Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 246 of 410
Found at i:76151787 original size:35 final size:35
Alignment explanation
Indices: 76151748--76151914 Score: 181
Period size: 35 Copynumber: 4.6 Consensus size: 35
76151738 CATGGAAAAG
76151748 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
*
76151783 TGTGATATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
* *
76151818 TGTGATATGTAGATATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGT
** * *** *
76151858 TAAGAAATGTAGGTATGGCATTGCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
*
76151893 TGTAAAAATGTAGGTATGGTAT
1 TGT-GAAATGTAGGTATGGTAT
76151915 TTCAATGAGG
Statistics
Matches: 111, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
35 62 0.56
36 16 0.14
37 2 0.02
38 4 0.04
40 27 0.24
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.34
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
Found at i:76151868 original size:75 final size:75
Alignment explanation
Indices: 76151770--76151919 Score: 185
Period size: 75 Copynumber: 2.0 Consensus size: 75
76151760 GTATGGTATC
** * * * * * *
76151770 ATCCATACTGAGTTGTGATATGTAGGTATGGTATCATCCATACTGAGTTGT-GATATGTAGATAT
1 ATCCATACTGAGTTAAGAAATGTAGGTATGGCATCACCCATACCGAGTTGTAAAAATGTAGATAT
76151834 GGTATTATCAA
66 GGTATT-TCAA
** *
76151845 ATCCATACTGAGTTAAGAAATGTAGGTATGGCATTGCCCATACCGAGTTGTAAAAATGTAGGTAT
1 ATCCATACTGAGTTAAGAAATGTAGGTATGGCATCACCCATACCGAGTTGTAAAAATGTAGATAT
76151910 GGTATTTCAA
66 GGTATTTCAA
76151920 TGAGGAAAAC
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
75 47 0.75
76 16 0.25
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.34
Consensus pattern (75 bp):
ATCCATACTGAGTTAAGAAATGTAGGTATGGCATCACCCATACCGAGTTGTAAAAATGTAGATAT
GGTATTTCAA
Found at i:76153201 original size:19 final size:19
Alignment explanation
Indices: 76153177--76153216 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
76153167 TTTAATCCAA
76153177 AAATGGTAAATAAAACCAT
1 AAATGGTAAATAAAACCAT
76153196 AAATGGTAAATAAAACCAT
1 AAATGGTAAATAAAACCAT
76153215 AA
1 AA
76153217 GTTAATGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.20
Consensus pattern (19 bp):
AAATGGTAAATAAAACCAT
Found at i:76159981 original size:26 final size:26
Alignment explanation
Indices: 76159951--76160058 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
76159941 TGAAATTCCC
76159951 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
76159977 ATCATGGGACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
76160003 ATCATGAAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
76160029 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
76160055 ATCA
1 ATCA
76160059 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:76161000 original size:19 final size:21
Alignment explanation
Indices: 76160976--76161015 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
76160966 TCACTTATCT
76160976 AACTTTA-AGACAA-TTAAAA
1 AACTTTAGAGACAATTTAAAA
*
76160995 AACTTTAGAGAGAATTTAAAA
1 AACTTTAGAGACAATTTAAAA
76161016 TCATTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 5 0.28
21 6 0.33
ACGTcount: A:0.55, C:0.07, G:0.10, T:0.28
Consensus pattern (21 bp):
AACTTTAGAGACAATTTAAAA
Found at i:76163910 original size:6 final size:7
Alignment explanation
Indices: 76163892--76163916 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
76163882 ATAGTTGATA
76163892 GAAAAAT
1 GAAAAAT
76163899 GAAAAAT
1 GAAAAAT
76163906 GAAAAAT
1 GAAAAAT
76163913 GAAA
1 GAAA
76163917 TATGTTGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (7 bp):
GAAAAAT
Found at i:76165303 original size:2 final size:2
Alignment explanation
Indices: 76165296--76165335 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
76165286 GGTGTATGAT
76165296 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
76165336 TATATATAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:76165905 original size:18 final size:18
Alignment explanation
Indices: 76165882--76165941 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
76165872 AAATAACAAT
76165882 ATAAAAATTATGAAAAAA
1 ATAAAAATTATGAAAAAA
**
76165900 ATAAAAATCCTG--AAAA
1 ATAAAAATTATGAAAAAA
**
76165916 ATAAAAA-TAAAAATAAAA
1 ATAAAAATTATGAA-AAAA
76165934 ATAAAAAT
1 ATAAAAAT
76165942 AAAATGATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
16 11 0.34
18 21 0.66
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.20
Consensus pattern (18 bp):
ATAAAAATTATGAAAAAA
Found at i:76165921 original size:6 final size:6
Alignment explanation
Indices: 76165912--76165945 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
76165902 AAAAATCCTG
76165912 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
76165946 TGATTTATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:76167156 original size:26 final size:26
Alignment explanation
Indices: 76167127--76167233 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
76167117 TGATACAAAT
76167127 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
76167153 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
76167179 TGATAATGGGTTAGGTAAATG-TCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
76167204 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
76167230 TGAT
1 TGAT
76167234 GGGAATTTCA
Statistics
Matches: 78, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
25 24 0.31
26 54 0.69
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:76167221 original size:51 final size:52
Alignment explanation
Indices: 76167127--76167233 Score: 198
Period size: 51 Copynumber: 2.1 Consensus size: 52
76167117 TGATACAAAT
*
76167127 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
76167179 TGATAATGGGTTAGGTAAATG-TCCATGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
76167230 TGAT
1 TGAT
76167234 GGGAATTTCA
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 33 0.61
52 21 0.39
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
Found at i:76172222 original size:2 final size:2
Alignment explanation
Indices: 76172215--76172239 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
76172205 GTAATGGTTT
76172215 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
76172240 CTTTCCACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:76187232 original size:2 final size:2
Alignment explanation
Indices: 76187225--76187250 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
76187215 TAGGTCGAGG
76187225 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
76187251 CTAAACATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:76188949 original size:21 final size:20
Alignment explanation
Indices: 76188908--76188967 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 20
76188898 ACAATTAAAC
*
76188908 TTAATT-AAATAAATTAAGA
1 TTAATTAAAATAAAATAAGA
*
76188927 TTAATTAAAACTAAAATATGA
1 TTAATTAAAA-TAAAATAAGA
76188948 TTAATTAAAATATAAATAAG
1 TTAATTAAAATA-AAATAAG
76188968 GTTTATGAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 6 0.17
20 5 0.14
21 24 0.69
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (20 bp):
TTAATTAAAATAAAATAAGA
Found at i:76189444 original size:28 final size:30
Alignment explanation
Indices: 76189393--76189458 Score: 73
Period size: 28 Copynumber: 2.2 Consensus size: 30
76189383 TAAAAAAATT
76189393 AATTTTTAATAAAAGTTAAAATTT-TTA-A
1 AATTTTTAATAAAAGTTAAAATTTATTATA
* * **
76189421 AATTTTTATTAAAATTTATTATTTATTATA
1 AATTTTTAATAAAAGTTAAAATTTATTATA
76189451 ATATTTTT
1 A-ATTTTT
76189459 TTCTAATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 20 0.65
29 3 0.10
30 2 0.06
31 6 0.19
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (30 bp):
AATTTTTAATAAAAGTTAAAATTTATTATA
Found at i:76191184 original size:46 final size:45
Alignment explanation
Indices: 76191133--76191302 Score: 180
Period size: 46 Copynumber: 3.7 Consensus size: 45
76191123 CACCTTGTAA
* *
76191133 CCGATGCATGTCTCAGACATGTCTTACATTGGCTTACGTCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCTCGAGG
* * * * *
76191179 CCGATGCATGTCCCAGACATGTCTTATACTAGCAGTCGTCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCGTCTCGAGG
* * * *
76191225 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-GCGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCGT-CTCGAGG
76191273 CCGATGCATGTCCCAGACATGTCTTACACT
1 CCGATGCATGTCCCAGACATGTCTTACACT
76191303 AGCTCACAAT
Statistics
Matches: 102, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
46 53 0.52
47 27 0.26
48 21 0.21
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCTCGAGG
Found at i:76191251 original size:94 final size:92
Alignment explanation
Indices: 76191133--76191305 Score: 233
Period size: 94 Copynumber: 1.9 Consensus size: 92
76191123 CACCTTGTAA
* * * * *
76191133 CCGATGCATGTCTCAGACATGTCTTACATTGGCT-TACGT-CTCGAGGCCGATGCATGTCCCAGA
