Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 248 of 410
Found at i:76734797 original size:33 final size:33
Alignment explanation
Indices: 76734755--76734821 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
76734745 TATAGGAGAA
*
76734755 ATCACATGTGAAGGGTCTAATCAATACCGTCGT
1 ATCACATGTGAAGGGTCCAATCAATACCGTCGT
*
76734788 ATCACATGTGAAGGGTCCGATCAATACCGTCGT
1 ATCACATGTGAAGGGTCCAATCAATACCGTCGT
76734821 A
1 A
76734822 ACATCAATAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (33 bp):
ATCACATGTGAAGGGTCCAATCAATACCGTCGT
Found at i:76737543 original size:49 final size:49
Alignment explanation
Indices: 76737414--76737650 Score: 367
Period size: 49 Copynumber: 4.9 Consensus size: 49
76737404 GCCTTCGGGA
* *
76737414 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76737461 CCTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76737508 CTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76737557 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76737606 CTTATCACATATATACACACTTTCACA-TCATCACATCGGCCATTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
76737651 TTCACATTCA
Statistics
Matches: 175, Mismatches: 11, Indels: 7
0.91 0.06 0.04
Matches are distributed among these distances:
46 1 0.01
47 47 0.27
48 18 0.10
49 109 0.62
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76737661 original size:73 final size:74
Alignment explanation
Indices: 76737578--76737724 Score: 287
Period size: 73 Copynumber: 2.0 Consensus size: 74
76737568 TATACACACT
76737578 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACA-TCATCACAT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACAT
76737642 CGGCCATTA
66 CGGCCATTA
76737651 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACAT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACAT
76737716 CGGCCATTA
66 CGGCCATTA
76737725 GGCCTTATCA
Statistics
Matches: 73, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
73 55 0.75
74 18 0.25
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (74 bp):
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACAT
CGGCCATTA
Found at i:76737664 original size:25 final size:24
Alignment explanation
Indices: 76737627--76737675 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 24
76737617 TATACACACT
76737627 TTCACATCATCACATCGGCCATTA
1 TTCACATCATCACATCGGCCATTA
76737651 TTCACATTCATCACATCGGCCATTA
1 TTCACA-TCATCACATCGGCCATTA
76737676 GGCCTTATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.29, C:0.33, G:0.08, T:0.31
Consensus pattern (24 bp):
TTCACATCATCACATCGGCCATTA
Found at i:76741444 original size:40 final size:40
Alignment explanation
Indices: 76741387--76741667 Score: 501
Period size: 40 Copynumber: 7.0 Consensus size: 40
76741377 CGAATACACG
* * *
76741387 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
76741427 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
76741467 TCACTAGCATGAATGCTCTTCGGGAATTAGCCCAGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
76741507 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
76741547 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
76741587 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
76741627 TCACTAGCATGAATGATCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
76741666 TC
1 TC
76741668 GTCGAGACTT
Statistics
Matches: 233, Mismatches: 8, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
39 4 0.02
40 229 0.98
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:76741790 original size:38 final size:38
Alignment explanation
Indices: 76741721--76741795 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 38
76741711 GAATTTTAAT
*
76741721 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* * * *
76741759 CCGGACATAATTTCT-TCATATAGTCAGCGGGTTTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
76741796 AACTCGGATT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 1 0.03
38 30 0.97
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:76744088 original size:49 final size:49
Alignment explanation
Indices: 76743959--76744196 Score: 376
Period size: 49 Copynumber: 4.9 Consensus size: 49
76743949 CCCTTCGGGA
* *
76743959 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76744006 CCTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76744053 CTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76744102 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76744151 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
76744197 TTCACATTCA
Statistics
Matches: 176, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.01
47 47 0.27
49 128 0.73
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76744203 original size:25 final size:25
Alignment explanation
Indices: 76744172--76744221 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
76744162 TATACACACT
76744172 TTCACATTCATCACATCGGCCATTA
1 TTCACATTCATCACATCGGCCATTA
76744197 TTCACATTCATCACATCGGCCATTA
1 TTCACATTCATCACATCGGCCATTA
76744222 GGCCTTATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.32
Consensus pattern (25 bp):
TTCACATTCATCACATCGGCCATTA
Found at i:76744210 original size:74 final size:74
Alignment explanation
Indices: 76744123--76744270 Score: 296
Period size: 74 Copynumber: 2.0 Consensus size: 74
76744113 TATACACACT
76744123 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACAT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACAT
76744188 CGGCCATTA
66 CGGCCATTA
76744197 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACAT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACAT
76744262 CGGCCATTA
66 CGGCCATTA
76744271 GGCCTTATCA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (74 bp):
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACAT
CGGCCATTA
Found at i:76750736 original size:24 final size:24
Alignment explanation
Indices: 76750706--76750751 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
76750696 TATAATGTGA
* * *
76750706 AAATGACCTTTTTGCCCCTAGGTG
1 AAATGACCATTATACCCCTAGGTG
76750730 AAATGACCATTATACCCCTAGG
1 AAATGACCATTATACCCCTAGG
76750752 GTTATGTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (24 bp):
AAATGACCATTATACCCCTAGGTG
Found at i:76750807 original size:10 final size:10
Alignment explanation
Indices: 76750792--76750830 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
76750782 TGCTTTTGTA
76750792 CATGATATGC
1 CATGATATGC
76750802 CATGATATGC
1 CATGATATGC
76750812 ACATGATATGC
1 -CATGATATGC
76750823 CATGATAT
1 CATGATAT
76750831 ATTCACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:76750816 original size:21 final size:21
Alignment explanation
Indices: 76750791--76750830 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
76750781 CTGCTTTTGT
76750791 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
76750812 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
76750831 ATTCACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:76750911 original size:25 final size:25
Alignment explanation
Indices: 76750877--76750946 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
76750867 AGGAAGTGCT
*
76750877 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
76750902 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
76750927 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
76750947 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:76750959 original size:24 final size:24
Alignment explanation
Indices: 76750876--76750959 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
76750866 GAGGAAGTGC
*
76750876 TAAAAGGGCTTTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
* *
76750901 GAAAAGGGCTTTGCCCTAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
76750925 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTTTGCCCCAGTTTAT
76750949 TAAAAGAGGCT
1 TAAAAG-GGCT
76750960 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
23 5 0.10
24 8 0.16
25 38 0.75
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:76777474 original size:18 final size:18
Alignment explanation
Indices: 76777447--76777497 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
76777437 TTGGGATTTT
76777447 TGGG-CCACACGGGCATA
1 TGGGCCCACACGGGCATA
76777464 TGGGCCCACACGGGCATA
1 TGGGCCCACACGGGCATA
*
76777482 TGGGCCCACATGGGCA
1 TGGGCCCACACGGGCA
76777498 CACATTAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 4 0.12
18 28 0.88
ACGTcount: A:0.22, C:0.31, G:0.35, T:0.12
Consensus pattern (18 bp):
TGGGCCCACACGGGCATA
Found at i:76784420 original size:87 final size:87
Alignment explanation
Indices: 76784312--76784545 Score: 263
Period size: 87 Copynumber: 2.7 Consensus size: 87
76784302 CTGTACAGAC
* * * ***
76784312 TAAACTGCCAGATCAGATAATAGTACGCAGCAAAGCTGACATACATGTGGTATAGTGTGGGAAA-
1 TAAACTGCCAGATCAGATAATAGTACGCAGCAAAGCTGACGTACAAGTGGTACAGTGCAAGAAAT
* * *
76784376 CTGCTGTAAAGGCAAGTTTCAGT
66 C-ACTGTAAAGACAAGTTGCAGT
** * *** *
76784399 TAAACTGCCAGATCAGATAATAGTACATAGCAAAGTTGACGTACAAGCAATACAGTGCAATAAAT
1 TAAACTGCCAGATCAGATAATAGTACGCAGCAAAGCTGACGTACAAGTGGTACAGTGCAAGAAAT
** *
76784464 CACTGTACTGATAAGTTGCAGT
66 CACTGTAAAGACAAGTTGCAGT
* *
76784486 TAAACTGCCAAATCAGATAATAGTATGCAGCAAAGCTGACGTACAAGTGGTACAGTGCAA
1 TAAACTGCCAGATCAGATAATAGTACGCAGCAAAGCTGACGTACAAGTGGTACAGTGCAA
