Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 252 of 410
Found at i:77846507 original size:18 final size:18
Alignment explanation
Indices: 77846480--77846526 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
77846470 GCCCATACCT
* *
77846480 GACACAAGTCACGGCCAC
1 GACACTAGTCACGCCCAC
*
77846498 GACACTAGTCGCGCCCAC
1 GACACTAGTCACGCCCAC
*
77846516 GACTCTAGTCA
1 GACACTAGTCA
77846527 AGATAGAGAG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.28, C:0.38, G:0.21, T:0.13
Consensus pattern (18 bp):
GACACTAGTCACGCCCAC
Found at i:77850952 original size:31 final size:31
Alignment explanation
Indices: 77850921--77851086 Score: 305
Period size: 31 Copynumber: 5.4 Consensus size: 31
77850911 ATACTAGGCT
*
77850921 GAAGCCTTTACATTATTCATACCACTGGGCT
1 GAAGCCTTTACATTATTCATACCACTGGGCC
77850952 GAAGCCTTTACATTATTCATACCACTGGGCC
1 GAAGCCTTTACATTATTCATACCACTGGGCC
77850983 GAAGCCTTTACATTATTCATACCACTGGGCC
1 GAAGCCTTTACATTATTCATACCACTGGGCC
77851014 GAAGCCTTTACATTATTCATACCACTGGGCC
1 GAAGCCTTTACATTATTCATACCACTGGGCC
* *
77851045 GAAGCCTTTTCATTATTCATATCACTGGGCC
1 GAAGCCTTTACATTATTCATACCACTGGGCC
77851076 GAAGCCTTTAC
1 GAAGCCTTTAC
77851087 TGTAAACGGT
Statistics
Matches: 131, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 131 1.00
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (31 bp):
GAAGCCTTTACATTATTCATACCACTGGGCC
Found at i:77851333 original size:25 final size:25
Alignment explanation
Indices: 77851305--77851374 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
77851295 CTCTTTTAAT
*
77851305 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
77851330 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
77851355 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
77851375 GCACTTCCAC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:77851444 original size:11 final size:11
Alignment explanation
Indices: 77851407--77851470 Score: 80
Period size: 11 Copynumber: 6.1 Consensus size: 11
77851397 ACCCAACCCA
77851407 TGCATAT-ATG
1 TGCATATCATG
**
77851417 TATATATCATG
1 TGCATATCATG
77851428 -GCATATCATG
1 TGCATATCATG
77851438 TGCATATCATG
1 TGCATATCATG
77851449 TGCATATCATG
1 TGCATATCATG
*
77851460 -GCATATTATG
1 TGCATATCATG
77851470 T
1 T
77851471 ACAAATCAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
10 22 0.48
11 24 0.52
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (11 bp):
TGCATATCATG
Found at i:77851444 original size:21 final size:21
Alignment explanation
Indices: 77851420--77851470 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
77851410 ATATATGTAT
77851420 ATATCATG-GCATATCATGTGC
1 ATATCATGTGCATATCATG-GC
77851441 ATATCATGTGCATATCATGGC
1 ATATCATGTGCATATCATGGC
*
77851462 ATATTATGT
1 ATATCATGT
77851471 ACAAATCAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
21 18 0.64
22 10 0.36
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (21 bp):
ATATCATGTGCATATCATGGC
Found at i:77851459 original size:32 final size:31
Alignment explanation
Indices: 77851407--77851470 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 31
