Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 251 of 410
Found at i:77558311 original size:28 final size:28
Alignment explanation
Indices: 77558280--77558334 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
77558270 TATGGATTAT
* *
77558280 GGGTTTAGGGATTATGGTTTAAGGGTTG
1 GGGTTTAAGGATTATGGGTTAAGGGTTG
* *
77558308 GGGTTTAAGGTTTATGGGTTATGGGTT
1 GGGTTTAAGGATTATGGGTTAAGGGTT
77558335 AAGGGTTAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.16, C:0.00, G:0.42, T:0.42
Consensus pattern (28 bp):
GGGTTTAAGGATTATGGGTTAAGGGTTG
Found at i:77558336 original size:21 final size:21
Alignment explanation
Indices: 77558276--77558402 Score: 89
Period size: 21 Copynumber: 6.0 Consensus size: 21
77558266 CTTTTATGGA
*
77558276 TTATGGGTTTAGGGATTATGGT
1 TTATGGGTTT-GGGATTAAGGT
* * *
77558298 TTAAGGGTTGGGGTTTAAGGT
1 TTATGGGTTTGGGATTAAGGT
*
77558319 TTATGGGTTATGGG-TTAAGGG
1 TTATGGGTT-TGGGATTAAGGT
* * *
77558340 TTAGGGGTCTAGGATTAAGAGT
1 TTATGGGTTTGGGATTAAG-GT
* * *
77558362 TTAT-GTTTTAGGATTTAGGGT
1 TTATGGGTTTGGGA-TTAAGGT
77558383 TTAT-GGTTTAGGGATTAAGG
1 TTATGGGTTT-GGGATTAAGG
77558403 ATTAGTAGTT
Statistics
Matches: 82, Mismatches: 18, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
20 3 0.04
21 57 0.70
22 22 0.27
ACGTcount: A:0.21, C:0.01, G:0.37, T:0.41
Consensus pattern (21 bp):
TTATGGGTTTGGGATTAAGGT
Found at i:77558420 original size:7 final size:7
Alignment explanation
Indices: 77558280--77558422 Score: 67
Period size: 7 Copynumber: 20.1 Consensus size: 7
77558270 TATGGATTAT
77558280 GGGTTTA
1 GGGTTTA
*
77558287 GGGATTA
1 GGGTTTA
*
77558294 TGGTTTAA
1 GGGTTT-A
*
77558302 GGG-TTG
1 GGGTTTA
77558308 GGGTTTA
1 GGGTTTA
*
77558315 AGGTTTA
1 GGGTTTA
77558322 TGGG-TTA
1 -GGGTTTA
*
77558329 TGGGTTAA
1 -GGGTTTA
77558337 GGG-TTA
1 GGGTTTA
*
77558343 GGGGTCTA
1 -GGGTTTA
* *
77558351 GGATTAA
1 GGGTTTA
*
77558358 GAGTTTA
1 GGGTTTA
* *
77558365 TGTTTTA
1 GGGTTTA
*
77558372 GGATTTA
1 GGGTTTA
77558379 GGGTTTA
1 GGGTTTA
*
77558386 TGGTTTA
1 GGGTTTA
*
77558393 GGGATTA
1 GGGTTTA
* *
77558400 AGGATTA
1 GGGTTTA
*
77558407 GTAGTTTA
1 G-GGTTTA
77558415 GGGTTTA
1 GGGTTTA
77558422 G
1 G
77558423 TTAATTAGTG
Statistics
Matches: 98, Mismatches: 31, Indels: 14
0.69 0.22 0.10
Matches are distributed among these distances:
6 5 0.05
7 79 0.81
8 14 0.14
ACGTcount: A:0.22, C:0.01, G:0.37, T:0.41
Consensus pattern (7 bp):
GGGTTTA
Found at i:77559371 original size:60 final size:59
Alignment explanation
Indices: 77559234--77559382 Score: 153
Period size: 60 Copynumber: 2.5 Consensus size: 59
77559224 CTATTCAGAA
* * *
77559234 ATCAGAGT-TAACTAGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAG
1 ATCAGAGTAT-ACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG
* *
77559294 TATCAGAGTATACTGGGCCTAGCCCATGTCAGTATCAATCTGGGCCATAGCCCTATTACA-
1 -ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAG
*
77559354 AGTC-GAG-ATACATTGGGCCTTGCCCATAT
1 A-TCAGAGTATAC--TGGGCCTAGCCCATAT
77559383 TAACACAGTT
Statistics
Matches: 76, Mismatches: 7, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
58 4 0.05
59 4 0.05
60 47 0.62
61 20 0.26
62 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (59 bp):
ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG
Found at i:77562004 original size:19 final size:20
Alignment explanation
Indices: 77561966--77562009 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
77561956 ATTAGATTTA
* *
77561966 AAAAATATTGATAAATAAAT
1 AAAAACATTGATAAACAAAT
77561986 AAAAACATTGAT-AACAAAT
1 AAAAACATTGATAAACAAAT
77562005 AAAAA
1 AAAAA
77562010 TAAAATATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.23
Consensus pattern (20 bp):
AAAAACATTGATAAACAAAT
Found at i:77563274 original size:40 final size:40
Alignment explanation
Indices: 77563188--77563429 Score: 348
Period size: 40 Copynumber: 6.1 Consensus size: 40
77563178 TCACAAGCAC
*
77563188 ATTAATAGAAAACTGTATAATTTATCC-GG--AAGTATAT
1 ATTAATAGAAAACTGTATAATTTATCCGGGTAAAGTATGT
77563225 ATTAATAGAAAACTGTATAATTTATCCGGGTAAAGTATGT
1 ATTAATAGAAAACTGTATAATTTATCCGGGTAAAGTATGT
* *
77563265 ATTATTAGAAAACTGTATAATTTACCCGGGTAAAGTATGT
1 ATTAATAGAAAACTGTATAATTTATCCGGGTAAAGTATGT
* * *
77563305 ATTAACAGAAAACTGTATAATTTATCCGGATGAAGTATGT
1 ATTAATAGAAAACTGTATAATTTATCCGGGTAAAGTATGT
77563345 ATTAATAGAAAACTGTATAATTTA-CCTGGGTAAAGTATGT
1 ATTAATAGAAAACTGTATAATTTATCC-GGGTAAAGTATGT
* * * * *
77563385 ATTAACAGAAAATTGTATAATTTACCCGGATGAAGTATGT
1 ATTAATAGAAAACTGTATAATTTATCCGGGTAAAGTATGT
77563425 ATTAA
1 ATTAA
77563430 CAGATATACT
Statistics
Matches: 185, Mismatches: 15, Indels: 7
0.89 0.07 0.03
Matches are distributed among these distances:
37 27 0.15
38 2 0.01
39 2 0.01
40 152 0.82
41 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (40 bp):
ATTAATAGAAAACTGTATAATTTATCCGGGTAAAGTATGT
Found at i:77563402 original size:120 final size:117
Alignment explanation
Indices: 77563188--77563433 Score: 386
Period size: 120 Copynumber: 2.1 Consensus size: 117
77563178 TCACAAGCAC
*
77563188 ATTAATAGAAAACTGTATAATTTATCCGGAAGTATATATTAATAGAAAACTGTATAATTTATCCG
1 ATTAACAGAAAACTGTATAATTTATCCGGAAGTATATATTAATAGAAAACTGTATAATTTATCCG
** *
77563253 GGTAAAGTATGTATTATTAGAAAACTGTATAATTTACCCGGGTAAAGTATGT
66 GGTAAAGTATGTATTAACAGAAAACTGTATAATTTACCCGGATAAAGTATGT
*
77563305 ATTAACAGAAAACTGTATAATTTATCCGGATGAAGTATGTATTAATAGAAAACTGTATAATTTA-
1 ATTAACAGAAAACTGTATAATTTATCC-G--GAAGTATATATTAATAGAAAACTGTATAATTTAT
* *
77563369 CCTGGGTAAAGTATGTATTAACAGAAAATTGTATAATTTACCCGGATGAAGTATGT
63 CC-GGGTAAAGTATGTATTAACAGAAAACTGTATAATTTACCCGGATAAAGTATGT
77563425 ATTAACAGA
1 ATTAACAGA
77563434 TATACTTAAG
Statistics
Matches: 118, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
117 26 0.22
118 1 0.01
119 2 0.02
120 89 0.75
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.34
Consensus pattern (117 bp):
ATTAACAGAAAACTGTATAATTTATCCGGAAGTATATATTAATAGAAAACTGTATAATTTATCCG
GGTAAAGTATGTATTAACAGAAAACTGTATAATTTACCCGGATAAAGTATGT
Found at i:77563460 original size:18 final size:18
Alignment explanation
Indices: 77563437--77563471 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
77563427 TAACAGATAT
*
77563437 ACTTAAGATCTAGTTGGC
1 ACTTAAAATCTAGTTGGC
77563455 ACTTAAAATCTAGTTGG
1 ACTTAAAATCTAGTTGG
77563472 ACTACCACGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.34
Consensus pattern (18 bp):
ACTTAAAATCTAGTTGGC
Found at i:77563997 original size:16 final size:16
Alignment explanation
Indices: 77563976--77564007 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
77563966 ATAATGAATG
77563976 TTATTAAATTATATTT
1 TTATTAAATTATATTT
77563992 TTATTAAATTATATTT
1 TTATTAAATTATATTT
77564008 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTATTAAATTATATTT
Found at i:77569400 original size:43 final size:43
Alignment explanation
Indices: 77569338--77569501 Score: 202
Period size: 43 Copynumber: 3.8 Consensus size: 43
77569328 AATAATTTTT
* * * * *
77569338 TTAAAGGTTATGATTTTTAGCGGCGTTTGTGAGAAAAGTGCCG
1 TTAAAGGTCATGATCTTTAGCGGCGCTTGTGAAAAAAGAGCCG
* * * * * *
77569381 CTAAAGGTCAAGATTTTTAGCGGCGTTTGTGAAAAAAGCGCTG
1 TTAAAGGTCATGATCTTTAGCGGCGCTTGTGAAAAAAGAGCCG
*
77569424 TTAAAGGTCATGATCTTTAGCGGCGCTTGTGAAAAAAGAGGCG
1 TTAAAGGTCATGATCTTTAGCGGCGCTTGTGAAAAAAGAGCCG
* *
77569467 TTAAAAGTCATGATCTTTAGCGACGCTTGTGAAAA
1 TTAAAGGTCATGATCTTTAGCGGCGCTTGTGAAAA
77569502 CGCCGCTAAA
Statistics
Matches: 106, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 106 1.00
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (43 bp):
TTAAAGGTCATGATCTTTAGCGGCGCTTGTGAAAAAAGAGCCG
Found at i:77584300 original size:16 final size:16
Alignment explanation
Indices: 77584280--77584317 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
77584270 TTCTTCTTTT
*
77584280 TTTTTTTTTGGGTTAGG
1 TTTTTTTTAGGG-TAGG
77584297 TTTTTTTTAGGGTAGG
1 TTTTTTTTAGGGTAGG
77584313 TTTTT
1 TTTTT
77584318 CTTTTTCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.08, C:0.00, G:0.26, T:0.66
Consensus pattern (16 bp):
TTTTTTTTAGGGTAGG
Found at i:77584332 original size:16 final size:16
Alignment explanation
Indices: 77584313--77584347 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
77584303 TTAGGGTAGG
77584313 TTTTTCTTT-TTCTTTT
1 TTTTTCTTTGTT-TTTT
77584329 TTTTTCTTTGTTTTTT
1 TTTTTCTTTGTTTTTT
77584345 TTT
1 TTT
77584348 GGGTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.89
Consensus pattern (16 bp):
TTTTTCTTTGTTTTTT
Found at i:77585197 original size:30 final size:30
Alignment explanation
Indices: 77585161--77585222 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
77585151 TTTTGAAAAA
77585161 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
77585191 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
77585221 CA
1 CA
77585223 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:77585341 original size:14 final size:14
Alignment explanation
Indices: 77585318--77585352 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
77585308 TGAGTTGATT
77585318 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
77585331 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
77585345 TTTGAAAA
1 TTTGAAAA
77585353 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:77585653 original size:72 final size:73
Alignment explanation
Indices: 77585370--77585901 Score: 395
Period size: 72 Copynumber: 6.8 Consensus size: 73
77585360 ACATGTAACC
* * * *
77585370 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATAC
* *
77585435 CTCAGTGTGTGAT
62 CTCAGCGTGT-CT
* * *
77585448 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACC
*
77585513 TCAGCGCATGAGC-
63 TCAGCG--TG-TCT
* * *
77585526 CAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
77585591 ACGTGTCT
66 GCGTGTCT
* ** * * *
77585599 TGAGGCTCAACTCATTTCTCACAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
77585663 GCGTGTCC
66 GCGTGTCT
*
77585671 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTTTGAAATGCAGAAATTGAAA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-------TTTTTTGAAA-ACAGAAATTG---
** ** *
77585736 AATGGAAATTGAAAATACCTCGACGTGTGAT
55 -A---AAA-T--ACCT-CAGC---GTGT-CT
* * * *
77585767 CTGAGGCTCAGCTCACCTCTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCT
77585832 CAGCGTGTC-
64 CAGCGTGTCT
* *
77585841 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAAAATTGAAAA
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAA
77585902 ACGGAAATTG
Statistics
Matches: 364, Mismatches: 58, Indels: 67
0.74 0.12 0.14
