Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 249 of 410
Found at i:76971077 original size:18 final size:18
Alignment explanation
Indices: 76971054--76971096 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
76971044 TGCCAGGTGC
*
76971054 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
76971072 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
76971090 GTTTCCT
1 GTATCCT
76971097 TTTCCTAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.28, G:0.09, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:76973388 original size:24 final size:24
Alignment explanation
Indices: 76973361--76973423 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
76973351 CTTATTATGT
76973361 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
76973385 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
76973409 TCGCACACATAGTGC
1 TCGCACACATAGTGC
76973424 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:76981247 original size:24 final size:24
Alignment explanation
Indices: 76981220--76981282 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
76981210 CTTATTATGT
76981220 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
76981244 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
76981268 TCGCACACATAGTGC
1 TCGCACACATAGTGC
76981283 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:76985820 original size:126 final size:127
Alignment explanation
Indices: 76985586--76985873 Score: 427
Period size: 126 Copynumber: 2.3 Consensus size: 127
76985576 GAAACATCTG
* * * *
76985586 CACTATTTGTTCAGAAACGTCTACTCAAAATTATTTTTCTATGAACTACTGTAGCAAAAGAGCGT
1 CACTATTTGTTTAGAAACATCTACTCAAAATTATTTTTCTACGAACAACTGTAGCAAAAGAGCGT
*
76985651 CCACGTGAGAGCTTTTTCCAGAAATTTTGCTGATAGTGCATCCTGCTTGAAGC-GTTTTCAA
66 CCACGTGAGAGCTTTTTCCAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCAGTTTTCAA
* * *
76985712 CACTATTTGTTTAGAAACATCTATTCAGAATTATTTTTCTACGAACAACTGTAGCAAAAGAGTGT
1 CACTATTTGTTTAGAAACATCTACTCAAAATTATTTTTCTACGAACAACTGTAGCAAAAGAGCGT
* * * *
76985777 CCACGTGGGAGCTTTTTCCAGAAATTTTGCTGACAGTGTATCCTGCTTGAAGCATTTTTCGA
66 CCACGTGAGAGCTTTTTCCAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCAGTTTTCAA
* *
76985839 CACTATTT-TTCTAGAAACGTCTGCTCAAAATTATT
1 CACTATTTGTT-TAGAAACATCTACTCAAAATTATT
76985874 CTTGCAGAAA
Statistics
Matches: 144, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
126 110 0.76
127 34 0.24
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (127 bp):
CACTATTTGTTTAGAAACATCTACTCAAAATTATTTTTCTACGAACAACTGTAGCAAAAGAGCGT
CCACGTGAGAGCTTTTTCCAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCAGTTTTCAA
Found at i:76986355 original size:15 final size:15
Alignment explanation
Indices: 76986335--76986364 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
76986325 TTAAATTTTT
76986335 TCCTAAAACCCTAAA
1 TCCTAAAACCCTAAA
*
76986350 TCCTAAAACCTTAAA
1 TCCTAAAACCCTAAA
76986365 CCTTTACAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (15 bp):
TCCTAAAACCCTAAA
Found at i:76986412 original size:29 final size:30
Alignment explanation
Indices: 76986356--76986416 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 30
76986346 TAAATCCTAA
* * *
76986356 AACCTTAAACCTTTACAAAACCCTAACCCT
1 AACCTTAAACCTATAAAAAACACTAACCCT
76986386 AACCTTAAACC-ATAAAAAACACTAACCCT
1 AACCTTAAACCTATAAAAAACACTAACCCT
76986415 AA
1 AA
76986417 ATTAATTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 17 0.61
30 11 0.39
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.20
Consensus pattern (30 bp):
AACCTTAAACCTATAAAAAACACTAACCCT
Found at i:76995213 original size:38 final size:40
Alignment explanation
Indices: 76995092--76995206 Score: 180
Period size: 40 Copynumber: 2.9 Consensus size: 40
76995082 ATTTGATGTG
*
76995092 TATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGTAAAA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
* *
76995132 TATCTGGGCTTAAAGACCCGTAGGCTTCGTGCTGGTAAAA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
*
76995172 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTA
76995207 TTATATCAGG
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
38 20 0.29
39 5 0.07
40 44 0.64
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
Found at i:76995223 original size:38 final size:38
Alignment explanation
Indices: 76995108--76995244 Score: 157
Period size: 38 Copynumber: 3.6 Consensus size: 38
76995098 GGCTTAAAGA
* * *
76995108 CCCGCAGGCTTTGTGCTGGTAAAATATCTGGGCTTAAAGA
1 CCCGCAGGCTTCGTGCTGGTAAAATATCAGGG-TTAAA-T
* *
76995148 CCCGTAGGCTTCGTGCTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAAAATATCAGGGTTAAAT
** *
76995186 CCCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTAAAATATCAGGGTTAAAT
* * *
76995224 CTCGCAGGCCTAGTGCTGGTA
1 CCCGCAGGCTTCGTGCTGGTA
76995245 TTATATTTGG
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 51 0.60
39 5 0.06
40 29 0.34
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTAAAATATCAGGGTTAAAT
Found at i:76995301 original size:43 final size:43
Alignment explanation
Indices: 76995248--76995649 Score: 583
Period size: 43 Copynumber: 9.6 Consensus size: 43
76995238 GCTGGTATTA
*
76995248 TATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
76995291 TATTCGGGCCTTCGTCCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * * *
76995334 TATTCAGGCCTTCGTACCTAGCAGGCTTCATGTCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
76995377 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * * *
76995420 TATTTGGGCCTTTGTGCCTAGCAGGCTTCGTGCCGATGATGTA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
76995463 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
76995506 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
76995549 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCC--T-A---G
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
76995586 ----CAGG-CTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
76995624 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
76995650 GTAATGCCGG
Statistics
Matches: 326, Mismatches: 22, Indels: 22
0.88 0.06 0.06
Matches are distributed among these distances:
32 25 0.08
33 3 0.01
34 1 0.00
35 1 0.00
37 1 0.00
38 1 0.00
40 1 0.00
41 1 0.00
42 3 0.01
43 289 0.89
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:76995579 original size:16 final size:16
Alignment explanation
Indices: 76995558--76995614 Score: 114
Period size: 16 Copynumber: 3.6 Consensus size: 16
76995548 GTATTCGGGC
76995558 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
76995574 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
76995590 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
76995606 CTTCGTGCC
1 CTTCGTGCC
76995615 AGTGATGTGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 41 1.00
ACGTcount: A:0.11, C:0.33, G:0.30, T:0.26
Consensus pattern (16 bp):
CTTCGTGCCTAGCAGG
Found at i:77005154 original size:52 final size:52
Alignment explanation
Indices: 77005046--77005200 Score: 143
Period size: 52 Copynumber: 3.0 Consensus size: 52
77005036 GACGGAAAAG
* * * * * *
77005046 ATGTGATATGTGTTTTCGTATAAGACCATAGCTGGGCTATGACATTGATACA
1 ATGTGATATGAGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
***
77005098 ATGTGAT-TCGAG-TTCCGGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
1 ATGTGATAT-GAGATTCC-GTATAAGACCATAGCTGGGCTATGGCATCGGTACA
* * ** *
77005150 ATGTGATAATGTGATTCCGTATAAGATCATATTTGGGATATGGCATCGGTA
1 ATGTGAT-ATGAGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTA
77005201 TGTTATGTGA
Statistics
Matches: 84, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
51 4 0.05
52 45 0.54
53 30 0.36
54 5 0.06
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.33
Consensus pattern (52 bp):
ATGTGATATGAGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
Found at i:77006011 original size:20 final size:20
Alignment explanation
Indices: 77005986--77006032 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
77005976 CAGAATTGCC
77005986 CACGGGCATGTCCCAGACCA
1 CACGGGCATGTCCCAGACCA
*
77006006 CACGGGCATGTCCCAGGCCA
1 CACGGGCATGTCCCAGACCA
*
77006026 CAGGGGC
1 CACGGGC
77006033 GTGTGCCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.21, C:0.38, G:0.32, T:0.09
Consensus pattern (20 bp):
CACGGGCATGTCCCAGACCA
Found at i:77009888 original size:21 final size:22
Alignment explanation
Indices: 77009864--77009912 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
77009854 ACTTTTTAAA
77009864 AATTTTTAAAATATTTAA-AAT
1 AATTTTTAAAATATTTAATAAT
* * *
77009885 AATTTTTTATATTTTTAATAAT
1 AATTTTTAAAATATTTAATAAT
77009907 AATTTT
1 AATTTT
77009913 AATGATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
AATTTTTAAAATATTTAATAAT
Found at i:77009907 original size:22 final size:22
Alignment explanation
Indices: 77009877--77009925 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
77009867 TTTTAAAATA
*
77009877 TTTAA-AATAATTTTTTAT-ATT
1 TTTAATAATAA-TTTTAATGATT
77009898 TTTAATAATAATTTTAATGATT
1 TTTAATAATAATTTTAATGATT
77009920 TTTAAT
1 TTTAAT
77009926 TTTTAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 11 0.44
22 14 0.56
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
TTTAATAATAATTTTAATGATT
Found at i:77011725 original size:64 final size:64
Alignment explanation
Indices: 77011624--77011766 Score: 232
Period size: 64 Copynumber: 2.2 Consensus size: 64
77011614 TCATTCATAA
* * * *
77011624 CACATCTAGTTAGGAGCTTTTGATTCATTTTAATCATAGCATCTTAATTATTTGACATAAGTAT
1 CACATCTAGTTAGGAACATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGTAT
* *
77011688 CACATCTAGTTAGGAACATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCAGTAT
1 CACATCTAGTTAGGAACATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGTAT
77011752 CACATCTAGTTAGGA
1 CACATCTAGTTAGGA
77011767 GAATTTTTAT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 73 1.00
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.38
Consensus pattern (64 bp):
CACATCTAGTTAGGAACATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGTAT
Found at i:77012181 original size:182 final size:177
Alignment explanation
Indices: 77011914--77012355 Score: 479
Period size: 182 Copynumber: 2.5 Consensus size: 177
77011904 ATCGAAGATT
* * *
77011914 ACAAACTTTATCTCCCTGAAGTTGCAGT-AGAGCAGGTTGAAGT-GACAGGTCTTATCTCCCTGA
1 ACAAACCTTATCTCCCTGAAGTTGCAGTGA-AGCAGGTTGAAGTAG-CAAGTCTTATCTCTCTGA
* * *
77011977 AGTTGCAGTGGAGCAGACTGAATGT-AGC-GAATCTTATTTCCCTGAAGATGCAGTGGAACAGAT
64 AGTTGCAGTGGAGCAGACTGAATATGA-CAG-ACCTTATCTCCCTGAAGATGCAGTGGAACAGAT
** * * *
77012040 TGAAG-CTATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTA-GAT-CATAG
127 CAAAGTC-AT-AAT---C----CTTATCTCTCTGAAGTTGCAGTAAAGTAGGATAAATAC
* *
77012097 A-AAACCTTATCTCCCTAAAGTTACAGTGAAGCAGGTTGAAGTAGCAAGTCTTATCTCTCTGAAG
1 ACAAACCTTATCTCCCTGAAGTTGCAGTGAAGCAGGTTGAAGTAGCAAGTCTTATCTCTCTGAAG
* * *
77012161 TTGCAATGGAGCAGACTGAATATGACAGACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAA
66 TTGCAGTGGAGCAGACTGAATATGACAGACCTTATCTCCCTGAAGATGCAGTGGAACAGATCAAA
*
77012226 GTCATAATCCTTATCTTTCTGAAGTTGCAGTAAAGTAGGATAAAAATAC
131 GTCATAATCCTTATCTCTCTGAAGTTGCAGTAAAGTAGGAT--AAATAC
* * *
77012275 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAACCA-ATTGAAGATAGCAAATCTTATCTCTCTGA
1 ACAAACCTTATCTCCCTGAAGTTGCAGT-GAAGCAGGTTGAAG-TAGCAAGTCTTATCTCTCTGA
*
77012339 AGTTGCAGTAGAGCAGA
64 AGTTGCAGTGGAGCAGA
77012356 TTAAAGCTAT
Statistics
Matches: 223, Mismatches: 24, Indels: 27
0.81 0.09 0.10
Matches are distributed among these distances:
174 26 0.12
175 3 0.01
178 5 0.02
179 30 0.13
180 40 0.18
181 3 0.01
182 110 0.49