1 CCGATGCATGTCCCAAACATGTCTTACACTGGCTCT-CATAAT-GAGGCCGATGCATGTCCCAGA
*
76191196 CATGTCTTATACTAGCAGTCGTCTCAATG
64 CATGTCTTACACTAGCAGTCGTCTCAATG
*
76191225 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGCGGCCGATGCATGTCCCAGA
1 CCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGA
76191290 CATGTCTTACACTAGC
64 CATGTCTTACACTAGC
76191306 TCACAATAAC
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
92 6 0.09
93 12 0.17
94 50 0.71
95 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (92 bp):
CCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGACA
TGTCTTACACTAGCAGTCGTCTCAATG
Found at i:76196692 original size:40 final size:40
Alignment explanation
Indices: 76196626--76196792 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
76196616 AAATTGAATG
* * *
76196626 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
76196665 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
76196705 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
76196745 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
76196785 ATATCCGG
1 ATATCCGG
76196793 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76200591 original size:93 final size:93
Alignment explanation
Indices: 76200479--76200650 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
76200469 CGCCCATAAG
* *
76200479 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
76200544 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
76200572 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
76200637 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
76200651 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:76200647 original size:46 final size:46
Alignment explanation
Indices: 76200472--76200647 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
76200462 TGTAACCCGC
* * *
76200472 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
76200518 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
76200568 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
76200611 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
76200648 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:76208168 original size:93 final size:93
Alignment explanation
Indices: 76208056--76208227 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
76208046 CGCCCATAAG
* *
76208056 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
76208121 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
76208149 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
76208214 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
76208228 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:76208224 original size:46 final size:46
Alignment explanation
Indices: 76208049--76208224 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
76208039 TGTAACCCGC
* * *
76208049 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
76208095 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
76208145 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
76208188 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
76208225 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:76212219 original size:2 final size:2
Alignment explanation
Indices: 76212214--76212244 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
76212204 TTAAATGTTA
76212214 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
76212245 AACACAAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76217625 original size:46 final size:46
Alignment explanation
Indices: 76217578--76217804 Score: 314
Period size: 46 Copynumber: 5.0 Consensus size: 46
76217568 GCTCTCTGAT
* *
76217578 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
76217624 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** ** * *
76217670 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
76217716 ATGAAATGTGTAAGACCATGGTTGAAA-ATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
76217761 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
76217805 TCAAAGATAA
Statistics
Matches: 160, Mismatches: 19, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
44 1 0.01
45 39 0.24
46 120 0.75
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:76218105 original size:16 final size:17
Alignment explanation
Indices: 76218084--76218116 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
76218074 AATGATGTGC
76218084 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
76218100 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
76218117 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:76224669 original size:17 final size:17
Alignment explanation
Indices: 76224636--76224671 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
76224626 AAAAGTACAG
* *
76224636 AAAAAGAAAATATAAAA
1 AAAAAGAAAAAAGAAAA
76224653 AAAAAGAAAAAAGAAAA
1 AAAAAGAAAAAAGAAAA
76224670 AA
1 AA
76224672 TATTATGTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.86, C:0.00, G:0.08, T:0.06
Consensus pattern (17 bp):
AAAAAGAAAAAAGAAAA
Found at i:76230335 original size:29 final size:29
Alignment explanation
Indices: 76230302--76230361 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
76230292 ATAACCAAAC
*
76230302 CTACAAAAACTTTATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
76230331 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
76230360 CT
1 CT
76230362 TTGAATCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:76230354 original size:15 final size:15
Alignment explanation
Indices: 76230308--76230355 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
76230298 AAACCTACAA
*
76230308 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
76230323 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
76230337 AAACTTCATATCCAT
1 AAACTTCATATCCAT
76230352 AAAC
1 AAAC
76230356 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:76234480 original size:19 final size:19
Alignment explanation
Indices: 76234456--76234496 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
76234446 GATTTGACTT
76234456 AAGGCTC-TAGACGTTCGGA
1 AAGGCTCTTA-ACGTTCGGA
*
76234475 AAGGCTCTTAACGTTCTGA
1 AAGGCTCTTAACGTTCGGA
76234494 AAG
1 AAG
76234497 AAACTTAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (19 bp):
AAGGCTCTTAACGTTCGGA
Found at i:76237365 original size:16 final size:16
Alignment explanation
Indices: 76237341--76237372 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
76237331 ATTCTCCTTT
76237341 TCCTCAAAAAGATTTA
1 TCCTCAAAAAGATTTA
*
76237357 TCCTTAAAAAGATTTA
1 TCCTCAAAAAGATTTA
76237373 ATAAATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.16, G:0.06, T:0.34
Consensus pattern (16 bp):
TCCTCAAAAAGATTTA
Found at i:76240965 original size:33 final size:33
Alignment explanation
Indices: 76240923--76240988 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
76240913 TGCTCATACG
76240923 GGGATTCGAACACGAAATCTCAGGGCAAGCTAA
1 GGGATTCGAACACGAAATCTCAGGGCAAGCTAA
76240956 GGGATTCGAACACGAAATCTCAGGGCAAGCTAA
1 GGGATTCGAACACGAAATCTCAGGGCAAGCTAA
76240989 CACCTTACCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.21, G:0.27, T:0.15
Consensus pattern (33 bp):
GGGATTCGAACACGAAATCTCAGGGCAAGCTAA
Found at i:76243511 original size:20 final size:18
Alignment explanation
Indices: 76243480--76243516 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
76243470 TATAAATTAC
76243480 AAAAAATATAAAAATATG
1 AAAAAATATAAAAATATG
76243498 AAAAAATATTTAAAAATAT
1 AAAAAATA--TAAAAATAT
76243517 AGAATCTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
20 9 0.53
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (18 bp):
AAAAAATATAAAAATATG
Found at i:76244913 original size:17 final size:17
Alignment explanation
Indices: 76244891--76244957 Score: 80
Period size: 17 Copynumber: 3.7 Consensus size: 17
76244881 TGCAAAATCG
76244891 GATAAGTTTGTGTTTAT
1 GATAAGTTTGTGTTTAT
* *
76244908 GATAAGTTTGTAAACTTATAG
1 GATAAGTTTGT---GTT-TAT
76244929 GATAAGTTTGTGTTTAT
1 GATAAGTTTGTGTTTAT
76244946 GATAAGTTTGTG
1 GATAAGTTTGTG
76244958 CTTGAGAGTC
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
17 25 0.60
18 2 0.05
20 2 0.05
21 13 0.31
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.46
Consensus pattern (17 bp):
GATAAGTTTGTGTTTAT
Found at i:76247965 original size:29 final size:29
Alignment explanation
Indices: 76247931--76248005 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
76247921 TACTCGATTT
*
76247931 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
76247960 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
76247989 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
76248006 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:76248022 original size:29 final size:29
Alignment explanation
Indices: 76247989--76248062 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
76247979 CCTTCGAGCT