76784546 CCTATAAGTT
Statistics
Matches: 119, Mismatches: 27, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
87 118 0.99
88 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (87 bp):
TAAACTGCCAGATCAGATAATAGTACGCAGCAAAGCTGACGTACAAGTGGTACAGTGCAAGAAAT
CACTGTAAAGACAAGTTGCAGT
Found at i:76787271 original size:40 final size:41
Alignment explanation
Indices: 76787124--76787311 Score: 224
Period size: 40 Copynumber: 4.6 Consensus size: 41
76787114 AATTCTCAAT
* **
76787124 ATCTAGCACACTAAGTGCCTATACATAGCCAAAGCTAT-TATA
1 ATCT-GCACACTAAGTGCC-ATATATAGCCAAAGCTATCTCGA
* *
76787166 ATCTTGCACACTAAGTGCCTTACATAGCCAAAGCTATCTCG-
1 ATC-TGCACACTAAGTGCCATATATAGCCAAAGCTATCTCGA
* *
76787207 ATCTTGCACACCAAGTGCCA-ATATAGCCAAAGCTATTTCGA
1 ATC-TGCACACTAAGTGCCATATATAGCCAAAGCTATCTCGA
* *
76787248 ATC-GCACACTAAGTGCCATATATAGCCGAAGATATCTCGA
1 ATCTGCACACTAAGTGCCATATATAGCCAAAGCTATCTCGA
76787288 ATC-GCACACTAAGTGCCATATATA
1 ATCTGCACACTAAGTGCCATATATA
76787312 TATCTAAGTC
Statistics
Matches: 131, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
39 14 0.11
40 60 0.46
41 38 0.29
42 18 0.14
43 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (41 bp):
ATCTGCACACTAAGTGCCATATATAGCCAAAGCTATCTCGA
Found at i:76796263 original size:25 final size:25
Alignment explanation
Indices: 76796235--76796313 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
76796225 ACTCGGCCCT
*
76796235 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
76796260 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
76796282 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
76796307 ATCACAT
1 ATCACAT
76796314 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:76796359 original size:49 final size:49
Alignment explanation
Indices: 76796185--76796505 Score: 474
Period size: 49 Copynumber: 6.7 Consensus size: 49
76796175 CCCTTCGGGA
* * * * * *
76796185 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
76796232 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76796279 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76796326 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76796375 CTTATCACATATATACACACTTTCACAGTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76796424 CTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76796473 CTTATCACATATATATACACATTCACATTCATC
1 CTTATCACATATATATACACTTTCACATTCATC
76796506 GCATAAAATC
Statistics
Matches: 253, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 90 0.36
49 162 0.64
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76798407 original size:46 final size:43
Alignment explanation
Indices: 76798268--76798399 Score: 124
Period size: 46 Copynumber: 2.9 Consensus size: 43
76798258 GGCTGTCACA
*
76798268 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTTCA-CG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TT-AGTG
* * *
76798315 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATTAGTG
76798361 AACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 AACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT
76798400 CCTAGTGACA
Statistics
Matches: 73, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 29 0.40
47 29 0.40
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.23
Consensus pattern (43 bp):
AACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATTAGTG
Found at i:76802708 original size:41 final size:42
Alignment explanation
Indices: 76802630--76802789 Score: 143
Period size: 41 Copynumber: 3.9 Consensus size: 42
76802620 AATACTCGAT
* *
76802630 ATCTCGCGCACTAAGTGCCTATACATAGCCTAAGCTATTATA
1 ATCTCGCACACTAAGTGCCTATACATAGCCGAAGCTATTATA
* *
76802672 ATCTCGCACACTAAGTGCCT-TACATATCCGAAGCTATCT-CA
1 ATCTCGCACACTAAGTGCCTATACATAGCCGAAGCTAT-TATA
* * * * * **
76802713 GTCTCGCACACTTAGTGTC-ATATATAGCTGAAGCTATTCCGA
1 ATCTCGCACACTAAGTGCCTATACATAGCCGAAGCTATT-ATA
* *
76802755 A--TCGTACACTAAGTGCC-ATATATAGCCGAAGCTAT
1 ATCTCGCACACTAAGTGCCTATACATAGCCGAAGCTAT
76802790 CTCGAACCGC
Statistics
Matches: 98, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
40 31 0.32
41 46 0.47
42 21 0.21
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (42 bp):
ATCTCGCACACTAAGTGCCTATACATAGCCGAAGCTATTATA
Found at i:76802775 original size:40 final size:40
Alignment explanation
Indices: 76802633--76802818 Score: 151
Period size: 40 Copynumber: 4.6 Consensus size: 40
76802623 ACTCGATATC
* * * **
76802633 TCGCGCACTAAGTGCCTATACATAGCCTAAGCTATT-ATAA
1 TCGCACACTAAGTGCC-ATATATAGCCGAAGCTATTCCGAA
* * * * **
76802673 TCTCGCACACTAAGTGCCTTACATATCCGAAGCTATCTCAGTC
1 --TCGCACACTAAGTGCCATATATAGCCGAAGCTAT-TCCGAA
* * *
76802716 TCGCACACTTAGTGTCATATATAGCTGAAGCTATTCCGAA
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATTCCGAA
*
76802756 TCGTACACTAAGTGCCATATATAGCCGAAGCTA-TCTCGAA
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATTC-CGAA
* * *
76802796 CCGCACACTGAGTGCTATATATA
1 TCGCACACTAAGTGCCATATATA
76802819 TATCTGAGTC
Statistics
Matches: 117, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.02
40 55 0.47
41 43 0.37
42 16 0.14
43 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGCCGAAGCTATTCCGAA
Found at i:76804450 original size:23 final size:22
Alignment explanation
Indices: 76804409--76804452 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
76804399 ACCGTTTTCA
*
76804409 AAAAAAAAAGAAAAGAACAAAG
1 AAAAAAAAAGAAAACAACAAAG
76804431 AAAAAAAAAGAAAACCAACAAA
1 AAAAAAAAAGAAAA-CAACAAA
76804453 AGGGAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.82, C:0.09, G:0.09, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAGAAAACAACAAAG
Found at i:76807909 original size:49 final size:49
Alignment explanation
Indices: 76807841--76808022 Score: 240
Period size: 49 Copynumber: 3.7 Consensus size: 49
76807831 TCTATTGTGA
* * *
76807841 GGTCACCTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * *
76807890 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GACAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CGGATAA-TT
* * *
76807940 CGATCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
76807990 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
76808023 TGCGTACCAG
Statistics
Matches: 112, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
49 68 0.61
50 6 0.05
51 38 0.34
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:76811287 original size:41 final size:41
Alignment explanation
Indices: 76811242--76811339 Score: 99
Period size: 41 Copynumber: 2.4 Consensus size: 41
76811232 AAACATAGTT
* * **
76811242 GAAGCTATTTTAATCTCGCACATTAAGTGCC-TTTCATAGCC
1 GAAGCTATTTTAATCTCGCACACTAAATGCCACAT-ATAGCC
* **
76811283 GAAGCTATCTCGATCTCGCACACTAAATGCCACATATAGCC
1 GAAGCTATTTTAATCTCGCACACTAAATGCCACATATAGCC
*
76811324 TAAGCTATTTTGAATC
1 GAAGCTATTTT-AATC
76811340 ACACACGAAG
Statistics
Matches: 44, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
41 40 0.91
42 4 0.09
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (41 bp):
GAAGCTATTTTAATCTCGCACACTAAATGCCACATATAGCC
Found at i:76817220 original size:40 final size:40
Alignment explanation
Indices: 76817124--76817262 Score: 174
Period size: 40 Copynumber: 3.5 Consensus size: 40
76817114 GGACTAAGAT
* * *
76817124 CCGAAGGCATTCGTGCGAGTTAATAAATCCAGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
*
76817163 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
* * *
76817203 CCGAAGGCATTCATGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCCGGGTTAAGTC
* *
76817243 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
76817263 CGTTATATCC
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 34 0.39
40 44 0.51
41 9 0.10
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
Found at i:76825115 original size:40 final size:40
Alignment explanation
Indices: 76825060--76825269 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
76825050 AACATTGGAA
76825060 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76825100 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
76825140 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
76825180 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
76825219 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
76825260 CTATATCCGG
1 ATATATCCGG
76825270 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:76830386 original size:29 final size:29
Alignment explanation
Indices: 76830300--76830388 Score: 92
Period size: 29 Copynumber: 3.1 Consensus size: 29
76830290 AATTGTCAAA
* *
76830300 GATTATAGTTCTAGGTACTATGTACCGAT
1 GATTATAGTTCCAGGTACTATGTACCGGT
* * * *
76830329 G-TT-TCAGTTCCAGGCACTCTGTGCTGGT
1 GATTAT-AGTTCCAGGTACTATGTACCGGT
*
76830357 GATTATAGTTCCATGTACTATGTACCGGT
1 GATTATAGTTCCAGGTACTATGTACCGGT
76830386 GAT
1 GAT
76830389 GGATATCATA
Statistics
Matches: 46, Mismatches: 11, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
27 1 0.02
28 20 0.43
29 24 0.52
30 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (29 bp):
GATTATAGTTCCAGGTACTATGTACCGGT
Found at i:76831243 original size:14 final size:15
Alignment explanation
Indices: 76831216--76831253 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
76831206 ATAGATTGCT
76831216 AATGGTTGATGTTTG
1 AATGGTTGATGTTTG
*
76831231 AATGGTT-ATGTTTT
1 AATGGTTGATGTTTG
*
76831245 AATGTTTGA
1 AATGGTTGA