183 6 0.03
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (177 bp):
ACAAACCTTATCTCCCTGAAGTTGCAGTGAAGCAGGTTGAAGTAGCAAGTCTTATCTCTCTGAAG
TTGCAGTGGAGCAGACTGAATATGACAGACCTTATCTCCCTGAAGATGCAGTGGAACAGATCAAA
GTCATAATCCTTATCTCTCTGAAGTTGCAGTAAAGTAGGATAAATAC
Found at i:77012213 original size:89 final size:87
Alignment explanation
Indices: 77012059--77012356 Score: 318
Period size: 89 Copynumber: 3.4 Consensus size: 87
77012049 AAATAAACAG
* * * *
77012059 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCATA-GA-AAACCTTATCTCCCTAAAGTTACA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAATATGACAAACCTTATCTCCCTGAAGTTGCA
*
77012122 GTGAAGCAGGTTGAAGTAGCAA
66 GTGAAGCAGATTGAAGTAGCAA
* * * *
77012144 GTCTTATCTCTCTGAAGTTGCAATGGAGCAGACTGAATATGACAGACCTTATCTCCCTGAAGTTG
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T-AATATGACAAACCTTATCTCCCTGAAGTTG
* **
77012209 CAGTGGAGCAGATCAAAGT--CATA
64 CAGTGAAGCAGATTGAAGTAGCA-A
* * * * *
77012232 ATCCTTATCTTTCTGAAGTTGCAGTAAAGTAGGATAAAAATACACAAACCTTATCTCCCTGAAGT
1 AT-CTTATCTCTCTGAAGTTGCAGTAGAGCA-GAT-AATAT-GACAAACCTTATCTCCCTGAAGT
*
77012297 TGCAGTGGAACCA-ATTGAAGATAGCAA
62 TGCAGT-GAAGCAGATTGAAG-TAGCAA
77012324 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAT
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAT
77012357 TAAAGCTATA
Statistics
Matches: 172, Mismatches: 29, Indels: 19
0.78 0.13 0.09
Matches are distributed among these distances:
85 28 0.16
86 1 0.01
87 5 0.03
88 4 0.02
89 62 0.36
90 37 0.22
91 30 0.17
92 3 0.02
93 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (87 bp):
ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAATATGACAAACCTTATCTCCCTGAAGTTGCA
GTGAAGCAGATTGAAGTAGCAA
Found at i:77012294 original size:46 final size:44
Alignment explanation
Indices: 77012146--77012356 Score: 138
Period size: 45 Copynumber: 4.7 Consensus size: 44
77012136 AGTAGCAAGT
* * ** * * * *
77012146 CTTATCTCTCTGAAGTTGCAATGGAGCAGACTGAATATGACAGAC
1 CTTATCTCCCTGAAGTTGCAGTAAAGCAGA-TAAAAATCACAAAC
** * * * *
77012191 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAGTCATAATC
1 CTTATCTCCCTGAAGTTGCAGTAAAGCAGATAAAAATCACAAAC
** *
77012235 CTTATCTTTCTGAAGTTGCAGTAAAGTAGGATAAAAATACACAAAC
1 CTTATCTCCCTGAAGTTGCAGTAAAGCA-GATAAAAAT-CACAAAC
* * * * *
77012281 CTTATCTCCCTGAAGTTGCAGTGGAACCA-ATTGAAGAT-AGCAAAT
1 CTTATCTCCCTGAAGTTGCAGT-AAAGCAGA-TAAAAATCA-CAAAC
* *
77012326 CTTATCTCTCTGAAGTTGCAGTAGAGCAGAT
1 CTTATCTCCCTGAAGTTGCAGTAAAGCAGAT
77012357 TAAAGCTATA
Statistics
Matches: 130, Mismatches: 30, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
44 35 0.27
45 62 0.48
46 30 0.23
47 3 0.02
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTAAAGCAGATAAAAATCACAAAC
Found at i:77012529 original size:44 final size:45
Alignment explanation
Indices: 77012464--77012569 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 45
77012454 AGCCACAAAC
** * ** *
77012464 CTTATC-CCCTGAAGTTGCAGTGGGGCAAGTTGAAGTTA-TGAGT
1 CTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGAGAGTGAAT
77012507 CTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGAGAGTGAAT
1 CTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGAGAGTGAAT
*
77012552 CTTATCTCTCTGAAGTTG
1 CTTATCTCCCTGAAGTTG
77012570 TAGTAGAGCA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 6 0.11
44 27 0.50
45 21 0.39
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGAGAGTGAAT
Found at i:77012931 original size:18 final size:18
Alignment explanation
Indices: 77012905--77012939 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
77012895 TTGTATCACT
77012905 GTATAATTTTGAAAACGA
1 GTATAATTTTGAAAACGA
*
77012923 GTATCATTTTGAAAACG
1 GTATAATTTTGAAAACG
77012940 CGCCCTAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (18 bp):
GTATAATTTTGAAAACGA
Found at i:77013690 original size:10 final size:10
Alignment explanation
Indices: 77013666--77013712 Score: 78
Period size: 10 Copynumber: 4.7 Consensus size: 10
77013656 CATCTCATAA
77013666 CATATCATGT
1 CATATCATGT
77013676 GCATATCATGT
1 -CATATCATGT
77013687 CATATCATGT
1 CATATCATGT
77013697 CATATCATGT
1 CATATCATGT
77013707 -ATATCA
1 CATATCA
77013713 AAATCTCATG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.17
10 20 0.56
11 10 0.28
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (10 bp):
CATATCATGT
Found at i:77013690 original size:21 final size:21
Alignment explanation
Indices: 77013646--77013712 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
77013636 TATAATGAAT
* * **
77013646 ATATCTTGTGCATCTCATAAC
1 ATATCATGTGCATATCATGTC
77013667 ATATCATGTGCATATCATGTC
1 ATATCATGTGCATATCATGTC
77013688 ATATCATGT-CATATCATGT-
1 ATATCATGTGCATATCATGTC
77013707 ATATCA
1 ATATCA
77013713 AAATCTCATG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.14
20 10 0.24
21 26 0.62
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.39
Consensus pattern (21 bp):
ATATCATGTGCATATCATGTC
Found at i:77018184 original size:11 final size:10
Alignment explanation
Indices: 77018168--77018204 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
77018158 CATCTCATAA
77018168 CATATCATGT
1 CATATCATGT
77018178 GCATATCATGT
1 -CATATCATGT
77018189 CATATCATGT
1 CATATCATGT
77018199 -ATATCA
1 CATATCA
77018205 AAATCTCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.23
10 10 0.38
11 10 0.38
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (10 bp):
CATATCATGT
Found at i:77018192 original size:21 final size:21
Alignment explanation
Indices: 77018134--77018198 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
77018124 ACCCAACCCA
* * *
77018134 TGCATATAATGAATATATCTTG
1 TGCATATCAT-AACATATCATG
*
77018156 TGCATCTCATAACATATCATG
1 TGCATATCATAACATATCATG
**
77018177 TGCATATCATGTCATATCATG
1 TGCATATCATAACATATCATG
77018198 T
1 T
77018199 ATATCAAAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
21 28 0.78
22 8 0.22
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.38
Consensus pattern (21 bp):
TGCATATCATAACATATCATG
Found at i:77020310 original size:44 final size:44
Alignment explanation
Indices: 77020186--77020339 Score: 134
Period size: 44 Copynumber: 3.5 Consensus size: 44
77020176 CCATGGTGAA
** * * ** *
77020186 TCTTATCTCCCTGAAGTTTTAGTGGAGTAGATTAAAGCCACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAG
* * *
77020230 CCTTATC-CCCTTGAAGTTGCAGTGGGGCA-AGTTGAAGTTACAAG
1 TCTTATCTCCC-TGAAGTTGCAGTGGAGCAGA-TTGAAGATACAAG
* *
77020274 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTGAAGATAGC-AG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAG
*
77020318 ATCTTATCTCCTTGAAGTTGCA
1 -TCTTATCTCCCTGAAGTTGCA
77020340 ATAAAGCAGA
Statistics
Matches: 89, Mismatches: 15, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
43 4 0.04
44 60 0.67
45 25 0.28
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAG
Found at i:77022204 original size:45 final size:46
Alignment explanation
Indices: 77022150--77022262 Score: 149
Period size: 46 Copynumber: 2.5 Consensus size: 46
77022140 TCAGATTTTC
* *
77022150 TTTTATATATTATATATTTTAAACTCTATAT-TTTATTTTAAATTG
1 TTTTATATATTATATATTTTAAACTCTATATATTTATTTTAAAATA
*
77022195 TTTTATATA-TATATATATTTAAACTCTATTTATTTATTTTAAAATA
1 TTTTATATATTATATAT-TTTAAACTCTATATATTTATTTTAAAATA
* **
77022241 TTTTATTTATTATCCATTTTAA
1 TTTTATATATTATATATTTTAA
77022263 GATTTTTTCA
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
44 7 0.12
45 22 0.37
46 25 0.42
47 5 0.08
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.59
Consensus pattern (46 bp):
TTTTATATATTATATATTTTAAACTCTATATATTTATTTTAAAATA
Found at i:77022546 original size:21 final size:20
Alignment explanation
Indices: 77022516--77022554 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
77022506 ATATCATTAC
77022516 TTGTATTATG-ATTCATTTAT
1 TTGTATTATGTATT-ATTTAT
77022536 TTGTAATTATGTATTATTT
1 TTGT-ATTATGTATTATTT
77022555 TCGTTCATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.24
21 10 0.59
22 3 0.18
ACGTcount: A:0.26, C:0.03, G:0.10, T:0.62
Consensus pattern (20 bp):
TTGTATTATGTATTATTTAT
Found at i:77024450 original size:2 final size:2
Alignment explanation
Indices: 77024445--77024479 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
77024435 ACACACGCAC
77024445 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
77024480 GAAAAGAGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:77025331 original size:12 final size:13
Alignment explanation
Indices: 77025299--77025349 Score: 50
Period size: 12 Copynumber: 3.8 Consensus size: 13
77025289 TAGTTTAAAA
*
77025299 TTTTTAGTTTTTAC
1 TTTTTA-TTTTTGC
*
77025313 TTATTATTTTT-C
1 TTTTTATTTTTGC
77025325 TTTTTATTTTTGGC
1 TTTTTATTTTT-GC
77025339 TTGTTTATTTT
1 TT-TTTATTTT
77025350 CGATCCTATC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
12 11 0.34
13 5 0.16
14 8 0.25
15 8 0.25
ACGTcount: A:0.12, C:0.06, G:0.08, T:0.75
Consensus pattern (13 bp):
TTTTTATTTTTGC
Found at i:77029406 original size:18 final size:18
Alignment explanation
Indices: 77029380--77029415 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
77029370 ATTCACTTCT
*
77029380 TGATTAATGATAGGTATG
1 TGATCAATGATAGGTATG
77029398 TGATCAATGATAGGTATG
1 TGATCAATGATAGGTATG
77029416 AGAACCTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.03, G:0.28, T:0.36
Consensus pattern (18 bp):
TGATCAATGATAGGTATG
Found at i:77033957 original size:2 final size:2
Alignment explanation
Indices: 77033950--77033980 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
77033940 ATGTTTGATA
77033950 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
77033981 GAGTAATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:77039486 original size:82 final size:82
Alignment explanation
Indices: 77039398--77039598 Score: 296
Period size: 82 Copynumber: 2.5 Consensus size: 82
77039388 AAGTCTTCGC
* * * * * *
77039398 TTGGAAACAAAATTAAGA-TCGAATATAATCTGTTAAACAGTGGGAATAAATCCCAAAACAGATT
1 TTGGAAACAAAATCAAAACT-GAATAAAATCTATTAAACAGCGAGAATAAATCCCAAAACAGATT
77039462 ATTCAATTCAATTCTAAT
65 ATTCAATTCAATTCTAAT
*
77039480 TTGGAAACAAAATCAAAACTGAATAAAATCTATTAAACAGCGAGAATAAATCCCGAAACAGATTA
1 TTGGAAACAAAATCAAAACTGAATAAAATCTATTAAACAGCGAGAATAAATCCCAAAACAGATTA
77039545 TTCAATTCAATTCTAAT
66 TTCAATTCAATTCTAAT
* * *
77039562 TTGGTAACAAAATCAAAACTAAATAAAATCTGTTAAA
1 TTGGAAACAAAATCAAAACTGAATAAAATCTATTAAA
77039599 AACAGATTTC
Statistics
Matches: 108, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
82 107 0.99
83 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.27
Consensus pattern (82 bp):
TTGGAAACAAAATCAAAACTGAATAAAATCTATTAAACAGCGAGAATAAATCCCAAAACAGATTA
TTCAATTCAATTCTAAT
Found at i:77039744 original size:87 final size:86
Alignment explanation
Indices: 77039627--77040028 Score: 404
Period size: 87 Copynumber: 4.6 Consensus size: 86
77039617 TAATTTCTCA
* * * * *
77039627 TTTGGCAACTAAATAAAAAAATGGAATAAAATTTGTTGAACAACGGGAATAAATCCCGAAACAGA
1 TTTGGAAACAAAAT-AAAAAATAGAATAAAATCTGTTGAACGACGGGAATAAATCCCGAAACAGA
*
77039692 TTTTAATTAATTTTAATACTTAT
65 TTTTAATTAATTTTAACA-TTAT
* *
77039715 TTTGGAAACAAAATAAAAAATAGAATAAAATCTGTTGAACGACGGGAATAAATCTCGAAACATAT
1 TTTGGAAACAAAATAAAAAATAGAATAAAATCTGTTGAACGACGGGAATAAATCCCGAAACAGAT
* *
77039780 TTTATTTAATTTTAACATTCGT
66 TTTAATTAATTTTAACATT-AT
* * *
77039802 TTTGGAAATAAAATAAAAAATAGAATAAAATTTGTTGAACGACAGGAATAAATAATAAATCCCGA
1 TTTGGAAACAAAATAAAAAATAGAATAAAATCTGTTGAACGAC-GG------GAATAAATCCCGA
* *
77039867 AATAGATTTT-ATTCACTTTT---A--A-
59 AACAGATTTTAATT-AATTTTAACATTAT
* **
77039889 TTTGGAAACAAAATAAAAAATAGAATAAAATCTGTAGAACGGGGGGAATAAATCCCGAAACAGAT
1 TTTGGAAACAAAATAAAAAATAGAATAAAATCTGTTGAACGACGGGAATAAATCCCGAAACAGAT
