATTTTTAATATCATAT
76091830 ACGTATGTAT
Statistics
Matches: 214, Mismatches: 21, Indels: 65
0.71 0.07 0.22
Matches are distributed among these distances:
20 10 0.05
21 21 0.10
22 6 0.03
23 19 0.09
24 12 0.06
25 61 0.29
26 54 0.25
27 13 0.06
28 6 0.03
29 8 0.04
30 4 0.02
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.56
Consensus pattern (25 bp):
ATATATTTTTAATATCATATTATGT
Found at i:76091616 original size:16 final size:15
Alignment explanation
Indices: 76091550--76091633 Score: 50
Period size: 16 Copynumber: 5.5 Consensus size: 15
76091540 ATATATATTA
*
76091550 ATATTATATTATGTAT
1 ATATTAT-TTATATAT
76091566 ATATT-TTTA-ATAT
1 ATATTATTTATATAT
*
76091579 CATATTATTCATATATT
1 -ATATTATTTATATA-T
* *
76091596 TTATTATATTATGTAT
1 ATATTAT-TTATATAT
76091612 ATATT-TTTA-ATAACT
1 ATATTATTTATAT-A-T
76091627 ATATTAT
1 ATATTAT
76091634 GTATGTATTT
Statistics
Matches: 53, Mismatches: 7, Indels: 16
0.70 0.09 0.21
Matches are distributed among these distances:
13 4 0.08
14 12 0.23
15 11 0.21
16 20 0.38
17 6 0.11
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (15 bp):
ATATTATTTATATAT
Found at i:76091785 original size:20 final size:21
Alignment explanation
Indices: 76091760--76091803 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
76091750 ATGTATATAT
*
76091760 TATGTATATA-TTTTTAATTC
1 TATGTATATACTTTTTAATAC
76091780 TATGTATATACTTTTTAATAC
1 TATGTATATACTTTTTAATAC
76091801 TAT
1 TAT
76091804 TATTATGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.57
Consensus pattern (21 bp):
TATGTATATACTTTTTAATAC
Found at i:76104280 original size:40 final size:40
Alignment explanation
Indices: 76104206--76104423 Score: 336
Period size: 40 Copynumber: 5.5 Consensus size: 40
76104196 AACCCAAGTA
* *
76104206 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
76104245 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
76104285 CCTTTGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
76104325 CCTTCGAGACTTAGCCCGGATATA-TCACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
76104364 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
76104404 CCTTCGGGACTTAG-CCGGAT
1 CCTTCGGGACTTAGCCCGGAT
76104424 GTCATCCGAA
Statistics
Matches: 167, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 55 0.33
40 111 0.66
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:76104373 original size:79 final size:80
Alignment explanation
Indices: 76104206--76104423 Score: 336
Period size: 79 Copynumber: 2.8 Consensus size: 80
76104196 AACCCAAGTA
* *
76104206 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
76104269 GTCACTAGCACAAATG
65 GTCACTAGCACAAATG
* *
76104285 CCTTTGGGACTTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGAGACTTAGCCCGGATATA-
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
76104349 TCACTAGCACAACTG
66 TCACTAGCACAAATG
* *
76104364 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAACTGCCTTCGGGACTTAG-CCGGAT
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCCGGAT
76104424 GTCATCCGAA
Statistics
Matches: 128, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
78 6 0.05
79 76 0.59
80 43 0.34
81 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:76104417 original size:119 final size:118
Alignment explanation
Indices: 76104206--76104423 Score: 348
Period size: 119 Copynumber: 1.8 Consensus size: 118
76104196 AACCCAAGTA
* * *
76104206 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGAGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
76104271 CACTAGCACAAATGCCTTTGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
66 CACTAGCACAAATGCCTTCGGGACTTAG-CCGGATATAGTCAATAGCACAAATG
* *
76104325 CCTTCGAGACTTAGCCCGGATATATC-ACTAGCACAACTGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGAGACTTAG-CCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
76104389 TCACTAGCACAACTGCCTTCGGGACTTAGCCGGAT