76831254 ATCATGGTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (15 bp):
AATGGTTGATGTTTG
Found at i:76840529 original size:72 final size:72
Alignment explanation
Indices: 76840412--76840556 Score: 272
Period size: 72 Copynumber: 2.0 Consensus size: 72
76840402 ACTTGATTAG
*
76840412 GCCTATTTCTTCTAATAGCTTTTAGTGGTGACATATTCATACTTGTGGTAATTGATTATTTCAAA
1 GCCTATTTCTTCTAATAACTTTTAGTGGTGACATATTCATACTTGTGGTAATTGATTATTTCAAA
76840477 AAAGATT
66 AAAGATT
*
76840484 GCCTATTTCTTCTAATAATTTTTAGTGGTGACATATTCATACTTGTGGTAATTGATTATTTCAAA
1 GCCTATTTCTTCTAATAACTTTTAGTGGTGACATATTCATACTTGTGGTAATTGATTATTTCAAA
76840549 AAAGATT
66 AAAGATT
76840556 G
1 G
76840557 AAATTATGTC
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.43
Consensus pattern (72 bp):
GCCTATTTCTTCTAATAACTTTTAGTGGTGACATATTCATACTTGTGGTAATTGATTATTTCAAA
AAAGATT
Found at i:76841315 original size:31 final size:28
Alignment explanation
Indices: 76841247--76841316 Score: 79
Period size: 30 Copynumber: 2.4 Consensus size: 28
76841237 AACTTAAATA
*
76841247 TAAATTTGATACTTAAATTTATTTTCTTC
1 TAAA-TTGATACTTAAAGTTATTTTCTTC
76841276 TAAATTGATACTTAAAAGGTTATTTT-TGTC
1 TAAATTGATACTT-AAA-GTTATTTTCT-TC
76841306 TCAAATTGATA
1 T-AAATTGATA
76841317 TTCAAATGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
28 9 0.25
29 8 0.22
30 10 0.28
31 9 0.25
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.49
Consensus pattern (28 bp):
TAAATTGATACTTAAAGTTATTTTCTTC
Found at i:76843663 original size:18 final size:18
Alignment explanation
Indices: 76843640--76843674 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
76843630 TTGTTTACAT
*
76843640 AAATGTGAATATCATTTG
1 AAATGTGAACATCATTTG
76843658 AAATGTGAACATCATTT
1 AAATGTGAACATCATTT
76843675 ATCGTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (18 bp):
AAATGTGAACATCATTTG
Found at i:76849512 original size:17 final size:17
Alignment explanation
Indices: 76849490--76849522 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
76849480 GATATGATAC
76849490 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
76849507 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
76849523 AACAGGGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:76849523 original size:18 final size:17
Alignment explanation
Indices: 76849490--76849523 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
76849480 GATATGATAC
*
76849490 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
76849507 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
76849524 ACAGGGAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:76849847 original size:19 final size:19
Alignment explanation
Indices: 76849785--76849862 Score: 117
Period size: 19 Copynumber: 4.3 Consensus size: 19
76849775 ATATTAAAAA
76849785 ATCATATCTAAGATTGCA-
1 ATCATATCTAAGATTGCAT
*
76849803 ATCATATCTAATATTG--T
1 ATCATATCTAAGATTGCAT
*
76849820 ATTATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
76849839 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
76849858 ATCAT
1 ATCAT
76849863 TGAAGATTAT
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
17 14 0.26
18 15 0.28
19 24 0.45
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:76849870 original size:36 final size:35
Alignment explanation
Indices: 76849788--76849857 Score: 113
Period size: 36 Copynumber: 2.0 Consensus size: 35
76849778 TTAAAAAATC
* *
76849788 ATATCTAAGATTGCAATCATATCTAATATTGTATT
1 ATATCTAAGATTGCAATCATATCTAAGATTGCATT
76849823 ATATCTAAGATTGCATATCATATCTAAGATTGCAT
1 ATATCTAAGATTGCA-ATCATATCTAAGATTGCAT
76849858 ATCATTGAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 15 0.47
36 17 0.53
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (35 bp):
ATATCTAAGATTGCAATCATATCTAAGATTGCATT
Found at i:76850019 original size:21 final size:20
Alignment explanation
Indices: 76849981--76850020 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
76849971 TTGGACTTCG
**
76849981 TTTTTTTTTTGGGTTTATTA
1 TTTTTTTTTTGGACTTATTA
76850001 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGGACTTATT
76850021 TCTGGGCCCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTTGGACTTATTA
Found at i:76850337 original size:92 final size:78
Alignment explanation
Indices: 76850292--76850565 Score: 426
Period size: 78 Copynumber: 3.5 Consensus size: 78
76850282 ATGTAAACAC
*
76850292 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAAAGATGCCAAATCATCT
76850357 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
76850370 ATGAAGGTCCA-ATCTG-TCATGTCTTCGATCTGCTCTCCGTCGAATACAAAGATGCCAAATCAT
1 ATGAAGGT-CAGATCTGCT-ATGTCTTCGATCTACTCCCCGTCTAATACAAAGATGCCAAATCAT
76850433 CTTGGATCTGCTTCA
64 CTTGGATCTGCTTCA
* *
76850448 ATGAAGGTCAGATCTACTGTGTCTTCGATCTACTCCCCGTCTAATACAAAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAAAGATGCCAAATCATCT
*
76850513 TAGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
76850526 ATGAAGGTTAGATCTACTATGTCTTCGATCTACTCTCCGT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGT
76850566 TGAATATGGA
Statistics
Matches: 179, Mismatches: 13, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
77 3 0.02
78 173 0.97
79 3 0.02
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAAAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:76852620 original size:46 final size:45
Alignment explanation
Indices: 76852567--76852829 Score: 206
Period size: 46 Copynumber: 5.8 Consensus size: 45
76852557 TGGTTGAGCA
*
76852567 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCAAAGG
* *
76852613 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGA-GAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATG-GATGCAA--AGG
* * * *
76852658 CATCCGAGCTCGTTGAGTTGAGTCC--G-TGA--ACGGATGCAAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCAAAGG
* *
76852700 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGA-GAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATG-GATGCAA--AGG
* * *
76852745 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCAAAGG
* *
76852793 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGG
76852830 GCGGGTTACA
Statistics
Matches: 180, Mismatches: 15, Indels: 44
0.75 0.06 0.18
Matches are distributed among these distances:
40 22 0.12
42 5 0.03
43 15 0.08
44 9 0.05
45 6 0.03
46 64 0.36
47 49 0.27
48 2 0.01
49 1 0.01
50 6 0.03
51 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCAAAGG
Found at i:76852682 original size:47 final size:47
Alignment explanation
Indices: 76852564--76852775 Score: 214
Period size: 47 Copynumber: 4.7 Consensus size: 47
76852554 AGATGGTTGA
* * *
76852564 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCAA--AT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGA--GA--GATGTAACTAG
76852612 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
* * ** * *
76852657 GCATCCGAGCTCGTTGAGTTGAGTCCGTGAAC--G-GATGCAA--AT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
76852699 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
*
76852744 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
76852776 ACTTATGGAT
Statistics
Matches: 136, Mismatches: 16, Indels: 25
0.77 0.09 0.14
Matches are distributed among these distances:
40 25 0.18
42 3 0.02
43 12 0.09
44 6 0.04
45 6 0.04
46 29 0.21
47 54 0.40
48 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:76852716 original size:87 final size:87
Alignment explanation
Indices: 76852602--76852770 Score: 338
Period size: 87 Copynumber: 1.9 Consensus size: 87
76852592 GTTCACTTAT
76852602 GGATGCAAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGC
1 GGATGCAAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGC
76852667 TCGTTGAGTTGAGTCCGTGAAC
66 TCGTTGAGTTGAGTCCGTGAAC
76852689 GGATGCAAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGC
1 GGATGCAAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGC
76852754 TCGTTGAGTTGAGTCCG
66 TCGTTGAGTTGAGTCCG
76852771 AGTTCACTTA
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 82 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (87 bp):
GGATGCAAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGC
TCGTTGAGTTGAGTCCGTGAAC
Found at i:76862281 original size:22 final size:21
Alignment explanation
Indices: 76862246--76862303 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
76862236 AAAAGGTATC
* * *
76862246 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAAAT
76862267 TACAAAATCATATCTTCTAAAAT
1 TAC-AAATCATATC-TCTAAAAT
* *
76862290 TGCATATCATATCT
1 TACAAATCATATCT
76862304 AAGATTGCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAAAT
Found at i:76862310 original size:19 final size:19
Alignment explanation
Indices: 76862282--76862372 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
76862272 AATCATATCT
*
76862282 TCTAAAATTGCATATCATA
1 TCTAAGATTGCATATCATA
76862301 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
76862319 TCTAATATTG--TATCATA
1 TCTAAGATTGCATATCATA
76862336 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
76862355 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
76862373 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.23
18 15 0.23
19 36 0.55
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:76862333 original size:35 final size:36
Alignment explanation