Matches are distributed among these distances:
72 65 0.18
73 29 0.08
74 42 0.12
75 32 0.09
76 14 0.04
77 41 0.11
78 5 0.01
79 51 0.14
80 10 0.03
81 9 0.02
82 1 0.00
83 2 0.01
85 1 0.00
86 1 0.00
88 2 0.01
89 1 0.00
90 9 0.02
91 11 0.03
92 2 0.01
95 4 0.01
96 1 0.00
97 31 0.09
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:77585854 original size:171 final size:168
Alignment explanation
Indices: 77585567--77586044 Score: 700
Period size: 165 Copynumber: 2.9 Consensus size: 168
77585557 TGATTTTTTG
* * * ** * *
77585567 AAAACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCATTTCTCACAATATGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* * *
77585630 TGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
66 TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* *
77585694 ATATGAGTTGATTTTTTTTTTTTTGAAATGCAGAAATTGA
131 ATATGAGTTGA--TTTTTTTTTTTGAAAGGCAAAAATTGA
* *
77585734 AAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAGCTCACCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
77585799 TGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
77585864 AATATGAGTTGA----TTTTTTTGAAAGGCAAAAATTGA
130 AATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
* * * * *
77585899 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACCAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
77585964 TGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
77586029 AATATGAGTTGATTTT
130 AATATGAGTTGATTTT
77586045 GAAAAAGTAG
Statistics
Matches: 281, Mismatches: 22, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
165 155 0.55
167 27 0.10
168 1 0.00
169 29 0.10
171 69 0.25
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (168 bp):
AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
Found at i:77585863 original size:74 final size:75
Alignment explanation
Indices: 77585740--77585901 Score: 213
Period size: 74 Copynumber: 2.1 Consensus size: 75
77585730 TTGAAAAATG
* *
77585740 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAGCTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
77585805 TTTTGACAACA
65 TTTTGACAACA
* * *
77585816 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
77585879 TTTTGA-AAGGCA
65 TTTTGACAA--CA
*
77585891 AAAATTGAAAA
1 GAAATTGAAAA
77585902 ACGGAAATTG
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
73 2 0.03
74 41 0.54
75 12 0.16
76 21 0.28
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.28
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAACA
Found at i:77586030 original size:74 final size:75
Alignment explanation
Indices: 77585905--77586044 Score: 210
Period size: 74 Copynumber: 1.9 Consensus size: 75
77585895 TTGAAAAACG
* *
77585905 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACCAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACCAGTTGATTT
77585970 TTTTGACAACA
65 TTTTGACAACA
* * **
77585981 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACCAGTTGATTTT
77586045 GAAAAAGTAG
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
74 36 0.62
76 22 0.38
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACCAGTTGATTTT
TTTGACAACA
Found at i:77586235 original size:71 final size:71
Alignment explanation
Indices: 77586109--77586273 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
77586099 TGAACAACGT
* * * *
77586109 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
77586174 GAGTTG
66 GAGTTG
77586180 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
77586244 TGAGTTG
65 TGAGTTG
**
77586251 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
77586274 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
70 4 0.05
71 53 0.62
72 29 0.34
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:77586366 original size:121 final size:124
Alignment explanation
Indices: 77586149--77586375 Score: 361
Period size: 121 Copynumber: 1.9 Consensus size: 124
77586139 GCGTGACCTG
* *
77586149 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
77586214 TGCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 TGCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
* * * *
77586273 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
* *
77586335 TGCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
66 TGCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
77586376 AAAACTAAAA
Statistics
Matches: 95, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
121 60 0.63
122 7 0.07
123 1 0.01
124 27 0.28
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
TGCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
Found at i:77586639 original size:72 final size:74
Alignment explanation
Indices: 77586383--77586679 Score: 410
Period size: 71 Copynumber: 4.1 Consensus size: 74
77586373 TTTAAAACTA
*
77586383 AAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTG-AAAA
1 AAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAA
*
77586445 CA-ACAATTA
66 CAGA-AATTG
* ** *
77586454 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAGTTTTTTGAAAA
1 AAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAA
*
77586519 ACAGAAGTTG
65 ACAGAAATTG
* *
77586529 AAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTTG-AA
1 AAAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
77586592 AACAGAAATTG
64 AACAGAAATTG
* *
77586603 AAATTACCTCAGCGTGTCCCGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTGAAAAA
1 AAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAA
77586668 CAGAAATT-
66 CAGAAATTG
77586676 AAAA
1 AAAA
77586680 GGCTTAACTC
Statistics
Matches: 198, Mismatches: 19, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
71 48 0.24
72 34 0.17
73 9 0.05
74 44 0.22
75 30 0.15
76 1 0.01
77 32 0.16
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (74 bp):
AAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAA
CAGAAATTG
Found at i:77587000 original size:464 final size:466
Alignment explanation
Indices: 77586408--77587548 Score: 1789
Period size: 465 Copynumber: 2.4 Consensus size: 466
77586398 GTCCCGAGGC
* * * * *
77586408 TCAACTCACTTCTCGCAATATGAGTTGATT-TTGA-AAACA-ACAATTAAAAATACCTCAACGTG
1 TCAACCCACCTCTCGCAATGTGAGTTGATTCTTGACAAACAGA-AATTGAAATTACCTCAACGTG
* * * *
77586470 TCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAGTTTTTTGAAAAACAGAAGTTGAAAACA
65 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAGTTGAAAACA
*
77586535 CCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAACAGAAA
130 CCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAA
*
77586600 TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTTACCTCTCGCAATATGAGTTGA-TTTTTTGA
195 TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
77586664 AAAACAGAAATTAAAAGGCTTAACTCACCTCTCGCAACATGAGTCAATTTAAAACTAAAAGTACC
260 AAAACAGAAATTAAAAGGCTTAACTCACCTCTCGCAACATGAGTCAATTTAAAACTAAAAGTACC
*
77586729 TCAACTTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAA
325 TCAACTTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTAAA
* *
77586794 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAG
390 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGCTGATTTTGAAAAAGTAG
77586859 AAATTAAAAGGT
455 AAATTAAAAGGT
* *
77586871 TC-TCCCACCTCTCGCAATGTGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACCCACCTCTCGCAATGTGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCAACGTGT
*
77586935 CCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAAAGACAGAAGTTGAAAACAC
66 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAGTTGAAAACAC
*
77587000 CTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAACAGAAAT
131 CTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAAT
77587065 TGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
196 TGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
*
77587130 TAACAGAAATTAAAAGGCTTAACTCACCTCTCGCAACATGAGTCAATTTAAAACTAAAAGTACCT
261 AAACAGAAATTAAAAGGCTTAACTCACCTCTCGCAACATGAGTCAATTTAAAACTAAAAGTACCT
77587195 CAACTTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTAAAA
326 CAACTTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTAAAA
77587260 TTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGCTGATTTTGAAAAAGTAGA
391 TTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGCTGATTTTGAAAAAGTAGA
77587325 AATTAAAAGGT
456 AATTAAAAGGT
77587336 TCAACCCACCTCTCGCAATGTGAGTTGATTCTTGACAAACAGAAATTGAAAAACAGAAATTGAAA
1 TCAACCCACCTCTCGCAATGTGAGTTGATTCTTGACAAACAGAAATT--------GAAA-T----
* ** *
77587401 ATACCTCAGCGCGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT--ATGA
53 -TACCTCA--ACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAG-
* ** *
77587464 ACAGAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
114 ACAGAAGTTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
77587527 -TTTTGACGAACAGAAATTGAAA
179 TTTTTGA-AAACAGAAATTGAAA
77587549 AACAGAAATT
Statistics
Matches: 624, Mismatches: 31, Indels: 30
0.91 0.05 0.04
Matches are distributed among these distances:
462 23 0.04
463 6 0.01
464 201 0.32
465 214 0.34
466 43 0.07
474 4 0.01
475 1 0.00
478 6 0.01
479 48 0.08
480 9 0.01
481 24 0.04
482 45 0.07
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (466 bp):
TCAACCCACCTCTCGCAATGTGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCAACGTGT
CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAGTTGAAAACAC
CTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAAT
TGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
AAACAGAAATTAAAAGGCTTAACTCACCTCTCGCAACATGAGTCAATTTAAAACTAAAAGTACCT
CAACTTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTAAAA
TTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGCTGATTTTGAAAAAGTAGA
AATTAAAAGGT
Found at i:77587112 original size:72 final size:73
Alignment explanation
Indices: 77586876--77587140 Score: 372
Period size: 75 Copynumber: 3.6 Consensus size: 73
77586866 AAGGTTCTCC
* * * *
77586876 CACCTCTCGCAATGTGAGTTGA-TTCTTGACAAACAGAAATTGAAATTACCTCATCGTGTCCTGA
1 CACCTCTCGCAATATGAGTTGATTTTTTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCCGA
77586940 GGCTCAACT
65 GGCTCAACT
* * **
77586949 CACCTCTTGCAATATGAGTTGATTTTTTTGAAAGACAGAAGTTGAAAACACCTCAGCGTGTGACC
1 CACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAATTACCTCAGCGTGT--CC
77587014 CGAGGCTCAACT
62 CGAGGCTCAACT
*
77587026 CACCTCTCGTAATATGAGTTGA-TTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
1 CACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
77587090 GCTCAACT
66 GCTCAACT