77851397 ACCCAACCCA
*
77851407 TGCATATATGTATATATCATGGCATATCATG
1 TGCATATATGTACATATCATGGCATATCATG
* *
77851438 TGCATATCATGTGCATATCATGGCATATTATG
1 TGCATAT-ATGTACATATCATGGCATATCATG
77851470 T
1 T
77851471 ACAAATCAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 7 0.24
32 22 0.76
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (31 bp):
TGCATATATGTACATATCATGGCATATCATG
Found at i:77851478 original size:21 final size:22
Alignment explanation
Indices: 77851432--77851478 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
77851422 ATCATGGCAT
* *
77851432 ATCATGTGCATATCATGTGCAT
1 ATCATGTGCATATCATGTACAA
*
77851454 ATCATG-GCATATTATGTACAA
1 ATCATGTGCATATCATGTACAA
77851475 ATCA
1 ATCA
77851479 GTATCACATG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (22 bp):
ATCATGTGCATATCATGTACAA
Found at i:77853948 original size:19 final size:20
Alignment explanation
Indices: 77853912--77853950 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
77853902 CCTACCTACC
77853912 CAAATAAACCAAATTACCCA
1 CAAATAAACCAAATTACCCA
*
77853932 CAAATAAACC-CATTACCCA
1 CAAATAAACCAAATTACCCA
77853951 ATAAGCCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.51, C:0.33, G:0.00, T:0.15
Consensus pattern (20 bp):
CAAATAAACCAAATTACCCA
Found at i:77855739 original size:230 final size:230
Alignment explanation
Indices: 77855331--77855786 Score: 858
Period size: 230 Copynumber: 2.0 Consensus size: 230
77855321 CAACGTCCAT
* *
77855331 ACATCAATGCTAGGGAGCAAGAGAAGCAACCTCTTTCTGTGGAGGCACGTTTAAGTCGGATCGAA
1 ACATCAATGCTAGGGAGCAAGAGAAGCAACCTCTGTCTATGGAGGCACGTTTAAGTCGGATCGAA
*
77855396 GCTCGACTTGGAACAATGGAAAACCAATTCTCCACAATCCTTGACATCCTACAAAGCCATTACCC
66 GCTCGACTTGGAACAATGGAAAACCAAGTCTCCACAATCCTTGACATCCTACAAAGCCATTACCC
77855461 CCAACTCCAACAAAATCATTAAAAGACACATAGGGAGTATTCTGAACTTTTCTTTTACATGTTAT
131 CCAACTCCAACAAAATCATTAAAAGACACATAGGGAGTATTCTGAACTTTTCTTTTACATGTTAT
*
77855526 TAAGAGCTGCTATTTTTATTTCATTTAACACCTAC
196 TAAGAGCTGCTATTTTTATTTCAGTTAACACCTAC
77855561 ACATCAATGCTAGGGAGCAAGAGAAGCAACCTCTGTCTATGGAGGCACGTTTAAGTCGGATCGAA
1 ACATCAATGCTAGGGAGCAAGAGAAGCAACCTCTGTCTATGGAGGCACGTTTAAGTCGGATCGAA
77855626 GCTCGACTTGGAACAATGGAAAACCAAGTCTCCACAATCCTTGACATCCTACAAAGCCATTACCC
66 GCTCGACTTGGAACAATGGAAAACCAAGTCTCCACAATCCTTGACATCCTACAAAGCCATTACCC
* *
77855691 CCAACTCCAACAAAGTCATTAAAAGACACATAGGGAGTATTTTGAACTTTTCTTTTACATGTTAT
131 CCAACTCCAACAAAATCATTAAAAGACACATAGGGAGTATTCTGAACTTTTCTTTTACATGTTAT
77855756 TAAGAGCTGCTATTTTTATTTCAGTTAACAC
196 TAAGAGCTGCTATTTTTATTTCAGTTAACAC
77855787 TTGCTGGAGG
Statistics
Matches: 220, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
230 220 1.00
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.27
Consensus pattern (230 bp):
ACATCAATGCTAGGGAGCAAGAGAAGCAACCTCTGTCTATGGAGGCACGTTTAAGTCGGATCGAA
GCTCGACTTGGAACAATGGAAAACCAAGTCTCCACAATCCTTGACATCCTACAAAGCCATTACCC
CCAACTCCAACAAAATCATTAAAAGACACATAGGGAGTATTCTGAACTTTTCTTTTACATGTTAT
TAAGAGCTGCTATTTTTATTTCAGTTAACACCTAC
Found at i:77863312 original size:34 final size:34