Indices: 76862294--76862364 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 36
76862284 TAAAATTGCA
*
76862294 TATCATATCTAAGATTGCA-ATCATATCTAATATTG
1 TATCATATCTAAGATTGCATATCATATCTAAGATTG
76862329 TATCATATCTAAGATTGCATATCATATCTAAGATTG
1 TATCATATCTAAGATTGCATATCATATCTAAGATTG
76862365 CATATCATTG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 19 0.56
36 15 0.44
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (36 bp):
TATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:76863558 original size:29 final size:27
Alignment explanation
Indices: 76863505--76863586 Score: 92
Period size: 29 Copynumber: 2.9 Consensus size: 27
76863495 ATATTAAATA
* * *
76863505 TTAAATTTTTAAGTTTTTTATTTTTAATT
1 TTAAATTTTTAAATTTTTAAATTTT--TT
76863534 TTAAATTTTTAAATTTTTAAATTTTTT
1 TTAAATTTTTAAATTTTTAAATTTTTT
76863561 TTGAAGATTTTTATAATTTTTAAATT
1 TT-AA-ATTTTTA-AATTTTTAAATT
76863587 ATCATATAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
27 4 0.09
28 2 0.04
29 29 0.62
30 12 0.26
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.65
Consensus pattern (27 bp):
TTAAATTTTTAAATTTTTAAATTTTTT
Found at i:76863586 original size:8 final size:8
Alignment explanation
Indices: 76863505--76863559 Score: 71
Period size: 8 Copynumber: 7.2 Consensus size: 8
76863495 ATATTAAATA
76863505 TTAAATTT
1 TTAAATTT
*
76863513 TTAAGTTT
1 TTAAATTT
*
76863521 TT-TATTT
1 TTAAATTT
76863528 TT-AA-TT
1 TTAAATTT
76863534 TTAAATTT
1 TTAAATTT
76863542 TTAAATTT
1 TTAAATTT
76863550 TTAAATTT
1 TTAAATTT
76863558 TT
1 TT
76863560 TTTGAAGATT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
6 4 0.10
7 8 0.20
8 29 0.71
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (8 bp):
TTAAATTT
Found at i:76864298 original size:15 final size:14
Alignment explanation
Indices: 76864276--76864310 Score: 61
Period size: 15 Copynumber: 2.4 Consensus size: 14
76864266 CCCTAACCCC
76864276 TAAACCATAATCCA
1 TAAACCATAATCCA
76864290 TAAATCCATAATCCA
1 TAAA-CCATAATCCA
76864305 TAAACC
1 TAAACC
76864311 TTAAAATAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACCATAATCCA
Found at i:76864356 original size:14 final size:14
Alignment explanation
Indices: 76864334--76864378 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
76864324 TCATACACTT
76864334 TAAACCCTAAACCA
1 TAAACCCTAAACCA
* *
76864348 TATACCCTAAATCA
1 TAAACCCTAAACCA
* *
76864362 TAAACTCTAAACTA
1 TAAACCCTAAACCA
76864376 TAA
1 TAA
76864379 TGATAATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:76864484 original size:7 final size:7
Alignment explanation
Indices: 76864472--76864592 Score: 59
Period size: 7 Copynumber: 17.0 Consensus size: 7
76864462 ACTAATTAAT
76864472 CTAAACC
1 CTAAACC
76864479 CTAAACTC
1 CTAAAC-C
* *
76864487 TTAATCC
1 CTAAACC
76864494 CTAAACC
1 CTAAACC
76864501 CTAAACC
1 CTAAACC
* *
76864508 ATAAATC
1 CTAAACC
* *
76864515 ATAAAAC
1 CTAAACC
*
76864522 ATAAACC
1 CTAAACC
*
76864529 TTAAACC
1 CTAAACC
* *
76864536 ATGAACCC
1 CT-AAACC
76864544 CT-AACC
1 CTAAACC
*
76864550 CGTAACCC
1 C-TAAACC
76864558 CT-AACAC
1 CTAAAC-C
76864565 CTAAACC
1 CTAAACC
*
76864572 TTAAA-C
1 CTAAACC
*
76864578 CTCAACC
1 CTAAACC
76864585 CTTAAACC
1 C-TAAACC
76864593 ACCCTTAAAC
Statistics
Matches: 87, Mismatches: 19, Indels: 15
0.72 0.16 0.12
Matches are distributed among these distances:
6 10 0.11
7 55 0.63
8 22 0.25
ACGTcount: A:0.42, C:0.36, G:0.02, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:76864514 original size:22 final size:22
Alignment explanation
Indices: 76864472--76864514 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
76864462 ACTAATTAAT
*
76864472 CTAAACCCTAAACTCTTAATCC
1 CTAAACCCTAAACTCTAAATCC
76864494 CTAAACCCTAAAC-CATAAATC
1 CTAAACCCTAAACTC-TAAATC
76864515 ATAAAACATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.42, C:0.35, G:0.00, T:0.23
Consensus pattern (22 bp):
CTAAACCCTAAACTCTAAATCC
Found at i:76864979 original size:41 final size:41
Alignment explanation
Indices: 76864909--76865015 Score: 132
Period size: 41 Copynumber: 2.7 Consensus size: 41
76864899 AAATTCTTTT
* *
76864909 GCGGCGTTTTT--TAAAAGTGCTGCTAAAGGTGTACCTATA
1 GCGGCGTTTTTAATAAAAGTGCCGCTAAAGGTGTACATATA
*
76864948 GCGGCGTTTCTTAATAAAA-TGCCGCTAAAGGTTTACATATA
1 GCGGCGTTT-TTAATAAAAGTGCCGCTAAAGGTGTACATATA
* *
76864989 GCGGCATTTTTAA-AAAAGCGCCGCTAA
1 GCGGCGTTTTTAATAAAAGTGCCGCTAA
76865016 TACTTGATCT
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
39 13 0.22
40 14 0.24
41 27 0.46
42 5 0.08
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (41 bp):
GCGGCGTTTTTAATAAAAGTGCCGCTAAAGGTGTACATATA
Found at i:76865044 original size:40 final size:40
Alignment explanation
Indices: 76864995--76865079 Score: 127
Period size: 39 Copynumber: 2.1 Consensus size: 40
76864985 TATAGCGGCA
*
76864995 TTTTTAAAAAAGCGCCGCTAATACTTGATCTTT-GCAGCG
1 TTTTTAAAAAAGCGCCGCTAATACTCGATCTTTAGCAGCG
* * *
76865034 TTTTTAAAAAAGCGCCGCTAATGCTCGTTCTTTAGCGGCG
1 TTTTTAAAAAAGCGCCGCTAATACTCGATCTTTAGCAGCG
76865074 TTTTTA
1 TTTTTA
76865080 GGCGTTTTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 30 0.73
40 11 0.27
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (40 bp):
TTTTTAAAAAAGCGCCGCTAATACTCGATCTTTAGCAGCG
Found at i:76865356 original size:34 final size:33
Alignment explanation
Indices: 76865318--76865391 Score: 85
Period size: 34 Copynumber: 2.2 Consensus size: 33
76865308 AACATATATC
* *
76865318 TATTTGGGCAGTTATGTCTATCCGAAGAGACATA
1 TATTTGGCCAGTTATGTCTATACGAA-AGACATA
** * *
76865352 TATTTTACCAGTTATGTCTATATGAAAGACATT
1 TATTTGGCCAGTTATGTCTATACGAAAGACATA
76865385 TATTTGG
1 TATTTGG
76865392 ACAATAATAT
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
33 11 0.34
34 21 0.66
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (33 bp):
TATTTGGCCAGTTATGTCTATACGAAAGACATA
Found at i:76865389 original size:33 final size:34
Alignment explanation
Indices: 76865326--76865389 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
76865316 TCTATTTGGG
*
76865326 CAGTTATGTCTATCCGAAGAGACATATATTTTAC
1 CAGTTATGTCTATACGAAGAGACATATATTTTAC
* *
76865360 CAGTTATGTCTATATGAA-AGACATTTATTT
1 CAGTTATGTCTATACGAAGAGACATATATTT
76865390 GGACAATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 11 0.41
34 16 0.59
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (34 bp):
CAGTTATGTCTATACGAAGAGACATATATTTTAC
Found at i:76872375 original size:20 final size:20
Alignment explanation
Indices: 76872347--76872390 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
76872337 GATTTTTCTT
76872347 TACAAAAGTTACCAAAACTC
1 TACAAAAGTTACCAAAACTC
* * *
76872367 TACAGAAGTTAGCGAAACTC
1 TACAAAAGTTACCAAAACTC
76872387 TACA
1 TACA
76872391 TTTCTGAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.45, C:0.23, G:0.11, T:0.20
Consensus pattern (20 bp):
TACAAAAGTTACCAAAACTC
Found at i:76873200 original size:22 final size:22
Alignment explanation
Indices: 76873174--76873217 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
76873164 GAGATGTTAA
76873174 GGTTCTGAGGAGAAAGTCCATT
1 GGTTCTGAGGAGAAAGTCCATT
*
76873196 GGTTCTGAGGAGGAAGTCCATT
1 GGTTCTGAGGAGAAAGTCCATT
76873218 CCTTTAGTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.14, G:0.34, T:0.27
Consensus pattern (22 bp):
GGTTCTGAGGAGAAAGTCCATT
Found at i:76875995 original size:25 final size:22
Alignment explanation
Indices: 76875962--76876015 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 22
76875952 GTAGACTGCT
76875962 ATAAAAGTTGAAGAACCAGAGAAA
1 ATAAAAGTT--AGAACCAGAGAAA
*
76875986 ATAACAAGTTAGAACTAGAGAAA
1 ATAA-AAGTTAGAACCAGAGAAA
*
76876009 ATGAAAG
1 ATAAAAG
76876016 GGACAATAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 3 0.11
23 15 0.56
24 4 0.15
25 5 0.19
ACGTcount: A:0.57, C:0.07, G:0.20, T:0.15
Consensus pattern (22 bp):
ATAAAAGTTAGAACCAGAGAAA
Found at i:76877455 original size:40 final size:41
Alignment explanation
Indices: 76877376--76877455 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 41
76877366 TTCTTTCTCT
* *
76877376 TTTTCCTTCTTTCTTTTTCTTTCGTTTTACTTCTCTGTTTC
1 TTTTCCTTCTTTCTATTTCTTTCGTTTTACTTATCTGTTTC
* *
76877417 TTTTCCTT-TTTCTATTTCATTTC-TTTTATTTATTTGTTT
1 TTTTCCTTCTTTCTATTTC-TTTCGTTTTACTTATCTGTTT
76877456 ATTCTTTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
40 22 0.65
41 12 0.35
ACGTcount: A:0.06, C:0.19, G:0.04, T:0.71
Consensus pattern (41 bp):
TTTTCCTTCTTTCTATTTCTTTCGTTTTACTTATCTGTTTC
Found at i:76877486 original size:5 final size:5
Alignment explanation
Indices: 76877476--76877529 Score: 108
Period size: 5 Copynumber: 10.8 Consensus size: 5
76877466 AATTATTATA
76877476 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
76877526 ATAA
1 ATAA
76877530 AGTATTACAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 49 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:76877564 original size:20 final size:19
Alignment explanation
Indices: 76877539--76877586 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
76877529 AAGTATTACA
*
76877539 TATATTATTATATACATATG
1 TATATTATT-TATACACATG
*
76877559 TATATTATTTTTACACATG
1 TATATTATTTATACACATG
76877578 TA-ATTATTT
1 TATATTATTT
76877587 TTACCATACA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 7 0.27
19 10 0.38
20 9 0.35
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.54
Consensus pattern (19 bp):