65 TCACTAGCACAAATGCCTTCGGGACTTAGCCGGAT
76104424 GTCATCCGAA
Statistics
Matches: 91, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
118 6 0.07
119 75 0.82
120 10 0.11
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (118 bp):
CCTTCGAGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGCCTTCGGGACTTAGCCGGATATAGTCAATAGCACAAATG
Found at i:76107290 original size:19 final size:19
Alignment explanation
Indices: 76107266--76107308 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
76107256 CATCTCAACA
76107266 TATCCTCGAGTATCTGAAT
1 TATCCTCGAGTATCTGAAT
76107285 TATCCTCGAGTATCTGAAT
1 TATCCTCGAGTATCTGAAT
76107304 TATCC
1 TATCC
76107309 GCTCGTATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (19 bp):
TATCCTCGAGTATCTGAAT
Found at i:76112872 original size:39 final size:40
Alignment explanation
Indices: 76112703--76112880 Score: 283
Period size: 40 Copynumber: 4.5 Consensus size: 40
76112693 AACCCAAGTA
* *
76112703 CCTTC-GGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
76112741 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
76112781 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
76112821 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
76112860 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
76112881 GTCATCCGAA
Statistics
Matches: 132, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
38 5 0.04
39 31 0.23
40 95 0.72
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:76117856 original size:31 final size:30
Alignment explanation
Indices: 76117798--76117857 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 30
76117788 GGCCTATTTC
** *
76117798 CCTAATTAAAATTAAAAATCGATCTAAAGT
1 CCTAATTAAAAAAAAAAATCGACCTAAAGT
*
76117828 CCTAATTAAAAAAATAAAATTGACCTAAAG
1 CCTAATTAAAAAAA-AAAATCGACCTAAAG
76117858 GCCTTATTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 12 0.48
31 13 0.52
ACGTcount: A:0.53, C:0.13, G:0.07, T:0.27
Consensus pattern (30 bp):
CCTAATTAAAAAAAAAAATCGACCTAAAGT
Found at i:76118244 original size:17 final size:16
Alignment explanation
Indices: 76118222--76118268 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
76118212 GAATTCACCA
*
76118222 TTTGGCACACTCTAGGG
1 TTTGGCA-ACTCTAAGG
76118239 TTTGGCGAACTCTAAGG
1 TTTGGC-AACTCTAAGG
76118256 TTTGGCAGACTCT
1 TTTGGCA-ACTCT
76118269 TCTGTGAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 1 0.04
17 25 0.93
18 1 0.04
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.32
Consensus pattern (16 bp):
TTTGGCAACTCTAAGG
Found at i:76124110 original size:12 final size:12
Alignment explanation
Indices: 76124093--76124119 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
76124083 TCGAACTATG
76124093 TTTTGTTTTTTT
1 TTTTGTTTTTTT
76124105 TTTTGTTTTTTT
1 TTTTGTTTTTTT
76124117 TTT
1 TTT
76124120 GTATAATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (12 bp):
TTTTGTTTTTTT
Found at i:76132946 original size:14 final size:14
Alignment explanation
Indices: 76132927--76132954 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
76132917 AAACTATGTA
76132927 TAAGTTTTCGTTTT
1 TAAGTTTTCGTTTT
76132941 TAAGTTTTCGTTTT
1 TAAGTTTTCGTTTT
76132955 AGTCACTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.14, T:0.64
Consensus pattern (14 bp):
TAAGTTTTCGTTTT
Found at i:76133048 original size:31 final size:31
Alignment explanation
Indices: 76132983--76133048 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
76132973 TTACAATTTG
* * *
76132983 GTCACTAAACTATTCGAAAGATTTCATTTAA
1 GTCACTAAACTATTCAAAAAAATTCATTTAA
*
76133014 GTCACTAAACTATTCAAAAAAAATT-ATTTTA
1 GTCACTAAACTATTC-AAAAAAATTCATTTAA
76133045 GTCA
1 GTCA
76133049 TTAGATTGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 24 0.80
32 6 0.20
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (31 bp):
GTCACTAAACTATTCAAAAAAATTCATTTAA