77587098 CACCTCTCGCAATATGAGTTGATTTTTTTGAATAACAGAAATT
1 CACCTCTCGCAATATGAGTTGA-TTTTTTGAA-AACAGAAATT
77587141 AAAAGGCTTA
Statistics
Matches: 170, Mismatches: 14, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
72 35 0.21
73 20 0.12
74 34 0.20
75 48 0.28
77 33 0.19
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (73 bp):
CACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
GCTCAACT
Found at i:77587365 original size:54 final size:55
Alignment explanation
Indices: 77587282--77587387 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 55
77587272 GTCCTGAGGC
* *
77587282 TCAACTCACCTCTCACAATATGAGCTGATT-TTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCACAATATGAGCTGATTCTTGAAAAA-CAGAAATTGAAAAGGT
* * * *
77587336 TCAACCCACCTCTCGCAATGTGAGTTGATTCTTGACAAACAGAAATTGAAAA
1 TCAACCCACCTCTCACAATATGAGCTGATTCTTGAAAAACAGAAATTGAAAA
77587388 ACAGAAATTG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
54 33 0.75
55 11 0.25
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (55 bp):
TCAACCCACCTCTCACAATATGAGCTGATTCTTGAAAAACAGAAATTGAAAAGGT
Found at i:77587389 original size:14 final size:14
Alignment explanation
Indices: 77587367--77587401 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
77587357 GAGTTGATTC
*
77587367 TTGACAAACAGAAA
1 TTGAAAAACAGAAA
77587381 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
77587395 TTGAAAA
1 TTGAAAA
77587402 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.09, G:0.14, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:77587510 original size:74 final size:73
Alignment explanation
Indices: 77587387--77587549 Score: 247
Period size: 74 Copynumber: 2.2 Consensus size: 73
77587377 GAAATTGAAA
*
77587387 AACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AACAGAAATTGAAAATACCTCA-CGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
77587452 ATTTTTTTATG
65 A--TTTTGACG
* *
77587463 AACAGAAATTGAAATTACCTCA-GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAGAAATTGAAAATACCTCACGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
77587527 TTTTGACG
66 TTTTGACG
77587535 AACAGAAATTGAAAA
1 AACAGAAATTGAAAA
77587550 ACAGAAATTG
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
72 20 0.25
74 40 0.49
76 21 0.26
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (73 bp):
AACAGAAATTGAAAATACCTCACGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTGACG
Found at i:77587552 original size:14 final size:14
Alignment explanation
Indices: 77587535--77587563 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
77587525 GATTTTGACG
77587535 AACAGAAATTGAAA
1 AACAGAAATTGAAA
77587549 AACAGAAATTGAAA
1 AACAGAAATTGAAA
77587563 A
1 A
77587564 TACCTCTGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:77587564 original size:162 final size:167
Alignment explanation
Indices: 77587336--77587700 Score: 542
Period size: 162 Copynumber: 2.2 Consensus size: 167
77587326 ATTAAAAGGT
* *
77587336 TCAACCCACCTCTCGCAATGTGAGTTGATTCTTGACAAACAGAAATTGAAAAACAGAAATTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAAAACAGAAATTGAAA
* **
77587401 ATACCTCAGCGCGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TT-TTTA-TG
66 ATACCTCAGCGCGTGAGCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTCTTATAAATTG
* *
77587463 -AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
131 AAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGC
*
77587499 TCAACTCACCTCTCGCAATATGAGTTGATT-TTGACGAACAGAAATTGAAAAACAGAAATTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAAAACAGAAATTGAAA
*
77587563 ATACCTCTGCGCGTGAGCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTCTTGAACAACG
66 ATACCTCAGCGCGTGAGCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTCTT-----A--
77587628 TAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGC
124 TAAATTG-AAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGC
77587673 TCAACTCACCTCTCGCAATATGAGTTGA
1 TCAACTCACCTCTCGCAATATGAGTTGA
77587701 AATTAAAACA
Statistics
Matches: 181, Mismatches: 9, Indels: 13
0.89 0.04 0.06
Matches are distributed among these distances:
162 85 0.47
163 30 0.17
171 2 0.01
172 2 0.01
174 62 0.34
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (167 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAAAACAGAAATTGAAA
ATACCTCAGCGCGTGAGCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTCTTATAAATTG
AAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGC
Found at i:77587687 original size:86 final size:86
Alignment explanation
Indices: 77587463--77587700 Score: 365
Period size: 88 Copynumber: 2.7 Consensus size: 86
77587453 TTTTTTTATG
* *
77587463 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
77587528 TTTGACGAACAGAAATTGAAA
66 TTTGACGAACAGAAATTGAAA
* * *
77587549 AACAGAAATTGAAAATACCTCTGCGCGTGAGCTGAGGCCCAACTCACCTCTCGCAATATGAGTTG
1 AACAGAAATTGAAAATACCTC--AGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
77587614 ATTCTTGAAC-AAC-GTAAATTG-AA
64 ATT-TTG-ACGAACAG-AAATTGAAA
77587637 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
77587701 AATTAAAACA
Statistics
Matches: 139, Mismatches: 8, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
86 60 0.43
88 65 0.47
89 12 0.09
90 2 0.01
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (86 bp):
AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTGACGAACAGAAATTGAAA
Found at i:77587763 original size:72 final size:71
Alignment explanation
Indices: 77587629--77587794 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
77587619 TGAACAACGT
* * * *
77587629 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
77587694 GAGTTG
66 GAGTTG
*
77587700 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
77587765 TGAGTTG
65 TGAGTTG
**
77587772 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
77587795 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:77587889 original size:122 final size:121
Alignment explanation
Indices: 77587669--77588171 Score: 516
Period size: 122 Copynumber: 4.0 Consensus size: 121
77587659 GCGTGACCTG
* * * *
77587669 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACAAAAACTAAAAATACCTCAGCG
77587734 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
63 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAAAAATTAAA
* *
77587794 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACAAAAACTAAAAATACCTCAGCGTGC
* *
77587859 CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAA
66 CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATT-AAA
** * * * * * * *
77587916 ATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAAT-ATGAGTTGATTAAAACACAAAAT
1 A-GGCTCAAC---TC---A-CCTC-TCGCA-ATAT-G-AGTCA--A--T--TTAAAACA-AAAAC
* *
77587980 TGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTAAAAAA
47 TAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT-GAAAA
77588045 CAAAAATTAAA
111 CAAAAATTAAA
* *
77588056 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTT------AAAACTAAAAATACCTCAGCGTGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACAAAAACTAAAAATACCTCAGCGTGC
* * *
77588115 CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAACAATTAAA
66 CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
77588171 A
1 A
77588172 ATACCTCAAC
Statistics
Matches: 317, Mismatches: 39, Indels: 54
0.77 0.10 0.13
Matches are distributed among these distances:
115 15 0.05
116 59 0.19
121 12 0.04
122 67 0.21
123 14 0.04
124 1 0.00
125 28 0.09
126 2 0.01
127 1 0.00
128 2 0.01
129 3 0.01
130 5 0.02
131 6 0.02
132 5 0.02
133 3 0.01
134 2 0.01
135 1 0.00
136 2 0.01
137 1 0.00
139 13 0.04
140 63 0.20
141 12 0.04
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (121 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACAAAAACTAAAAATACCTCAGCGTGC
CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
Found at i:77587937 original size:71 final size:70
Alignment explanation
Indices: 77587794--77588056 Score: 352
Period size: 69 Copynumber: 3.7 Consensus size: 70
77587784 AAAAATTAAA
* * * * *
77587794 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAGCGTG
77587858 CCCCG
66 CCCCG
* *
77587863 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-AAAACAAAAATTAAAAATACCTCAGCGT
* **
77587928 GTCTTG
65 GCCCCG
* *
77587934 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAATTGAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAACA-AAAATTAAAAATACCTCAGCGT
77587997 GCCCCG
65 GCCCCG
*
77588003 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTAAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT--AAAACAAAAATTAAAA
77588057 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 20, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
68 6 0.04
69 81 0.49
70 5 0.03
71 60 0.36
72 9 0.05
73 6 0.04
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (70 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAGCGTG
CCCCG
Found at i:77588137 original size:63 final size:66
Alignment explanation
Indices: 77588056--77588218 Score: 181
Period size: 71 Copynumber: 2.4 Consensus size: 66
77588046 AAAAATTAAA
* * *
77588056 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTT-AA-AAC-TAAAAATACCTCAGCGTGTCCC
1 AGGCTCAACTCACTTCTCGCAATATGAGTCAATTTAAACAACATAAAAATACCTCAACGTGTCCC
77588118 G
66 G
* *
77588119 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAACAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAG-TCAATTT--AAACAAC-A-TAAAAATACCTCAACGT
**
77588184 GTCTTG
61 GTCCCG
77588190 AGGCTCAACTCA-TCTCTCGCAATATGAGT
1 AGGCTCAACTCACT-TCTCGCAATATGAGT
77588219 TGATTTTCCT
Statistics
Matches: 84, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
63 26 0.31
64 5 0.06
67 2 0.02
68 3 0.04
70 2 0.02
71 46 0.55
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (66 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTCAATTTAAACAACATAAAAATACCTCAACGTGTCCC
G
Found at i:77593074 original size:37 final size:38
Alignment explanation
Indices: 77592956--77593191 Score: 221
Period size: 36 Copynumber: 6.4 Consensus size: 38
77592946 AAACCAAGTA
* * *
77592956 CCTTCGGATTTAG-CCGGATATAG-CACTCGCTCAAAT-
1 CCTTC-GACTTAGCCCGGATATAGTAACTCGCACAAATG
77592992 CCTTCGACTTAG-CCGGATATAGTAAC-CGCAC-AAT-
1 CCTTCGACTTAGCCCGGATATAGTAACTCGCACAAATG
77593026 CCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTC-GACTTAGCCCGGATATAGTAACTCGCACAAATG
77593065 CCTTC-ACTTAGCCC-GATATAGTAACTCGCACAAATG
1 CCTTCGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
77593101 CCTTC-ACTTAGCCCGGA-ATTAG-CACTTAGCACAAATG