* **
77039954 TTTATTTAATTTTAACACTCGT
66 TTTAATTAATTTTAACA-TTAT
* * * * * *
77039976 TTTGAAAATAAAATCAAAATTTGAATAAAATATGTTGAACGACGGGAATAAAT
1 TTTGGAAACAAAATAAAAAATAGAATAAAATCTGTTGAACGACGGGAATAAAT
77040029 AATAAATCCT
Statistics
Matches: 259, Mismatches: 38, Indels: 35
0.78 0.11 0.11
Matches are distributed among these distances:
80 26 0.10
81 2 0.01
83 1 0.00
86 4 0.02
87 185 0.71
88 14 0.05
91 1 0.00
93 2 0.01
94 24 0.09
ACGTcount: A:0.47, C:0.09, G:0.13, T:0.30
Consensus pattern (86 bp):
TTTGGAAACAAAATAAAAAATAGAATAAAATCTGTTGAACGACGGGAATAAATCCCGAAACAGAT
TTTAATTAATTTTAACATTAT
Found at i:77039899 original size:174 final size:174
Alignment explanation
Indices: 77039715--77040076 Score: 580
Period size: 174 Copynumber: 2.1 Consensus size: 174
77039705 TAATACTTAT
* * *
77039715 TTTGGAAACAAAATAAAAAATAGAATAAAATCTGTTGAACGACGGGAATAAATCTCGAAACATAT
1 TTTGGAAACAAAATAAAAAATAGAATAAAATCTGTAGAACGACGGGAATAAATCCCGAAACAGAT
* * *
77039780 TTTATTTAATTTTAACATTCGTTTTGGAAATAAAATAAAAAATAGAATAAAATTTGTTGAACGAC
66 TTTATTTAATTTTAACACTCGTTTTGAAAATAAAATAAAAAATAGAATAAAATATGTTGAACGAC
*
77039845 AGGAATAAATAATAAATCCCGAAATAGATTTTATTCACTTTTAA
131 AGGAATAAATAATAAATCCCGAAACAGATTTTATTCACTTTTAA
**
77039889 TTTGGAAACAAAATAAAAAATAGAATAAAATCTGTAGAACGGGGGGAATAAATCCCGAAACAGAT
1 TTTGGAAACAAAATAAAAAATAGAATAAAATCTGTAGAACGACGGGAATAAATCCCGAAACAGAT
* * *
77039954 TTTATTTAATTTTAACACTCGTTTTGAAAATAAAATCAAAATTTGAATAAAATATGTTGAACGAC
66 TTTATTTAATTTTAACACTCGTTTTGAAAATAAAATAAAAAATAGAATAAAATATGTTGAACGAC
* * * *
77040019 GGGAATAAATAATAAATCCTGAAACATATTTTGTTCACTTTTAA
131 AGGAATAAATAATAAATCCCGAAACAGATTTTATTCACTTTTAA
77040063 TTTGGAAACAAAAT
1 TTTGGAAACAAAAT
77040077 CAAATAAAAT
Statistics
Matches: 172, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
174 172 1.00
ACGTcount: A:0.46, C:0.10, G:0.13, T:0.31
Consensus pattern (174 bp):
TTTGGAAACAAAATAAAAAATAGAATAAAATCTGTAGAACGACGGGAATAAATCCCGAAACAGAT
TTTATTTAATTTTAACACTCGTTTTGAAAATAAAATAAAAAATAGAATAAAATATGTTGAACGAC
AGGAATAAATAATAAATCCCGAAACAGATTTTATTCACTTTTAA
Found at i:77040080 original size:87 final size:87
Alignment explanation
Indices: 77039802--77040076 Score: 276
Period size: 87 Copynumber: 3.2 Consensus size: 87
77039792 TAACATTCGT
* * *
77039802 TTTGGAAATAAAATAAAAAATAGAATAAAATTTGTTGAACGACAGGAATAAATAATAAATCCCGA
1 TTTGGAAACAAAATAAAAAATAGAATAAAATATGTTGAACGACGGGAATAAATAATAAATCCCGA
*
77039867 AATAGATTTTATTCACTTTTAA
66 AACAGATTTTATTCACTTTTAA
* * **
77039889 TTTGGAAACAAAATAAAAAATAGAATAAAATCTGTAGAACG--GGG-----GGAATAAATCCCGA
1 TTTGGAAACAAAATAAAAAATAGAATAAAATATGTTGAACGACGGGAATAAATAATAAATCCCGA
* *
77039947 AACAGATTTTATTTAATTTTAACA
66 AACAGATTTTATTCACTTTT-A-A
* * * * *
77039971 CTCGTTTTGAAAATAAAATCAAAATTTGAATAAAATATGTTGAACGACGGGAATAAATAATAAAT
1 -----TTTGGAAACAAAATAAAAAATAGAATAAAATATGTTGAACGACGGGAATAAATAATAAAT
* * *
77040036 CCTGAAACATATTTTGTTCACTTTTAA
61 CCCGAAACAGATTTTATTCACTTTTAA
77040063 TTTGGAAACAAAAT
1 TTTGGAAACAAAAT
77040077 CAAATAAAAT
Statistics
Matches: 149, Mismatches: 25, Indels: 28
0.74 0.12 0.14
Matches are distributed among these distances:
80 29 0.19
81 1 0.01
82 1 0.01
85 2 0.01
87 84 0.56
89 3 0.02
92 1 0.01
93 1 0.01
94 27 0.18
ACGTcount: A:0.47, C:0.09, G:0.13, T:0.31
Consensus pattern (87 bp):
TTTGGAAACAAAATAAAAAATAGAATAAAATATGTTGAACGACGGGAATAAATAATAAATCCCGA
AACAGATTTTATTCACTTTTAA
Found at i:77040291 original size:21 final size:22
Alignment explanation
Indices: 77040265--77040305 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
77040255 GTTAGCAAAT
*
77040265 AACTATATCTAT-AAATAAAAA
1 AACTATATATATAAAATAAAAA
*
77040286 AACTATTTATATAAAATAAA
1 AACTATATATATAAAATAAA
77040306 TTAAATTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (22 bp):
AACTATATATATAAAATAAAAA
Found at i:77040770 original size:20 final size:19
Alignment explanation
Indices: 77040741--77040791 Score: 68
Period size: 20 Copynumber: 2.7 Consensus size: 19
77040731 TTAAAGTAGC
* *
77040741 AAATAAATCAATTTGATTA
1 AAATAAATCAAATTAATTA
77040760 AAATCAAATCAAATTAATTA
1 AAAT-AAATCAAATTAATTA
77040780 AAA-AAATCAAAT
1 AAATAAATCAAAT
77040792 AAATCAAGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 9 0.31
19 4 0.14
20 16 0.55
ACGTcount: A:0.61, C:0.08, G:0.02, T:0.29
Consensus pattern (19 bp):
AAATAAATCAAATTAATTA
Found at i:77044047 original size:22 final size:22
Alignment explanation
Indices: 77044021--77044102 Score: 82
Period size: 22 Copynumber: 3.8 Consensus size: 22
77044011 TTTTTCTTAG
77044021 ATTA-TATTA-TATATATATAATT
1 ATTATTATTATTAT-TAT-TAATT
77044043 ATTATTATTATTATTATTAATT
1 ATTATTATTATTATTATTAATT
**
77044065 ATTATTATTATGGTT-TTATATT
1 ATTATTATTATTATTATTA-ATT
*
77044087 A-AATTATTATTATTAT
1 ATTATTATTATTATTAT
77044103 GGTTTTATAT
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
21 13 0.25
22 27 0.53
23 8 0.16
24 3 0.06
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
ATTATTATTATTATTATTAATT
Found at i:77044048 original size:3 final size:3
Alignment explanation
Indices: 77044021--77044102 Score: 73
Period size: 3 Copynumber: 27.7 Consensus size: 3
77044011 TTTTTCTTAG
*
77044021 ATT A-T ATT ATAT ATAT ATA ATT ATT ATT ATT ATT ATT ATT AATT ATT
1 ATT ATT ATT AT-T AT-T ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT
* * *
77044068 ATT ATT ATG GTT -TT A-T ATT A-A ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
77044103 GGTTTTATAT
Statistics
Matches: 66, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
2 7 0.11
3 49 0.74
4 10 0.15
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:77044091 original size:27 final size:27
Alignment explanation
Indices: 77044040--77044124 Score: 131
Period size: 27 Copynumber: 3.2 Consensus size: 27
77044030 TATATATATA
*
77044040 ATTATTATTAT--TATTATTATT-AATT
1 ATTATTATTATGGTTTTA-TATTAAATT
77044065 ATTATTATTATGGTTTTATATTAAATT
1 ATTATTATTATGGTTTTATATTAAATT
77044092 ATTATTATTATGGTTTTATATTAAATT
1 ATTATTATTATGGTTTTATATTAAATT
77044119 ATTATT
1 ATTATT
77044125 TTTAAATAAA
Statistics
Matches: 56, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
25 11 0.20
26 4 0.07
27 41 0.73
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (27 bp):
ATTATTATTATGGTTTTATATTAAATT
Found at i:77044123 original size:13 final size:14
Alignment explanation
Indices: 77044040--77044131 Score: 72
Period size: 13 Copynumber: 6.9 Consensus size: 14
77044030 TATATATATA
77044040 ATTATTATT--ATT
1 ATTATTATTAAATT
77044052 ATTATTATT-AATT
1 ATTATTATTAAATT
**
77044065 ATTATTATTATGGTT
1 ATTATTATTA-AATT
77044080 -TTA-TATTAAATT
1 ATTATTATTAAATT
**
77044092 ATTATTATTATGGTT
1 ATTATTATTA-AATT
77044107 -TTA-TATTAAATT
1 ATTATTATTAAATT
*
77044119 ATTATTTTTAAAT
1 ATTATTATTAAAT
77044132 AAATTAAAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 14
0.73 0.10 0.16
Matches are distributed among these distances:
12 13 0.21
13 28 0.44
14 18 0.29
15 4 0.06
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (14 bp):
ATTATTATTAAATT
Found at i:77044918 original size:17 final size:18
Alignment explanation
Indices: 77044896--77044929 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
77044886 TAAATGAGTT
77044896 AATTAGGAT-TAAATTGA
1 AATTAGGATATAAATTGA
*
77044913 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
77044930 GATAGAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.44, C:0.00, G:0.21, T:0.35
Consensus pattern (18 bp):
AATTAGGATATAAATTGA
Found at i:77045749 original size:4 final size:4
Alignment explanation
Indices: 77045736--77045765 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
77045726 GAAGAATAGC
77045736 TAAA -AAA TAAA TAAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA
77045766 TTGTATTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
TAAA
Found at i:77052505 original size:17 final size:18
Alignment explanation
Indices: 77052483--77052518 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
77052473 TAAATGAGTT
77052483 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
77052500 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
77052518 A
1 A
77052519 TAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:77057835 original size:5 final size:5
Alignment explanation
Indices: 77057825--77057861 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
77057815 TTGTGTGTTC
77057825 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
77057862 TCACAAATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:77060862 original size:40 final size:39
Alignment explanation
Indices: 77060771--77060881 Score: 127
Period size: 40 Copynumber: 2.8 Consensus size: 39
77060761 ATAACCATGT
* *
77060771 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
77060811 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
*
77060851 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
77060882 TAATTTCCAG
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
38 1 0.02
39 4 0.06
40 57 0.92
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:77060905 original size:80 final size:79
Alignment explanation
Indices: 77060771--77060919 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
77060761 ATAACCATGT
* *
77060771 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATACCTTCGGG-CTTAGCC
77060836 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
77060851 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTATCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TACCTTCGGGCTTAGC
77060914 CCGGAT
64 CCGGAT
77060920 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 15 0.25
80 45 0.75
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATACCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:77068798 original size:40 final size:39
Alignment explanation
Indices: 77068753--77068882 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
77068743 CGGAATATAA
77068753 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
77068793 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
77068833 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
77068873 CCGGATATAA
1 CCGGATATAA
77068883 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:77068897 original size:40 final size:40
Alignment explanation
Indices: 77068769--77068920 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
77068759 ATAACCATGT
* * *
77068769 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
77068809 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
77068849 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
77068889 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
77068921 CATTCAATTT
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.02
40 87 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:77068903 original size:80 final size:80
Alignment explanation
Indices: 77068769--77068918 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
77068759 ATAACCATGT
* *
77068769 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
77068834 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
77068849 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
77068912 CCCGGAT
64 CCCGGAT
77068919 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:77076753 original size:40 final size:39
Alignment explanation
Indices: 77076708--77076837 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
77076698 CGGAATATAA
77076708 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
77076748 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
77076788 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
77076828 CCGGATATAA
1 CCGGATATAA