Found at i:76142306 original size:136 final size:136
Alignment explanation
Indices: 76142062--76142337 Score: 385
Period size: 136 Copynumber: 2.0 Consensus size: 136
76142052 CACTTCTGCC
* * * *
76142062 TAGTTGTAATAGCCCATTTTTAGAGAAATCGGAACAGTGGTTTCGGGACCACAAATTTGATCCCG
1 TAGTTGTAACAACCCATTTTTAGAGAAATCAGAACAGTGGTTTCGGGACCACAAATCTGATCCCG
* * * *
76142127 AAAAAAAAACTTATTTTCATATTATTTTATGGTCTACAGTATGAATGGATACGGGTTAGGAGTTT
66 AAAAAAAAACTTATTTTAATATTATTTTATGGTCTACAGTATGAATAGATACGGATTAGGAGTGT
76142192 TACATT
131 TACATT
* *
76142198 TAGTTGTAACAACCCATTTTTAGA-ATAATTAGAACAGTGGTTTCGGGACCACAAGTCTGATCCC
1 TAGTTGTAACAACCCATTTTTAGAGA-AATCAGAACAGTGGTTTCGGGACCACAAATCTGATCCC
* * * * *
76142262 GAAAAGAAAATTTGTTTTAATATTATTTTATGGTCTAC-GATATGAATAGATATGGATTAGGGGT
65 GAAAAAAAAACTTATTTTAATATTATTTTATGGTCTACAG-TATGAATAGATACGGATTAGGAGT
76142326 GTTACATT
129 GTTACATT
76142334 TAGT
1 TAGT
76142338 GGTATCAGAA
Statistics
Matches: 123, Mismatches: 15, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
135 2 0.02
136 121 0.98
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (136 bp):
TAGTTGTAACAACCCATTTTTAGAGAAATCAGAACAGTGGTTTCGGGACCACAAATCTGATCCCG
AAAAAAAAACTTATTTTAATATTATTTTATGGTCTACAGTATGAATAGATACGGATTAGGAGTGT
TACATT
Found at i:76148096 original size:39 final size:39
Alignment explanation
Indices: 76148027--76148160 Score: 160
Period size: 39 Copynumber: 3.4 Consensus size: 39
76148017 AAACAATCAA
* * * * *
76148027 TAACAATCAGTTATTCAGTATAGTAATTTAGTCATTCAG
1 TAACTATCAATTATTCAATACAGTAATTTAGTTATTCAG
* * * * * *
76148066 TAACTATCAAATATTCATTGCAGTAGTTTAGTTTTTCAA
1 TAACTATCAATTATTCAATACAGTAATTTAGTTATTCAG
*
76148105 TATCTATCAATTATTCAATACAGTAATTTAGTTATTCAG
1 TAACTATCAATTATTCAATACAGTAATTTAGTTATTCAG
76148144 TAACTATCAATTATTCA
1 TAACTATCAATTATTCA
76148161 CTATAGTAGT
Statistics
Matches: 77, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (39 bp):
TAACTATCAATTATTCAATACAGTAATTTAGTTATTCAG
Found at i:76148169 original size:78 final size:78
Alignment explanation
Indices: 76148023--76148173 Score: 212
Period size: 78 Copynumber: 1.9 Consensus size: 78
76148013 TATCAAACAA
* * * * *
76148023 TCAATAACAATCAGTTATTCAGTATAGTAATTTAGTCATTCAGTAACTATCAAATATTCATTGCA
1 TCAATAACAATCAATTATTCAATACAGTAATTTAGTCATTCAGTAACTATCAAATATTCACTACA
76148088 GTAGTTTAGTTTT
66 GTAGTTTAGTTTT
* * * * *
76148101 TCAATATCTATCAATTATTCAATACAGTAATTTAGTTATTCAGTAACTATCAATTATTCACTATA
1 TCAATAACAATCAATTATTCAATACAGTAATTTAGTCATTCAGTAACTATCAAATATTCACTACA
76148166 GTAGTTTA
66 GTAGTTTA
76148174 CTCCTATTAA
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
78 63 1.00
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (78 bp):
TCAATAACAATCAATTATTCAATACAGTAATTTAGTCATTCAGTAACTATCAAATATTCACTACA
GTAGTTTAGTTTT
Found at i:76149234 original size:9 final size:9
Alignment explanation
Indices: 76149223--76149263 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
76149213 TTGTCTTTCT
76149223 TTTTATTT-
1 TTTTATTTA
76149231 TTTTA-TTA
1 TTTTATTTA
* *
76149239 TTTCATTTG
1 TTTTATTTA
76149248 TTTTATTTA
1 TTTTATTTA
76149257 TTTTATT
1 TTTTATT
76149264 AACTTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
7 2 0.07
8 9 0.33
9 16 0.59
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.78
Consensus pattern (9 bp):
TTTTATTTA
Found at i:76149736 original size:3 final size:3
Alignment explanation
Indices: 76149728--76149799 Score: 87
Period size: 3 Copynumber: 24.3 Consensus size: 3
76149718 ATTTTATTTC
76149728 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA ATTCA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-T-A
* *
76149777 AT- TTA ATA ACA ATA AT- ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
76149800 GATATGCTAA
Statistics
Matches: 60, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
2 5 0.08
3 51 0.85
4 2 0.03
5 2 0.03
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Done.