1 CCTTCGACTTAGCCCGGATA-TAGTAAC-TCGCACAAATG
* * * *
77593138 CCTTCGGGACTTAGCCCGAAT-TAGTCACTAGCACATA-G
1 CCTTC--GACTTAGCCCGGATATAGTAACTCGCACAAATG
77593176 CCTTCGGGACTTAGCC
1 CCTTC--GACTTAGCC
77593192 GGTTACCATC
Statistics
Matches: 179, Mismatches: 7, Indels: 26
0.84 0.03 0.12
Matches are distributed among these distances:
34 8 0.04
35 27 0.15
36 60 0.34
37 34 0.19
38 20 0.11
39 16 0.09
40 14 0.08
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.25
Consensus pattern (38 bp):
CCTTCGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77593133 original size:73 final size:72
Alignment explanation
Indices: 77592956--77593156 Score: 209
Period size: 73 Copynumber: 2.8 Consensus size: 72
77592946 AAACCAAGTA
* * * * *
77592956 CCTTCGGATTTAG-CCGGATATAG-CACTCGCTCAAAT-CCTTCGACTTAGCCGGATATAGTAAC
1 CCTTC-GACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGACTTAGCCCGATATAGTAAC
77593018 CGCACAAT
65 CGCACAAT
*
77593026 CCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-ACTTAGCCCGATATAGTAAC
1 CCTTC-GACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGACTTAGCCCGATATAGTAAC
77593090 TCGCACAAAT
65 -CGCAC-AAT
*
77593100 GCCTTC-ACTTAGCCCGGA-ATTAG-CACTTAGCACAAATGCCTTCGGGACTTAGCCCGA
1 -CCTTCGACTTAGCCCGGATA-TAGTAAC-TAGCACAAATGCCTTC--GACTTAGCCCGA
77593157 ATTAGTCACT
Statistics
Matches: 114, Mismatches: 6, Indels: 16
0.84 0.04 0.12
Matches are distributed among these distances:
70 12 0.11
71 10 0.09
72 33 0.29
73 40 0.35
74 3 0.03
75 5 0.04
76 11 0.10
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (72 bp):
CCTTCGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGACTTAGCCCGATATAGTAACC
GCACAAT
Found at i:77601103 original size:40 final size:40
Alignment explanation
Indices: 77601033--77601290 Score: 387
Period size: 40 Copynumber: 6.5 Consensus size: 40
77601023 AAACCAAGTA
* *
77601033 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
77601072 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
77601112 CCTTCGGGACTTAGCTCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
77601152 CCTTCAGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
77601192 CCTTCGGGACTTAGCCCGAATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
77601232 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
77601272 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77601291 TTACCATCCG
Statistics
Matches: 203, Mismatches: 13, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
39 15 0.07
40 188 0.93
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77614035 original size:54 final size:54
Alignment explanation
Indices: 77613855--77614062 Score: 213
Period size: 55 Copynumber: 3.9 Consensus size: 54
77613845 TTTCCTTTTT
* * * * * *
77613855 GAACTTACCATTGCCACGTCTTGACATGGTCTTACGTGGTATCCTTGCTTTAT-
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * ** * * * *
77613908 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCCTTTCCATAGA
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * *
77613962 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATAATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* *
77614017 GAACTTATCAATGCCATGTCTTGGA-ATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGTCTT-GACATGGTCTTACATGATATCCTT
77614063 ATCTTACCAA
Statistics
Matches: 126, Mismatches: 26, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
53 41 0.33
54 40 0.32
55 45 0.36
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:77614095 original size:47 final size:47
Alignment explanation
Indices: 77614042--77614162 Score: 188
Period size: 47 Copynumber: 2.6 Consensus size: 47
77614032 ATGTCTTGGA
* * * *
77614042 ATGGTCTTACATGATATCCTTATCTTACCAAATGTCAAGTTCCTAAC
1 ATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCAAGTTCCAAAC
*
77614089 ATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAAC
1 ATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCAAGTTCCAAAC
*
77614136 ATGGTCTTACATGGTATCATTGTCTTA
1 ATGGTCTTACATGGTATCCTTGTCTTA
77614163 GTGCCAATGC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.37
Consensus pattern (47 bp):
ATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCAAGTTCCAAAC
Found at i:77623117 original size:11 final size:11
Alignment explanation
Indices: 77623103--77623147 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
77623093 AGATAAATAT
77623103 TATTTTATTAA
1 TATTTTATTAA
*
77623114 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
77623127 TATTTTATTAT
1 TATTTTATTAA
77623138 TATTTTATTA
1 TATTTTATTA
77623148 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:77625267 original size:46 final size:46
Alignment explanation
Indices: 77625215--77625396 Score: 276
Period size: 46 Copynumber: 4.0 Consensus size: 46
77625205 AGTGTGCTCT
77625215 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
77625261 CTGATATGAAATGTGTAAGACCATGGTTGGAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
77625307 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
77625353 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
77625397 TCACGTCAAA
Statistics
Matches: 125, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
45 1 0.01
46 124 0.99
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:77627577 original size:79 final size:77
Alignment explanation
Indices: 77627468--77627687 Score: 277
Period size: 79 Copynumber: 2.8 Consensus size: 77
77627458 TACTCGTTCA
* * *
77627468 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
77627533 TTAGTGACTCGCACC
65 TTAGT-ACTCGCA-C
*
77627548 AATGCCTTCGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGA
77627611 TTTAGTACTCGCAC
64 TTTAGTACTCGCAC
* * * *
77627625 AATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTT-GGGACTTAGCCCGGA
1 AATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
77627688 CATCATTCGA
Statistics
Matches: 125, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
77 22 0.18
78 35 0.28
79 56 0.45
80 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (77 bp):
AATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT
TAGTACTCGCAC
Found at i:77627582 original size:39 final size:40
Alignment explanation
Indices: 77627468--77627687 Score: 240
Period size: 40 Copynumber: 5.6 Consensus size: 40
77627458 TACTCGTTCA
* *
77627468 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACC
* *
77627508 AATGCCTTCGGGACTTAACCCGGATTTAGTGACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACC
* *
77627548 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACC
*
77627587 AATGCCTTC-GGATCTTAGTCCGGATTTAGT-ACTCGCA-C
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACC
* * * *
77627625 AATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA-C
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACC
*
77627665 AAAGCCTT-GGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
77627688 CATCATTCGA
Statistics
Matches: 159, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 31 0.19
39 51 0.32
40 75 0.47
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACC
Found at i:77635742 original size:74 final size:74
Alignment explanation
Indices: 77635541--77635756 Score: 210
Period size: 74 Copynumber: 2.9 Consensus size: 74
77635531 TACTCGTTCA
* * * * *
77635541 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCAGG-CTTAGCCCGGAAT-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGA
77635605 TTTAGTAACTCGCAC
64 --T--TAACTCGCAC
* *
77635620 AATGCCTTCAGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGAT
1 AATGCCTTCAGGCTTAGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGA-CTTAGCCCGGAT
77635684 TAACTCGCAC
65 TAACTCGCAC
* *
77635694 AATGCCTTC-GGATCTTAGTCC-G-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 AATGCCTTCAGG--CTTAGCCCGGAAT-TAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCCCG
77635755 GA
62 GA
77635757 CATCATTCGA
Statistics
Matches: 121, Mismatches: 9, Indels: 19
0.81 0.06 0.13
Matches are distributed among these distances:
73 4 0.03
74 42 0.35
75 18 0.15
76 1 0.01
77 3 0.02
78 41 0.34
79 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (74 bp):
AATGCCTTCAGGCTTAGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATT
AACTCGCAC
Found at i:77635750 original size:39 final size:40
Alignment explanation
Indices: 77635520--77635756 Score: 239
Period size: 40 Copynumber: 6.1 Consensus size: 40
77635510 CGGAATTTAA
** *
77635520 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77635560 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77635600 CCGGATTTAGTAACTCGCAC-AATGCCTTCAGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
77635638 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
*
77635678 CCGG--AT--TAACTCGCAC-AATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
77635713 CC-GATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
77635752 CCGGA
1 CCGGA
77635757 CATCATTCGA
Statistics
Matches: 170, Mismatches: 14, Indels: 26
0.81 0.07 0.12
Matches are distributed among these distances:
34 1 0.01
35 21 0.12
36 12 0.07
38 29 0.17
39 40 0.24
40 67 0.39
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:77654748 original size:22 final size:22
Alignment explanation
Indices: 77654720--77654767 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
77654710 TATACTCTCT
* *
77654720 AACACAACCATTATAGCCACTA
1 AACACAACCAATATACCCACTA
* *
77654742 AACACAACTAATATACCCTCTA
1 AACACAACCAATATACCCACTA
77654764 AACA
1 AACA
77654768 TATCCACTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.48, C:0.31, G:0.02, T:0.19
Consensus pattern (22 bp):
AACACAACCAATATACCCACTA
Found at i:77656356 original size:16 final size:16
Alignment explanation
Indices: 77656306--77656359 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
77656296 GTTTTTTGTC
* *
77656306 TTATGTTTAAATACATA
1 TTAT-TTTAATTATATA
*
77656323 TTAGTTT-ATTAT-TA
1 TTATTTTAATTATATA
77656337 TTATTTTAATTATATA
1 TTATTTTAATTATATA
77656353 TTATTTT
1 TTATTTT
77656360 TTATTTTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
14 8 0.26
15 8 0.26
16 12 0.39
17 3 0.10
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (16 bp):
TTATTTTAATTATATA
Found at i:77656356 original size:19 final size:17
Alignment explanation
Indices: 77656328--77656373 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
77656318 ACATATTAGT
77656328 TTATTATTATTATTTTAA
1 TTATTATTATT-TTTTAA
77656346 TTATATATTATTTTTT-A