77076838 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:77076852 original size:40 final size:40
Alignment explanation
Indices: 77076724--77076874 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
77076714 ATAACCATGT
* * *
77076724 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
77076764 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
77076804 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
77076844 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
77076875 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 15 0.16
40 74 0.81
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:77076858 original size:80 final size:79
Alignment explanation
Indices: 77076724--77076872 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
77076714 ATAACCATGT
*
77076724 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
77076789 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
77076804 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
77076867 CCGGAT
64 CCGGAT
77076873 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:77083115 original size:40 final size:40
Alignment explanation
Indices: 77083022--77083238 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
77083012 AAGCCAAGTA
* * *
77083022 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
77083060 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77083100 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
77083140 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
77083180 CCTTCGGGACTTAGCCTGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
77083220 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77083239 TTATCATCCG
Statistics
Matches: 160, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
38 12 0.08
39 17 0.11
40 131 0.82
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77092824 original size:40 final size:39
Alignment explanation
Indices: 77092736--77092884 Score: 203
Period size: 39 Copynumber: 3.8 Consensus size: 39
77092726 GGATATAGCT
*
77092736 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGTA
77092775 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-TTAGTA
* *
77092815 ACTCGCACAAATGCCTTC-GGACTT-GCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATTAGTA
* * * *
77092853 ACTAGCGCAGATGCCTTTGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
77092885 TTATCATCCA
Statistics
Matches: 99, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
38 24 0.24
39 45 0.45
40 30 0.30
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGTA
Found at i:77097539 original size:18 final size:18
Alignment explanation
Indices: 77097516--77097553 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
77097506 AATATATATT
*
77097516 AACCCAAGTACCCAACCC
1 AACCCAAGTACACAACCC
*
77097534 AACCCAATTACACAACCC
1 AACCCAAGTACACAACCC
77097552 AA
1 AA
77097554 TCATAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.45, C:0.45, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACACAACCC
Found at i:77097652 original size:9 final size:9
Alignment explanation
Indices: 77097638--77097705 Score: 100
Period size: 9 Copynumber: 7.6 Consensus size: 9
77097628 TTTATACAAA
77097638 TAATTCGGT
1 TAATTCGGT
77097647 TAATTCGGT
1 TAATTCGGT
77097656 TAATTCGGT
1 TAATTCGGT
77097665 TAATTCGGT
1 TAATTCGGT
* * *
77097674 TGATTTGGG
1 TAATTCGGT
*
77097683 TAATTCGGG
1 TAATTCGGT
77097692 TAATTCGGT
1 TAATTCGGT
77097701 TAATT
1 TAATT
77097706 TTATACTTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 53 1.00
ACGTcount: A:0.22, C:0.09, G:0.25, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:77098289 original size:36 final size:35
Alignment explanation
Indices: 77098178--77098289 Score: 97
Period size: 36 Copynumber: 3.1 Consensus size: 35
77098168 ATAATTTGGC
*
77098178 AGCTGGGAGCTTTTAACTCTCACTAA-TTGTGTTAGA
1 AGCTGGGAGTTTTTAACTCTCACTAACTTGT-TTA-A
* * * *
77098214 AGCTGTG-GTTTTAAAC-CT-ACGAGCCTTAGTTTAA
1 AGCTGGGAGTTTTTAACTCTCACTA-ACTT-GTTTAA
77098248 TAGCTGGGAGTTTTTAACTCTCACTAACTATGTTTAA
1 -AGCTGGGAGTTTTTAACTCTCACTAACT-TGTTTAA
77098285 AGCTG
1 AGCTG
77098290 TAGTTTTGAT
Statistics
Matches: 59, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
33 3 0.05
34 3 0.05
35 18 0.31
36 21 0.36
37 10 0.17
38 4 0.07
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.37
Consensus pattern (35 bp):
AGCTGGGAGTTTTTAACTCTCACTAACTTGTTTAA
Found at i:77098471 original size:71 final size:71
Alignment explanation
Indices: 77098093--77098751 Score: 467
Period size: 71 Copynumber: 9.3 Consensus size: 71
77098083 TGGACTTGGA
** * * *
77098093 AGCCTTAAGT-TGACAGCTGGGAGCTTT-TAACTCTTGCTAACTGTGTTGGAGGCCGTGGTTTTG
1 AGCCTTAA-TATGACAGCTGGGAG-TTTGTAACTCTCACTAACTGTGTTAGAGGCTGTGATTTT-
*
77098156 AA-CCT-GG
63 AATCCTACG
* * * * * *
77098163 TAGCCATAATTTGGCAGCTGGGAGCTTT-TAACTCTCACTAATTGTGTTAGAAGCTGTGGTTTTA
1 -AGCCTTAATATGACAGCTGGGAG-TTTGTAACTCTCACTAACTGTGTTAGAGGCTGTGATTTTA
*
77098227 AACCTACG
64 ATCCTACG
* * * * * * * *
77098235 AGCCTTAGTTTAATAGCTGGGAGTTTTTAACTCTCACTAACTATGTTTA-AAGCTGT-AGTTTTG
1 AGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCACTAACTGTG-TTAGAGGCTGTGA-TTTTA
*
77098298 ATCCTATG
64 ATCCTACG
* * *
77098306 AGCCTTAATATGATAGTTGGGAGTTTGTAACTCTCACTAACTGTGTTAGAGGTTGT-AGTTTTAA
1 AGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTGTGA-TTTTAA
*
77098370 TCCTGCG
65 TCCTACG
* * * * *
77098377 AGCCTTAATAAGATAGTTGGGAGTTTGTAGCTCTCACTAACTGTGTTAGAGGCTTTGATTTTAAT
1 AGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTGTGATTTTAAT
77098442 CCTACG
66 CCTACG
* * * ** * * * *
77098448 AGCCTTAATGTGACAGCTAGGAGTTTGCAACTCTTGCTAATTGTGTTGGAGGCTACTG-TTTTGA
1 AGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCT-GTGATTTTAA
77098512 TCCTACG
65 TCCTACG
* * * * * * * * * * **
77098519 AACCTTAATATAACAACTAGGAGCTTGCAACTCTCACTAACTATGTTAGAAGATGCGGCTTTAAT
1 AGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTGTGATTTTAAT
* *
77098584 CTTGCG
66 CCTACG
* * * * * * *
77098590 AGCCTTAATATAACAACTAGGAGTTTGTAATTCTCGCTAACTGTGTTGGAGG-T-TACAGTTTTA
1 AGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTGT-GA-TTTTA
***
77098653 ATCCCGTG
64 ATCCTACG
* * * ** * * *
77098661 AGCCTTAACATGACAGTTGAGAGTTTGTAACTCTGGCTAACTGTGTTAGAGGCTGCGGTTTTGAT
1 AGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTGTGATTTTAAT
* *
77098726 CCTTCA
66 CCTACG
*
77098732 AACCTTAATATGACAGCTGG
1 AGCCTTAATATGACAGCTGG
77098752 AAGCCTTAAT
Statistics
Matches: 471, Mismatches: 103, Indels: 28
0.78 0.17 0.05
Matches are distributed among these distances:
70 11 0.02
71 452 0.96
72 8 0.02
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (71 bp):
AGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTGTGATTTTAAT
CCTACG
Found at i:77098615 original size:213 final size:212
Alignment explanation
Indices: 77098183--77098742 Score: 518
Period size: 213 Copynumber: 2.6 Consensus size: 212
77098173 TTGGCAGCTG
* * * * * * * *
77098183 GGAGCTTT-TAACTCTCACTAATTGTGTTAGAAGCTGTGGTTTTAAACCTACGAGCCTTAGTTTA
1 GGAG-TTTGTAACTCTCACTAACTGTGTTAGAGGCTTTGATTTTAATCCTACGAGCCTTAATATG
* * * * * * * * *
77098247 ATAGCTGGGAGTTTTTAACTCTCACTAACTATGTTTA-AAGCTGTAGTTTTGATCCTATGAGCCT
65 ACAGCTAGGAGTTTGTAACTCTCGCTAACTGTG-TTAGAGGCTCT-GTTTTGATCCTACGAACCT
* * ** * * * * * * * *
77098311 TAATATGATAGTTGGGAGTTTGTAACTCTCACTAACTGTGTTAGAGGTTGTAGTTTTAATCCTGC
128 TAATATAACAACTAGGAGCTTGCAACTCTCACTAACTATGTTAGAAGATGCAGCTTTAATCCTGC
* ** *
77098376 GAGCCTTAATAAGATAGTTG
193 GAGCCTTAATAAGACAACTA
* *
77098396 GGAGTTTGTAGCTCTCACTAACTGTGTTAGAGGCTTTGATTTTAATCCTACGAGCCTTAATGTGA
1 GGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTTTGATTTTAATCCTACGAGCCTTAATATGA
* * * *
77098461 CAGCTAGGAGTTTGCAACTCTTGCTAATTGTGTTGGAGGCTACTGTTTTGATCCTACGAACCTTA
66 CAGCTAGGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCT-CTGTTTTGATCCTACGAACCTTA
* *
77098526 ATATAACAACTAGGAGCTTGCAACTCTCACTAACTATGTTAGAAGATGCGGCTTTAATCTTGCGA
130 ATATAACAACTAGGAGCTTGCAACTCTCACTAACTATGTTAGAAGATGCAGCTTTAATCCTGCGA
77098591 GCCTTAATATA-ACAACTA
195 GCCTTAATA-AGACAACTA
* * * ** *** *
77098609 GGAGTTTGTAATTCTCGCTAACTGTGTTGGAGG-TTACAGTTTTAATCCCGTGAGCCTTAACATG
1 GGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTTTGA-TTTTAATCCTACGAGCCTTAATATG
* * * * *
77098673 ACAG-TTGAGAGTTTGTAACTCTGGCTAACTGTGTTAGAGGCTGCGGTTTTGATCCTTCAAACCT
65 ACAGCTAG-GAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCT-CTGTTTTGATCCTACGAACCT
77098737 TAATAT
128 TAATAT
77098743 GACAGCTGGA
Statistics
Matches: 281, Mismatches: 60, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
212 10 0.04
213 269 0.96
214 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (212 bp):
GGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTTTGATTTTAATCCTACGAGCCTTAATATGA
CAGCTAGGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTCTGTTTTGATCCTACGAACCTTAA
TATAACAACTAGGAGCTTGCAACTCTCACTAACTATGTTAGAAGATGCAGCTTTAATCCTGCGAG
CCTTAATAAGACAACTA
Found at i:77098820 original size:92 final size:92
Alignment explanation
Indices: 77098661--77098846 Score: 266
Period size: 92 Copynumber: 2.0 Consensus size: 92
77098651 TAATCCCGTG
** * *
77098661 AGCCTTAACATGACAGTTGAGAGTTTGTAACTCTGGCTAACTGTGTTAGAGGCTGCGGTTTTGAT
1 AGCCTTAACATGACAGTTGAGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTGCAGTTTTAAT
77098726 CCT-TCAAACCTTAATATGACAGCTGGA
66 CCTGT-AAACCTTAATATGACAGCTGGA
* * * * *
77098753 AGCCTTAATATGATAGTTGGGAGTTTGTAACTCTCACTAATTGTGTTGGAGGCTGCAGTTTTAAT
1 AGCCTTAACATGACAGTTGAGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTGCAGTTTTAAT
*
77098818 CCTGTAAGCCTTAATATGACAGCTGGA
66 CCTGTAAACCTTAATATGACAGCTGGA
77098845 AG
1 AG
77098847 TTTGTAACTC
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
92 82 0.99
93 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (92 bp):
AGCCTTAACATGACAGTTGAGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTGCAGTTTTAAT
CCTGTAAACCTTAATATGACAGCTGGA
Found at i:77098869 original size:71 final size:71
Alignment explanation
Indices: 77098752--77099192 Score: 366
Period size: 71 Copynumber: 6.2 Consensus size: 71
77098742 TGACAGCTGG
* * * * *
77098752 AAGCCTTAATATGATAGTTGGGAGTTTGTAACTCTCACTAATTGTGTTGGAGGCTGCAGTTTTAA
1 AAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCAGTTTTAA
*
77098817 TCCTGT
66 TCCTGC
* * * ** *
77098823 AAGCCTTAATATGACAGCTGGAAGTTTGTAACTCTCGCTAACTGTGTTGGAGGTTGTGGTTTTGA
1 AAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCAGTTTTAA
*
77098888 TCCTGT
66 TCCTGC
* * * * * * * * * *
77098894 GAGCTTTAATGTGACAGCTAGGAATTTGCAACTTTCGCTAACTATGTTGGAGGCTGCAGTTTTGA
1 AAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCAGTTTTAA
*
77098959 TCCTGT
66 TCCTGC
* * * ** ** * * * *
77098965 GAGCCTTAATGTGACAGTTGGGCA-TTTACAACAATTGTTACCTGTGTTAGAGGCT-CTGATTTT
1 AAGCCTTAATATGACAGCTGGG-AGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCAG-TTTT
*
77099028 GATCCTGC
64 AATCCTGC
* * * *
77099036 GAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCGCTAA-TGTGTTAGAGACTGTAATTTTAA
1 AAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCAGTTTTAA
* *
77099100 TACTAC
66 TCCTGC
* * * * ** * * *
77099106 AGGTCTTAATATGATAGTTGGGAGTTTGTAACTCTCTTTAACTATGTTAGAGGTTGCGGTTTTAA
1 AAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCAGTTTTAA
*
77099171 TACTGC
66 TCCTGC
*
77099177 AAGCCTCAATATGACA
1 AAGCCTTAATATGACA
77099193 ATTAGGAGCC
Statistics
Matches: 297, Mismatches: 68, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
70 58 0.20
71 238 0.80
72 1 0.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (71 bp):
AAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCAGTTTTAA
TCCTGC
Found at i:77098911 original size:163 final size:164
Alignment explanation
Indices: 77098609--77098917 Score: 426
Period size: 163 Copynumber: 1.9 Consensus size: 164
77098599 ATAACAACTA
* * * *
77098609 GGAGTTTGTAATTCTCGCTAACTGTGTTGGAGGTTACAGTTTTAATCCCGTGAGCCTTAACATGA
1 GGAGTTTGTAACTCTCACTAACTGTGTTGGAGGCTACAGTTTTAATCCCGTAAGCCTTAACATGA
* *
77098674 CAGTTGAGAGTTTGTAACTCTGGCTAACTGTGTTAGAGGCTGCGGTTTTGATCCTTCAAACCTTA
66 CAGTGGAGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCGGTTTTGATCCTTCAAACCTTA
77098739 ATATGACAGCT-GGAAGCCTTAATATGATAGTTG
131 ATATGACAGCTAGGAAGCCTTAATATGATAGTTG
* * * *
77098772 GGAGTTTGTAACTCTCACTAATTGTGTTGGAGGCTGCAGTTTTAATCCTGTAAGCCTTAATATGA
1 GGAGTTTGTAACTCTCACTAACTGTGTTGGAGGCTACAGTTTTAATCCCGTAAGCCTTAACATGA
* * * * * *
77098837 CAGCTGGA-AGTTTGTAACTCTCGCTAACTGTGTTGGAGGTTGTGGTTTTGATCCTGT-GAGCTT
66 CAG-TGGAGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCGGTTTTGATCCT-TCAAACCT
*
77098900 TAATGTGACAGCTAGGAA
129 TAATATGACAGCTAGGAA
77098918 TTTGCAACTT
Statistics
Matches: 126, Mismatches: 17, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
163 118 0.94
164 8 0.06
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.35
Consensus pattern (164 bp):
GGAGTTTGTAACTCTCACTAACTGTGTTGGAGGCTACAGTTTTAATCCCGTAAGCCTTAACATGA
CAGTGGAGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCGGTTTTGATCCTTCAAACCTTA
ATATGACAGCTAGGAAGCCTTAATATGATAGTTG
Found at i:77099012 original size:305 final size:304
Alignment explanation
Indices: 77098448--77099056 Score: 679
Period size: 305 Copynumber: 2.0 Consensus size: 304
77098438 TAATCCTACG
* ** * *
77098448 AGCCTTAATGTGACAGCTAGGAGTTTGCAACTCTTGCTAATTGTGTTGGAGGCTACTGTTTTGAT
1 AGCCTTAATATGACAGCTAGGAGTTTGCAACTCTCACTAATTGTGTTGGAGGCTACAGTTTTAAT
77098513 CCTACGAACCTTAATATAACAACTAGGAGCTTGCAACTCTCACTAACTATGTTAGAAGATGCGGC
66 CCTA-GAACCTTAATATAACAACTAGGAGCTTGCAACTCTCACTAACTATGTTAGAAGATGCGGC
* * * * *
77098578 TTTAATCTTGCGAGCCTTAATATAACAACTAGGAGTTTGTAATTCTCGCTAACTGTGTTGGAGGT
130 TTTAATCCTGCGAGCCTTAATATAACAACTAGGAATTTGCAATTCTCGCTAACTATGTTGGAGGC
** **
77098643 TACAGTTTTAATCCCGTGAGCCTTAACATGACAGTTGAGAGTTTGTAACTCTGGCTAACTGTGTT
195 TACAGTTTTAATCCCGTGAGCCTTAACATGACAGTTGAGAGTTTACAACAATGGCTAACTGTGTT
* *
77098708 AGAGGCTGC-GGTTTTGATCCTTCAAACCTTAATATGACAGCTGGA
260 AGAGGCT-CTGATTTTGATCCTGCAAACCTTAATATGACAGCTGGA
* * * * *
77098753 AGCCTTAATATGATAGTTGGGAGTTTGTAACTCTCACTAATTGTGTTGGAGGCTGCAGTTTTAAT
1 AGCCTTAATATGACAGCTAGGAGTTTGCAACTCTCACTAATTGTGTTGGAGGCTACAGTTTTAAT
* * * * * * * * * *
77098818 CCT-GTAAGCCTTAATATGACAGCT-GGAAGTTTGTAACTCTCGCTAACTGTGTTGGAGGTTGTG
66 CCTAG-AA-CCTTAATATAACAACTAGG-AGCTTGCAACTCTCACTAACTATGTTAGAAGATGCG
* * * * * * *
77098881 GTTTTGATCCTGTGAGCTTTAATGTGACAGCTAGGAATTTGCAACTT-TCGCTAACTATGTTGGA
128 GCTTTAATCCTGCGAGCCTTAATATAACAACTAGGAATTTGCAA-TTCTCGCTAACTATGTTGGA
* * * ** * * * *
77098945 GGCTGCAGTTTTGATCCTGTGAGCCTTAATGTGACAGTTGGGCA-TTTACAACAATTGTTACCTG
192 GGCTACAGTTTTAATCCCGTGAGCCTTAACATGACAGTTGAG-AGTTTACAACAATGGCTAACTG
* *
77099009 TGTTAGAGGCTCTGATTTTGATCCTGCGAGCCTTAATATGACAGCTGG
256 TGTTAGAGGCTCTGATTTTGATCCTGCAAACCTTAATATGACAGCTGG
77099057 GAGTTTGTAA
Statistics
Matches: 249, Mismatches: 49, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
303 1 0.00
304 5 0.02
305 240 0.96
306 3 0.01
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.34
Consensus pattern (304 bp):
AGCCTTAATATGACAGCTAGGAGTTTGCAACTCTCACTAATTGTGTTGGAGGCTACAGTTTTAAT
CCTAGAACCTTAATATAACAACTAGGAGCTTGCAACTCTCACTAACTATGTTAGAAGATGCGGCT
TTAATCCTGCGAGCCTTAATATAACAACTAGGAATTTGCAATTCTCGCTAACTATGTTGGAGGCT
ACAGTTTTAATCCCGTGAGCCTTAACATGACAGTTGAGAGTTTACAACAATGGCTAACTGTGTTA
GAGGCTCTGATTTTGATCCTGCAAACCTTAATATGACAGCTGGA
Found at i:77099070 original size:376 final size:374
Alignment explanation
Indices: 77098377--77099086 Score: 818
Period size: 376 Copynumber: 1.9 Consensus size: 374
77098367 TAATCCTGCG
*
77098377 AGCCTTAATAAGATAGTTGGGAGTTTGTAGCTCTCACTAACTGTGTTAGAGGCTTTGATTTTAAT
1 AGCCTTAATAAGATAGTTGGGAGTTTGTAACTCTCACTAACTGTGTTAGAGGC-TTGATTTTAAT
* * * *
77098442 CCTACGAGCCTTAATGTGACAGCTAGGAGTTTGCAACTCTTGCTAATTGTGTTGGAGGCTACTGT
65 CCTACAAGCCTTAATATGACAGCTAGGAGTTTGCAACTCTCGCTAACTGTGTTGGAGGCTACTGT
*
77098507 TTTGATCCTACGAACCTTAATATAACAACTAGGAGCTTGCAACTCTCACTAACTATGTTAGAAGA
130 TTTGATCCTACGAACCTTAATATAACAACTAGGAACTTGCAACTCTCACTAACTATGTTAGAAGA
* * ** ***
77098572 TGCGGCTTTAATCTTGCGAGCCTTAATATAACAACTAGGAGTTTGTAATTCTCGCTAACTGTGTT
195 TGCAGCTTTAATCCTGCGAGCCTTAATATAACAACTAGGAGTTTACAACAATCGCTAACTGTGTT
* * * * *
77098637 GGAGGTTACAGTTTTAATCCCGTGAGCCTTAACATGACAGTTGAGAGTTTGTAACTCTGGCTAAC
260 AGAGGCTACAGTTTTAATCCCGCGAGCCTTAACATGACAGCTGAGAGTTTGTAACTCTCGCTAA-
77098702 TGTGTTAGAGGCTGCGGTTTTGATCCTTCAAACCTTAATATGACAGCTGGA
324 TGTGTTAGAGGCTGCGGTTTTGATCCTTCAAACCTTAATATGACAGCTGGA
* * *
77098753 AGCCTTAATATGATAGTTGGGAGTTTGTAACTCTCACTAATTGTGTTGGAGGC-TGCAGTTTTAA
1 AGCCTTAATAAGATAGTTGGGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTTG-A-TTTTAA
** * **
77098817 TCCTGTAAGCCTTAATATGACAGCT-GGAAGTTTGTAACTCTCGCTAACTGTGTTGGAGG-TTGT
64 TCCTACAAGCCTTAATATGACAGCTAGG-AGTTTGCAACTCTCGCTAACTGTGTTGGAGGCTACT
** * * * * * * * * *
77098880 GGTTTTGATCCTGTGAGCTTTAATGTGACAGCTAGGAATTTGCAACTTTCGCTAACTATGTTGGA
128 -GTTTTGATCCTACGAACCTTAATATAACAACTAGGAACTTGCAACTCTCACTAACTATGTTAGA
* * * * * * * ** * * * *
77098945 GGCTGCAGTTTTGATCCTGTGAGCCTTAATGTGACAGTTGGGCA-TTTACAACAATTGTTACCTG
192 AGATGCAGCTTTAATCCTGCGAGCCTTAATATAACAACTAGG-AGTTTACAACAATCGCTAACTG
* * * * *
77099009 TGTTAGAGGCT-CTGATTTTGATCCTGCGAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCG
256 TGTTAGAGGCTACAG-TTTTAATCCCGCGAGCCTTAACATGACAGCTGAGAGTTTGTAACTCTCG
77099073 CTAATGTGTTAGAG
320 CTAATGTGTTAGAG
77099087 ACTGTAATTT
Statistics
Matches: 273, Mismatches: 55, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
374 2 0.01
375 17 0.06
376 253 0.93
377 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.35
Consensus pattern (374 bp):
AGCCTTAATAAGATAGTTGGGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTTGATTTTAATC
CTACAAGCCTTAATATGACAGCTAGGAGTTTGCAACTCTCGCTAACTGTGTTGGAGGCTACTGTT
TTGATCCTACGAACCTTAATATAACAACTAGGAACTTGCAACTCTCACTAACTATGTTAGAAGAT
GCAGCTTTAATCCTGCGAGCCTTAATATAACAACTAGGAGTTTACAACAATCGCTAACTGTGTTA
GAGGCTACAGTTTTAATCCCGCGAGCCTTAACATGACAGCTGAGAGTTTGTAACTCTCGCTAATG
TGTTAGAGGCTGCGGTTTTGATCCTTCAAACCTTAATATGACAGCTGGA
Found at i:77099277 original size:447 final size:445
Alignment explanation
Indices: 77098305--77099534 Score: 1327
Period size: 447 Copynumber: 2.8 Consensus size: 445
77098295 TTGATCCTAT
* *
77098305 GAGCCTTAATATGATAGTTGGGAGTTTGTAACTCTCACTAACTGTGTT-AGAGGTTGTAGTTTTA
1 GAGCCTTAATATGATAGTTGGGAGTTTGTAACTCTCACTAATTGTGTTGA-AGGATGTAGTTTTA
* * * * *
77098369 ATCCTGCGAGCCTTAATAAGATAGTTGGGAGTTTGTAGCTCTCACTAACTGTGTTAGAGGCTT-T
65 ATCCTGCGAGCCTTAATATGATAGTTGGAAGTTTGTAACTCTCGCTAACTGTGTTGGAGG-TTGT
* * * *
77098433 GATTTTAATCCTACGAGCCTTAATGTGACAGCTAGGAGTTTGCAACTCTT-GCTAATTGTGTTGG
129 GATTTTGATCCTATGAGCCTTAATGTGACAGCTAGGAGTTTGCAACT-TTCGCTAACTATGTTGG
* * * * * * *
77098497 AGGCTACTGTTTTGATCCTACGAACCTTAATATAACAACTAGGAGC--TTGCAACTCTCA-CTAA
193 AGGCTGCAGTTTTGATCCTATGAGCCTTAATGTGACAA-TTGG-GCATTTGCAACTCT-AGCTAA
* * * * * * * *
77098559 CTATGTTAGAAGATGC-GGCTTTAATCTTGCGAGCCTTAATATAACAACTAGGAGTTTGTAATTC
255 CTATGTTAGAGGCT-CTGGTTTTAATCCTGCGAGCCTTAATATGACAGCTGGGAGTTTGTAACTC
* * * *
77098623 TCGCTAACTGTGTTGGAGGTTACAGTTTTAATCCCGTGAGCCTTAACATGACAGTTGAGAGTTTG
319 TCGCTAA-TGTGTTAGAGCTTACAGTTTTAATCACGAGAGCCTTAACATGACAGTTGAGAGTTTG
* * * * * * *
77098688 TAACTCTGGCTAACTGTGTTAGAGGCTGCGGTTTTGATCCTTCAAACCTTAATATGACAGCTG
383 TAACTCTCGCTAACTATGTTAGAGGCTGCGGTTTTAATACTGCAAACCTCAATATGACAACTG
* * *
77098751 GAAGCCTTAATATGATAGTTGGGAGTTTGTAACTCTCACTAATTGTGTTGGAGGCTGCAGTTTTA
1 G-AGCCTTAATATGATAGTTGGGAGTTTGTAACTCTCACTAATTGTGTTGAAGGATGTAGTTTTA
** * *
77098816 ATCCTGTAAGCCTTAATATGACAGCTGGAAGTTTGTAACTCTCGCTAACTGTGTTGGAGGTTGTG
65 ATCCTGCGAGCCTTAATATGATAGTTGGAAGTTTGTAACTCTCGCTAACTGTGTTGGAGGTTGTG
* * * *
77098881 GTTTTGATCCTGTGAGCTTTAATGTGACAGCTAGGAATTTGCAACTTTCGCTAACTATGTTGGAG
130 ATTTTGATCCTATGAGCCTTAATGTGACAGCTAGGAGTTTGCAACTTTCGCTAACTATGTTGGAG
* * * ** * * * *
77098946 GCTGCAGTTTTGATCCTGTGAGCCTTAATGTGACAGTTGGGCATTTACAACAATTGTTACCTGTG
195 GCTGCAGTTTTGATCCTATGAGCCTTAATGTGACAATTGGGCATTTGCAACTCTAGCTAACTATG
* *
77099011 TTAGAGGCTCTGATTTTGATCCTGCGAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCGCTA
260 TTAGAGGCTCTGGTTTTAATCCTGCGAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCGCTA
* * * *
77099076 ATGTGTTAGAGACTGTA-A-TTTTAATACTAC-AG-GTCTTAATATGATAGTTGGGAGTTTGTAA
325 ATGTGTTAGAG-CT-TACAGTTTTAAT-C-ACGAGAGCCTTAACATGACAGTTGAGAGTTTGTAA
** * * *
77099137 CTCTCTTTAACTATGTTAGAGGTTGCGGTTTTAATACTGCAAGCCTCAATATGACAATTAG
386 CTCTCGCTAACTATGTTAGAGGCTGCGGTTTTAATACTGCAAACCTCAATATGACAACT-G
* * * * *
77099198 GAGCCTTAATACGAAAGCTGGGAGTTTGTAACTCTCGCTAATTGTGTTGAAGGATGTGGTTTTAA
1 GAGCCTTAATATGATAGTTGGGAGTTTGTAACTCTCACTAATTGTGTTGAAGGATGTAGTTTTAA
* * * * *
77099263 TTCTTGCGAGCCTTAATATGATAGTTGAAAGTTTGTCACTCTCGCTAATTGTGTTGGA-GTTAGC
66 -TCCTGCGAGCCTTAATATGATAGTTGGAAGTTTGTAACTCTCGCTAACTGTGTTGGAGGTT-GT
* * * *
77099327 GATTTTGATCATATGAGCCTTAATGTGACAGTTGGGAGTTTGCAACTCTCGCTAACTATGTTGGA
129 GATTTTGATCCTATGAGCCTTAATGTGACAGCTAGGAGTTTGCAACTTTCGCTAACTATGTTGGA
* * * * * * * * *
77099392 GCCTGCAATTATGGTCCTACT-AGCCTCAATGTGACAACT-GGAAGTTTGTAACTCTAGCTAATT
194 GGCTGCAGTTTTGATCCTA-TGAGCCTTAATGTGACAATTGGGCA-TTTGCAACTCTAGCTAACT
* * * *
77099455 ATGTTAGAGGCTGTGGTTTTAATCCTACGAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTTG
257 ATGTTAGAGGCTCTGGTTTTAATCCTGCGAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCG
*
77099520 CTGACTGTGTTAGAG
322 CT-AATGTGTTAGAG
77099535 GCTGCGGTAC
Statistics
Matches: 649, Mismatches: 117, Indels: 34
0.81 0.15 0.04
Matches are distributed among these distances:
445 2 0.00
446 159 0.24
447 473 0.73
448 15 0.02
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (445 bp):
GAGCCTTAATATGATAGTTGGGAGTTTGTAACTCTCACTAATTGTGTTGAAGGATGTAGTTTTAA
TCCTGCGAGCCTTAATATGATAGTTGGAAGTTTGTAACTCTCGCTAACTGTGTTGGAGGTTGTGA
TTTTGATCCTATGAGCCTTAATGTGACAGCTAGGAGTTTGCAACTTTCGCTAACTATGTTGGAGG
CTGCAGTTTTGATCCTATGAGCCTTAATGTGACAATTGGGCATTTGCAACTCTAGCTAACTATGT
TAGAGGCTCTGGTTTTAATCCTGCGAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCGCTAA
TGTGTTAGAGCTTACAGTTTTAATCACGAGAGCCTTAACATGACAGTTGAGAGTTTGTAACTCTC
GCTAACTATGTTAGAGGCTGCGGTTTTAATACTGCAAACCTCAATATGACAACTG
Found at i:77099531 original size:71 final size:71
Alignment explanation
Indices: 77099198--77099540 Score: 285
Period size: 71 Copynumber: 4.8 Consensus size: 71
77099188 TGACAATTAG
* * * * * *
77099198 GAGCCTTAATACGAAAGCTGGGAGTTTGTAACTCTCGCTAATTGTGTT-GAAGGATGTGGTTTTA
1 GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAATTGTGTTAG-AGGCTGCGATTTTA
* *
77099262 ATTCTTGC
65 A-TCCTAC
* ** * * * *
77099270 GAGCCTTAATATGATAGTTGAAAGTTTGTCACTCTCGCTAATTGTGTTGGA-GTTAGCGATTTTG
1 GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAATTGTGTTAGAGGCT-GCGATTTTA
* *
77099334 ATCATAT
65 ATCCTAC
* * * * * * * * **
77099341 GAGCCTTAATGTGACAGTTGGGAGTTTGCAACTCTCGCTAACTATGTTGGAGCCTGCAATTATGG
1 GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAATTGTGTTAGAGGCTGCGATTTTAA
77099406 TCCTAC
66 TCCTAC
* * * ** * * * * *
77099412 TAGCCTCAATGTGACAACTGGAAGTTTGTAACTCTAGCTAATTATGTTAGAGGCTGTGGTTTTAA
1 GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAATTGTGTTAGAGGCTGCGATTTTAA
77099477 TCCTAC
66 TCCTAC
* * *
77099483 GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTTGCTGACTGTGTTAGAGGCTGCG