76247989 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
76248018 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
76248047 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
76248063 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:76255919 original size:29 final size:29
Alignment explanation
Indices: 76255885--76255959 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
76255875 TACTCGATTT
*
76255885 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
76255914 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
76255943 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
76255960 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:76255976 original size:29 final size:29
Alignment explanation
Indices: 76255943--76256016 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
76255933 CCTTCGAGCT
76255943 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
76255972 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
76256001 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
76256017 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:76257225 original size:1 final size:1
Alignment explanation
Indices: 76257221--76257245 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
76257211 TCCATGCTCA
76257221 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
76257246 CATTTCTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:76259464 original size:24 final size:23
Alignment explanation
Indices: 76259427--76259495 Score: 77
Period size: 24 Copynumber: 3.0 Consensus size: 23
76259417 TACCGATATA
* *
76259427 TCAGCTGGTAAGAGCTTACTGTT
1 TCAGCTCGTTAGAGCTTACTGTT
76259450 TGCAGCTCGTTAGAGCTTA-TCGTT
1 T-CAGCTCGTTAGAGCTTACT-GTT
**
76259474 TCAGCTCAATAGAGCTTACTGT
1 TCAGCTCGTTAGAGCTTACTGT
76259496 CCATCAGCTC
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
23 19 0.49
24 20 0.51
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (23 bp):
TCAGCTCGTTAGAGCTTACTGTT
Found at i:76259486 original size:23 final size:24
Alignment explanation
Indices: 76259437--76259495 Score: 77
Period size: 23 Copynumber: 2.5 Consensus size: 24
76259427 TCAGCTGGTA
**
76259437 AGAGCTTACTGTTTGCAGCTCGTT
1 AGAGCTTACTGTTTGCAGCTCAAT
76259461 AGAGCTTA-TCGTTT-CAGCTCAAT
1 AGAGCTTACT-GTTTGCAGCTCAAT
76259484 AGAGCTTACTGT
1 AGAGCTTACTGT
76259496 CCATCAGCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 18 0.58
24 13 0.42
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (24 bp):
AGAGCTTACTGTTTGCAGCTCAAT
Found at i:76259698 original size:20 final size:20
Alignment explanation
Indices: 76259675--76259832 Score: 131
Period size: 20 Copynumber: 8.0 Consensus size: 20
76259665 GTTCATACGG
76259675 ATGAATTACTGTTTATATGA
1 ATGAATTACTGTTTATATGA
* * * *
76259695 ATGAAGTACTATTTATACGG
1 ATGAATTACTGTTTATATGA
*
76259715 ATGAATTACTATTTATATGA
1 ATGAATTACTGTTTATATGA
* ** * * *
76259735 ACGAAGAACTGTTTTTACGG
1 ATGAATTACTGTTTATATGA
* *
76259755 ATGGATTACTGTTTATATGG
1 ATGAATTACTGTTTATATGA
* * * *
76259775 ATGAAGTACTATTTATACGG
1 ATGAATTACTGTTTATATGA
*
76259795 ATGAGTTACTG-TTAT-TGA
1 ATGAATTACTGTTTATATGA
*
76259813 ATGAATTATTGTTTATATGA
1 ATGAATTACTGTTTATATGA
76259833 TTGAGAGTGA
Statistics
Matches: 105, Mismatches: 31, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
18 10 0.10
19 8 0.08
20 87 0.83
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (20 bp):
ATGAATTACTGTTTATATGA
Found at i:76259724 original size:40 final size:40
Alignment explanation
Indices: 76259669--76259817 Score: 212
Period size: 40 Copynumber: 3.8 Consensus size: 40
76259659 CTATGTGTTC
76259669 ATACGGATGAATTACTGTTTATATGAATGAAGTACTATTT
1 ATACGGATGAATTACTGTTTATATGAATGAAGTACTATTT
* * * *
76259709 ATACGGATGAATTACTATTTATATGAACGAAGAACTGTTT
1 ATACGGATGAATTACTGTTTATATGAATGAAGTACTATTT
* * *
76259749 TTACGGATGGATTACTGTTTATATGGATGAAGTACTATTT
1 ATACGGATGAATTACTGTTTATATGAATGAAGTACTATTT
*
76259789 ATACGGATGAGTTACTG-TTAT-TGAATGAA
1 ATACGGATGAATTACTGTTTATATGAATGAA
76259818 TTATTGTTTA
Statistics
Matches: 94, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
38 7 0.07
39 4 0.04
40 83 0.88
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (40 bp):
ATACGGATGAATTACTGTTTATATGAATGAAGTACTATTT
Found at i:76263379 original size:2 final size:2
Alignment explanation
Indices: 76263372--76263406 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
76263362 GTGAAAGTCG
*
76263372 AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76263407 TTGAAAGTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
AT
Found at i:76264554 original size:42 final size:43
Alignment explanation
Indices: 76264466--76264642 Score: 322
Period size: 42 Copynumber: 4.2 Consensus size: 43
76264456 GGTTAAATCC
*
76264466 AGCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCT
1 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCT
*
76264509 AGCAGGCTTAGTGCCGGTGATGTGTATT-GGGCCTTCGTGCCT
1 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCT
76264551 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCT
1 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCT
76264594 AGCAGGCTTCGTGCC-GTGATGTGTATTCGGGCCTTCGTGCCT
1 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCT
76264636 AGCAGGC
1 AGCAGGC
76264643 GTAATGCCGG
Statistics
Matches: 130, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
42 75 0.58
43 55 0.42
ACGTcount: A:0.11, C:0.24, G:0.35, T:0.30
Consensus pattern (43 bp):
AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCT
Found at i:76264584 original size:85 final size:85
Alignment explanation
Indices: 76264466--76264642 Score: 320
Period size: 85 Copynumber: 2.1 Consensus size: 85
76264456 GGTTAAATCC
*
76264466 AGCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATG
1 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCC-GTGATG
76264531 TGTATT-GGGCCTTCGTGCCT
65 TGTATTCGGGCCTTCGTGCCT
*
76264551 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGTGATGT
1 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGTGATGT
76264616 GTATTCGGGCCTTCGTGCCT
66 GTATTCGGGCCTTCGTGCCT
76264636 AGCAGGC
1 AGCAGGC
76264643 GTAATGCCGG
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
84 12 0.13
85 77 0.87
ACGTcount: A:0.11, C:0.24, G:0.35, T:0.30
Consensus pattern (85 bp):
AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGTGATGT
GTATTCGGGCCTTCGTGCCT
Found at i:76265936 original size:46 final size:45
Alignment explanation
Indices: 76265866--76266179 Score: 432
Period size: 46 Copynumber: 6.8 Consensus size: 45
76265856 GGTGTTACAA
* * * * *
76265866 TGCCATAGTATCTTTCAACTATGGTCTTACTCGTTCTCTTTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATT-TCTATCATGT
**
76265912 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCCT-TCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT---CTATCATGT
** * *
76265959 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCATGT
*
76266005 TGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCATGT
76266051 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCATGT
*
76266097 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCATGT
76266143 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
76266180 ATTTCAGAAA
Statistics
Matches: 249, Mismatches: 13, Indels: 13
0.91 0.05 0.05
Matches are distributed among these distances:
44 1 0.00
45 5 0.02
46 195 0.78
47 46 0.18
48 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCATGT
Found at i:76266218 original size:92 final size:92
Alignment explanation
Indices: 76266019--76266219 Score: 203
Period size: 92 Copynumber: 2.2 Consensus size: 92
76266009 ATGGTATCTT
**
76266019 TCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 TCAACCATCATCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
** *** * **
76266084 TTTTCTATCATGTTGCCATGGTATCTT
66 TTTTCTATCATGAAGCCACACTACCCG
** *
76266111 TCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 TCAACCATCATCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
*
76266176 -TTTCATTTCA-GAAAGCACACACT-CCCG
66 TTTTC-TATCATG-AAGC-CACACTACCCG
*
76266203 TGAACC-TCATCCTTACA
1 TCAACCATCAT-CTTACA
76266220 GCGGGATTAC
Statistics
Matches: 92, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
91 7 0.08
92 82 0.89
93 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.36
Consensus pattern (92 bp):
TCAACCATCATCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
TTTTCTATCATGAAGCCACACTACCCG
Found at i:76266218 original size:138 final size:138
Alignment explanation
Indices: 76265953--76266219 Score: 324
Period size: 138 Copynumber: 1.9 Consensus size: 138
76265943 CATTTCCCCT
** * *
76265953 TCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGTCATGGTATCT
1 TCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCT
** *** * ** **
76266018 TTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