1 TTAT-TATTATTTTTTAA
77656363 TT-TTATT-TTTT
1 TTATTATTATTTT
77656374 CATGCTCTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
14 4 0.15
15 4 0.15
16 1 0.04
17 3 0.11
18 8 0.30
19 7 0.26
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (17 bp):
TTATTATTATTTTTTAA
Found at i:77656369 original size:28 final size:29
Alignment explanation
Indices: 77656294--77656371 Score: 86
Period size: 30 Copynumber: 2.7 Consensus size: 29
77656284 ATTTTTACTC
* *
77656294 TAGTTTTTTGTCTTATGTTTAAATACATAT
1 TAGTTTTTTATTTTAT-TTTAAATACATAT
* * *
77656324 TAGTTTATTATTATTATTTTAATTATATAT
1 TAGTTTTTTATT-TTATTTTAAATACATAT
77656354 TA-TTTTTTATTTTATTTT
1 TAGTTTTTTATTTTATTTT
77656372 TTCATGCTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
28 7 0.17
29 8 0.20
30 22 0.54
31 4 0.10
ACGTcount: A:0.27, C:0.03, G:0.05, T:0.65
Consensus pattern (29 bp):
TAGTTTTTTATTTTATTTTAAATACATAT
Found at i:77658672 original size:26 final size:26
Alignment explanation
Indices: 77658643--77658695 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
77658633 AAGGACCAAG
77658643 ATAATTACTCATACGGAAAGAATAAA
1 ATAATTACTCATACGGAAAGAATAAA
** *
77658669 ATAATTACTTGTATGGAAAGAATAAA
1 ATAATTACTCATACGGAAAGAATAAA
77658695 A
1 A
77658696 GAATATTTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.53, C:0.08, G:0.13, T:0.26
Consensus pattern (26 bp):
ATAATTACTCATACGGAAAGAATAAA
Found at i:77659770 original size:25 final size:25
Alignment explanation
Indices: 77659742--77659810 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
77659732 CTCTTTAAAT
*
77659742 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
77659767 AACTGGGACAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
77659792 AACTAGGGCAAAG-CCTTTT
1 AACTGGGGCAAAGCCCTTTT
77659811 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 6 0.15
25 33 0.85
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:77659883 original size:21 final size:21
Alignment explanation
Indices: 77659859--77659917 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
77659849 TAATGAGTAT
*
77659859 ATCATGGCATATCATGTGCAC
1 ATCATGACATATCATGTGCAC
** *
77659880 ATCAAAACATATCATGTGCAT
1 ATCATGACATATCATGTGCAC
*
77659901 ATCATGTCATATCATGT
1 ATCATGACATATCATGT
77659918 ATAATAACAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (21 bp):
ATCATGACATATCATGTGCAC
Found at i:77659917 original size:10 final size:10
Alignment explanation
Indices: 77659857--77659917 Score: 59
Period size: 10 Copynumber: 5.9 Consensus size: 10
77659847 TATAATGAGT
*
77659857 ATATCATGGC
1 ATATCATGTC
77659867 ATATCATGTGC
1 ATATCATGT-C
* ***
77659878 ACATCAAAAC
1 ATATCATGTC
77659888 ATATCATGTGC
1 ATATCATGT-C
77659899 ATATCATGTC
1 ATATCATGTC
77659909 ATATCATGT
1 ATATCATGT
77659918 ATAATAACAA
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
10 24 0.60
11 16 0.40
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (10 bp):
ATATCATGTC
Found at i:77659985 original size:25 final size:25
Alignment explanation
Indices: 77659957--77660005 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
77659947 ATAATTAAAC
* * *
77659957 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
77659982 CCTAGGGGCAAAATAGTCATTTTT
1 CCTAGGGGCAAAATAGTCATTTTT
77660006 CATATTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:77660558 original size:19 final size:19
Alignment explanation
Indices: 77660534--77660571 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
77660524 GAAAACCTAC
77660534 AATTAAACATTACCACACT
1 AATTAAACATTACCACACT
77660553 AATTAAACATTACCACACT
1 AATTAAACATTACCACACT
77660572 TAGTGTGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.26
Consensus pattern (19 bp):
AATTAAACATTACCACACT
Found at i:77674537 original size:124 final size:123
Alignment explanation
Indices: 77674312--77674562 Score: 337
Period size: 124 Copynumber: 2.0 Consensus size: 123
77674302 AATACTATGA
* * * *
77674312 TTGAAAAAGTGAAAACAAAATAATATAAATTTTAAAATTTTACAATCTTTATACCTAGTGTTATC
1 TTGAAAAAGTAAAAACAAAATAATATAAATTTT-AAATTTTAAAATATTTATACCTAGTATTATC
** * * *
77674377 ATTAATATAAGTTAAGAATAAAAAATTAATCTTTAAAATAAAT-TTGAATTAATTATTTT
65 ACCAATATAAGTTAAGAATAAAAAAATAATATTTAAAAT-AATGTTGAATTAATTACTTT
* *
77674436 TTGAGAAAGTAAAAATAAAATAATATAAATATTT-AATTTTAAAAATATTTATACCTTA-TATTA
1 TTGAAAAAGTAAAAACAAAATAATATAAAT-TTTAAATTTT-AAAATATTTATACC-TAGTATTA
77674499 TCACCAATATAAGTTAAGAATAAAAAAATAATATTTAAAATAATGTTGAATTAATTACTTT
63 TCACCAATATAAGTTAAGAATAAAAAAATAATATTTAAAATAATGTTGAATTAATTACTTT
77674560 TTG
1 TTG
77674563 TTACAATATA
Statistics
Matches: 112, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
123 9 0.08
124 98 0.88
125 5 0.04
ACGTcount: A:0.49, C:0.05, G:0.06, T:0.39
Consensus pattern (123 bp):
TTGAAAAAGTAAAAACAAAATAATATAAATTTTAAATTTTAAAATATTTATACCTAGTATTATCA
CCAATATAAGTTAAGAATAAAAAAATAATATTTAAAATAATGTTGAATTAATTACTTT
Found at i:77677438 original size:14 final size:13
Alignment explanation
Indices: 77677415--77677456 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
77677405 TAATATTTGA
77677415 TTTATTATTTTAT
1 TTTATTATTTTAT
77677428 TTTAGTTA-TTTAT
1 TTTA-TTATTTTAT
*
77677441 TTTAATTGTTTTAT
1 TTT-ATTATTTTAT
77677455 TT
1 TT
77677457 GACTTGGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (13 bp):
TTTATTATTTTAT
Found at i:77678677 original size:15 final size:15
Alignment explanation
Indices: 77678659--77678732 Score: 67
Period size: 15 Copynumber: 4.9 Consensus size: 15
77678649 TCTGTTATGC
*
77678659 TCTATTATGTTATAT
1 TCTATTTTGTTATAT
* * * *
77678674 TCTACTTTATTCTAC
1 TCTATTTTGTTATAT
*
77678689 TCTATTTTGTTTTAT
1 TCTATTTTGTTATAT
*
77678704 TCTATTTTGGTTTTAT
1 TCTATTTT-GTTATAT
*
77678720 TCTGTTTTGTTAT
1 TCTATTTTGTTAT
77678733 GCTACCATTG
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
15 33 0.70
16 14 0.30
ACGTcount: A:0.16, C:0.11, G:0.08, T:0.65
Consensus pattern (15 bp):
TCTATTTTGTTATAT
Found at i:77678718 original size:16 final size:16
Alignment explanation
Indices: 77678689--77678728 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
77678679 TTTATTCTAC
77678689 TCTATTTT-GTTTTAT
1 TCTATTTTGGTTTTAT
77678704 TCTATTTTGGTTTTAT
1 TCTATTTTGGTTTTAT
*
77678720 TCTGTTTTG
1 TCTATTTTG
77678729 TTATGCTACC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.10, C:0.07, G:0.12, T:0.70
Consensus pattern (16 bp):
TCTATTTTGGTTTTAT
Found at i:77681945 original size:40 final size:39
Alignment explanation
Indices: 77681780--77681963 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
77681770 AAATTGAATG
* * *
77681780 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
77681820 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
77681860 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
77681900 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
77681939 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
77681964 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:77681988 original size:80 final size:81
Alignment explanation
Indices: 77681820--77682008 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
77681810 GCTGGAAATT
* * * *
77681820 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
77681885 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
77681901 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
77681964 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
77681980 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
77682009 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:77690030 original size:40 final size:39
Alignment explanation
Indices: 77689865--77690048 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
77689855 AAATTGAATG
* * *
77689865 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
77689905 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
77689945 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
77689985 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
77690024 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
77690049 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:77690073 original size:80 final size:81
Alignment explanation
Indices: 77689905--77690093 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
77689895 GCTGGAAATT
* * * *
77689905 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
77689970 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
77689986 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
77690049 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
77690065 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
77690094 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:77690285 original size:30 final size:30
Alignment explanation
Indices: 77690230--77690360 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
77690220 ATAGTGAATC
*
77690230 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
77690259 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
77690289 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
77690317 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
77690347 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77690361 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:77690340 original size:58 final size:58
Alignment explanation
Indices: 77690229--77690360 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
77690219 TATAGTGAAT
* * * * *
77690229 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
77690288 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
77690346 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
77690361 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:77698193 original size:28 final size:28
Alignment explanation
Indices: 77698161--77698261 Score: 150
Period size: 28 Copynumber: 3.5 Consensus size: 28
77698151 ATAGTGAATC
77698161 CGCACACTTAGTGCTATATATTTCAGCT
1 CGCACACTTAGTGCTATATATTTCAGCT
77698189 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-A-TTTCAGCT
* *
77698219 CGCACACTTAGTGCTATATA-ATCAAACT
1 CGCACACTTAGTGCTATATATTTC-AGCT
77698247 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77698262 GTACAATTTT
Statistics
Matches: 68, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
27 2 0.03
28 37 0.54
29 2 0.03
30 27 0.40
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATATTTCAGCT
Found at i:77698217 original size:30 final size:29
Alignment explanation
Indices: 77698161--77698290 Score: 158
Period size: 30 Copynumber: 4.5 Consensus size: 29
77698151 ATAGTGAATC