1 GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAATTGTGTTAGAGGCTGCG
77099541 GTACTGAACC
Statistics
Matches: 213, Mismatches: 55, Indels: 7
0.77 0.20 0.03
Matches are distributed among these distances:
71 161 0.76
72 51 0.24
73 1 0.00
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (71 bp):
GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAATTGTGTTAGAGGCTGCGATTTTAA
TCCTAC
Found at i:77101455 original size:15 final size:16
Alignment explanation
Indices: 77101435--77101473 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
77101425 AAAAAATTGA
77101435 AAAAAAATTC-AAGGT
1 AAAAAAATTCGAAGGT
*
77101450 AAAAAAATTCGAAGTT
1 AAAAAAATTCGAAGGT
77101466 AAAAAAAT
1 AAAAAAAT
77101474 AATTTAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.64, C:0.05, G:0.10, T:0.21
Consensus pattern (16 bp):
AAAAAAATTCGAAGGT
Found at i:77101455 original size:16 final size:17
Alignment explanation
Indices: 77101434--77101472 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
77101424 TAAAAAATTG
77101434 AAAAAAAATTC-AAGGT
1 AAAAAAAATTCGAAGGT
*
77101450 -AAAAAAATTCGAAGTT
1 AAAAAAAATTCGAAGGT
77101466 AAAAAAA
1 AAAAAAA
77101473 TAATTTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 10 0.50
16 4 0.20
17 6 0.30
ACGTcount: A:0.67, C:0.05, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAAAAAATTCGAAGGT
Found at i:77102382 original size:21 final size:21
Alignment explanation
Indices: 77102358--77102402 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
77102348 TGTTGATGAG
*
77102358 AGAGAATGAAAGAAAAATAAA
1 AGAGAATGAAAGAAAAAGAAA
** *
77102379 AGAGTTTGAGAGAAAAAGAAA
1 AGAGAATGAAAGAAAAAGAAA
77102400 AGA
1 AGA
77102403 AATTGAAGAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.11
Consensus pattern (21 bp):
AGAGAATGAAAGAAAAAGAAA
Found at i:77102408 original size:21 final size:20
Alignment explanation
Indices: 77102367--77102412 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
77102357 GAGAGAATGA
* **
77102367 AAGAAAAATAAAAGAGTTTG
1 AAGAAAAAGAAAAGAAATTG
77102387 AGAGAAAAAGAAAAGAAATTG
1 A-AGAAAAAGAAAAGAAATTG
77102408 AAGAA
1 AAGAA
77102413 GAGAAAATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.65, C:0.00, G:0.22, T:0.13
Consensus pattern (20 bp):
AAGAAAAAGAAAAGAAATTG
Found at i:77103040 original size:13 final size:13
Alignment explanation
Indices: 77103022--77103046 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77103012 GTAAGTGATT
77103022 TTGATGATTTTTC
1 TTGATGATTTTTC
77103035 TTGATGATTTTT
1 TTGATGATTTTT
77103047 GCACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:77103814 original size:47 final size:44
Alignment explanation
Indices: 77103751--77104110 Score: 179
Period size: 46 Copynumber: 7.6 Consensus size: 44
77103741 TATGTGTGCT
* *
77103751 AGTGTAAGACATGTCTGGGACATGCATTGGACACATT-ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG---CATTGATGAGAGAC
* *
77103797 AGTGCAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGAT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATT--GATGAGAGAC
* * * *
77103845 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCG-TGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGATGA-G--AGAC
* ** * *
77103891 AGTGTAAGACATGTCTAGGACATGCATCGGC-TAAATGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGATGA-GAGAC
* * * * *
77103935 AGTGTAAGACCATGTCTAGGACATGGCATTGACATGGATATGTGAGAGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTG--ATGAGAGA-C
* * * * * *
77103984 TAATGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCGATAGTC
1 -AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGA--T-GAGAGAC
* * *
77104034 AGTGTAAGACCATGTCTGGGACATGGCATTGAC-TTGATGGATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAT-GA-GAGAC
* *
77104081 AATTTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
77104111 AACATTACAC
Statistics
Matches: 249, Mismatches: 45, Indels: 39
0.75 0.14 0.12
Matches are distributed among these distances:
43 3 0.01
44 13 0.05
45 19 0.08
46 60 0.24
47 59 0.24
48 27 0.11
49 33 0.13
50 32 0.13
51 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATTGATGAGAGAC
Found at i:77103898 original size:46 final size:46
Alignment explanation
Indices: 77103751--77104110 Score: 189
Period size: 47 Copynumber: 7.6 Consensus size: 46
77103741 TATGTGTGCT
* * * * *
77103751 AGTGTAAGACATGTCTGGGACATGCATTGGACACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGATGAGAGCC
* * * * **
77103797 AGTGCAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGAT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGTGATGAGAGCC
* *
77103845 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGTGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGATG-AGAGCC
* ** * *
77103891 AGTGTAAGACATGTCTAGGACATGCATCGG-CT--AAATGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGATGA-GAGCC
* * * * * *
77103935 AGTGTAAGACCATGTCTAGGACATGGCATTGACATGGAT-ATGTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCG-TGA--TGAGAGCC
* * * * *
77103985 AATGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGAT-TTCGATAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCG-TGAT-GAGAGCC
* *
77104034 AGTGTAAGACCATGTCTGGGACATGGCAT-TGACT--TGATGGATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGTGAT-GA-GAGCC
* *
77104081 AATTTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
77104111 AACATTACAC
Statistics
Matches: 243, Mismatches: 54, Indels: 32
0.74 0.16 0.10
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 11 0.05
45 17 0.07
46 58 0.24
47 60 0.25
48 25 0.10
49 32 0.13
50 34 0.14
51 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGATGAGAGCC
Found at i:77104044 original size:99 final size:96
Alignment explanation
Indices: 77103932--77104107 Score: 273
Period size: 99 Copynumber: 1.8 Consensus size: 96
77103922 TAAATGATGT
*
77103932 GTCAGTGTAAGACCATGTCTAGGACATGGCATTGACATGGATATGTGA-GAGCTAATGTAAGACC
1 GTCAGTGTAAGACCATGTCTAGGACATGGCATTGAC-TGG--ATG-GATGAGCCAATGTAAGACC
77103996 ATGTCTGGGACATGGCGTCGGCCTCGATTTCGATA
62 ATGTCTGGGACATGGCGTCGGCCTCGATTTCGATA
* * *
77104031 GTCAGTGTAAGACCATGTCTGGGACATGGCATTGACTTGATGGATGAGCCAATTTAAGACCATGT
1 GTCAGTGTAAGACCATGTCTAGGACATGGCATTGACTGGATGGATGAGCCAATGTAAGACCATGT
77104096 CTGGGACATGGC
66 CTGGGACATGGC
77104108 ATCAACATTA
Statistics
Matches: 72, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
95 2 0.03
96 33 0.46
98 2 0.03
99 35 0.49
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (96 bp):
GTCAGTGTAAGACCATGTCTAGGACATGGCATTGACTGGATGGATGAGCCAATGTAAGACCATGT
CTGGGACATGGCGTCGGCCTCGATTTCGATA
Found at i:77107075 original size:5 final size:5
Alignment explanation
Indices: 77107065--77107091 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
77107055 AATTTTTGTG
77107065 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
77107092 TCACAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:77108929 original size:50 final size:50
Alignment explanation
Indices: 77108808--77108991 Score: 217
Period size: 50 Copynumber: 3.7 Consensus size: 50
77108798 ACCTATTGTG
* * * * *
77108808 AGGTCACATGTGTAGTACTATGTGCAGACTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
77108859 TGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
77108909 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
77108959 -GGTCGCATGTGTAGTACTATGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
77108992 TGCATACCAG
Statistics
Matches: 113, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
49 30 0.27
50 46 0.41
51 37 0.33
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:77114522 original size:5 final size:5
Alignment explanation
Indices: 77114512--77114538 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
77114502 AATTTTTGTG
77114512 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
77114539 TCACAGTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:77115195 original size:75 final size:75
Alignment explanation
Indices: 77115090--77115230 Score: 203
Period size: 75 Copynumber: 1.9 Consensus size: 75
77115080 TTTTGTGGGA
* * *
77115090 TAAATGCATCTTTGATTAATGTCTTGCATTAATACATTTGCAT-CTTTAGAAACTTGCATTAAGT
1 TAAATGCATCATTGATTAATGTCTTGCATTAATACACTAGCATCCTTTA-AAACTTGCATTAAGT
77115154 GTCTTGTTTAT
65 GTCTTGTTTAT
* * * *
77115165 TAAATGCATCATTGTTTAATGTTTTGCATTAATACACTAGCATCCTTTAATACTTGCATTATGTG
1 TAAATGCATCATTGATTAATGTCTTGCATTAATACACTAGCATCCTTTAAAACTTGCATTAAGTG
77115230 T
66 T
77115231 TCTTCATATT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
75 53 0.91
76 5 0.09
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.45
Consensus pattern (75 bp):
TAAATGCATCATTGATTAATGTCTTGCATTAATACACTAGCATCCTTTAAAACTTGCATTAAGTG
TCTTGTTTAT
Found at i:77120879 original size:40 final size:40
Alignment explanation
Indices: 77120839--77120913 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
77120829 ATTTGTTTGA
* *
77120839 AAATCATTTTGA--TGTGTTAAAATGATTTTAACTTGGTTG
1 AAATCATTTTGACTTG-GTTAAAATCAATTTAACTTGGTTG
*
77120878 AAGTCATTTTGACTTGGTTAAAATCAATTTAACTTG
1 AAATCATTTTGACTTGGTTAAAATCAATTTAACTTG
77120914 ATTTTAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 11 0.35
40 18 0.58
41 2 0.06
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (40 bp):
AAATCATTTTGACTTGGTTAAAATCAATTTAACTTGGTTG
Found at i:77120912 original size:20 final size:20
Alignment explanation
Indices: 77120854--77120913 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
77120844 ATTTTGATGT
*
77120854 GTTAAAATGATTTTAACTTG
1 GTTAAAATCATTTTAACTTG
* * *
77120874 GTTGAAGTCATTTTGACTTG
1 GTTAAAATCATTTTAACTTG
*
77120894 GTTAAAATCAATTTAACTTG
1 GTTAAAATCATTTTAACTTG
77120914 ATTTTAAAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (20 bp):
GTTAAAATCATTTTAACTTG
Found at i:77121003 original size:28 final size:28
Alignment explanation
Indices: 77120972--77121028 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
77120962 AAATTTTATC
*
77120972 TCTTATACTTCAAATTTAAAAATCATTT
1 TCTTATACTTCAAATTTAAAAACCATTT
77121000 TCTTATACTTCAAATTTAAAAACCATTT
1 TCTTATACTTCAAATTTAAAAACCATTT
77121028 T
1 T
77121029 GTCAATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.16, G:0.00, T:0.46
Consensus pattern (28 bp):
TCTTATACTTCAAATTTAAAAACCATTT
Found at i:77121319 original size:10 final size:10
Alignment explanation
Indices: 77121304--77121333 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
77121294 ATAATCAATC
77121304 AATTTACCTT
1 AATTTACCTT
77121314 AATTTACCTT
1 AATTTACCTT
77121324 AATTTACCTT
1 AATTTACCTT
77121334 TTCTTCTCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.50
Consensus pattern (10 bp):
AATTTACCTT
Found at i:77122608 original size:33 final size:33
Alignment explanation
Indices: 77122571--77122639 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
77122561 TAAATCAAGG
77122571 AAGAGATAATGGAGGATTTTTAGGGAGAGATTT
1 AAGAGATAATGGAGGATTTTTAGGGAGAGATTT
*
77122604 AAGAGATAATGGAGGATTTTTATGGAGAGATTT
1 AAGAGATAATGGAGGATTTTTAGGGAGAGATTT
77122637 AAG
1 AAG
77122640 GGAGGAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.38, C:0.00, G:0.32, T:0.30
Consensus pattern (33 bp):
AAGAGATAATGGAGGATTTTTAGGGAGAGATTT
Found at i:77126199 original size:20 final size:20
Alignment explanation
Indices: 77126174--77126228 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
77126164 AACCCTAGTG
* *
77126174 GTATCGATATTTTTCCACAA
1 GTATCGATATTTTTACAAAA
*
77126194 GTATCGATATTTTTATAAAA
1 GTATCGATATTTTTACAAAA
*
77126214 GTATCAATATTTTTA
1 GTATCGATATTTTTA
77126229 AATTGGTATC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.35, C:0.11, G:0.09, T:0.45