TATATTATTTATACACATG
Found at i:76877585 original size:18 final size:19
Alignment explanation
Indices: 76877539--76877590 Score: 70
Period size: 18 Copynumber: 2.7 Consensus size: 19
76877529 AAGTATTACA
* *
76877539 TATATTATTATATACATATG
1 TATATTATT-TTTACACATG
76877559 TATATTATTTTTACACATG
1 TATATTATTTTTACACATG
76877578 TA-ATTATTTTTAC
1 TATATTATTTTTAC
76877591 CATACACTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 11 0.37
19 10 0.33
20 9 0.30
ACGTcount: A:0.35, C:0.08, G:0.04, T:0.54
Consensus pattern (19 bp):
TATATTATTTTTACACATG
Found at i:76881379 original size:10 final size:10
Alignment explanation
Indices: 76881366--76881419 Score: 58
Period size: 10 Copynumber: 5.6 Consensus size: 10
76881356 AAAATCATAA
76881366 AAAAATTATT
1 AAAAATTATT
* *
76881376 AAAAAATATA
1 AAAAATTATT
76881386 AAAAATTATT
1 AAAAATTATT
* *
76881396 GAATATTA--
1 AAAAATTATT
76881404 AAAAATTATT
1 AAAAATTATT
76881414 AAAAAT
1 AAAAAT
76881420 ATGAAATTGA
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
8 6 0.18
10 28 0.82
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (10 bp):
AAAAATTATT
Found at i:76881415 original size:11 final size:11
Alignment explanation
Indices: 76881355--76881418 Score: 59
Period size: 11 Copynumber: 6.4 Consensus size: 11
76881345 AATTTATAAG
* *
76881355 AAAAATCATAA
1 AAAAATTATTA
76881366 AAAAATTATTA
1 AAAAATTATTA
76881377 AAAAA-TA-TA
1 AAAAATTATTA
76881386 AAAAATTATT-
1 AAAAATTATTA
*
76881396 --GAA-TATTA
1 AAAAATTATTA
76881404 AAAAATTATTA
1 AAAAATTATTA
76881415 AAAA
1 AAAA
76881419 TATGAAATTG
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
7 4 0.09
8 2 0.05
9 7 0.16
10 6 0.14
11 24 0.56
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AAAAATTATTA
Found at i:76881420 original size:20 final size:20
Alignment explanation
Indices: 76881355--76881421 Score: 77
Period size: 20 Copynumber: 3.4 Consensus size: 20
76881345 AATTTATAAG
*
76881355 AAAAATCATAAAAAAATTATT
1 AAAAAT-ATTAAAAAATTATT
76881376 AAAAA-ATATAAAAAATTATT
1 AAAAATAT-TAAAAAATTATT
*
76881396 --GAATATTAAAAAATTATT
1 AAAAATATTAAAAAATTATT
76881414 AAAAATAT
1 AAAAATAT
76881422 GAAATTGATA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
18 14 0.36
19 4 0.10
20 16 0.41
21 5 0.13
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (20 bp):
AAAAATATTAAAAAATTATT
Found at i:76881445 original size:38 final size:37
Alignment explanation
Indices: 76881357--76881456 Score: 107
Period size: 38 Copynumber: 2.7 Consensus size: 37
76881347 TTTATAAGAA
*
76881357 AAATCATAAAAAAATTATTAAAAAATATAAAAAATTATT
1 AAATTATAAAAAAATTATT-AAAAATAT-AAAAATTATT
* * *
76881396 GAA-TATTAAAAAATTATTAAAAATAT-GAAATTGATAT
1 AAATTATAAAAAAATTATTAAAAATATAAAAATT-AT-T
76881433 AAATTATAAAAAAATTA-TAAAAAT
1 AAATTATAAAAAAATTATTAAAAAT
76881457 TACCAACAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
35 5 0.10
36 2 0.04
37 18 0.35
38 25 0.48
39 2 0.04
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (37 bp):
AAATTATAAAAAAATTATTAAAAATATAAAAATTATT
Found at i:76881454 original size:10 final size:10
Alignment explanation
Indices: 76881355--76881455 Score: 54
Period size: 10 Copynumber: 10.4 Consensus size: 10
76881345 AATTTATAAG
*
76881355 AAAAATCATAA
1 AAAAATTAT-A
76881366 AAAAATTATTA
1 AAAAATTA-TA
76881377 AAAAA-TATA
1 AAAAATTATA
*
76881386 AAAAATTATT
1 AAAAATTATA
* *
76881396 GAATA-T-TA
1 AAAAATTATA
*
76881404 AAAAATTATT
1 AAAAATTATA
76881414 AAAAA-TAT-
1 AAAAATTATA
*
76881422 -GAAATTGAT-
1 AAAAATT-ATA
*
76881431 ATAAATTATAA
1 AAAAATTAT-A
76881442 AAAAATTATA
1 AAAAATTATA
76881452 AAAA
1 AAAA
76881456 TTACCAACAA
Statistics
Matches: 70, Mismatches: 11, Indels: 19
0.70 0.11 0.19
Matches are distributed among these distances:
7 3 0.04
8 5 0.07
9 16 0.23
10 24 0.34
11 21 0.30
12 1 0.01
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (10 bp):
AAAAATTATA
Found at i:76881456 original size:9 final size:9
Alignment explanation
Indices: 76881366--76881607 Score: 64
Period size: 9 Copynumber: 25.6 Consensus size: 9
76881356 AAAATCATAA
76881366 AAAAATTATT
1 AAAAATTA-T
*
76881376 AAAAAATAT
1 AAAAATTAT
76881385 AAAAAATTATT
1 -AAAAATTA-T
* *
76881396 GAATATTA-
1 AAAAATTAT
76881404 AAAAATTATT
1 AAAAATTA-T
76881414 AAAAA-TAT
1 AAAAATTAT
*
76881422 -GAAATTGAT
1 AAAAATT-AT
*
76881431 ATAAATTAT
1 AAAAATTAT
76881440 AAAAAAATTAT
1 --AAAAATTAT
*
76881451 AAAAATTACC
1 AAAAATTA-T
*
76881461 AACAA-TAT
1 AAAAATTAT
* *
76881469 AAAAAATCT
1 AAAAATTAT
* *
76881478 AATAATTAA
1 AAAAATTAT
*
76881487 AAAAATAAT
1 AAAAATTAT
76881496 -AAAATT-T
1 AAAAATTAT
*
76881503 ACAATATGTATTT
1 A-AAAAT-TA--T
*
76881516 AAAATTTTAT
1 AAAA-ATTAT
**
76881526 AAAAACACATT
1 AAAAA-TTA-T
*
76881537 AAAATTCTAT
1 AAAAAT-TAT
*
76881547 AAAAATCAT
1 AAAAATTAT
* *
76881556 AAAAAATAA
1 AAAAATTAT
**
76881565 AAAAAGCAT
1 AAAAATTAT
*
76881574 TAAAATTAAT
1 AAAAATT-AT
*
76881584 ATAAACTTAT
1 A-AAAATTAT
76881594 AAAAATTAT
1 AAAAATTAT
76881603 AAAAA
1 AAAAA
76881608 AATCAGAAAA
Statistics
Matches: 164, Mismatches: 45, Indels: 47
0.64 0.18 0.18
Matches are distributed among these distances:
7 4 0.02
8 17 0.10
9 64 0.39
10 52 0.32
11 20 0.12
12 4 0.02
13 3 0.02
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:76881458 original size:20 final size:19
Alignment explanation
Indices: 76881355--76881458 Score: 65
Period size: 20 Copynumber: 5.4 Consensus size: 19
76881345 AATTTATAAG
*
76881355 AAAAATCATAAAAAAATTATT
1 AAAAATTAT-AAAAAATTA-T
*
76881376 AAAAAATATAAAAAATTAT
1 AAAAATTATAAAAAATTAT
**
76881395 -TGAA-TATTAAAAAATTATT
1 AAAAATTA-TAAAAAATTA-T
*
76881414 AAAAA-TAT--GAAATTGAT
1 AAAAATTATAAAAAATT-AT
*
76881431 ATAAATTATAAAAAAATTAT
1 AAAAATTAT-AAAAAATTAT
76881451 AAAAATTA
1 AAAAATTA
76881459 CCAACAATAT
Statistics
Matches: 65, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
17 12 0.18
18 16 0.25
19 3 0.05
20 22 0.34
21 12 0.18
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (19 bp):
AAAAATTATAAAAAATTAT
Found at i:76881596 original size:38 final size:38
Alignment explanation
Indices: 76881523--76881609 Score: 97
Period size: 38 Copynumber: 2.3 Consensus size: 38
76881513 TTTAAAATTT
* *
76881523 TATAAAAACACATTAAAATTCTATAAAAATCATAAAAA
1 TATAAAAAAACATTAAAATTATATAAAAATCATAAAAA
* *
76881561 -ATAAAAAAAGCATTAAAATTA-ATATAAACTTATAAAAA
1 TATAAAAAAA-CATTAAAATTATATA-AAAATCATAAAAA
76881599 TTATAAAAAAA
1 -TATAAAAAAA
76881610 TCAGAAAACT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
37 11 0.27
38 21 0.51
40 9 0.22
ACGTcount: A:0.66, C:0.07, G:0.01, T:0.26
Consensus pattern (38 bp):
TATAAAAAAACATTAAAATTATATAAAAATCATAAAAA
Found at i:76883304 original size:45 final size:44
Alignment explanation
Indices: 76883228--76883312 Score: 116
Period size: 45 Copynumber: 1.9 Consensus size: 44
76883218 TTGTGTACAT
* *
76883228 ACAGTCATAGGCAGATTCCATCTGCAATGTTTTTGCTGTGTATCC
1 ACAGCCATAGGCAAATTCCATCTGCAATG-TTTTGCTGTGTATCC
***
76883273 ACAGCCATAGGCAAATTCCATCTGTGGTGTTTTGCTGTGT
1 ACAGCCATAGGCAAATTCCATCTGCAATGTTTTGCTGTGT
76883313 GTTCACAGTG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
44 11 0.31
45 24 0.69
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.35
Consensus pattern (44 bp):
ACAGCCATAGGCAAATTCCATCTGCAATGTTTTGCTGTGTATCC
Found at i:76887546 original size:14 final size:13
Alignment explanation
Indices: 76887523--76887552 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
76887513 TTCTTTTAAA
76887523 TTAAACAATTATT
1 TTAAACAATTATT
76887536 TTAATACAATTATT
1 TTAA-ACAATTATT
76887550 TTA
1 TTA
76887553 TGACCTCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (13 bp):
TTAAACAATTATT
Found at i:76890244 original size:46 final size:46
Alignment explanation
Indices: 76890143--76890230 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
76890133 TGTAACCCGC
* * * *
76890143 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
* *
76890189 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
76890231 AACCATCCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:76893539 original size:26 final size:26
Alignment explanation
Indices: 76893503--76893586 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
76893493 CATGAAATTC
*
76893503 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
76893529 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
76893555 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
76893581 TTATCA
1 TTATCA
76893587 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:76897174 original size:35 final size:35
Alignment explanation
Indices: 76897135--76897206 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
76897125 AATAGGCATT
76897135 TTTAGTGGATTACCCTTAATAACCAATAAGAAATA
1 TTTAGTGGATTACCCTTAATAACCAATAAGAAATA
76897170 TTTAGTGGATTACCCTTAATAACCAATAAGAAATA
1 TTTAGTGGATTACCCTTAATAACCAATAAGAAATA
76897205 TT
1 TT
76897207 CAATCTGGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33
Consensus pattern (35 bp):
TTTAGTGGATTACCCTTAATAACCAATAAGAAATA
Found at i:76899872 original size:51 final size:51
Alignment explanation
Indices: 76899769--76899875 Score: 119
Period size: 50 Copynumber: 2.1 Consensus size: 51
76899759 CTAGTTCAAG
* * * *
76899769 TTTTTATGTTTTTTTTAATAATTTTTATAACTTTATATCAATTTTAATATT
1 TTTTTATATTTTTTTTAACAATTTTTATAACTTTATAACAATTATAATATT
* * * *