66 TTCAACCATGGTCTTACACATTTCATATCATGAAGCCACACTACCCGTCAACCATCATCTTACAC
76266083 ATTTTCTA
131 ATTTTCTA
* *
76266091 TCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTATCT
1 TCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCT
* *
76266156 TTCAACCATGGTCTTACACATTTCATTTCA-GAAAGCACACACT-CCCGTGAACC-TCATCCTTA
66 TTCAACCATGGTCTTACACATTTCATATCATG-AAGC-CACACTACCCGTCAACCATCAT-CTTA
76266218 CA
128 CA
76266220 GCGGGATTAC
Statistics
Matches: 108, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
137 3 0.03
138 102 0.94
139 3 0.03
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (138 bp):
TCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCT
TTCAACCATGGTCTTACACATTTCATATCATGAAGCCACACTACCCGTCAACCATCATCTTACAC
ATTTTCTA
Found at i:76268945 original size:2 final size:2
Alignment explanation
Indices: 76268938--76268962 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
76268928 TCTTACCACC
76268938 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
76268963 ACACCCGGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76270231 original size:39 final size:39
Alignment explanation
Indices: 76270172--76270250 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
76270162 ATCACAAGGA
*
76270172 AATCTTATGTCACATTTGTACATTATGAATTTGGTACAT
1 AATCTTATGTCACATGTGTACATTATGAATTTGGTACAT
76270211 AATCTTATGTCACATGTGTACATTATGAATTTGGTACAT
1 AATCTTATGTCACATGTGTACATTATGAATTTGGTACAT
76270250 A
1 A
76270251 CTTACCCGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.42
Consensus pattern (39 bp):
AATCTTATGTCACATGTGTACATTATGAATTTGGTACAT
Found at i:76270699 original size:25 final size:25
Alignment explanation
Indices: 76270667--76270728 Score: 115
Period size: 25 Copynumber: 2.5 Consensus size: 25
76270657 TAAAGGTCCA
*
76270667 CACACATAGTTCTCTTACTCATTCG
1 CACACATAGTGCTCTTACTCATTCG
76270692 CACACATAGTGCTCTTACTCATTCG
1 CACACATAGTGCTCTTACTCATTCG
76270717 CACACATAGTGC
1 CACACATAGTGC
76270729 CACGTTTCCT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.26, C:0.32, G:0.11, T:0.31
Consensus pattern (25 bp):
CACACATAGTGCTCTTACTCATTCG
Found at i:76270746 original size:24 final size:24
Alignment explanation
Indices: 76270689--76270825 Score: 109
Period size: 24 Copynumber: 5.6 Consensus size: 24
76270679 TCTTACTCAT
*
76270689 TCGCACACATAGTGCTCTTAC-TCAT-
1 TCGCACACATAGTGC-C--ACGTAATC
*
76270714 TCGCACACATAGTGCCACGT-TTCC
1 TCGCACACATAGTGCCACGTAAT-C
* *
76270738 TCGCACACATAGTGCTATGTAATC
1 TCGCACACATAGTGCCACGTAATC
* * *
76270762 TTGCACACATAGTGCCACGTAGTTT
1 TCGCACACATAGTGCCACGTA-ATC
* * * *
76270787 TTGCACACATAGTGCCGCATAACC
1 TCGCACACATAGTGCCACGTAATC
76270811 TCGCACACATAGTGC
1 TCGCACACATAGTGC
76270826 TAAAATATCT
Statistics
Matches: 92, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
22 3 0.03
23 1 0.01
24 52 0.57
25 36 0.39
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.27
Consensus pattern (24 bp):
TCGCACACATAGTGCCACGTAATC
Found at i:76270779 original size:48 final size:49
Alignment explanation
Indices: 76270689--76270781 Score: 145
Period size: 49 Copynumber: 1.9 Consensus size: 49
76270679 TCTTACTCAT
* *
76270689 TCGCACACATAGTGCTCTTACTCATTCGCACACATAGTGCCACGTTTCC
1 TCGCACACATAGTGCTATTAATCATTCGCACACATAGTGCCACGTTTCC
76270738 TCGCACACATAGTGCTATGTAATC-TT-GCACACATAGTGCCACGT
1 TCGCACACATAGTGCTAT-TAATCATTCGCACACATAGTGCCACGT
76270782 AGTTTTTGCA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
48 18 0.44
49 19 0.46
50 4 0.10
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (49 bp):
TCGCACACATAGTGCTATTAATCATTCGCACACATAGTGCCACGTTTCC
Found at i:76270817 original size:49 final size:48
Alignment explanation
Indices: 76270714--76270825 Score: 127
Period size: 49 Copynumber: 2.3 Consensus size: 48
76270704 TCTTACTCAT
* ** *
76270714 TCGCACACATAGTGCCACGTTTCCTCGCACACATAGTGCTATGTAATC
1 TCGCACACATAGTGCCACGTTTCCTCGCACACATAGTGCCACATAACC
* * * *
76270762 TTGCACACATAGTGCCACGTAGTT-TTTGCACACATAGTGCCGCATAACC
1 TCGCACACATAGTGCCACGT--TTCCTCGCACACATAGTGCCACATAACC
76270811 TCGCACACATAGTGC
1 TCGCACACATAGTGC
76270826 TAAAATATCT
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
48 19 0.36
49 32 0.60
50 2 0.04
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
TCGCACACATAGTGCCACGTTTCCTCGCACACATAGTGCCACATAACC
Found at i:76272110 original size:17 final size:19
Alignment explanation
Indices: 76272081--76272124 Score: 58
Period size: 17 Copynumber: 2.4 Consensus size: 19
76272071 TTCTCTCTCC
76272081 TTCATTTTCTTCTT-TT-A
1 TTCATTTTCTTCTTATTAA
76272098 TTCATCTTT-TTCTTATTAA
1 TTCAT-TTTCTTCTTATTAA
76272117 TTCATTTT
1 TTCATTTT
76272125 ATTTAGAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 10 0.42
18 8 0.33
19 6 0.25
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (19 bp):
TTCATTTTCTTCTTATTAA
Found at i:76278339 original size:24 final size:23
Alignment explanation
Indices: 76278307--76278417 Score: 89
Period size: 24 Copynumber: 4.7 Consensus size: 23
76278297 TCTTACTCAT
*
76278307 TCGCACACATAGTGCCACGTTTCC
1 TCGCACACATAGTGCCACGTAT-C
* *
76278331 TCGCACACATAGT-CTATGTAATC
1 TCGCACACATAGTGCCACGT-ATC
* * *
76278354 TCACACACATAGTGCCACCTAGTTT
1 TCGCACACATAGTGCCACGTA--TC
* * *
76278379 TTGCACACATAGTGCCACATAACC
1 TCGCACACATAGTGCCACGT-ATC
76278403 TCGCACACATAGTGC
1 TCGCACACATAGTGC
76278418 TAAAATATCT
Statistics
Matches: 68, Mismatches: 14, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
23 18 0.26
24 31 0.46
25 18 0.26
26 1 0.01
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.25
Consensus pattern (23 bp):
TCGCACACATAGTGCCACGTATC
Found at i:76286411 original size:30 final size:31
Alignment explanation
Indices: 76286354--76286413 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
76286344 ATGGTAAAAT
* *
76286354 AATTTAAATATAATAAAATTAAGATATTAAA
1 AATTAAAATAAAATAAAATTAAGATATTAAA
76286385 AATTAAAATAAAAT-AAATATAA-ATATTAA
1 AATTAAAATAAAATAAAAT-TAAGATATTAA
76286414 TTTATTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (31 bp):
AATTAAAATAAAATAAAATTAAGATATTAAA
Found at i:76297367 original size:41 final size:41
Alignment explanation
Indices: 76297276--76297359 Score: 152
Period size: 41 Copynumber: 2.1 Consensus size: 41
76297266 AAGGTGTTAG
*
76297276 AAATGTTGTCAAATATTTCATGTCTTACTTTGTATCCTAGA
1 AAATGTTGTCAAATATCTCATGTCTTACTTTGTATCCTAGA
76297317 AAATGTTGTCAAATATCTCATGTCTTACTTTGTATCCTA-A
1 AAATGTTGTCAAATATCTCATGTCTTACTTTGTATCCTAGA
76297357 AAA
1 AAA
76297360 GCTTTGTCTT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
40 4 0.10
41 38 0.90
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (41 bp):
AAATGTTGTCAAATATCTCATGTCTTACTTTGTATCCTAGA
Found at i:76299246 original size:2 final size:2
Alignment explanation
Indices: 76299196--76299238 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
76299186 ATTCATCTAC
76299196 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
76299238 T
1 T
76299239 TCATATATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:76301533 original size:19 final size:19
Alignment explanation
Indices: 76301505--76301543 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
76301495 TTTTAAATTC
76301505 ATTTAAGTAGATAAATCTT
1 ATTTAAGTAGATAAATCTT
*
76301524 ATTTAGGTAGATAAATCTT
1 ATTTAAGTAGATAAATCTT
76301543 A
1 A
76301544 GAATAAATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.13, T:0.41
Consensus pattern (19 bp):
ATTTAAGTAGATAAATCTT
Found at i:76305115 original size:3 final size:3
Alignment explanation
Indices: 76305107--76305149 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
76305097 AATTATGCAA
76305107 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
76305150 TGGAATAAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:76305536 original size:2 final size:2
Alignment explanation
Indices: 76305529--76305564 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
76305519 TAGTGACATT
76305529 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
76305565 ATTTTCTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:76306282 original size:27 final size:26
Alignment explanation
Indices: 76306239--76306290 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
76306229 AAGAATTAAG
*
76306239 TTTTTTATTAAATATAAATTTATTTAC
1 TTTTTTATTAAATAT-AACTTATTTAC
*
76306266 TTTTTATATTATA-ATAACTTATTTA
1 TTTTT-TATTAAATATAACTTATTTA
76306291 TTATTAACTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 9 0.41
27 7 0.32
28 6 0.27
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
TTTTTTATTAAATATAACTTATTTAC
Found at i:76306756 original size:3 final size:3
Alignment explanation
Indices: 76306748--76306784 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
76306738 ATTCAAGCTC
76306748 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
76306785 TGCACGTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:76309305 original size:21 final size:21