*
77698161 CGCACACTTAGTGCTATAT-ATTTCAGCT
1 CGCACACTTAGTGCTATATAATTTCAACT
*
77698189 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAA-TTTCAACT
77698219 CGCACACTTAGTGCTATATAA--TCAAACT
1 CGCACACTTAGTGCTATATAATTTC-AACT
* * * *
77698247 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTTCAACT
77698277 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77698291 CAATCTTGTC
Statistics
Matches: 91, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
27 2 0.02
28 41 0.45
29 1 0.01
30 46 0.51
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTTCAACT
Found at i:77698251 original size:58 final size:58
Alignment explanation
Indices: 77698160--77698290 Score: 183
Period size: 58 Copynumber: 2.3 Consensus size: 58
77698150 TATAGTGAAT
* * * * *
77698160 CCGCACACTTAGTGCTATATATTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
77698218 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
77698276 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
77698291 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
57 2 0.03
58 62 0.97
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:77705154 original size:24 final size:25
Alignment explanation
Indices: 77705087--77705163 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 25
77705077 TCTTTTTAAG
* *
77705087 TTATTTATTTATTTACTTCTTAAGTT
1 TTATTTATTTGTTTA-TTATTAAGTT
* *
77705113 TT-TTTATTTGTCCT-TTATTTA-TT
1 TTATTTATTTGT-TTATTATTAAGTT
*
77705136 TTATTTATTTGTTTATTATT-GGTT
1 TTATTTATTTGTTTATTATTAAGTT
77705160 TTAT
1 TTAT
77705164 AAAATTTGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
23 5 0.12
24 25 0.61
25 8 0.20
26 3 0.07
ACGTcount: A:0.18, C:0.05, G:0.06, T:0.70
Consensus pattern (25 bp):
TTATTTATTTGTTTATTATTAAGTT
Found at i:77705233 original size:20 final size:21
Alignment explanation
Indices: 77705158--77705250 Score: 91
Period size: 20 Copynumber: 4.3 Consensus size: 21
77705148 TTATTATTGG
* * *
77705158 TTTTATAAAATTTGAAATGTA
1 TTTTTTAAAATTTTAAATATA
*
77705179 -TATTTAAAATGTTTTATAATATTA
1 TTTTTTAAAA--TTTTA-AATA-TA
77705203 TTTTTTAAAATTTTAAATATA
1 TTTTTTAAAATTTTAAATATA
77705224 TTTTTT-AAATTTTAAATATAA
1 TTTTTTAAAATTTTAAATAT-A
77705245 TTTTTT
1 TTTTTT
77705251 TTAATATTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
20 20 0.33
21 15 0.25
22 8 0.13
23 8 0.13
24 2 0.03
25 8 0.13
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (21 bp):
TTTTTTAAAATTTTAAATATA
Found at i:77706944 original size:30 final size:30
Alignment explanation
Indices: 77706864--77706945 Score: 110
Period size: 30 Copynumber: 2.7 Consensus size: 30
77706854 TGGTTACTCT
* * *
77706864 GGGTGAAATGAACTCAAACAGCCTATGTCC
1 GGGTGATATGAACTCAAACCGCCCATGTCC
**
77706894 GGGTGATATGAACTTGAACCGCCCATGTCC
1 GGGTGATATGAACTCAAACCGCCCATGTCC
*
77706924 GGGTGATATTAACTCAAACCGC
1 GGGTGATATGAACTCAAACCGC
77706946 TCATATCGAG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.22
Consensus pattern (30 bp):
GGGTGATATGAACTCAAACCGCCCATGTCC
Found at i:77709617 original size:21 final size:23
Alignment explanation
Indices: 77709591--77709638 Score: 73
Period size: 21 Copynumber: 2.2 Consensus size: 23
77709581 TGACCAGTTG
*
77709591 TAATATATATTTTTA-AT-TTTT
1 TAATATAAATTTTTATATATTTT
77709612 TAATATAAATTTTTATATATTTT
1 TAATATAAATTTTTATATATTTT
77709635 TAAT
1 TAAT
77709639 TTTTAATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 14 0.58
22 2 0.08
23 8 0.33
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
TAATATAAATTTTTATATATTTT
Found at i:77709644 original size:30 final size:31
Alignment explanation
Indices: 77709594--77709656 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 31
77709584 CCAGTTGTAA
77709594 TATATATTTTTAATTTTTTAATATAAATTTT
1 TATATATTTTTAATTTTTTAATATAAATTTT
77709625 TATATATTTTTAA-TTTTTAATATAAATTTT
1 TATATATTTTTAATTTTTTAATATAAATTTT
77709655 TA
1 TA
77709657 CTTTTTAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 19 0.59
31 13 0.41
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (31 bp):
TATATATTTTTAATTTTTTAATATAAATTTT
Found at i:77709675 original size:22 final size:22
Alignment explanation
Indices: 77709625--77709676 Score: 81
Period size: 20 Copynumber: 2.5 Consensus size: 22
77709615 TATAAATTTT
77709625 TATATATTTTTAATTTTTAATA
1 TATATATTTTTAATTTTTAATA
*
77709647 TA-A-ATTTTTACTTTTTAATA
1 TATATATTTTTAATTTTTAATA
77709667 TATATATTTT
1 TATATATTTT
77709677 AAAGCAAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 18 0.67
21 2 0.07
22 7 0.26
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (22 bp):
TATATATTTTTAATTTTTAATA
Found at i:77709841 original size:15 final size:15
Alignment explanation
Indices: 77709817--77709854 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
77709807 ATCTTTAAAA
77709817 ATAA-TTAAAAAATT
1 ATAATTTAAAAAATT
77709831 ATAATTTAAAAAATT
1 ATAATTTAAAAAATT
77709846 AT-ATTTAAA
1 ATAATTTAAA
77709855 TTTAAATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
ATAATTTAAAAAATT
Found at i:77709887 original size:22 final size:21
Alignment explanation
Indices: 77709833--77709909 Score: 75
Period size: 22 Copynumber: 3.5 Consensus size: 21
77709823 AAAAAATTAT
*
77709833 AATTTAAAAAATTATATTT-A
1 AATTTATAAAATTATATTTAA
*
77709853 AATTTAAATAAATGTATATTTAA
1 AATTTATA-AAAT-TATATTTAA
* *
77709876 AATTTTTAAAATATACATTTAA
1 AATTTATAAAAT-TATATTTAA
77709898 AATATTATAAAA
1 AAT-TTATAAAA
77709910 CAAATAATAA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
20 8 0.17
21 4 0.08
22 22 0.46
23 14 0.29
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (21 bp):
AATTTATAAAATTATATTTAA
Found at i:77710004 original size:15 final size:16
Alignment explanation
Indices: 77709980--77710017 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
77709970 ATTAAAAAAT
77709980 ATTT-AAAAATA-ATA
1 ATTTAAAAAATATATA
77709994 ATTTAAAAAATATATA
1 ATTTAAAAAATATATA
*
77710010 TTTTAAAA
1 ATTTAAAA
77710018 TTTTAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 4 0.19
15 7 0.33
16 10 0.48
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATTTAAAAAATATATA
Found at i:77710018 original size:14 final size:14
Alignment explanation
Indices: 77709941--77710018 Score: 54
Period size: 15 Copynumber: 5.4 Consensus size: 14
77709931 CATATCTTTA
77709941 AAAATAATATATTTT
1 AAAAT-ATATATTTT
*
77709956 AAATATTTTATATTATT
1 AAA-A-TATATATT-TT
*
77709973 AAAA-A-ATATTTA
1 AAAATATATATTTT
*
77709985 AAAATA-ATAATTTAA
1 AAAATATAT-ATTT-T
77710000 AAAATATATATTTT
1 AAAATATATATTTT
77710014 AAAAT
1 AAAAT
77710019 TTTAAAAATG
Statistics
Matches: 52, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
12 5 0.10
13 8 0.15
14 9 0.17
15 14 0.27
16 10 0.19
17 6 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
AAAATATATATTTT
Found at i:77710032 original size:22 final size:23
Alignment explanation
Indices: 77709988--77710039 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
77709978 ATATTTAAAA
*
77709988 ATAATAATTTAAAAAATATATATT
1 ATAA-AATTTAAAAAATAGATATT
* *
77710012 TTAAAATTTTAAAAAT-GATATT
1 ATAAAATTTAAAAAATAGATATT
77710034 ATAAAA
1 ATAAAA
77710040 CATTTCAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
22 10 0.42
23 11 0.46
24 3 0.12
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (23 bp):
ATAAAATTTAAAAAATAGATATT
Found at i:77710141 original size:24 final size:21
Alignment explanation
Indices: 77710114--77710173 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 21
77710104 TGACAAATAA
77710114 AAAAAACTTAAAAAGTAAATAAAT
1 AAAAAACTTAAAAAG--AA-AAAT
77710138 AAAAAACTTAAAAAGAAAAAT
1 AAAAAACTTAAAAAGAAAAAT
* *
77710159 AAAAAAATGAAAAAG
1 AAAAAACTTAAAAAG
77710174 GACAAAGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 17 0.50
22 2 0.06
24 15 0.44
ACGTcount: A:0.75, C:0.03, G:0.07, T:0.15
Consensus pattern (21 bp):
AAAAAACTTAAAAAGAAAAAT
Found at i:77710158 original size:25 final size:23
Alignment explanation
Indices: 77710108--77710165 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 23
77710098 AATAAATGAC
*
77710108 AAAT-AAAAAAAACTTAAAAAGT
1 AAATAAAAAAAAACTTAAAAAGA
77710130 AAATAAATAAAAAACTTAAAAAGAA
1 AAATAAA-AAAAAACTTAAAAAG-A
77710155 AAATAAAAAAA
1 AAATAAAAAAA
77710166 TGAAAAAGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
22 4 0.12
23 2 0.06
24 19 0.59
25 7 0.22
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.16
Consensus pattern (23 bp):
AAATAAAAAAAAACTTAAAAAGA
Found at i:77714010 original size:8 final size:9
Alignment explanation
Indices: 77713992--77714029 Score: 69
Period size: 9 Copynumber: 4.3 Consensus size: 9
77713982 AAAAGTCTCC
77713992 AATTAAAAA
1 AATTAAAAA
77714001 AATTAAAAA
1 AATTAAAAA
77714010 AATT-AAAA
1 AATTAAAAA
77714018 AATTAAAAA
1 AATTAAAAA
77714027 AAT
1 AAT
77714030 CAATTAAACC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 8 0.29
9 20 0.71
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
AATTAAAAA
Found at i:77714017 original size:7 final size:8
Alignment explanation
Indices: 77713992--77714027 Score: 54
Period size: 8 Copynumber: 4.2 Consensus size: 8
77713982 AAAAGTCTCC
77713992 AATTAAAAA
1 AATT-AAAA
77714001 AATTAAAAA
1 AATT-AAAA
77714010 AATTAAAA
1 AATTAAAA
77714018 AATTAAAA
1 AATTAAAA
77714026 AA
1 AA
77714028 ATCAATTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 14 0.52
9 13 0.48
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (8 bp):
AATTAAAA
Found at i:77714017 original size:17 final size:18
Alignment explanation
Indices: 77713992--77714029 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
77713982 AAAAGTCTCC
77713992 AATTAAAAAAATTAAAAA
1 AATTAAAAAAATTAAAAA
77714010 AATT-AAAAAATTAAAAA
1 AATTAAAAAAATTAAAAA
77714027 AAT
1 AAT
77714030 CAATTAAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (18 bp):
AATTAAAAAAATTAAAAA
Found at i:77715810 original size:22 final size:22
Alignment explanation
Indices: 77715782--77715841 Score: 104
Period size: 22 Copynumber: 2.8 Consensus size: 22
77715772 AATAGTTGGG
*
77715782 CAGCTTGGGGAAGAGAAATCAA
1 CAGCTTGGGAAAGAGAAATCAA
77715804 CAGCTTGGGAAAGAGAAATCAA
1 CAGCTTGGGAAAGAGAAATCAA
77715826 CAGCTTGGGAAA-AGAA
1 CAGCTTGGGAAAGAGAA
77715842 GCATCGGCTC
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
21 4 0.11
22 33 0.89
ACGTcount: A:0.43, C:0.13, G:0.30, T:0.13
Consensus pattern (22 bp):
CAGCTTGGGAAAGAGAAATCAA
Found at i:77716727 original size:20 final size:19
Alignment explanation
Indices: 77716704--77716759 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 19