Alignment explanation
Indices: 77863269--77863337 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
77863259 ATTGACTAAG
77863269 AAATTAGTCTAAGAGCTAATGTGGTGTTCTTTAA
1 AAATTAGTCTAAGAGCTAATGTGGTGTTCTTTAA
77863303 AAATTAGTCTAAGAGCTAATGTGGTGTTCTTTAA
1 AAATTAGTCTAAGAGCTAATGTGGTGTTCTTTAA
77863337 A
1 A
77863338 TTTGGGGTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (34 bp):
AAATTAGTCTAAGAGCTAATGTGGTGTTCTTTAA
Found at i:77867249 original size:42 final size:42
Alignment explanation
Indices: 77867203--77867319 Score: 171
Period size: 42 Copynumber: 2.8 Consensus size: 42
77867193 TAAGATTACA
* *
77867203 TGTAAGACCATATCTGGGATATGGCATTGGTATAAGACTTTG
1 TGTAAGACCATATCTGGGATATGGCATCGATATAAGACTTTG
* *
77867245 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTTG
1 TGTAAGACCATATCTGGGATATGGCATCGATATAAGACTTTG
* *
77867287 TGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATA
77867320 CAATGTTTAC
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 57 0.84
43 11 0.16
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATAAGACTTTG
Found at i:77870645 original size:59 final size:59
Alignment explanation
Indices: 77870573--77870691 Score: 229
Period size: 59 Copynumber: 2.0 Consensus size: 59
77870563 AAATACTTAA
77870573 AATGACTACATTGGTATAATATAAGTGTGATGTTTTTGTTTCCTCAAGCTTTCAGTTTT
1 AATGACTACATTGGTATAATATAAGTGTGATGTTTTTGTTTCCTCAAGCTTTCAGTTTT
*
77870632 AATGATTACATTGGTATAATATAAGTGTGATGTTTTTGTTTCCTCAAGCTTTCAGTTTT
1 AATGACTACATTGGTATAATATAAGTGTGATGTTTTTGTTTCCTCAAGCTTTCAGTTTT
77870691 A
1 A
77870692 CTCTTCAATA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.26, C:0.11, G:0.17, T:0.46
Consensus pattern (59 bp):
AATGACTACATTGGTATAATATAAGTGTGATGTTTTTGTTTCCTCAAGCTTTCAGTTTT
Found at i:77875336 original size:27 final size:27
Alignment explanation
Indices: 77875298--77875350 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
77875288 AATCTGGACA
* *
77875298 TCGCCCTTTCACAAAGGATAGCTATTT
1 TCGCACTTTCACAAAGAATAGCTATTT
*
77875325 TCGCACTTTCACAACGAATAGCTATT
1 TCGCACTTTCACAAAGAATAGCTATT
77875351 CTAAATGGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.32
Consensus pattern (27 bp):
TCGCACTTTCACAAAGAATAGCTATTT
Found at i:77875459 original size:21 final size:22
Alignment explanation
Indices: 77875434--77875500 Score: 84
Period size: 22 Copynumber: 3.1 Consensus size: 22
77875424 CTTTAAAATT
77875434 AAATTTTAAAAAT-TTTATTTA
1 AAATTTTAAAAATATTTATTTA
*
77875455 AAATTTTAAAAAATAATT-TTTA
1 AAATTTT-AAAAATATTTATTTA
* *
77875477 AAATTTTTAAAATATGTATTTA
1 AAATTTTAAAAATATTTATTTA
77875499 AA
1 AA
77875501 TGTTATAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
21 14 0.36
22 23 0.59
23 2 0.05
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (22 bp):
AAATTTTAAAAATATTTATTTA
Found at i:77875501 original size:21 final size:21
Alignment explanation
Indices: 77875432--77875510 Score: 61
Period size: 22 Copynumber: 3.7 Consensus size: 21
77875422 ATCTTTAAAA
* *
77875432 TTAAATTTTAAAAAT-TTTAT
1 TTAAATTTTTAAAATATATAT