Consensus pattern (20 bp):
GTATCGATATTTTTACAAAA
Found at i:77140008 original size:30 final size:30
Alignment explanation
Indices: 77139974--77140039 Score: 123
Period size: 30 Copynumber: 2.2 Consensus size: 30
77139964 GGGCTGACCG
77139974 TGTGTCACACACGGCCTAGACACATGCCCA
1 TGTGTCACACACGGCCTAGACACATGCCCA
*
77140004 TGTGTCACACACGGCCTAGACACATGCCCG
1 TGTGTCACACACGGCCTAGACACATGCCCA
77140034 TGTGTC
1 TGTGTC
77140040 TACCCGTGTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.23, C:0.35, G:0.23, T:0.20
Consensus pattern (30 bp):
TGTGTCACACACGGCCTAGACACATGCCCA
Found at i:77141333 original size:94 final size:95
Alignment explanation
Indices: 77141161--77141431 Score: 269
Period size: 94 Copynumber: 2.8 Consensus size: 95
77141151 GGGGTTATGT
* * * * * * *
77141161 GAGAGCTAGTATAAGACCATGTCTAGGACATGGCATC-AGCATTGAGACGAGGGCTAGTGTAAGA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATAGAG-GGAGTGCCAGTGTAAGA
* * *** *
77141225 CGTGTCTGGTACATGCATCA-TTTGCAT-CAT
64 CATGTCTGGGACATGCATCAGCACGCATACAA
* * *
77141255 GATAGCCCGTGTAAGACCACGTCTGGGACATGGCATCGACATAGAGGTGAGTGCCAGTGTAAGAC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGG-GAGTGCCAGTGTAAGAC
77141320 ATGTCTGGGACATGCATCAGCACGCATACAA
65 ATGTCTGGGACATGCATCAGCACGCATACAA
* * * * * *
77141351 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGGAGATAGCCAGCGTAAGA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGGGAG-T-GCCAGTGTAAGA
77141416 CCATGTCTGGGACATG
64 -CATGTCTGGGACATG
77141432 GCAGCGGCAA
Statistics
Matches: 145, Mismatches: 25, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
94 69 0.48
95 8 0.06
96 42 0.29
97 11 0.08
98 15 0.10
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (95 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGGGAGTGCCAGTGTAAGACA
TGTCTGGGACATGCATCAGCACGCATACAA
Found at i:77141379 original size:49 final size:50
Alignment explanation
Indices: 77141161--77141434 Score: 173
Period size: 49 Copynumber: 5.7 Consensus size: 50
77141151 GGGGTTATGT
* * * * *
77141161 GAGAGCTAGTATAAGACCATGTCTAGGACATGGCATCAGCATTG-AGAC--
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCA-CGCATACAA
* * * * *** *
77141209 GAGGGCTAGTGTAAGA-CGTGTCTGGTACAT-GCATCA-TTTGCAT-CAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGCATACAA
* * * * *
77141255 GATAGCCCGTGTAAGACCACGTCTGGGACATGGCATC-G-A--CATAGAGGT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGCATACA--A
*
77141303 GAGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCACGCATACAA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGCATACAA
* * * **
77141351 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAT-GGA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGC-ATACAA
* *
77141400 GATAGCCAGCGTAAGACCATGTCTGGGACATGGCA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCA
77141435 GCGGCAACTT
Statistics
Matches: 178, Mismatches: 32, Indels: 31
0.74 0.13 0.13
Matches are distributed among these distances:
44 3 0.02
45 4 0.02
46 24 0.13
47 36 0.20
48 48 0.27
49 49 0.28
50 14 0.08
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (50 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGCATACAA
Found at i:77142539 original size:46 final size:46
Alignment explanation
Indices: 77142471--77142607 Score: 229
Period size: 46 Copynumber: 3.0 Consensus size: 46
77142461 TATATATACA
* * * *
77142471 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
77142517 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
77142563 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
77142608 ATACACTTCC
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 85 1.00
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:77142650 original size:22 final size:22
Alignment explanation
Indices: 77142624--77142699 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
77142614 TTCCACGTTC
77142624 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
77142646 ATCACATATATG-CATGT-T-CACATT
1 ATCACAT-T-GGCCAT-TCTGC-C-TT
*
77142670 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
77142693 ATCACAT
1 ATCACAT
77142700 ATATGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:77142652 original size:47 final size:47
Alignment explanation
Indices: 77142581--77142959 Score: 598
Period size: 47 Copynumber: 8.1 Consensus size: 47
77142571 ACACATTTCG
* * * * * *
77142581 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
77142628 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
77142675 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
77142722 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
77142769 CATTGGCCATTCGGCCTTATCTCACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
77142816 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
77142863 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
77142910 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
77142957 CAT
1 CAT
77142960 AAAATCCTAA
Statistics
Matches: 314, Mismatches: 17, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 313 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:77149288 original size:27 final size:27
Alignment explanation
Indices: 77149248--77149299 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
77149238 CCATGAAGTC
77149248 TAACAACCTCTGAAATGTACAAATCAG
1 TAACAACCTCTGAAATGTACAAATCAG
*
77149275 TAACAACCTTTGAAATGTACAAATC
1 TAACAACCTCTGAAATGTACAAATC
77149300 GGCTAACTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.44, C:0.21, G:0.10, T:0.25
Consensus pattern (27 bp):
TAACAACCTCTGAAATGTACAAATCAG
Found at i:77155835 original size:22 final size:22
Alignment explanation
Indices: 77155810--77155854 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
77155800 GACACAAAGA
77155810 TTTAGAGTGTTCGACCCTAATT
1 TTTAGAGTGTTCGACCCTAATT
77155832 TTTAGAGTGTTCGACCCTAATT
1 TTTAGAGTGTTCGACCCTAATT
77155854 T
1 T
77155855 CCTACTCCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (22 bp):
TTTAGAGTGTTCGACCCTAATT
Found at i:77156328 original size:153 final size:153
Alignment explanation
Indices: 77156050--77156357 Score: 580
Period size: 153 Copynumber: 2.0 Consensus size: 153
77156040 TTTGCAAAAT
*
77156050 GAAGCTCAATTACAATAAAATACACTTGAGCAAAAGAATAAAAATAAAGATCACAAGTGTATATA
1 GAAGCTCAATTACAATAAAATACACTTGAGAAAAAGAATAAAAATAAAGATCACAAGTGTATATA
77156115 AGAAGAATATGAATGTATTAAGCTCTAAGGTTGCTTGATTGATAATTTTTGCTTGAAAGTGCTTT
66 AGAAGAATATGAATGTATTAAGCTCTAAGGTTGCTTGATTGATAATTTTTGCTTGAAAGTGCTTT
77156180 CTTATCACTATAGATCTTTGGAG
131 CTTATCACTATAGATCTTTGGAG
77156203 GAAGCTCAATTACAATAAAATACACTTGAGAAAAAGAATAAAAATAAAGATCACAAGTGTATATA
1 GAAGCTCAATTACAATAAAATACACTTGAGAAAAAGAATAAAAATAAAGATCACAAGTGTATATA
77156268 AGAAGAATATGAATGTATTAAGCTCTAAGGTTGCTTGATTGATAATTTTTGCTTGAAAGTGCTTT
66 AGAAGAATATGAATGTATTAAGCTCTAAGGTTGCTTGATTGATAATTTTTGCTTGAAAGTGCTTT
* * *
77156333 CTTATCGCTGTAGGTCTTTGGAG
131 CTTATCACTATAGATCTTTGGAG
77156356 GA
1 GA
77156358 TGGTATTTAT
Statistics
Matches: 151, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
153 151 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (153 bp):
GAAGCTCAATTACAATAAAATACACTTGAGAAAAAGAATAAAAATAAAGATCACAAGTGTATATA
AGAAGAATATGAATGTATTAAGCTCTAAGGTTGCTTGATTGATAATTTTTGCTTGAAAGTGCTTT
CTTATCACTATAGATCTTTGGAG
Found at i:77158108 original size:93 final size:93
Alignment explanation
Indices: 77158001--77158172 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
77157991 GCCCATAAGT
* * * *
77158001 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACCCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
77158066 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
* * *
77158094 GAACTCAGACTCAACCCAACGAGTTCAGACATTCGCATTCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACCCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
77158159 CGAGTTCAGATGCC
66 CGAGCTCAGATGCC
77158173 CAAATATCCC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACCCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:77158163 original size:46 final size:46
Alignment explanation
Indices: 77157994--77158168 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
77157984 GTAGCCTGCC
* * * *
77157994 CATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATC
1 CATAAGTGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATT
* *
77158040 CATAAGTGAACTCAGACTCAACTCAACGAGCTC-G-GATGC-CTAGTT
1 CATAAGTGAACTCAGACTCAACTCAACGAGCTCAGACATTCGC-A-TT
*** * *
77158085 ACATCTCTCGAACTCAGACTCAACCCAACGAGTTCAGACATTCGCATT
1 -CATAAGT-GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATT
* *
77158133 CATAAGTGAACTCGGACTCAACTCAACGAGTTCAGA
1 CATAAGTGAACTCAGACTCAACTCAACGAGCTCAGA
77158169 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 64 0.60
47 28 0.26
48 3 0.03
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.21
Consensus pattern (46 bp):
CATAAGTGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATT
Found at i:77159595 original size:19 final size:20
Alignment explanation
Indices: 77159552--77159636 Score: 100
Period size: 20 Copynumber: 4.2 Consensus size: 20
77159542 GCCTAGAGCA
* *
77159552 ATTTTGACTTGTTTGAAAATC
1 ATTTTGATTTGGTT-AAAATC
* *
77159573 ATTTTGATAT-GTTAAAATG
1 ATTTTGATTTGGTTAAAATC
* *
77159592 ATTTTAATTTGGTTGAAATC
1 ATTTTGATTTGGTTAAAATC
77159612 ATTTTGATTTGGTTAAAATC
1 ATTTTGATTTGGTTAAAATC
77159632 ATTTT
1 ATTTT
77159637 AACTTGATTT
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
19 13 0.25
20 32 0.60
21 8 0.15
ACGTcount: A:0.31, C:0.05, G:0.14, T:0.51
Consensus pattern (20 bp):
ATTTTGATTTGGTTAAAATC
Found at i:77159596 original size:40 final size:41
Alignment explanation
Indices: 77159552--77159657 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 41
77159542 GCCTAGAGCA
* *
77159552 ATTTTGACTTGTTTGAAAATCATTTTGATAT-GTTAAAATG
1 ATTTTAACTTGTTTGAAAATCATTTTGATATGGTTAAAATC
* * *
77159592 ATTTTAATTTGGTTG-AAATCATTTTGATTTGGTTAAAATC
1 ATTTTAACTTGTTTGAAAATCATTTTGATATGGTTAAAATC
* *
77159632 ATTTTAACTTGATTTTAAAATTATTT
1 ATTTTAACTTG-TTTGAAAATCATTT
77159658 GAAAATTTTC
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
39 14 0.26
40 30 0.56
41 2 0.04
42 8 0.15
ACGTcount: A:0.32, C:0.05, G:0.12, T:0.51
Consensus pattern (41 bp):
ATTTTAACTTGTTTGAAAATCATTTTGATATGGTTAAAATC
Found at i:77164048 original size:80 final size:80
Alignment explanation
Indices: 77163964--77164112 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
77163954 TATGGTAACC
* * * *
77163964 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
77164028 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
77164044 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
77164109 CCGG
66 CCGG
77164113 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:77164054 original size:40 final size:38
Alignment explanation
Indices: 77164005--77164112 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
77163995 ATCACGATTT
*
77164005 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
77164045 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
77164085 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
77164113 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:77172118 original size:80 final size:80
Alignment explanation
Indices: 77172034--77172182 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
77172024 TATGGTAACC
* * * *
77172034 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
77172098 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
77172114 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
77172179 CCGG
66 CCGG