77716694 TTTTGTACAA
77716704 TTTATATATTTTAAAATATT
1 TTTATATATTTTAAAAT-TT
* *
77716724 TTTATGA-CTTTTAATATTT
1 TTTAT-ATATTTTAAAATTT
*
77716743 TTTTTATCATTTTAAAA
1 TTTATAT-ATTTTAAAA
77716760 AAGAAAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
18 1 0.04
19 6 0.21
20 20 0.71
21 1 0.04
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.61
Consensus pattern (19 bp):
TTTATATATTTTAAAATTT
Found at i:77731765 original size:50 final size:47
Alignment explanation
Indices: 77731706--77731815 Score: 141
Period size: 46 Copynumber: 2.3 Consensus size: 47
77731696 CTGTATCAAC
77731706 CTCACACACTAAGTTCCAATATACAGATATATAGCTGAAGCTATCTCGAT
1 CTCACACACTAAGTTCCAA-AT--AGATATATAGCTGAAGCTATCTCGAT
* * * *
77731756 CTCGCACACTAAG-TGCAAATATATATATAGCTGAAGCTATCTTGAT
1 CTCACACACTAAGTTCCAAATAGATATATAGCTGAAGCTATCTCGAT
*
77731802 TTCACACACTAAGT
1 CTCACACACTAAGT
77731816 GCACATAATT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
46 35 0.66
48 2 0.04
49 4 0.08
50 12 0.23
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (47 bp):
CTCACACACTAAGTTCCAAATAGATATATAGCTGAAGCTATCTCGAT
Found at i:77732343 original size:21 final size:20
Alignment explanation
Indices: 77732319--77732359 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
77732309 ACTTGTATAA
77732319 CTATCATCAAACATTCAAAAT
1 CTATCATCAAACA-TCAAAAT
*
77732340 CTATCATTAAACATCAAAAT
1 CTATCATCAAACATCAAAAT
77732360 ACTCATGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.29
Consensus pattern (20 bp):
CTATCATCAAACATCAAAAT
Found at i:77736560 original size:2 final size:2
Alignment explanation
Indices: 77736555--77736610 Score: 105
Period size: 2 Copynumber: 28.5 Consensus size: 2
77736545 AAAAAGAATA
77736555 AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77736596 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
77736611 ACATAAAACA
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 52 0.98
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:77736682 original size:17 final size:18
Alignment explanation
Indices: 77736653--77736695 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
77736643 CAGAATAGCC
77736653 AAAGGGAAGAAAG-AAAG
1 AAAGGGAAGAAAGAAAAG
77736670 AAAGGAGAA-AAAGAAAAG
1 AAAGG-GAAGAAAGAAAAG
*
77736688 AAAAGGAA
1 AAAGGGAA
77736696 AAATTAGGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (18 bp):
AAAGGGAAGAAAGAAAAG
Found at i:77737072 original size:11 final size:11
Alignment explanation
Indices: 77737046--77737079 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
77737036 GATTAAAATT
*
77737046 GAAATTAAAGTA
1 GAAATTGAA-TA
77737058 GAAATTGAATA
1 GAAATTGAATA
77737069 GAAATTGAATA
1 GAAATTGAATA
77737080 ATAAATTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 13 0.62
12 8 0.38
ACGTcount: A:0.56, C:0.00, G:0.18, T:0.26
Consensus pattern (11 bp):
GAAATTGAATA
Found at i:77737787 original size:43 final size:42
Alignment explanation
Indices: 77737739--77737820 Score: 96
Period size: 43 Copynumber: 1.9 Consensus size: 42
77737729 ATAGGATTGG
77737739 AAGTGTTC-AGGGATACTTCGACCTT-GAGTCGATGAGGCACTAT
1 AAGTG-TCGAGGG-TACTTCGA-CTTCGAGTCGATGAGGCACTAT
**
77737782 AAGTGTCGTATTGTACTTCGACTTCGAGTCGATGAGGCA
1 AAGTGTCG-AGGGTACTTCGACTTCGAGTCGATGAGGCA
77737821 GCAGTGTGTC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
42 5 0.15
43 27 0.79
44 2 0.06
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (42 bp):
AAGTGTCGAGGGTACTTCGACTTCGAGTCGATGAGGCACTAT
Found at i:77737889 original size:47 final size:47
Alignment explanation
Indices: 77737830--77737930 Score: 123
Period size: 47 Copynumber: 2.1 Consensus size: 47
77737820 AGCAGTGTGT
** * *
77737830 CGTACTGCTACTA-TTACTTCGGTTTAATCCGATGAGGTACTGAGTAC
1 CGTACTGCTACTATTTACTTCGG-CAAAGCCGATGAGGCACTGAGTAC
* *
77737877 CGTACTGTTACTATTTACTTCGGCAAAGCCGATGAGGCACTGAGTGC
1 CGTACTGCTACTATTTACTTCGGCAAAGCCGATGAGGCACTGAGTAC
*
77737924 CATACTG
1 CGTACTG
77737931 GTGTGTTGGT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
47 37 0.80
48 9 0.20
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (47 bp):
CGTACTGCTACTATTTACTTCGGCAAAGCCGATGAGGCACTGAGTAC
Found at i:77738017 original size:18 final size:18
Alignment explanation
Indices: 77737994--77738073 Score: 70
Period size: 18 Copynumber: 4.4 Consensus size: 18
77737984 TGAATAAAGG
*
77737994 TACTGAATGACTGACTGT
1 TACTGAATAACTGACTGT
* *
77738012 TACTGAATAATTGATTGT
1 TACTGAATAACTGACTGT
* * *
77738030 TACTGAATAAATGATTGC
1 TACTGAATAACTGACTGT
* * * *
77738048 TACTAAAAAATTGATTGT
1 TACTGAATAACTGACTGT
77738066 TACTGAAT
1 TACTGAAT
77738074 GATATTGATT
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 51 1.00
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (18 bp):
TACTGAATAACTGACTGT
Found at i:77738034 original size:36 final size:36
Alignment explanation
Indices: 77737994--77738075 Score: 110
Period size: 36 Copynumber: 2.3 Consensus size: 36
77737984 TGAATAAAGG
* * * *
77737994 TACTGAATGACTGACTGTTACTGAATAATTGATTGT
1 TACTGAATGAATGACTGCTACTAAAAAATTGATTGT
* *
77738030 TACTGAATAAATGATTGCTACTAAAAAATTGATTGT
1 TACTGAATGAATGACTGCTACTAAAAAATTGATTGT
77738066 TACTGAATGA
1 TACTGAATGA
77738076 TATTGATTAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (36 bp):
TACTGAATGAATGACTGCTACTAAAAAATTGATTGT
Found at i:77738100 original size:28 final size:28
Alignment explanation
Indices: 77738056--77738109 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
77738046 GCTACTAAAA
* **
77738056 AATTGATTGTTACTGAATGATATTGATT
1 AATTGATTGGTACTGAAAAATATTGATT
*
77738084 AATTGATTGGTATTGAAAAATATTGA
1 AATTGATTGGTACTGAAAAATATTGA
77738110 CTGATATTGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.37, C:0.02, G:0.19, T:0.43
Consensus pattern (28 bp):
AATTGATTGGTACTGAAAAATATTGATT
Found at i:77738977 original size:21 final size:21
Alignment explanation
Indices: 77738946--77739001 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
77738936 CAGGCTCTCA
*
77738946 ACATAGCCGTGTGACCTAGCG
1 ACATCGCCGTGTGACCTAGCG
* * *
77738967 ATATCGCCGTGTGATCTAGTG
1 ACATCGCCGTGTGACCTAGCG
*
77738988 ACATGGCCGTGTGA
1 ACATCGCCGTGTGA
77739002 GTCACACACC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.25
Consensus pattern (21 bp):
ACATCGCCGTGTGACCTAGCG
Found at i:77742869 original size:50 final size:47
Alignment explanation
Indices: 77742803--77742916 Score: 140
Period size: 46 Copynumber: 2.4 Consensus size: 47
77742793 AGTTGTATCA
*
77742803 ATCTTGCACACTAAGTGCCAATATACATATATATAGCTAAAGCTATCTCG
1 ATCTCGCACACTAAGTGCCAA-AT--ATATATATAGCTAAAGCTATCTCG
* * *
77742853 ATCTCGCACACCAAGTG-CAAATATATATATAGCTGAAGCTATCTTG
1 ATCTCGCACACTAAGTGCCAAATATATATATAGCTAAAGCTATCTCG
* *
77742899 ATTTCGTACACTAAGTGC
1 ATCTCGCACACTAAGTGC
77742917 ACATAATTAG
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
46 36 0.64
48 2 0.04
49 3 0.05
50 15 0.27
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (47 bp):
ATCTCGCACACTAAGTGCCAAATATATATATAGCTAAAGCTATCTCG
Found at i:77743163 original size:14 final size:14
Alignment explanation
Indices: 77743144--77743171 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
77743134 AGCTTATTTA
77743144 ATAATCCCTCTATT
1 ATAATCCCTCTATT
77743158 ATAATCCCTCTATT
1 ATAATCCCTCTATT
77743172 CAATTTAGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43
Consensus pattern (14 bp):
ATAATCCCTCTATT
Found at i:77743471 original size:20 final size:21
Alignment explanation
Indices: 77743432--77743472 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
77743422 ACTTGTATAA
77743432 CTATCATTAAACATTCAAAAT
1 CTATCATTAAACATTCAAAAT
77743453 CTATCATTAAACA-TCAAAAT
1 CTATCATTAAACATTCAAAAT
77743473 ACTCATGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.32
Consensus pattern (21 bp):
CTATCATTAAACATTCAAAAT
Found at i:77744235 original size:28 final size:28
Alignment explanation
Indices: 77744215--77744269 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
77744205 ATAAAATATG
77744215 AATAACATTCATCATTTAATAAATAAAT
1 AATAACATTCATCATTTAATAAATAAAT
*
77744243 TATAACATTCATCATTTAATAAATAAA
1 AATAACATTCATCATTTAATAAATAAA
77744270 CTTCAAAGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (28 bp):
AATAACATTCATCATTTAATAAATAAAT
Found at i:77750633 original size:53 final size:53
Alignment explanation
Indices: 77750550--77750653 Score: 190
Period size: 53 Copynumber: 2.0 Consensus size: 53
77750540 ATACTCAGAT
77750550 TTTGACTTAGAATAGATCAATATATCATCGATAAACACAACCAAAAATCTAAA
1 TTTGACTTAGAATAGATCAATATATCATCGATAAACACAACCAAAAATCTAAA
* *
77750603 TTTGACTTGGAATAGATCAATATATTATCGATAAACACAACCAAAAATCTA
1 TTTGACTTAGAATAGATCAATATATCATCGATAAACACAACCAAAAATCTA
77750654 TCCAAATAAG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.28
Consensus pattern (53 bp):
TTTGACTTAGAATAGATCAATATATCATCGATAAACACAACCAAAAATCTAAA
Found at i:77755284 original size:19 final size:21
Alignment explanation
Indices: 77755246--77755286 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
77755236 TGTTTTTGTA
*
77755246 TAGCTTCCTCATGTTCCCATG
1 TAGCTTCCTCATGATCCCATG
77755267 TAGCTTCCTC-T-ATCCCATG
1 TAGCTTCCTCATGATCCCATG
77755286 T
1 T
77755287 TTATGCCAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 1 0.05
21 10 0.53
ACGTcount: A:0.15, C:0.34, G:0.12, T:0.39
Consensus pattern (21 bp):
TAGCTTCCTCATGATCCCATG
Found at i:77777268 original size:34 final size:34
Alignment explanation
Indices: 77777220--77777289 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
77777210 GTACCAGTGA
* *
77777220 TGACGTCAAGAGCATCTCTGTCTTCTCGGCGACG
1 TGACATCAAGAGCATCTCTGTCCTCTCGGCGACG
*
77777254 TGACATCAAGAGCATCTCTGTCCTCTCTGCGACG
1 TGACATCAAGAGCATCTCTGTCCTCTCGGCGACG
77777288 TG
1 TG
77777290 TAGCATGAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.19, C:0.30, G:0.24, T:0.27
Consensus pattern (34 bp):
TGACATCAAGAGCATCTCTGTCCTCTCGGCGACG
Found at i:77781111 original size:33 final size:32
Alignment explanation
Indices: 77781074--77781150 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 32
77781064 TGGCCCTGCC
* * *
77781074 ATGGTCTTACATTCATTG-TGCTATAACCCAGTT
1 ATGGTCTTACA-TCA-GGATGCCATAACCCAGCT
*
77781107 ATGGTCTTATCATCAGGATGCCATAGCCCAGCT
1 ATGGTCTTA-CATCAGGATGCCATAACCCAGCT
77781140 ATGGTCTTACA
1 ATGGTCTTACA
77781151 CATATATATA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
32 3 0.08
33 33 0.87
34 2 0.05
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (32 bp):
ATGGTCTTACATCAGGATGCCATAACCCAGCT
Found at i:77799063 original size:33 final size:33