Alignment explanation
Indices: 76309256--76309314 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
76309246 ATAATAAATT
*
76309256 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
76309276 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
76309298 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
76309315 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:76314194 original size:7 final size:7
Alignment explanation
Indices: 76314182--76314211 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
76314172 AGATTTTACA
76314182 TATGGAC
1 TATGGAC
76314189 TATGGAC
1 TATGGAC
*
76314196 CATGGAC
1 TATGGAC
76314203 TATGGAC
1 TATGGAC
76314210 TA
1 TA
76314212 CAGTTTCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.27
Consensus pattern (7 bp):
TATGGAC
Found at i:76314208 original size:49 final size:49
Alignment explanation
Indices: 76314148--76314254 Score: 171
Period size: 49 Copynumber: 2.2 Consensus size: 49
76314138 GATTTTATAT
*
76314148 ATGGACCATGGACTA-TGATTTCTAAGATTTTACATATGGACTATGGACC
1 ATGGACCATGGACTACAG-TTTCTAAGATTTTACATATGGACTATGGACC
* *
76314197 ATGGACTATGGACTACAGTTTCTAAGATTTTACTTATGGACTATGGACC
1 ATGGACCATGGACTACAGTTTCTAAGATTTTACATATGGACTATGGACC
76314246 ATGGACCAT
1 ATGGACCAT
76314255 ATATGGTTTG
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
49 52 0.98
50 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.33
Consensus pattern (49 bp):
ATGGACCATGGACTACAGTTTCTAAGATTTTACATATGGACTATGGACC
Found at i:76315002 original size:30 final size:30
Alignment explanation
Indices: 76314967--76315023 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
76314957 CCGATGGCCA
76314967 AGCTTAGCAGCTCAAGTGGTGTTTCAAACC
1 AGCTTAGCAGCTCAAGTGGTGTTTCAAACC
76314997 AGCTTAGCAGCTCAAGTGGTGTTTCAA
1 AGCTTAGCAGCTCAAGTGGTGTTTCAA
76315024 GGTTTGGGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (30 bp):
AGCTTAGCAGCTCAAGTGGTGTTTCAAACC
Found at i:76320224 original size:14 final size:14
Alignment explanation
Indices: 76320200--76320238 Score: 64
Period size: 13 Copynumber: 2.9 Consensus size: 14
76320190 TTTCAATTTT
76320200 ATTTT-AATAATAA
1 ATTTTAAATAATAA
76320213 ATTTTAAATAAT-A
1 ATTTTAAATAATAA
76320226 ATTTTAAATAATA
1 ATTTTAAATAATA
76320239 TTCTTCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 18 0.75
14 6 0.25
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
ATTTTAAATAATAA
Found at i:76320264 original size:23 final size:22
Alignment explanation
Indices: 76320235--76320284 Score: 77
Period size: 20 Copynumber: 2.3 Consensus size: 22
76320225 AATTTTAAAT
76320235 AATATTCTTCACATATTATTGAA
1 AATATT-TTCACATATTATTGAA
76320258 AATA--TTCACATATTATTGAA
1 AATATTTTCACATATTATTGAA
76320278 AATATTT
1 AATATTT
76320285 GTTAAACTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 20 0.80
22 1 0.04
23 4 0.16
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (22 bp):
AATATTTTCACATATTATTGAA
Found at i:76320267 original size:20 final size:20
Alignment explanation
Indices: 76320242--76320283 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
76320232 AATAATATTC
76320242 TTCACATATTATTGAAAATA
1 TTCACATATTATTGAAAATA
76320262 TTCACATATTATTGAAAATA
1 TTCACATATTATTGAAAATA
76320282 TT
1 TT
76320284 TGTTAAACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.10, G:0.05, T:0.43
Consensus pattern (20 bp):
TTCACATATTATTGAAAATA
Found at i:76325230 original size:46 final size:45
Alignment explanation
Indices: 76325081--76325371 Score: 169
Period size: 46 Copynumber: 6.2 Consensus size: 45
76325071 TGTATTAGCT
*
76325081 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AATATGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAA-ATG-AAGCC
* * * * * *
76325127 AGTGTAAGACCACGTCTGGGACATGGCATCGGCATCGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAAATGA-AGCC
* *
76325175 AATGTAAGACATGTCTGAGACATGCATCGGCCTCGAAATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAATG-AAGCC
** * ** * * * *
76325221 AGTACAAGACATGTCTCGGACATGCATC-TACTGTGAGATG-TGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAAATGAAGCC
* * * * *
76325265 AGT-TAAAACCATGTCTGGAACATGGCATCGGCACGGT-TATATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-C--TCGAAATGA-AGCC
* *
76325314 AGTGTAAGACCATGTCGGGGACATGGCATCGGCTTCGAAGATGATAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAA-ATGA-AGCC
76325363 AGTGTAAGA
1 AGTGTAAGA
76325372 TTATGTTTAG
Statistics
Matches: 183, Mismatches: 45, Indels: 31
0.71 0.17 0.12
Matches are distributed among these distances:
43 3 0.02
44 17 0.09
45 7 0.04
46 53 0.29
47 33 0.18
48 22 0.12
49 22 0.12
50 26 0.14
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAATGAAGCC
Found at i:76328482 original size:17 final size:17
Alignment explanation
Indices: 76328462--76328494 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
76328452 ATAAAGAATG
76328462 TTATTAAATAATATTTT
1 TTATTAAATAATATTTT
*
76328479 TTATTAAATTATATTT
1 TTATTAAATAATATTT
76328495 AATAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATTAAATAATATTTT
Found at i:76328761 original size:16 final size:16
Alignment explanation
Indices: 76328740--76328791 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
76328730 TGAATTACTT
*
76328740 ATTACATCTCTATTCA
1 ATTACAACTCTATTCA
76328756 ATTACAACTCTATTCA
1 ATTACAACTCTATTCA
* *
76328772 ATTACAACCCTATTCC
1 ATTACAACTCTATTCA
76328788 ATTA
1 ATTA
76328792 TAGTGAACCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.35, C:0.27, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTACAACTCTATTCA
Found at i:76335785 original size:50 final size:50
Alignment explanation
Indices: 76335531--76335847 Score: 230
Period size: 45 Copynumber: 6.7 Consensus size: 50
76335521 TGTATTAGCT
*
76335531 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CAT--AATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-TCGAAGATGAGAGCC
* * * * *
76335577 AGTGTAAGACCACGTCTGGGACGTGGCATCGGCA-TCG-AGACGAGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACTCGAAGATGAGAGCC
* *
76335625 AGTGTAAGA-CATGTCTGAGACAT--CATCGGC-CTCG-AGACGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACTCGAAGATG-AGAGCC
** * ** * *
76335670 AGTACAAGA-CATGTCTGGGACAT-GCATCAGCTGT-G-AGAT--GTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACTCGAAGATGAGAGCC
* * * *
76335714 AGTGTAAAACCATGTCTGGGACATGGCATCGGCACGGT-TATG-TGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC--TCGAAGATGAGAGCC
* *
76335764 AGTGTAAGACCATGT-TCGGGACATGGCATTGGC-CTCGAAGATGATAGCC
1 AGTGTAAGACCATGTCT-GGGACATGGCATCGGCACTCGAAGATGAGAGCC
*
76335813 AGTGTAAGACCATGTCTAGGACATGGCATCGGCAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
76335848 CTTACCCATG
Statistics
Matches: 211, Mismatches: 38, Indels: 40
0.73 0.13 0.14
Matches are distributed among these distances:
44 8 0.04
45 51 0.24
46 27 0.13
47 26 0.12
48 28 0.13
49 38 0.18
50 33 0.16
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACTCGAAGATGAGAGCC
Found at i:76340109 original size:38 final size:38
Alignment explanation
Indices: 76340067--76340176 Score: 105
Period size: 38 Copynumber: 2.9 Consensus size: 38
76340057 ACGTAAAGCG
* *
76340067 CATCCTGACGCATAAAGCGCATACTGGCACATGAAGTA
1 CATCCTGACGCATAAAGTGCATACTGGCACATGAAATA
** * * ** *
76340105 CATCCTGAAACACAAAGTGCATCCTGGCACACAAAATG
1 CATCCTGACGCATAAAGTGCATACTGGCACATGAAATA
*
76340143 CAT-CTTAGCGCATAAAGTGCATATCTGGCACATG
1 CATCCTGA-CGCATAAAGTGCATA-CTGGCACATG
76340177 GACTGCATCT
Statistics
Matches: 54, Mismatches: 16, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
37 3 0.06
38 43 0.80
39 8 0.15
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (38 bp):
CATCCTGACGCATAAAGTGCATACTGGCACATGAAATA
Found at i:76340127 original size:19 final size:19
Alignment explanation
Indices: 76340100--76340146 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
76340090 CTGGCACATG
*
76340100 AAGTACATCCTGAAACACA
1 AAGTGCATCCTGAAACACA
**
76340119 AAGTGCATCCTGGCACACA
1 AAGTGCATCCTGAAACACA
*
76340138 AAATGCATC
1 AAGTGCATC
76340147 TTAGCGCATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.40, C:0.28, G:0.15, T:0.17
Consensus pattern (19 bp):
AAGTGCATCCTGAAACACA
Found at i:76340163 original size:19 final size:19
Alignment explanation
Indices: 76340114--76340206 Score: 60
Period size: 19 Copynumber: 4.8 Consensus size: 19
76340104 ACATCCTGAA
*
76340114 ACACAAAGTGCATCCTGGC
1 ACACAAAGTGCATCCTAGC
* *
76340133 ACACAAAATGCATCTTAGC
1 ACACAAAGTGCATCCTAGC
* * * *
76340152 GCATAAAGTGCATATCTGGC
1 ACACAAAGTGCAT-CCTAGC
*** * * *
76340172 ACATGGACTGCATCTTAAC
1 ACACAAAGTGCATCCTAGC
76340191 ACACAAAGTGCATCCT
1 ACACAAAGTGCATCCT
76340207 GGCGCACGAA
Statistics
Matches: 51, Mismatches: 22, Indels: 2
0.68 0.29 0.03
Matches are distributed among these distances:
19 39 0.76
20 12 0.24