76899820 TTTTTATATTTTTTTT-ACAATTTTTATTA-TTTTTAAGAATTATAATACAT
1 TTTTTATATTTTTTTTAACAATTTTTATAACTTTATAACAATTATAATA-TT
76899870 TTTTTA
1 TTTTTA
76899876 AAATTTTTAG
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
49 14 0.30
50 18 0.38
51 15 0.32
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (51 bp):
TTTTTATATTTTTTTTAACAATTTTTATAACTTTATAACAATTATAATATT
Found at i:76899929 original size:27 final size:29
Alignment explanation
Indices: 76899899--76899965 Score: 77
Period size: 27 Copynumber: 2.4 Consensus size: 29
76899889 TTTAAATAAG
*
76899899 TTTTATTTATTTT-ATAATTTATTAGA-T
1 TTTTATATATTTTGATAATTTATTAGACT
* *
76899926 TTTT-TATATTTTGATAATTTTTTATACT
1 TTTTATATATTTTGATAATTTATTAGACT
*
76899954 TTTTATAAATTT
1 TTTTATATATTT
76899966 ATATCAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 7 0.21
27 15 0.45
28 5 0.15
29 6 0.18
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.67
Consensus pattern (29 bp):
TTTTATATATTTTGATAATTTATTAGACT
Found at i:76899932 original size:19 final size:18
Alignment explanation
Indices: 76899908--76899951 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
76899898 GTTTTATTTA
76899908 TTTTATAATTT-ATTAGATT
1 TTTTATAATTTGA-TA-ATT
*
76899927 TTTTATATTTTGATAATT
1 TTTTATAATTTGATAATT
76899945 TTTTATA
1 TTTTATA
76899952 CTTTTTATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 10 0.43
19 12 0.52
20 1 0.04
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (18 bp):
TTTTATAATTTGATAATT
Found at i:76899945 original size:18 final size:19
Alignment explanation
Indices: 76899924--76899961 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
76899914 AATTTATTAG
76899924 ATTTTTTATA-TTTTGATA
1 ATTTTTTATACTTTTGATA
*
76899942 ATTTTTTATACTTTTTATA
1 ATTTTTTATACTTTTGATA
76899961 A
1 A
76899962 ATTTATATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (19 bp):
ATTTTTTATACTTTTGATA
Found at i:76899956 original size:10 final size:9
Alignment explanation
Indices: 76899899--76900042 Score: 73
Period size: 10 Copynumber: 15.7 Consensus size: 9
76899889 TTTAAATAAG
76899899 TTTTAT-TT
1 TTTTATATT
76899907 ATTTTATAATT
1 -TTTTAT-ATT
* *
76899918 TATTAGATT
1 TTTTATATT
76899927 TTTTATA-T
1 TTTTATATT
*
76899935 TTTGATAATT
1 TTTTAT-ATT
*
76899945 TTTTATACT
1 TTTTATATT
*
76899954 TTTTATAAAT
1 TTTTAT-ATT
* *
76899964 TTATATCAAT
1 TTTTAT-ATT
* *
76899974 TTTCATATG
1 TTTTATATT
*
76899983 TTTTA-ATA
1 TTTTATATT
* *
76899991 TTTAACCA-T
1 TTTTA-TATT
76900000 TTTTAT-TT
1 TTTTATATT
76900008 TTTTATATTT
1 TTTTATA-TT
76900018 TTTTATATAT
1 TTTTATAT-T
76900028 TTTTATATT
1 TTTTATATT
76900037 TTTTAT
1 TTTTAT
76900043 GAGGAAAATA
Statistics
Matches: 104, Mismatches: 20, Indels: 22
0.71 0.14 0.15
Matches are distributed among these distances:
8 19 0.18
9 40 0.38
10 43 0.41
11 2 0.02
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (9 bp):
TTTTATATT
Found at i:76900501 original size:11 final size:11
Alignment explanation
Indices: 76900467--76900515 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
76900457 ATATATTTGT
76900467 TTTTTTTAT-A
1 TTTTTTTATAA
*
76900477 TATTTTTA-AGA
1 TTTTTTTATA-A
76900488 TTTTTTTATAA
1 TTTTTTTATAA
*
76900499 TTTTTATATAA
1 TTTTTTTATAA
76900510 TTTTTT
1 TTTTTT
76900516 ATTGTTTGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
10 7 0.22
11 24 0.75
12 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (11 bp):
TTTTTTTATAA
Found at i:76900513 original size:21 final size:21
Alignment explanation
Indices: 76900468--76900517 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
76900458 TATATTTGTT
*
76900468 TTTTTTATATATTTTTAAGAT
1 TTTTTTATATATTTTTAAGAA
*
76900489 TTTTTTATA-ATTTTTATATAA
1 TTTTTTATATATTTTTA-AGAA
76900510 TTTTTTAT
1 TTTTTTAT
76900518 TGTTTGAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 7 0.27
21 19 0.73
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTTTTATATATTTTTAAGAA
Found at i:76900986 original size:18 final size:18
Alignment explanation
Indices: 76900952--76900988 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
76900942 TGAATTCTCA
**
76900952 AATTCAAATAACTCGAAT
1 AATTCAAATAAAACGAAT
76900970 AATTCAAATAAAACGAAT
1 AATTCAAATAAAACGAAT
76900988 A
1 A
76900989 TAAACTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.14, G:0.05, T:0.24
Consensus pattern (18 bp):
AATTCAAATAAAACGAAT
Found at i:76904694 original size:28 final size:28
Alignment explanation
Indices: 76904639--76904694 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
76904629 TTATTTTTAA
* * *
76904639 ACAAAATTACCATATTAGGTCGATTTTT
1 ACAAAATTACCAGAATAGGCCGATTTTT
76904667 ACAAAATTAACCAGAATAGGCCGATTTT
1 ACAAAATT-ACCAGAATAGGCCGATTTT
76904695 GGAGAGAGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.32
Consensus pattern (28 bp):
ACAAAATTACCAGAATAGGCCGATTTTT
Found at i:76906535 original size:94 final size:94
Alignment explanation
Indices: 76906374--76906843 Score: 841
Period size: 94 Copynumber: 5.0 Consensus size: 94
76906364 AATGTGACCG
* * *
76906374 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTAGGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
76906439 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
76906468 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCATTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
76906533 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
76906562 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTACG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
76906627 AAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
76906656 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGTG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
76906721 GAATTAAATGTCACTTAGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
76906750 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGAG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
76906815 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
76906844 GAATGTCGTT
Statistics
Matches: 361, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 361 1.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:76906905 original size:24 final size:24
Alignment explanation
Indices: 76906872--76906935 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
76906862 GAAAATTTCA
* *
76906872 AGCACTATGTGTGCG-GTTTAGTAT
1 AGCACTATGTGTGCGAGCTTAAT-T
*
76906896 GGCACTATGTGTGCGAGCTTAATT
1 AGCACTATGTGTGCGAGCTTAATT
76906920 AGCACTATGTGTGCGA
1 AGCACTATGTGTGCGA
76906936 ATTTGGTTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 30 0.86
25 5 0.14
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.33
Consensus pattern (24 bp):
AGCACTATGTGTGCGAGCTTAATT
Found at i:76908399 original size:21 final size:19
Alignment explanation
Indices: 76908357--76908409 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 19
76908347 TTAACAAATA
*
76908357 TAAAAATTATAAAAAATCT
1 TAAAAATTATAAAAAAACT
*
76908376 TAAAGAATATATAAAAAAAGT
1 TAAA-AAT-TATAAAAAAACT
76908397 TAAAAATTA-AAAA
1 TAAAAATTATAAAA
76908410 TCTAAAAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 4 0.13
19 6 0.20
20 6 0.20
21 14 0.47
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (19 bp):
TAAAAATTATAAAAAAACT
Found at i:76908880 original size:32 final size:32
Alignment explanation
Indices: 76908844--76908906 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
76908834 TCATAAACTT
* *
76908844 ATAAATGAATTACTTGAATTTAATAACTCATG
1 ATAAATGAATTAATTCAATTTAATAACTCATG
* * *
76908876 ATAAATTAATTAATTCATTTTGATAACTCAT
1 ATAAATGAATTAATTCAATTTAATAACTCAT
76908907 ACTGATTAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.43, C:0.10, G:0.06, T:0.41
Consensus pattern (32 bp):
ATAAATGAATTAATTCAATTTAATAACTCATG
Found at i:76908995 original size:16 final size:17
Alignment explanation
Indices: 76908966--76909000 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
76908956 GAAAGAATGT
76908966 AAAATAAAATATGCATA
1 AAAATAAAATATGCATA
*
76908983 AAAATAATA-ATGCATA
1 AAAATAAAATATGCATA
76908999 AA
1 AA
76909001 TCTATGATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.23
Consensus pattern (17 bp):
AAAATAAAATATGCATA
Found at i:76910162 original size:34 final size:34
Alignment explanation
Indices: 76910078--76910169 Score: 114
Period size: 34 Copynumber: 2.7 Consensus size: 34
76910068 ACATATGCGA
*
76910078 ATATCATATCAAAATGTCACATTACCAAACACAT
1 ATATCATATCAAAATGTCATATTACCAAACACAT
* * * *
76910112 ATATCAAATTAGAATGTCATATTTCCAGAA-ACAT
1 ATATCATATCAAAATGTCATATTACCA-AACACAT
*
76910146 ATATCATATCAAAATGTTATATTA
1 ATATCATATCAAAATGTCATATTA
76910170 TATCAGAACA
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
34 45 0.96
35 2 0.04
ACGTcount: A:0.46, C:0.16, G:0.05, T:0.33
Consensus pattern (34 bp):
ATATCATATCAAAATGTCATATTACCAAACACAT
Found at i:76911575 original size:13 final size:13
Alignment explanation
Indices: 76911557--76911583 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
76911547 TTAAGTTATA
76911557 TGTGTGAAAATTT
1 TGTGTGAAAATTT
76911570 TGTGTGAAAATTT
1 TGTGTGAAAATTT
76911583 T
1 T
76911584 ATCGTTTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (13 bp):
TGTGTGAAAATTT
Found at i:76912532 original size:2 final size:2
Alignment explanation
Indices: 76912525--76912551 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