Alignment explanation
Indices: 77799021--77799087 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
77799011 ATATTAAAAT
77799021 TCAATAGAGATTGAACTTTTATAATTTAGTCTA
1 TCAATAGAGATTGAACTTTTATAATTTAGTCTA
77799054 TCAATAGAGATTGAACTTTTATAATTTAGTCTA
1 TCAATAGAGATTGAACTTTTATAATTTAGTCTA
77799087 T
1 T
77799088 GAACTATAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.43
Consensus pattern (33 bp):
TCAATAGAGATTGAACTTTTATAATTTAGTCTA
Found at i:77808035 original size:39 final size:40
Alignment explanation
Indices: 77807988--77808085 Score: 126
Period size: 39 Copynumber: 2.5 Consensus size: 40
77807978 GGACTAGGAT
*
77807988 CCGAAGGCATTCGTGCGAGATAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGATAATAAACCCGGGCTAAGTC
* * * * * *
77808027 CCGAAGGCATTTGTACAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAATAAACCCGGGCTAAGTC
77808067 CCGAAGGCATTCGTGCGAG
1 CCGAAGGCATTCGTGCGAG
77808086 TCACTATAAC
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
39 31 0.65
40 17 0.35
ACGTcount: A:0.29, C:0.23, G:0.28, T:0.20
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATAATAAACCCGGGCTAAGTC
Found at i:77808073 original size:79 final size:80
Alignment explanation
Indices: 77807935--77808085 Score: 200
Period size: 79 Copynumber: 1.9 Consensus size: 80
77807925 TCGAATGATG
* * * *
77807935 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCTTTGTACTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
77808000 GTGCGAGATAATAAA
66 GTGCGAGATAATAAA
* **
77808015 TCCGGGCTAAG-CCCGAAGGCATTTGTAC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTACTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
77808077 TCGTGCGAG
64 TCGTGCGAG
77808086 TCACTATAAC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.02
79 44 0.71
80 17 0.27
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTACTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGATAATAAA
Found at i:77808076 original size:40 final size:40
Alignment explanation
Indices: 77807935--77808119 Score: 162
Period size: 40 Copynumber: 4.7 Consensus size: 40
77807925 TCGAATGATG
* *
77807935 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * * *
77807975 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGATAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
*
77808015 TCCGGGCTAAG-CCCGAAGGCATTTGTACAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * *
77808054 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
* **
77808095 -CAGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77808120 AGCGAGTCGT
Statistics
Matches: 114, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
39 31 0.27
40 74 0.65
41 9 0.08
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:77809825 original size:29 final size:29
Alignment explanation
Indices: 77809783--77809864 Score: 146
Period size: 29 Copynumber: 2.8 Consensus size: 29
77809773 TGCCGTATTT
**
77809783 TTTCCAGCTTGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
77809812 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
77809841 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCACGCACACTTAGTGCC
77809865 GATCTCGTCA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCATATA
Found at i:77818541 original size:79 final size:82
Alignment explanation
Indices: 77818401--77818585 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 82
77818391 TCGAATGATG
* * *
77818401 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCAGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCAGACTAAGATCCGAAGGCATT
77818465 CGTGCGAGAT-AATA-AA
66 CGTGCGAG-TCAATATAA
* * **
77818481 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCAGACTAAGAT-CCGAAGGCAT
*
77818543 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
77818561 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77818586 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 2 0.02
79 54 0.60
80 34 0.38
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCAGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:77818542 original size:40 final size:40
Alignment explanation
Indices: 77818401--77818585 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 40
77818391 TCGAATGATG
* *
77818401 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * * * *
77818441 TCCAGACTAGGAT-CCGAAGGCATTCGTGCGAGATAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
77818481 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * *
77818520 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
**
77818561 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77818586 AGCGAGTCGT
Statistics
Matches: 115, Mismatches: 25, Indels: 10
0.77 0.17 0.07
Matches are distributed among these distances:
39 32 0.28
40 74 0.64
41 9 0.08
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:77818616 original size:79 final size:79
Alignment explanation
Indices: 77818453--77818618 Score: 176
Period size: 79 Copynumber: 2.1 Consensus size: 79
77818443 CAGACTAGGA
* *
77818453 TCCGAAGGCATTCGTGCGAGATAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTA
1 TCCGAAGGCATTCGTGCGAGATAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
*
77818518 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * ** * *
77818532 CCCGAAGGCATTCGTGCGAG-TCACTATAA-CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCG
1 TCCGAAGGCATTCGTGCGAGAT-AATA-AATCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCA
* * *
77818595 TTATATCC-GGTTAAAT
63 CTAAACCCGGGTTAAAT
77818611 TCCGAAGG
1 TCCGAAGG
77818619 TACGTGATTC
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
78 1 0.01
79 44 0.62
80 26 0.37
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGATAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
AACCCGGGTTAAAT
Found at i:77823467 original size:2 final size:2
Alignment explanation
Indices: 77823460--77823492 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
77823450 AAAACTATTC
77823460 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
77823493 TTAATGTTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:77826105 original size:17 final size:17
Alignment explanation
Indices: 77826083--77826117 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
77826073 ATAATAAACA
77826083 ACTTATAATTTTAAGTT
1 ACTTATAATTTTAAGTT
77826100 ACTTATAATTTTAAGTT
1 ACTTATAATTTTAAGTT
77826117 A
1 A
77826118 TTCTCCGGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.06, G:0.06, T:0.51
Consensus pattern (17 bp):
ACTTATAATTTTAAGTT
Found at i:77834731 original size:107 final size:110
Alignment explanation
Indices: 77834486--77834775 Score: 302
Period size: 119 Copynumber: 2.7 Consensus size: 110
77834476 AAAAAAATTA
*
77834486 TTATGTTAGTAATTTATGATTAGGTTACATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGAG
1 TTATGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTA-T----
77834551 TATTGTGATTTTTTTAGTAATAATATGTTTTAAAAAATAATAATTTTATAGCTATT
61 TA---TGA-TTTTTTAGTAATAATA--TTTTAAAAAATAATAATTTTATAGCTATT
*
77834607 TTAT-TT-GTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTATGA
1 TTATGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTATGA
* *
77834670 TTTTTTAGTAAT-GTA-TTTAAAAAA-AATAAATTTT-TAGTTATT
66 TTTTTTAGTAATAATATTTTAAAAAATAAT-AATTTTATAGCTATT
* * * *
77834712 TTGTGTTAATAATTTATG---A---T-TATAAATTGTTAGTGTTTA-TAGTTTAGTGTTTTGTGA
1 TTATGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTATGA
77834769 TTTTTTA
66 TTTTTTA
77834776 ATGTAACTTT
Statistics
Matches: 157, Mismatches: 9, Indels: 28
0.81 0.05 0.14
Matches are distributed among these distances:
99 22 0.14
100 19 0.12
101 1 0.01
104 1 0.01
105 13 0.08
106 17 0.11
107 9 0.06
109 2 0.01
110 12 0.08
111 3 0.02
114 2 0.01
118 1 0.01
119 49 0.31
120 2 0.01
121 4 0.03
ACGTcount: A:0.31, C:0.01, G:0.16, T:0.52
Consensus pattern (110 bp):
TTATGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTATGA
TTTTTTAGTAATAATATTTTAAAAAATAATAATTTTATAGCTATT
Found at i:77834803 original size:15 final size:16
Alignment explanation
Indices: 77834774--77834805 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
77834764 TGTGATTTTT
77834774 TAATGTAACTTTTATA
1 TAATGTAACTTTTATA
77834790 TAATGTAA-TTTTATA
1 TAATGTAACTTTTATA
77834805 T
1 T
77834806 TATTATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (16 bp):
TAATGTAACTTTTATA
Found at i:77835109 original size:23 final size:22
Alignment explanation
Indices: 77835065--77835109 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
77835055 GTTTCTAAAA
* * *
77835065 TTTGAAATAATTTATTGTATTT
1 TTTGAAATAATTAAATGAATTT
77835087 TTTGAAATAAATTAAATGAATTT
1 TTTGAAAT-AATTAAATGAATTT
77835110 AATTTTTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (22 bp):
TTTGAAATAATTAAATGAATTT
Found at i:77836912 original size:33 final size:33
Alignment explanation
Indices: 77836847--77836918 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
77836837 CCGGCCTGTG
* *
77836847 TCCACCACTGTACTCCACTCCTCTAAAGCCGTA
1 TCCACCACCGTACTCCACTCCTCTAAACCCGTA
* *
77836880 TCCACCACCGTACTCTACTCCTCCT-GACCCGTA
1 TCCACCACCGTACTCCACTCCT-CTAAACCCGTA
77836913 TCCACC
1 TCCACC
77836919 GTCATATTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 32 0.94
34 2 0.06
ACGTcount: A:0.21, C:0.47, G:0.08, T:0.24
Consensus pattern (33 bp):
TCCACCACCGTACTCCACTCCTCTAAACCCGTA
Found at i:77836930 original size:33 final size:33
Alignment explanation
Indices: 77836875--77836938 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
77836865 TCCTCTAAAG
* *
77836875 CCGTATCCACCACCGTACTCTACTCCTCCTGAC
1 CCGTATCCACCACCATACTCTACTCCCCCTGAC
** *
77836908 CCGTATCCACCGTCATATTCTACTCCCCCTG
1 CCGTATCCACCACCATACTCTACTCCCCCTG
77836939 GCTCAAGTTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.17, C:0.47, G:0.09, T:0.27
Consensus pattern (33 bp):
CCGTATCCACCACCATACTCTACTCCCCCTGAC
Found at i:77840621 original size:27 final size:26
Alignment explanation
Indices: 77840539--77840625 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 26
77840529 TTGTGGGCCC
*
77840539 ACTAGTCGCGGCTACCAAGAAGGCTCA
1 ACTAGTCGCGCCTACC-AGAAGGCTCA
* * *
77840566 ACAAGTCGCACCTACCATGAAGGCACA
1 ACTAGTCGCGCCTACCA-GAAGGCTCA
* *
77840593 ACTAGTCGCGCCTGCCAGATAGACTCA
1 ACTAGTCGCGCCTACCAGA-AGGCTCA
77840620 ACTAGT
1 ACTAGT
77840626 TGAGCTTGTC
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.06
27 46 0.94
ACGTcount: A:0.31, C:0.31, G:0.22, T:0.16
Consensus pattern (26 bp):
ACTAGTCGCGCCTACCAGAAGGCTCA
Done.