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (19 bp):
ACACAAAGTGCATCCTAGC
Found at i:76340252 original size:58 final size:58
Alignment explanation
Indices: 76340119--76340261 Score: 144
Period size: 58 Copynumber: 2.5 Consensus size: 58
76340109 CTGAAACACA
* * * * * * *
76340119 AAGTGCATCCTGGCACACAAAATGCATCTTAGCGCATAAAGTGCATATCTGGCACATG
1 AAGTGCATCCTGGCACACAAAGTGCATCCTAGCGCACAAAGCGCATATATGGAAAATG
* * * ** * *
76340177 GACTGCATCTTAACACACAAAGTGCATCCTGGCGCACGAAGCGCATATATGGAAAATG
1 AAGTGCATCCTGGCACACAAAGTGCATCCTAGCGCACAAAGCGCATATATGGAAAATG
*
76340235 AAGTGCATCCTGGCACAC-AGGTGCATC
1 AAGTGCATCCTGGCACACAAAGTGCATC
76340262 TTGGGGCATA
Statistics
Matches: 65, Mismatches: 20, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
57 8 0.12
58 57 0.88
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.20
Consensus pattern (58 bp):
AAGTGCATCCTGGCACACAAAGTGCATCCTAGCGCACAAAGCGCATATATGGAAAATG
Found at i:76341529 original size:30 final size:30
Alignment explanation
Indices: 76341495--76341554 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
76341485 TCCATTTCTT
*
76341495 CTAGATTGATA-CTTAACGTTTTTTTTTGTC
1 CTAGATTGATACCTTAAC-TTTTTTTCTGTC
*
76341525 CTAGATTGGTACCTTAACTTTTTTTCTGTC
1 CTAGATTGATACCTTAACTTTTTTTCTGTC
76341555 AACTAAATCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.52
Consensus pattern (30 bp):
CTAGATTGATACCTTAACTTTTTTTCTGTC
Found at i:76341568 original size:32 final size:31
Alignment explanation
Indices: 76341506--76341568 Score: 74
Period size: 30 Copynumber: 2.0 Consensus size: 31
76341496 TAGATTGATA
* * *
76341506 CTTAACGTTTTTTTTTGTCCTAGATTGGTAC
1 CTTAACGTTTTTTTCTGTCCTAAATCGGTAC
76341537 CTTAAC-TTTTTTTCTGTCAACTAAATCGGTAC
1 CTTAACGTTTTTTTCTGTC--CTAAATCGGTAC
76341569 TTTTTGTAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 11 0.41
31 6 0.22
32 10 0.37
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.48
Consensus pattern (31 bp):
CTTAACGTTTTTTTCTGTCCTAAATCGGTAC
Found at i:76341693 original size:32 final size:33
Alignment explanation
Indices: 76341642--76341704 Score: 85
Period size: 32 Copynumber: 1.9 Consensus size: 33
76341632 GATGTCATAA
*
76341642 TTTTAAAAATTATATTAAAAATAATAAAAATATT
1 TTTTAAAAATTATAATAAAAATAA-AAAAATATT
*
76341676 TTTTAAAAA-TA-AATAAAAATTAAAAAATA
1 TTTTAAAAATTATAATAAAAATAAAAAAATA
76341705 ATAAACTAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 7 0.26
32 9 0.33
33 2 0.07
34 9 0.33
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (33 bp):
TTTTAAAAATTATAATAAAAATAAAAAAATATT
Found at i:76342749 original size:17 final size:17
Alignment explanation
Indices: 76342709--76342758 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
76342699 TGGTTAGGGT
* *
76342709 ATGAATAGAAGATTAAAA
1 ATGAAAAGAA-ATAAAAA
*
76342727 AGGAAAAGAAATAAAAA
1 ATGAAAAGAAATAAAAA
76342744 ATGAAAAGAAA-AAAA
1 ATGAAAAGAAATAAAA
76342759 TTAATAAAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 4 0.14
17 16 0.57
18 8 0.29
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (17 bp):
ATGAAAAGAAATAAAAA
Found at i:76345808 original size:19 final size:18
Alignment explanation
Indices: 76345786--76345827 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
76345776 ACCGTGATAT
76345786 TTTAAG-AAAATAGTTCGTG
1 TTTAAGAAAAAT-GTT-GTG
*
76345805 TTTAGGAAAAATGTTGTG
1 TTTAAGAAAAATGTTGTG
76345823 TTTAA
1 TTTAA
76345828 TAATAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 7 0.35
19 8 0.40
20 5 0.25
ACGTcount: A:0.36, C:0.02, G:0.21, T:0.40
Consensus pattern (18 bp):
TTTAAGAAAAATGTTGTG
Found at i:76348209 original size:25 final size:24
Alignment explanation
Indices: 76348173--76348225 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
76348163 CACAAAAGTA
76348173 GCTCTTTATGAGCGTCCTGATATAG
1 GCTCTTTATGAGCGTCCTGATAT-G
* * *
76348198 GCTCTTTTTGAGCTTCTTGATATG
1 GCTCTTTATGAGCGTCCTGATATG
76348222 GCTC
1 GCTC
76348226 GCTTAAACTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.42
Consensus pattern (24 bp):
GCTCTTTATGAGCGTCCTGATATG
Found at i:76350745 original size:18 final size:19
Alignment explanation
Indices: 76350710--76350747 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
76350700 AATAAATTTC
*
76350710 AAAAATTCAAAATGTTTATA
1 AAAAAATCAAAA-GTTTATA
76350730 AAAAAATCAAAA-TTTATA
1 AAAAAATCAAAAGTTTATA
76350748 TTTTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.32
Consensus pattern (19 bp):
AAAAAATCAAAAGTTTATA
Found at i:76350999 original size:14 final size:14
Alignment explanation
Indices: 76350980--76351006 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
76350970 TAATTTTTTT
76350980 TAATTTAACTCGAA
1 TAATTTAACTCGAA
76350994 TAATTTAACTCGA
1 TAATTTAACTCGA
76351007 TTCGATTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (14 bp):
TAATTTAACTCGAA
Found at i:76351889 original size:40 final size:40
Alignment explanation
Indices: 76351840--76351915 Score: 143
Period size: 40 Copynumber: 1.9 Consensus size: 40
76351830 TCTTTCTGCA
76351840 AATCTCATTCCTCCCTTTCTCTCTTTCTCAGGCAAAGGCC
1 AATCTCATTCCTCCCTTTCTCTCTTTCTCAGGCAAAGGCC
*
76351880 AATCTCATTCCTCTCTTTCTCTCTTTCTCAGGCAAA
1 AATCTCATTCCTCCCTTTCTCTCTTTCTCAGGCAAA
76351916 TCTCATTCCT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.18, C:0.36, G:0.08, T:0.38
Consensus pattern (40 bp):
AATCTCATTCCTCCCTTTCTCTCTTTCTCAGGCAAAGGCC
Found at i:76351918 original size:34 final size:34
Alignment explanation
Indices: 76351819--76351927 Score: 125
Period size: 40 Copynumber: 3.1 Consensus size: 34
76351809 CATCTTCTTT
*
76351819 CTCTCTCTCTCTCTTTCT---GCAAATCTCATTC
1 CTCTCTTTCTCTCTTTCTCAGGCAAATCTCATTC
*
76351850 CTCCCTTTCTCTCTTTCTCAGGCAAAGGCCAATCTCATTC
1 CTCTCTTTCTCTCTTTCTCAGGC--A----AATCTCATTC
76351890 CTCTCTTTCTCTCTTTCTCAGGCAAATCTCATTC
1 CTCTCTTTCTCTCTTTCTCAGGCAAATCTCATTC
76351924 CTCT
1 CTCT
76351928 TCGCAAGGTC
Statistics
Matches: 66, Mismatches: 3, Indels: 15
0.79 0.04 0.18
Matches are distributed among these distances:
31 16 0.24
34 16 0.24
36 1 0.02
38 1 0.02
40 32 0.48
ACGTcount: A:0.15, C:0.38, G:0.06, T:0.41
Consensus pattern (34 bp):
CTCTCTTTCTCTCTTTCTCAGGCAAATCTCATTC
Found at i:76355376 original size:18 final size:18
Alignment explanation
Indices: 76355355--76355397 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
76355345 ATAATTTAAA
76355355 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
76355373 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
*
76355391 ATGTAAA
1 ATATAAA
76355398 AATAGTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:76355512 original size:13 final size:14
Alignment explanation
Indices: 76355483--76355520 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
76355473 CTAAAAAAAT
76355483 AAATTATTTTTCAA
1 AAATTATTTTTCAA
*
76355497 AAATTATTTTTTAA
1 AAATTATTTTTCAA
*
76355511 AAAATATTTT
1 AAATTATTTT
76355521 ATTAACAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (14 bp):
AAATTATTTTTCAA
Found at i:76355513 original size:15 final size:15
Alignment explanation
Indices: 76355483--76355525 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
76355473 CTAAAAAAAT
*
76355483 AAATTA-TTTTTCAA
1 AAATTATTTTTTAAA
76355497 AAATTATTTTTTAAA
1 AAATTATTTTTTAAA
76355512 AAA-TATTTTATTAA
1 AAATTATTTT-TTAA
76355526 CAAACAAACG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 12 0.46
15 14 0.54
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (15 bp):
AAATTATTTTTTAAA
Found at i:76359852 original size:15 final size:16
Alignment explanation
Indices: 76359824--76359853 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
76359814 TCGGGATATT
76359824 ATTATTAGAAAAATAA
1 ATTATTAGAAAAATAA
76359840 ATTATTA-AAAAATA
1 ATTATTAGAAAAATA
76359854 TAAATAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (16 bp):
ATTATTAGAAAAATAA
Found at i:76359858 original size:17 final size:16
Alignment explanation
Indices: 76359824--76359858 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
76359814 TCGGGATATT
*
76359824 ATTATTAGAAAAATAA
1 ATTATTAAAAAAATAA
76359840 ATTATTAAAAAATATAA
1 ATTATTAAAAAA-ATAA
76359857 AT
1 AT
76359859 AAAGAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (16 bp):
ATTATTAAAAAAATAA
Found at i:76362746 original size:26 final size:26
Alignment explanation
Indices: 76362613--76362764 Score: 89
Period size: 26 Copynumber: 5.9 Consensus size: 26
76362603 AGTTTTGTTT
* *
76362613 ATATTACTTATTTTAAACTATTCTA-
1 ATATTACTTATTTTAAATTATTTTAC
* * * *
76362638 TTATTATTTACTTTAAGTT-TTTTAC
1 ATATTACTTATTTTAAATTATTTTAC
* *
76362663 ATATTA-TGTATTTTAAATCATTTTAA
1 ATATTACT-TATTTTAAATTATTTTAC
** * *
76362689 ACTATTACCCATTTTAAATT-TGTATAT
1 A-TATTACTTATTTTAAATTAT-TTTAC
*
76362716 ATATTAGTTATTTTAAATTATTTTAC
1 ATATTACTTATTTTAAATTATTTTAC
* * * *
76362742 GTATTATTTACTTTCAA-TATTTT
1 ATATTACTTATTTTAAATTATTTT
76362765 TTATTTATCT
Statistics