76912515 AATTCGATTG
76912525 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
76912552 TAATAGTTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:76917572 original size:25 final size:25
Alignment explanation
Indices: 76917530--76917579 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
76917520 ATTTATTATT
* *
76917530 ATCATTATGAAGAATTATGTGATTA
1 ATCATTATCAAGAATTATATGATTA
* *
76917555 ATCATTATCATGAGTTATATGATTA
1 ATCATTATCAAGAATTATATGATTA
76917580 GTCCTCTAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.38, C:0.06, G:0.14, T:0.42
Consensus pattern (25 bp):
ATCATTATCAAGAATTATATGATTA
Found at i:76923165 original size:19 final size:19
Alignment explanation
Indices: 76923143--76923192 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 19
76923133 ATTTTTGAAC
76923143 AAATATAAAAAATTATA-AA
1 AAAT-TAAAAAATTATATAA
76923162 AAATCCT-AAAAA-TATATAA
1 AAAT--TAAAAAATTATATAA
76923181 AAATTAAAAAAT
1 AAATTAAAAAAT
76923193 CTAAAAAACA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 1 0.04
18 9 0.35
19 15 0.58
20 1 0.04
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (19 bp):
AAATTAAAAAATTATATAA
Found at i:76923197 original size:9 final size:9
Alignment explanation
Indices: 76923143--76923200 Score: 57
Period size: 9 Copynumber: 6.3 Consensus size: 9
76923133 ATTTTTGAAC
76923143 AAATATAAA
1 AAATATAAA
76923152 AAATTATAAA
1 AAA-TATAAA
*
76923162 AAATCCT-AA
1 AAAT-ATAAA
76923171 AAATATATAA
1 AAATATA-AA
76923181 AAAT-TAAA
1 AAATATAAA
*
76923189 AAATCTAAA
1 AAATATAAA
76923198 AAA
1 AAA
76923201 CACTTTAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
8 7 0.17
9 19 0.45
10 16 0.38
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (9 bp):
AAATATAAA
Found at i:76925606 original size:29 final size:29
Alignment explanation
Indices: 76925573--76925704 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
76925563 GTGACGAGAT
76925573 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
76925602 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
76925631 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
76925660 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
76925689 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76925705 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:76927134 original size:29 final size:29
Alignment explanation
Indices: 76927092--76927149 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
76927082 GAAGTAAGCC
76927092 CGGTAACACCTCGTGGTCAAATCCGGTGA
1 CGGTAACACCTCGTGGTCAAATCCGGTGA
76927121 CGGTAACACCTCGTGGTCAAATCCGGTGA
1 CGGTAACACCTCGTGGTCAAATCCGGTGA
76927150 TGGTCACGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.21
Consensus pattern (29 bp):
CGGTAACACCTCGTGGTCAAATCCGGTGA
Found at i:76927371 original size:24 final size:23
Alignment explanation
Indices: 76927316--76927360 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
76927306 AATTATCTTT
*
76927316 CTATAATAGCATGCTGTTATATA
1 CTATAACAGCATGCTGTTATATA
76927339 CCTATAACAGCATGCTGTTATA
1 -CTATAACAGCATGCTGTTATA
76927361 GGTATATAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (23 bp):
CTATAACAGCATGCTGTTATATA
Found at i:76927582 original size:15 final size:16
Alignment explanation
Indices: 76927562--76927592 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
76927552 TAATATATTA
76927562 ATTTTATT-TTTATAT
1 ATTTTATTATTTATAT
76927577 ATTTTATTATTTATAT
1 ATTTTATTATTTATAT
76927593 TATATACAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
ATTTTATTATTTATAT
Found at i:76928892 original size:23 final size:23
Alignment explanation
Indices: 76928862--76928906 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
76928852 GAAGAGTTAA
*
76928862 AGCTTCTTCATTTTCCACTGTAG
1 AGCTTCTTCATTGTCCACTGTAG
76928885 AGCTTCTTCATTGTCCACTGTA
1 AGCTTCTTCATTGTCCACTGTA
76928907 TATGCTAGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.18, C:0.27, G:0.13, T:0.42
Consensus pattern (23 bp):
AGCTTCTTCATTGTCCACTGTAG
Found at i:76938578 original size:23 final size:25
Alignment explanation
Indices: 76938552--76938609 Score: 84
Period size: 26 Copynumber: 2.4 Consensus size: 25
76938542 AAATATTTAT
76938552 AATGTT-T-CAATGACTACATGTAA
1 AATGTTATACAATGACTACATGTAA
*
76938575 AATGTTATAAGAATGACTACATGTAA
1 AATGTTAT-ACAATGACTACATGTAA
76938601 AATGTTATA
1 AATGTTATA
76938610 AGTGATTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 6 0.19
24 1 0.03
25 1 0.03
26 23 0.74
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (25 bp):
AATGTTATACAATGACTACATGTAA
Found at i:76938591 original size:26 final size:26
Alignment explanation
Indices: 76938560--76938611 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
76938550 ATAATGTTTC
76938560 AATGACTACATGTAAAATGTTATAAG
1 AATGACTACATGTAAAATGTTATAAG
76938586 AATGACTACATGTAAAATGTTATAAG
1 AATGACTACATGTAAAATGTTATAAG
76938612 TGATTTAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (26 bp):
AATGACTACATGTAAAATGTTATAAG
Found at i:76942327 original size:58 final size:57
Alignment explanation
Indices: 76942197--76942329 Score: 169
Period size: 58 Copynumber: 2.3 Consensus size: 57
76942187 TAATTCATAT
* **
76942197 AATAATTATATTAAGAATTTTATTAAATTATATATTATTTTATTAAATTATATTTAAC
1 AATAATTATATTAA-AATATGGTTAAATTATATATTATTTTATTAAATTATATTTAAC
* * * *
76942255 AATAATTATGTTAAAATATGGTTAAATTATTTATTATATTTATTAAATTATTTTTAAT
1 AATAATTATATTAAAATATGGTTAAATTATATATTAT-TTTATTAAATTATATTTAAC
76942313 AATAATCT-TATTAAAAT
1 AATAAT-TATATTAAAAT
76942330 TTAATAAGAA
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
57 19 0.29
58 45 0.69
59 1 0.02
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (57 bp):
AATAATTATATTAAAATATGGTTAAATTATATATTATTTTATTAAATTATATTTAAC
Found at i:76942514 original size:16 final size:16
Alignment explanation
Indices: 76942493--76942547 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
76942483 TGAATTGCTG
76942493 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
* *
76942509 ATTACATCTCTATTCA
1 ATTACAGCTCTATTCC
*
76942525 ATTATAGC-CTTATTCC
1 ATTACAGCTC-TATTCC
76942541 ATTACAG
1 ATTACAG
76942548 TGAACCAAAC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
15 1 0.03
16 31 0.97
ACGTcount: A:0.29, C:0.25, G:0.05, T:0.40
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:76945520 original size:51 final size:51
Alignment explanation
Indices: 76945391--76945521 Score: 192
Period size: 50 Copynumber: 2.6 Consensus size: 51
76945381 ATGTGTTCTG
* * * *
76945391 CATTTAATAAAGTCATGCATTATGTAACTCTTATGTTAGTTAAGTTTGCGT
1 CATTAAATTAAGTCATGCATTATGTAACTCCTATGTTAGTTAAGTTTGCAT
* *
76945442 CA-TAAATTATGACATGCATTATGTAACTCCTATGTTAGTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCTATGTTAGTTAAGTTTGCAT
*
76945492 CATTAAATTAAGTCATGCATTAAGTAACTC
1 CATTAAATTAAGTCATGCATTATGTAACTC
76945522 ATTTGTTCAT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
50 44 0.63
51 26 0.37
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.40
Consensus pattern (51 bp):
CATTAAATTAAGTCATGCATTATGTAACTCCTATGTTAGTTAAGTTTGCAT
Found at i:76948502 original size:40 final size:40
Alignment explanation
Indices: 76948447--76948664 Score: 334
Period size: 40 Copynumber: 5.5 Consensus size: 40
76948437 CGGATGATAA
* *
76948447 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
76948487 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
76948527 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
76948567 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
76948607 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
76948647 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
76948665 TACTTGGTTT
Statistics
Matches: 166, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 17 0.10
40 148 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:76950929 original size:47 final size:46
Alignment explanation
Indices: 76950837--76950930 Score: 109
Period size: 50 Copynumber: 2.0 Consensus size: 46
76950827 TCTTCTTTCC
* *
76950837 AAAAAACCCTAAATTAAACCCCAAATCCATTCTTCTCATTTTTCTT
1 AAAAAACCCTAAAATAAACCCCAAATCCATTCTTCTCATTCTTCTT
*
76950883 AAAAAATCCCTAAAATAAACCCTCCACAGTCCATTCTTCTTC-TTCTTC
1 AAAAAA-CCCTAAAATAAA-CC-CCA-AATCCATTCTTC-TCATTCTTC
76950931 ATCATCAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
46 6 0.15
47 11 0.28
48 2 0.05
49 3 0.08
50 16 0.40
51 2 0.05
ACGTcount: A:0.35, C:0.31, G:0.01, T:0.33
Consensus pattern (46 bp):
AAAAAACCCTAAAATAAACCCCAAATCCATTCTTCTCATTCTTCTT
Found at i:76950935 original size:3 final size:3
Alignment explanation
Indices: 76950929--76950985 Score: 87
Period size: 3 Copynumber: 18.0 Consensus size: 3
76950919 TTCTTCTTCT
76950929 TCA TCA TCAA TTCA TTCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TC-A -TCA -TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
76950977 TCA TCA TCA
1 TCA TCA TCA
76950986 GTTCATTCAA
Statistics
Matches: 52, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
3 44 0.85
4 6 0.12
5 2 0.04
ACGTcount: A:0.33, C:0.32, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:76950949 original size:12 final size:11
Alignment explanation
Indices: 76950928--76950991 Score: 54
Period size: 9 Copynumber: 6.5 Consensus size: 11
76950918 CTTCTTCTTC
76950928 TTCATCATCAA