77172183 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:77172124 original size:40 final size:38
Alignment explanation
Indices: 77172075--77172182 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
77172065 ATCACGATTT
*
77172075 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
77172115 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
77172155 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
77172183 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:77173943 original size:39 final size:40
Alignment explanation
Indices: 77173848--77174100 Score: 369
Period size: 39 Copynumber: 6.5 Consensus size: 40
77173838 CGGATGGTAA
* *
77173848 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
77173888 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
77173928 -CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
77173967 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
77174006 -C-GGCTAAGT-CCGAAGGTATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
77174043 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
77174083 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
77174101 TACTTGGTTT
Statistics
Matches: 200, Mismatches: 7, Indels: 13
0.91 0.03 0.06
Matches are distributed among these distances:
37 35 0.17
38 2 0.01
39 91 0.46
40 71 0.35
41 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:77182008 original size:40 final size:40
Alignment explanation
Indices: 77181953--77182210 Score: 398
Period size: 40 Copynumber: 6.5 Consensus size: 40
77181943 CGGATGGTAA
* * *
77181953 CCGGGCTAAGTCCCGAAGGCATATGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
77181993 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
77182033 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
77182073 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
77182113 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
77182153 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
77182193 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
77182211 TACTTGGTTT
Statistics
Matches: 211, Mismatches: 5, Indels: 5
0.95 0.02 0.02
Matches are distributed among these distances:
39 17 0.08
40 193 0.91
41 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:77187157 original size:35 final size:35
Alignment explanation
Indices: 77187111--77187180 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
77187101 CCTTTCAATA
77187111 CTAAAGAAATGGAGAGGATGGGTAAGCTTTACGCT
1 CTAAAGAAATGGAGAGGATGGGTAAGCTTTACGCT
77187146 CTAAAGAAATGGAGAGGATGGGTAAGCTTTACGCT
1 CTAAAGAAATGGAGAGGATGGGTAAGCTTTACGCT
77187181 TAGTAAGTCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.34, C:0.11, G:0.31, T:0.23
Consensus pattern (35 bp):
CTAAAGAAATGGAGAGGATGGGTAAGCTTTACGCT
Found at i:77188168 original size:51 final size:49
Alignment explanation
Indices: 77188044--77188238 Score: 248
Period size: 49 Copynumber: 3.9 Consensus size: 49
77188034 TAGACAAGGC
* * **
77188044 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
77188093 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * * *
77188144 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
77188193 TATCCT-GTACACGTAGTAGCCTACACTTAGTACTACACACGTGACC
1 TAT-CTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
77188239 TCACAATAGA
Statistics
Matches: 125, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
49 78 0.62
50 7 0.06
51 40 0.32
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:77188184 original size:100 final size:100
Alignment explanation
Indices: 77188044--77188236 Score: 343
Period size: 100 Copynumber: 1.9 Consensus size: 100
77188034 TAGACAAGGC
*
77188044 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTAT-CTGGTACACGTA
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCT-GTACACGTA
*
77188108 GTAGCCTGCACTTAGTACTACACACGTGATCAAAGT
65 GTAGCCTACACTTAGTACTACACACGTGATCAAAGT
*
77188144 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCTGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCTGTACACGTAG
77188209 TAGCCTACACTTAGTACTACACACGTGA
66 TAGCCTACACTTAGTACTACACACGTGA
77188237 CCTCACAATA
Statistics
Matches: 89, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
100 87 0.98
101 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (100 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCTGTACACGTAG
TAGCCTACACTTAGTACTACACACGTGATCAAAGT
Found at i:77191494 original size:37 final size:37
Alignment explanation
Indices: 77191444--77191526 Score: 139
Period size: 37 Copynumber: 2.2 Consensus size: 37
77191434 TACATGTAAG
* * *
77191444 GTTACCCATCCGGGCTGAACCTATAAAATGACACCAA
1 GTTACTCATCCGGGCTAAACCTATAAAACGACACCAA
77191481 GTTACTCATCCGGGCTAAACCTATAAAACGACACCAA
1 GTTACTCATCCGGGCTAAACCTATAAAACGACACCAA
77191518 GTTACTCAT
1 GTTACTCAT
77191527 TTGGACTAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.35, C:0.29, G:0.14, T:0.22
Consensus pattern (37 bp):
GTTACTCATCCGGGCTAAACCTATAAAACGACACCAA
Found at i:77191536 original size:37 final size:37
Alignment explanation
Indices: 77191444--77191539 Score: 129
Period size: 37 Copynumber: 2.6 Consensus size: 37
77191434 TACATGTAAG
* * * *
77191444 GTTACCCATCCGGGCTGAACCTATAAAATGACACCAA
1 GTTACTCATCCGGACTAAACCTATAAAACGACACCAA
*
77191481 GTTACTCATCCGGGCTAAACCTATAAAACGACACCAA
1 GTTACTCATCCGGACTAAACCTATAAAACGACACCAA
**
77191518 GTTACTCATTTGGACTAAACCT
1 GTTACTCATCCGGACTAAACCT
77191540 GTTTCACATG
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (37 bp):
GTTACTCATCCGGACTAAACCTATAAAACGACACCAA
Found at i:77198497 original size:22 final size:22
Alignment explanation
Indices: 77198463--77198515 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
77198453 CCATATTTAT
*
77198463 TTTTATTGCAATT-TAATTTTGG
1 TTTTATTTCAATTATAATTTT-G
* *
77198485 TTTTATTTTAATTACTAATTTTT
1 TTTTATTTCAATTA-TAATTTTG
77198508 TTTTATTT
1 TTTTATTT
77198516 ACTTCTGGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 11 0.42
23 8 0.31
24 7 0.27
ACGTcount: A:0.23, C:0.04, G:0.06, T:0.68
Consensus pattern (22 bp):
TTTTATTTCAATTATAATTTTG
Found at i:77204811 original size:17 final size:17
Alignment explanation
Indices: 77204789--77204822 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
77204779 GCCCCACTCT
77204789 CCTTTCCTTGCTTCCCC
1 CCTTTCCTTGCTTCCCC
* *
77204806 CCTTTCTTTTCTTCCCC
1 CCTTTCCTTGCTTCCCC
77204823 TTTCTCCATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.50, G:0.03, T:0.47
Consensus pattern (17 bp):
CCTTTCCTTGCTTCCCC
Found at i:77224197 original size:28 final size:28
Alignment explanation
Indices: 77224157--77224282 Score: 143
Period size: 28 Copynumber: 4.6 Consensus size: 28
77224147 AAAAATTTTC
*
77224157 TCGCACACTTAGTGCTCAATAACCGATT
1 TCGCACACTTAGTGCTCAATAACCAATT
* *
77224185 TCGCACACTTAGTGCTCAAAAATACAATT
1 TCGCACACTTAGTGCTCAATAA-CCAATT
* *
77224214 T-GCACACTTAGTGCTTAA-AACCAACT
1 TCGCACACTTAGTGCTCAATAACCAATT
* * *
77224240 T-GCACACTT-GTTCTCAATGACCGATT
1 TCGCACACTTAGTGCTCAATAACCAATT
77224266 TCGCACACTTAGTGCTC
1 TCGCACACTTAGTGCTC
77224283 GGTATCAAAT
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
25 6 0.07
26 19 0.23
27 10 0.12
28 42 0.51
29 5 0.06
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.29
Consensus pattern (28 bp):
TCGCACACTTAGTGCTCAATAACCAATT
Found at i:77224276 original size:53 final size:57
Alignment explanation
Indices: 77224157--77224282 Score: 145
Period size: 53 Copynumber: 2.3 Consensus size: 57
77224147 AAAAATTTTC
* *
77224157 TCGCACACTTAGTGCTCAATAACCGATTTCGCACACTTAGTGCTCAAAAATACAATT
1 TCGCACACTTAGTGCTCAATAACCAACTTCGCACACTTAGTGCTCAAAAATACAATT
* * ** * *
77224214 T-GCACACTTAGTGCTTAA-AACCAACTT-GCACACTT-GTTCTCAATGA-CCGATT
1 TCGCACACTTAGTGCTCAATAACCAACTTCGCACACTTAGTGCTCAAAAATACAATT
77224266 TCGCACACTTAGTGCTC
1 TCGCACACTTAGTGCTC
77224283 GGTATCAAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
52 5 0.08
53 22 0.37
54 8 0.14
55 7 0.12
56 16 0.27
57 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.29
Consensus pattern (57 bp):
TCGCACACTTAGTGCTCAATAACCAACTTCGCACACTTAGTGCTCAAAAATACAATT
Found at i:77225603 original size:15 final size:15
Alignment explanation
Indices: 77225583--77225612 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
77225573 CACCCCGGAG
77225583 TTTGAGATTAGAAGT
1 TTTGAGATTAGAAGT
*
77225598 TTTGAGATTTGAAGT
1 TTTGAGATTAGAAGT
77225613 GAAGGTCAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.43
Consensus pattern (15 bp):
TTTGAGATTAGAAGT
Found at i:77225809 original size:19 final size:18
Alignment explanation
Indices: 77225772--77225810 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
77225762 TTTGGATTTG
*
77225772 TTTTTTTTTTACTTTATT
1 TTTTTTTTTTACTTCATT
*
77225790 TTTTTATTTTTAGTTCATT
1 TTTTT-TTTTTACTTCATT
77225809 TT
1 TT
77225811 GAGAGAGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.13, C:0.05, G:0.03, T:0.79
Consensus pattern (18 bp):
TTTTTTTTTTACTTCATT
Found at i:77246313 original size:29 final size:28
Alignment explanation
Indices: 77246249--77246350 Score: 105
Period size: 29 Copynumber: 3.6 Consensus size: 28
77246239 GTGACGAGAT
* *
77246249 TGGCACTGAGTGTGCGAGCTTAAATGTA
1 TGGCACTAAGTGTGCGAGCTTAAATATA
* * *
77246277 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
* * * *
77246306 TGGCACTATGTGTGGGGGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
77246335 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
77246351 TAATCGAGTA
Statistics
Matches: 58, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
28 21 0.36
29 37 0.64
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:77251801 original size:16 final size:16
Alignment explanation
Indices: 77251756--77251803 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
77251746 AAATTTATTG
* **
77251756 ATATATAATATTAATG
1 ATATTTAATATTAAAA
*
77251772 ATATTTAATTTTAAAA
1 ATATTTAATATTAAAA
*
77251788 ATATTTAGTATTAAAA
1 ATATTTAATATTAAAA
77251804 TAATACAACA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (16 bp):
ATATTTAATATTAAAA
Found at i:77252637 original size:16 final size:16
Alignment explanation
Indices: 77252613--77252647 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
77252603 ACCAACTCAT
*
77252613 TAATATATATTATTTA
1 TAATATATATTATATA
*
77252629 TAATCTATATTATATA
1 TAATATATATTATATA
77252645 TAA
1 TAA
77252648 AATCGTTGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (16 bp):
TAATATATATTATATA
Found at i:77258814 original size:21 final size:21
Alignment explanation
Indices: 77258757--77258816 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
77258747 TCCATATGAC
*
77258757 CGTGTGTCTCCTTTCACACGGG
1 CGTGTGCCTCC-TTCACACGGG
* * **
77258779 CATGTGCATTTTTCACACGGG
1 CGTGTGCCTCCTTCACACGGG
77258800 CGTGTGCCTCCTTCACA
1 CGTGTGCCTCCTTCACA
77258817 TGGTAGTGTA
Statistics
Matches: 29, Mismatches: 9, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
21 23 0.79
22 6 0.21
ACGTcount: A:0.13, C:0.32, G:0.23, T:0.32
Consensus pattern (21 bp):
CGTGTGCCTCCTTCACACGGG
Found at i:77282529 original size:18 final size:18
Alignment explanation
Indices: 77282508--77282571 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
77282498 ACTGCATGTG
77282508 TTCCATGCAAA-ACATGCA
1 TTCCATGCAAACA-ATGCA
*
77282526 TTCCATGCAACCAATGCA
1 TTCCATGCAAACAATGCA
* * * *
77282544 TTTCATGCGAACTATACA
1 TTCCATGCAAACAATGCA
77282562 TTCCATGCAA
1 TTCCATGCAA
77282572 TGTGCTGCAT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
18 36 0.97
19 1 0.03
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.27
Consensus pattern (18 bp):
TTCCATGCAAACAATGCA
Done.