Matches: 95, Mismatches: 25, Indels: 14
0.71 0.19 0.10
Matches are distributed among these distances:
24 5 0.05
25 33 0.35
26 38 0.40
27 19 0.20
ACGTcount: A:0.32, C:0.09, G:0.03, T:0.56
Consensus pattern (26 bp):
ATATTACTTATTTTAAATTATTTTAC
Found at i:76362861 original size:21 final size:21
Alignment explanation
Indices: 76362837--76362884 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
76362827 CTTAAAAACG
76362837 TATTTTATTATATATCTTTGT
1 TATTTTATTATATATCTTTGT
76362858 TATTTTATTATATATCTTTGT
1 TATTTTATTATATATCTTTGT
76362879 T-TTTTA
1 TATTTTA
76362885 AGACTATTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 5 0.19
21 22 0.81
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.69
Consensus pattern (21 bp):
TATTTTATTATATATCTTTGT
Found at i:76365185 original size:40 final size:40
Alignment explanation
Indices: 76365100--76365250 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
76365090 AATTGAATGA
* * *
76365100 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
76365140 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
76365181 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
76365220 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
76365251 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:76365264 original size:40 final size:40
Alignment explanation
Indices: 76365137--76365266 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
76365127 ATGCTGGAAA
* * * *
76365137 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
76365177 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
76365217 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
76365257 TTATATCCGG
1 TTATATCCGG
76365267 TTATGTTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:76366998 original size:127 final size:127
Alignment explanation
Indices: 76366809--76367045 Score: 316
Period size: 127 Copynumber: 1.9 Consensus size: 127
76366799 GTCGACTTTA
* * * * * *
76366809 TAAAACAAAGGCGATGTTTGATGTTTAGAAATTTGAGGGATCGTGTCCTAACGTGTTGGGTTTCA
1 TAAAACAAAAGCGATGATTGATGTTTAGAAATTTGAGGAATCGTGCCCTAACGTGCTAGGTTTCA
** *
76366874 ATCTTT-TGTTTATTTAAATAATCAAATTTCCCTTTAAAATCCCGTTCGTGTTTTCTAAACTT
66 AT-TTTCTGTTTATCCAAATAATCAAATATCCCTTTAAAATCCCGTTCGTGTTTTCTAAACTT
* * *
76366936 TAAAACAAAAGCGATGATTGATGTTTGGGAATTTG-GGAAATCGTGCCCTAATGTGCTAGGTTTC
1 TAAAACAAAAGCGATGATTGATGTTTAGAAATTTGAGG-AATCGTGCCCTAACGTGCTAGGTTTC
* *
76367000 GATTTTCTGTTTATCCAAATAATCAAATATCCCTTTAAAATTCCGT
65 AATTTTCTGTTTATCCAAATAATCAAATATCCCTTTAAAATCCCGT
76367046 CTACGTTTTT
Statistics
Matches: 94, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
126 5 0.05
127 89 0.95
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (127 bp):
TAAAACAAAAGCGATGATTGATGTTTAGAAATTTGAGGAATCGTGCCCTAACGTGCTAGGTTTCA
ATTTTCTGTTTATCCAAATAATCAAATATCCCTTTAAAATCCCGTTCGTGTTTTCTAAACTT
Found at i:76367975 original size:20 final size:19
Alignment explanation
Indices: 76367950--76367987 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
76367940 AAAATTTAAA
*
76367950 TTTAAATATATAAACTATAT
1 TTTAAATAT-TAAAATATAT
76367970 TTTAAATATTAAAATATA
1 TTTAAATATTAAAATATA
76367988 ACCAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (19 bp):
TTTAAATATTAAAATATAT
Found at i:76375780 original size:58 final size:58
Alignment explanation
Indices: 76375718--76375842 Score: 150
Period size: 57 Copynumber: 2.2 Consensus size: 58
76375708 AGCCCAGATG
* * *
76375718 GGTAATCCTGATTTAATCCC-TCTCGAGCATATGTTA-A-AATTAGGATTTAGCTTGGATT
1 GGTAATCCTGAATTAAGCCCTTCT-GAGCATATGTTACATAA--AGGATTTAGCTTGGACT
* *
76375776 GGTAATCCT-AATTGAGCTCTTCTGAGCATATGTTACATAAAGGATTTAGCTTGGACT
1 GGTAATCCTGAATTAAGCCCTTCTGAGCATATGTTACATAAAGGATTTAGCTTGGACT
76375833 GGTAATCCTG
1 GGTAATCCTG
76375843 TAATATGATA
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
57 43 0.74
58 13 0.22
59 2 0.03
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (58 bp):
GGTAATCCTGAATTAAGCCCTTCTGAGCATATGTTACATAAAGGATTTAGCTTGGACT
Found at i:76377364 original size:52 final size:51
Alignment explanation
Indices: 76377216--76377367 Score: 180
Period size: 52 Copynumber: 2.9 Consensus size: 51
76377206 GTAACATACT
* *
76377216 GATGCCATATCCCAGATATGGTCTTATACGGAATCACATTATCACATCACACC
1 GATGCCATAGCCCAGCTATGGTCTTATACGGAA-CACA-TATCACATCACACC
* * ***
76377269 GATGCCATAGCCCAACTATGGTCTTATACGGGAACTCGA-ATCACATTGTACC
1 GATGCCATAGCCCAGCTATGGTCTTATAC-GGAACAC-ATATCACATCACACC
*
76377321 GATGCCATAGCCCAGCTATGGTCTTATATGGAAGCACATATCACATC
1 GATGCCATAGCCCAGCTATGGTCTTATACGGAA-CACATATCACATC
76377368 TTTTCCGTCA
Statistics
Matches: 84, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
51 5 0.06
52 46 0.55
53 28 0.33
54 5 0.06
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (51 bp):
GATGCCATAGCCCAGCTATGGTCTTATACGGAACACATATCACATCACACC
Found at i:76383439 original size:20 final size:20
Alignment explanation
Indices: 76383410--76383448 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
76383400 TTTTGAAACA
76383410 GGGCACATGCC-GTGTGGAT
1 GGGCACATGCCAGTGTGGAT
76383429 GGGCAACATGCCAGTGTGGA
1 GGGC-ACATGCCAGTGTGGA
76383449 ACTTGAACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 7 0.39
21 7 0.39
ACGTcount: A:0.21, C:0.21, G:0.41, T:0.18
Consensus pattern (20 bp):
GGGCACATGCCAGTGTGGAT
Found at i:76383630 original size:41 final size:41
Alignment explanation
Indices: 76383565--76383643 Score: 124
Period size: 41 Copynumber: 1.9 Consensus size: 41
76383555 ACAGGGGTTT
76383565 TCACACGGCCTAGCACACACCCGTGTCTAAGGCCCGTGTCCG
1 TCACACGGCCTAGCACACACCCGTGTCTAA-GCCCGTGTCCG
* *
76383607 TCACACGGCCTTG-ACACACCCGTGTCTCAGCCCGTGT
1 TCACACGGCCTAGCACACACCCGTGTCTAAGCCCGTGT
76383644 TTGAAAATCT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 8 0.23
41 15 0.43
42 12 0.34
ACGTcount: A:0.18, C:0.41, G:0.23, T:0.19
Consensus pattern (41 bp):
TCACACGGCCTAGCACACACCCGTGTCTAAGCCCGTGTCCG
Found at i:76384682 original size:47 final size:47
Alignment explanation
Indices: 76384613--76384884 Score: 202
Period size: 47 Copynumber: 5.7 Consensus size: 47
76384603 TATAATGCTA
*
76384613 ATGCCATGTCTCAGACATGGTCTTACACTGGCTCATCCATCAAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCG
* * *
76384660 ATGCCATGTCCCAGACATGGTCTTACATTGACT-ATCGAAATCAACGGT-G
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC--CATCAA--GTCG
* * * *
76384709 ACGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATATCCATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-C--AT-CAAGTCG
* * * * * ** *
76384759 ATGCCATGGCCCAAACATAGTCTTACATTGACAGAT-C-TCGTAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATC-AAGTCG
* *
76384805 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-T-CATCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCA--TCAA-GTCG
*
76384851 ATGCCATGTCCCAGACATGGTCTTATACTGGCTC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC
76384885 TCGTAATATG
Statistics
Matches: 174, Mismatches: 34, Indels: 33
0.72 0.14 0.14
Matches are distributed among these distances:
43 2 0.01
44 10 0.06
45 14 0.08
46 18 0.10
47 44 0.25
48 19 0.11
49 34 0.20
50 30 0.17
51 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCG
Found at i:76384902 original size:94 final size:93
Alignment explanation
Indices: 76384617--76384928 Score: 291
Period size: 94 Copynumber: 3.3 Consensus size: 93
76384607 ATGCTAATGC
* * *
76384617 CATGTCTCAGACATGGTCTTACACT-G-GCTCATCCATCAA-GTCGATGCCATGTCCCAGACATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCAT-C-TCAATGCCGATGCCATGTCCCAGACATG
* * *
76384679 GTCTTACATTGACTATCGAAATCAACGG-TGACG
64 GTCTTACATTGGCTCTCG-AAT--A-GGCTGATG
* * * *
76384712 CCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCATGCCGATGCCATGGCCCAAACAT
1 -CATGTCCCAGACATGGTCTTACACTAGCTCT--CATCTCAATGCCGATGCCATGTCCCAGACAT
* * *
76384777 AGTCTTACATTGACAGATCTCG--TAGTC-GATG
63 GGTCTTACATTG---GCTCTCGAATAGGCTGATG
76384808 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGACATGGT
* *
76384872 CTTATACTGGCTCTCGTAATATGGCTGATG
66 CTTACATTGGCTCTCG-AATA-GGCTGATG
*
76384902 CATGTTCCAGACAT-GTCTTACACTAGC
1 CATGTCCCAGACATGGTCTTACACTAGC
76384929 ACATAAATAA
Statistics
Matches: 179, Mismatches: 23, Indels: 30
0.77 0.10 0.13
Matches are distributed among these distances:
89 6 0.03
92 38 0.21
93 2 0.01
94 46 0.26
95 14 0.08
96 28 0.16
97 2 0.01
98 5 0.03
99 31 0.17
100 3 0.02
102 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (93 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGACATGGT
CTTACATTGGCTCTCGAATAGGCTGATG
Found at i:76384906 original size:47 final size:45
Alignment explanation
Indices: 76384713--76384928 Score: 154
Period size: 47 Copynumber: 4.6 Consensus size: 45
76384703 ACGGTGACGC
*
76384713 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCATGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCT--CATAT-AATGCCGATG
* * * * * *