1 TTCATCATCAA
76950939 TTCATTCATC-A
1 TTCA-TCATCAA
76950950 -TCATCATC-A
1 TTCATCATCAA
76950959 -TCATCATC-A
1 TTCATCATCAA
76950968 -TCATCATC-A
1 TTCATCATCAA
*
76950977 -TCATCATCAG
1 TTCATCATCAA
76950987 TTCAT
1 TTCAT
76950992 TCAAACACAC
Statistics
Matches: 49, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
9 32 0.65
10 3 0.06
11 9 0.18
12 5 0.10
ACGTcount: A:0.31, C:0.30, G:0.02, T:0.38
Consensus pattern (11 bp):
TTCATCATCAA
Found at i:76951400 original size:14 final size:14
Alignment explanation
Indices: 76951381--76951414 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
76951371 AACTAATAAT
76951381 AATAATAAATGTAA
1 AATAATAAATGTAA
76951395 AATAATAAATGTAA
1 AATAATAAATGTAA
76951409 AATAAT
1 AATAAT
76951415 CTTTCTAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (14 bp):
AATAATAAATGTAA
Found at i:76951400 original size:17 final size:15
Alignment explanation
Indices: 76951377--76951414 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
76951367 CTTTAACTAA
76951377 TAATAATAATAAATG
1 TAATAATAATAAATG
76951392 TAA-AATAATAAATG
1 TAATAATAATAAATG
76951406 TAA-AATAAT
1 TAATAATAAT
76951415 CTTTCTAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 20 0.87
15 3 0.13
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (15 bp):
TAATAATAATAAATG
Found at i:76958640 original size:48 final size:47
Alignment explanation
Indices: 76958575--76959045 Score: 347
Period size: 48 Copynumber: 9.8 Consensus size: 47
76958565 TGACATTGGG
* * * * *
76958575 TGATATGTGTGCTAGTGTAAGACCATGTTTGGAACATGGCATTGGCAA
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-A
* * *
76958623 TGTTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACGT
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-A
* * * * *
76958671 TGATAGGTGCA-CTAGTGTAAGACCATGTCTGGGACATGACATCAGCG
1 TGATATGAG-AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* * * * * *
76958718 TCGATATGTGCGCTAGTGTAAGACCATGTCTGGGACACGGGAACAGCCA
1 T-GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCA
* * * * *
76958767 -CATTATGAGGGCTAGTGTAAAACCATGTCTAGGACATGGCATCGGTA
1 TGA-TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* * * * *
76958814 TTAAGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCG
1 -TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* * * *
76958862 TCGATATGTGCGCTAGTGTAAGACCATGTCTGGGACACGGCAACGGCCA
1 T-GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CA
* * * * * *
76958911 -CATTATGAGAGCCAGTGTAAAACCATGTTTGAGACATGGCATCGACA
1 TGA-TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* * * * * * *
76958958 TTAAGACGAGAGCTAGAGTAAGACCATATCTGGGGCATGGTATCGGGC-
1 -TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCA
* * * *
76959006 TCGACATGTGAGCCAGTGTAAGACCATGTCTAGGACATGG
1 T-GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGG
76959046 AATCAACACT
Statistics
Matches: 325, Mismatches: 84, Indels: 28
0.74 0.19 0.06
Matches are distributed among these distances:
47 9 0.03
48 309 0.95
49 7 0.02
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
Found at i:76958836 original size:144 final size:144
Alignment explanation
Indices: 76958576--76959042 Score: 580
Period size: 144 Copynumber: 3.2 Consensus size: 144
76958566 GACATTGGGT
* * * * *** * **
76958576 GATATGTGTGCTAGTGTAAGACCATGTTTGGAACATGGCATTGGCAATGTTATGAGAGCTAGTGT
1 GATATGTGCGCTAGTGTAAGACCATGTCTGGGACACGGCAACAGCCACATTATGAGAGCTAGTGT
* * * * * * *
76958641 AAGACCATGTCTGGGACATGGCATCGACGTTGATAGGTGCA-CTAGTGTAAGACCATGTCTGGGA
66 AAAACCATGTCTAGGACATGGCATCGACATTAAGACGAG-AGCTAGTGTAAGACCATGTCTGGGA
*
76958705 CATGACATCAGCGTC
130 CATGGCATCAGCGTC
* *
76958720 GATATGTGCGCTAGTGTAAGACCATGTCTGGGACACGGGAACAGCCACATTATGAGGGCTAGTGT
1 GATATGTGCGCTAGTGTAAGACCATGTCTGGGACACGGCAACAGCCACATTATGAGAGCTAGTGT
**
76958785 AAAACCATGTCTAGGACATGGCATCGGTATTAAGACGAGAGCTAGTGTAAGACCATGTCTGGGAC
66 AAAACCATGTCTAGGACATGGCATCGACATTAAGACGAGAGCTAGTGTAAGACCATGTCTGGGAC
76958850 ATGGCATCAGCGTC
131 ATGGCATCAGCGTC
* *
76958864 GATATGTGCGCTAGTGTAAGACCATGTCTGGGACACGGCAACGGCCACATTATGAGAGCCAGTGT
1 GATATGTGCGCTAGTGTAAGACCATGTCTGGGACACGGCAACAGCCACATTATGAGAGCTAGTGT
* * * *
76958929 AAAACCATGT-TTGAGACATGGCATCGACATTAAGACGAGAGCTAGAGTAAGACCATATCTGGGG
66 AAAACCATGTCTAG-GACATGGCATCGACATTAAGACGAGAGCTAGTGTAAGACCATGTCTGGGA
* *
76958993 CATGGTATC-GGGCTC
130 CATGGCATCAGCG-TC
* * * *
76959008 GACATGTGAGCCAGTGTAAGACCATGTCTAGGACA
1 GATATGTGCGCTAGTGTAAGACCATGTCTGGGACA
76959043 TGGAATCAAC
Statistics
Matches: 282, Mismatches: 38, Indels: 6
0.87 0.12 0.02
Matches are distributed among these distances:
143 5 0.02
144 277 0.98
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (144 bp):
GATATGTGCGCTAGTGTAAGACCATGTCTGGGACACGGCAACAGCCACATTATGAGAGCTAGTGT
AAAACCATGTCTAGGACATGGCATCGACATTAAGACGAGAGCTAGTGTAAGACCATGTCTGGGAC
ATGGCATCAGCGTC
Found at i:76961243 original size:46 final size:44
Alignment explanation
Indices: 76961184--76961298 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
76961174 ATAGGACAGA
* *
76961184 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
76961230 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
76961274 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
76961299 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:76961279 original size:44 final size:45
Alignment explanation
Indices: 76961184--76961317 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
76961174 ATAGGACAGA
* *
76961184 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
76961230 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
76961274 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
76961318 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:76963658 original size:32 final size:32
Alignment explanation
Indices: 76963622--76963685 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
76963612 TGAGCCTATA
76963622 TTCATTTCAACAATTAAATCTTAAGTTTAGCT
1 TTCATTTCAACAATTAAATCTTAAGTTTAGCT
*
76963654 TTCATTTCAGCAATTAAATCTTAAGTTTAGCT
1 TTCATTTCAACAATTAAATCTTAAGTTTAGCT
76963686 AGTGAGTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.16, G:0.08, T:0.44
Consensus pattern (32 bp):
TTCATTTCAACAATTAAATCTTAAGTTTAGCT
Found at i:76966697 original size:28 final size:29
Alignment explanation
Indices: 76966644--76966706 Score: 119
Period size: 29 Copynumber: 2.2 Consensus size: 29
76966634 ATATCCACCC
76966644 TTAAGAAATTATAAAAAAAAGGAATTAAT
1 TTAAGAAATTATAAAAAAAAGGAATTAAT
76966673 TTAAGAAATTATAAAAAAAA-GAATTAAT
1 TTAAGAAATTATAAAAAAAAGGAATTAAT
76966701 TTAAGA
1 TTAAGA
76966707 TTTGTCTCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 14 0.41
29 20 0.59
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.29
Consensus pattern (29 bp):
TTAAGAAATTATAAAAAAAAGGAATTAAT
Found at i:76967661 original size:31 final size:31
Alignment explanation
Indices: 76967595--76967660 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
76967585 CCAACTTAAG
* *
76967595 AAAAATTGTGAAGTTTAAATATCAAATTAGA
1 AAAAAGTGTCAAGTTTAAATATCAAATTAGA
76967626 AAAAAGTGTCAAGTTTAAATA-CTAAATT-GA
1 AAAAAGTGTCAAGTTTAAATATC-AAATTAGA
76967656 AAAAA
1 AAAAA
76967661 AAATAGATAC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
30 8 0.25
31 24 0.75
ACGTcount: A:0.55, C:0.05, G:0.12, T:0.29
Consensus pattern (31 bp):
AAAAAGTGTCAAGTTTAAATATCAAATTAGA
Found at i:76967675 original size:22 final size:22
Alignment explanation
Indices: 76967644--76967685 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
76967634 TCAAGTTTAA
76967644 ATACTAAATTGAAAAAAAAATAG
1 ATACTAAATT-AAAAAAAAATAG
*
76967667 ATAC-AAATTAAGAAAAAAT
1 ATACTAAATTAAAAAAAAAT
76967686 GTGTCAGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.67, C:0.05, G:0.07, T:0.21
Consensus pattern (22 bp):
ATACTAAATTAAAAAAAAATAG
Found at i:76969119 original size:60 final size:62
Alignment explanation
Indices: 76969043--76969159 Score: 161
Period size: 61 Copynumber: 1.9 Consensus size: 62
76969033 AAACCCCCCA
76969043 AATTATTTTTTCACACAAATCTCTCA-AATT-TCTATA-ATTCTCTCAAAATTCCTTTCCCTTT
1 AATTATTTTTTCACACAAATCTCTCATAATTCTC-A-ACATTCTCTCAAAATTCCTTTCCCTTT
* * *
76969104 AATTA-TTTTTCACACAATTCTCTCATAATTCTCAACATTCTTTCAATATTCCTTTC
1 AATTATTTTTTCACACAAATCTCTCATAATTCTCAACATTCTCTCAAAATTCCTTTC
76969160 AAAAATCTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
60 20 0.40
61 28 0.56
62 2 0.04
ACGTcount: A:0.29, C:0.25, G:0.00, T:0.46
Consensus pattern (62 bp):
AATTATTTTTTCACACAAATCTCTCATAATTCTCAACATTCTCTCAAAATTCCTTTCCCTTT
Found at i:76969450 original size:48 final size:45
Alignment explanation
Indices: 76969332--76969465 Score: 153
Period size: 48 Copynumber: 2.8 Consensus size: 45
76969322 AGTGATAATT
*
76969332 TTAAATTTTCAATACTATTCGATATTATTTTAATTTATGCAAATTTAA
1 TTAAA-TTTCAATACTATT-GATATT-TTTTCATTTATGCAAATTTAA
76969380 TTAAATTTGCAATACTATTTGATATTTTATTCATTTATGC-AATTATAA
1 TTAAATTT-CAATACTA-TTGATATTTT-TTCATTTATGCAAATT-TAA
* *
76969428 TTACAATTTCAATACTGCTTGATTTTTTTTCATTTATG
1 TTA-AATTTCAATACT-ATTGATATTTTTTCATTTATG
76969466 ATGTTTGCAT
Statistics
Matches: 77, Mismatches: 3, Indels: 13
0.83 0.03 0.14
Matches are distributed among these distances:
47 19 0.25
48 51 0.66
49 7 0.09
ACGTcount: A:0.33, C:0.10, G:0.06, T:0.51
Consensus pattern (45 bp):
TTAAATTTCAATACTATTGATATTTTTTCATTTATGCAAATTTAA
Done.