76384762 CCATGGCCCAAACATAGTCTTACATTGACAGATCTC--GT-A-GTCGATG
1 -CATGTCCCAGACAT-GTCTTACACT---AGCTCTCATATAATGCCGATG
*
76384808 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATAT-AATGCCGATG
* * * *
76384854 CCATGTCCCAGACATGGTCTTATACTGGCTCTCGTA-ATATGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTCATATA-AT-GCCGATG
*
76384902 CATGTTCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
76384929 ACATAAATAA
Statistics
Matches: 133, Mismatches: 21, Indels: 28
0.73 0.12 0.15
Matches are distributed among these distances:
41 6 0.05
43 1 0.01
44 9 0.07
45 13 0.10
46 24 0.18
47 30 0.23
48 22 0.17
49 1 0.01
50 21 0.16
51 1 0.01
53 5 0.04
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATATAATGCCGATG
Found at i:76386343 original size:20 final size:20
Alignment explanation
Indices: 76386318--76386359 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
76386308 TAGAAAATAT
*
76386318 AGTAGTCATACTTGCTGAAA
1 AGTAGTCATACTTGCCGAAA
76386338 AGTAGTCATACTTGCCGAAA
1 AGTAGTCATACTTGCCGAAA
76386358 AG
1 AG
76386360 AGTATTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (20 bp):
AGTAGTCATACTTGCCGAAA
Found at i:76387800 original size:32 final size:32
Alignment explanation
Indices: 76387753--76387814 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
76387743 GCCTTTCAAG
* *
76387753 CCTACCGTATTAAGAATTATCCCTTAAAAACT
1 CCTACCATATGAAGAATTATCCCTTAAAAACT
76387785 CCTACCATATGAAGAATTATCCCTTAAAAA
1 CCTACCATATGAAGAATTATCCCTTAAAAA
76387815 TTTACTTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.40, C:0.24, G:0.06, T:0.29
Consensus pattern (32 bp):
CCTACCATATGAAGAATTATCCCTTAAAAACT
Found at i:76388896 original size:29 final size:29
Alignment explanation
Indices: 76388863--76388922 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
76388853 AACATTGGGA
76388863 TGTCCTAAATAATTATTAAAATTATTTTT
1 TGTCCTAAATAATTATTAAAATTATTTTT
76388892 TGTCCTAAATAATTATTAAAATTATTTTT
1 TGTCCTAAATAATTATTAAAATTATTTTT
76388921 TG
1 TG
76388923 GACTCTCAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.52
Consensus pattern (29 bp):
TGTCCTAAATAATTATTAAAATTATTTTT
Found at i:76394728 original size:43 final size:43
Alignment explanation
Indices: 76394663--76394766 Score: 172
Period size: 43 Copynumber: 2.4 Consensus size: 43
76394653 TTTGAAAAAG
* *
76394663 CGCCGCTAAAGATCATGGCCTTTAGCGGCGCTTTTACCACAAA
1 CGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTACCACAAA
* *
76394706 CGCCGCTAAAGGCCATGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTACCACAAA
76394749 CGCCGCTAAAGGTCATGA
1 CGCCGCTAAAGGTCATGA
76394767 AATTCAAAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.21
Consensus pattern (43 bp):
CGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTACCACAAA
Found at i:76395052 original size:18 final size:19
Alignment explanation
Indices: 76395015--76395055 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
76395005 ATTTAGAGTC
76395015 AAAACTAAAATAAATAATA
1 AAAACTAAAATAAATAATA
* *
76395034 AAAACTAGATTAAAT-ATA
1 AAAACTAAAATAAATAATA
76395052 AAAA
1 AAAA
76395056 TATCAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (19 bp):
AAAACTAAAATAAATAATA
Found at i:76395057 original size:31 final size:31
Alignment explanation
Indices: 76394981--76395054 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
76394971 TCAAGTTATC
*
76394981 TTAAATATTAAAATAAAAATAAAAATTTAGAG
1 TTAAATA-TAAAATAAAAATAAAAATCTAGAG
*
76395013 TCAAA-ACTAAAATAAATAATAAAAA-CTAGA-
1 TTAAATA-TAAAATAAA-AATAAAAATCTAGAG
76395043 TTAAATATAAAA
1 TTAAATATAAAA
76395055 ATATCAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
30 9 0.25
31 15 0.42
32 12 0.33
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (31 bp):
TTAAATATAAAATAAAAATAAAAATCTAGAG
Found at i:76400514 original size:22 final size:20
Alignment explanation
Indices: 76400462--76400531 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 20
76400452 CCCTGTCCCA
76400462 TAAACCCTAAACCCTAAACCTT
1 TAAACCC-AAACCCTAAACC-T
* *
76400484 TAACCCCAAACCCTTACACCT
1 TAAACCCAAACCC-TAAACCT
* *
76400505 TAAACTCC-AACACTAACCCT
1 TAAAC-CCAAACCCTAAACCT
76400525 TAAACCC
1 TAAACCC
76400532 TAAATTATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
19 2 0.05
20 10 0.25
21 15 0.38
22 13 0.32
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (20 bp):
TAAACCCAAACCCTAAACCT
Found at i:76400602 original size:7 final size:7
Alignment explanation
Indices: 76400590--76400689 Score: 56
Period size: 7 Copynumber: 13.7 Consensus size: 7
76400580 AGTTAACTCC
76400590 TAAACCT
1 TAAACCT
76400597 TAAACCT
1 TAAACCT
*
76400604 TAAACCC
1 TAAACCT
* *
76400611 TAAATCA
1 TAAACCT
* *
76400618 TATATCT
1 TAAACCT
76400625 TAAACCAT
1 TAAACC-T
* *
76400633 AGTTAACTCC
1 --TAAAC-CT
76400643 TAAACCT
1 TAAACCT
*
76400650 TAAACCC
1 TAAACCT
* *
76400657 TAAATCA
1 TAAACCT
*
76400664 TATACCT
1 TAAACCT
*
76400671 TAAACCA
1 TAAACCT
76400678 TAAACCT
1 TAAACCT
76400685 TAAAC
1 TAAAC
76400690 TATAATGATA
Statistics
Matches: 69, Mismatches: 20, Indels: 8
0.71 0.21 0.08
Matches are distributed among these distances:
7 59 0.86
8 5 0.07
10 4 0.06
11 1 0.01
ACGTcount: A:0.44, C:0.27, G:0.01, T:0.28
Consensus pattern (7 bp):
TAAACCT
Found at i:76400607 original size:14 final size:14
Alignment explanation
Indices: 76400590--76400694 Score: 75
Period size: 14 Copynumber: 7.2 Consensus size: 14
76400580 AGTTAACTCC
*
76400590 TAAACCTTAAACCT
1 TAAACCTTAAACCA
* *
76400604 TAAACCCTAAATCA
1 TAAACCTTAAACCA
* *
76400618 TATATCTTAAACCA
1 TAAACCTTAAACCA
* *
76400632 TAGTTAACTCCTAAACCT
1 TA---AAC-CTTAAACCA
* *
76400650 TAAACCCTAAATCA
1 TAAACCTTAAACCA
*
76400664 TATACCTTAAACCA
1 TAAACCTTAAACCA
*
76400678 TAAACCTTAAACTA
1 TAAACCTTAAACCA
76400692 TAA
1 TAA
76400695 TGATAATTAA
Statistics
Matches: 69, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
14 56 0.81
15 3 0.04
17 1 0.01
18 9 0.13
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.29
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:76400682 original size:53 final size:53
Alignment explanation
Indices: 76400579--76400683 Score: 129
Period size: 53 Copynumber: 2.0 Consensus size: 53
76400569 CTTCAAATAC
* * * * * *
76400579 TAGTTAACTCCTAAACCTTAAACCTTAAACCCTAAATCATATATCTTAAACCA
1 TAGTTAACTCCTAAACCTTAAACCCTAAACCATAAACCATAAACCATAAACCA
* * *
76400632 TAGTTAACTCCTAAACCTTAAACCCTAAATCATATACCTTAAACCATAAACC
1 TAGTTAACTCCTAAACCTTAAACCCTAAACCATAAACCATAAACCATAAACC
76400684 TTAAACTATA
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.42, C:0.28, G:0.02, T:0.29
Consensus pattern (53 bp):
TAGTTAACTCCTAAACCTTAAACCCTAAACCATAAACCATAAACCATAAACCA
Found at i:76400929 original size:42 final size:41
Alignment explanation
Indices: 76400852--76401147 Score: 427
Period size: 41 Copynumber: 7.2 Consensus size: 41
76400842 GTTATATGAC
* *
76400852 TTTTAGCGGCATTTTACCAAAAGCGCCCCTAATGCTCTAGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCCCTAATGCTCTGGT
76400893 TTTTAGCGGCGTTTTACCAAAAAGCGCCCCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACC-AAAAGCGCCCCTAATGCTCTGGT
*
76400935 TTTTAGCGGCGTTTTACCAAAAAACGCCCCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACC-AAAAGCGCCCCTAATGCTCTGGT
* *
76400977 TTTTAGCGGCATTTTATCAAAAGCGCCGCC-AATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCC-CCTAATGCTCTGGT
* * *
76401018 TTTTTGCGGCATTTTATCAAAAGCGCCGCC-AATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCC-CCTAATGCTCTGGT
* *
76401059 TTTTTGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCCCTAATGCTCTGGT
* *
76401100 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCCCTAATGCTCTGGT
76401140 TTTTAGCG
1 TTTTAGCG
76401148 CGCTTTTGGT
Statistics
Matches: 239, Mismatches: 13, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
40 10 0.04
41 148 0.62
42 81 0.34
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCCCTAATGCTCTGGT
Found at i:76401274 original size:14 final size:14
Alignment explanation
Indices: 76401254--76401289 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
76401244 GCTTTAACAC
76401254 AAAAAATAATAAAT
1 AAAAAATAATAAAT
* *
76401268 TAAAAATAATAACT
1 AAAAAATAATAAAT
76401282 AAAAAATA
1 AAAAAATA
76401290 CATCTCAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (14 bp):
AAAAAATAATAAAT
Found at i:76406081 original size:39 final size:39
Alignment explanation
Indices: 76406028--76406135 Score: 153
Period size: 39 Copynumber: 2.8 Consensus size: 39
76406018 GGACTTTTGC
* * *
76406028 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
*
76406067 CCGGTTATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
* **
76406106 CTGGATATAATTCCAGCTTATAGCCTGCGG
1 CCGGATATAATTCCAGCACATAGCCTGCGG
76406136 GTCTTTAAGC
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 61 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
Done.