* * *
77875452 TTAAAATTTTAAAAAATAATTT
1 TTAAATTTTTAAAATAT-ATAT
*
77875474 TTAAAATTTTTAAAATATGTAT
1 TT-AAATTTTTAAAATATATAT
*
77875496 TTAAATGTTATAAAA
1 TTAAAT-TTTTAAAA
77875511 CAAATAATAA
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
20 12 0.27
21 5 0.11
22 15 0.33
23 13 0.29
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (21 bp):
TTAAATTTTTAAAATATATAT
Found at i:77875590 original size:13 final size:12
Alignment explanation
Indices: 77875566--77875607 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
77875556 TAAATATTTT
77875566 ATAATATTAAAA
1 ATAATATTAAAA
*
77875578 ATAATATTTAAA
1 ATAATATTAAAA
77875590 AT--T-TTAAAA
1 ATAATATTAAAA
77875599 ATAATATTA
1 ATAATATTA
77875608 TAAAGCATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
9 7 0.28
10 1 0.04
11 1 0.04
12 16 0.64
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
ATAATATTAAAA
Found at i:77875617 original size:24 final size:20
Alignment explanation
Indices: 77875558--77875621 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 20
77875548 ATATATTTTA
*
77875558 AATATTTTATAATATTAAAAAT
1 AATA-TTTAAAAT-TTAAAAAT
77875580 AATATTTAAAATTTTAAAAAT
1 AATATTTAAAA-TTTAAAAAT
77875601 AATATTATAAAGCATTTAAAA
1 AATATT-TAAA--ATTTAAAA
77875622 TATTGTAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
21 20 0.54
22 9 0.24
23 7 0.19
24 1 0.03
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (20 bp):
AATATTTAAAATTTAAAAAT
Found at i:77875623 original size:22 final size:21
Alignment explanation
Indices: 77875558--77875611 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
77875548 ATATATTTTA
* *
77875558 AATATTTTATAATATTAAAAAT
1 AATA-TTTAAAATTTTAAAAAT
77875580 AATATTTAAAATTTTAAAAAT
1 AATATTTAAAATTTTAAAAAT
77875601 AATATTATAAA
1 AATATT-TAAA
77875612 GCATTTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 21 0.72
22 8 0.28
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
AATATTTAAAATTTTAAAAAT
Found at i:77875651 original size:20 final size:21
Alignment explanation
Indices: 77875628--77875671 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
77875618 AAAATATTGT
*
77875628 AAAACAAA-TAAAAAACAGAA
1 AAAACAAATTAAAAAAAAGAA
77875648 AAAACAAATTAAAAAAAAGAA
1 AAAACAAATTAAAAAAAAGAA
77875669 AAA
1 AAA
77875672 GGACAATAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.82, C:0.07, G:0.05, T:0.07
Consensus pattern (21 bp):
AAAACAAATTAAAAAAAAGAA
Found at i:77883636 original size:17 final size:16
Alignment explanation
Indices: 77883614--77883656 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 16
77883604 TAACATCATA
77883614 TTGTTTAATATTATATG
1 TTGTTTAATA-TATATG
77883631 TTGTTTAA-A-ATATG
1 TTGTTTAATATATATG
77883645 TTGTTTTAATAT
1 TTG-TTTAATAT
77883657 CAACATTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
14 8 0.35
15 5 0.22
16 2 0.09
17 8 0.35
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (16 bp):
TTGTTTAATATATATG
Found at i:77894877 original size:4 final size:4
Alignment explanation
Indices: 77894868--77894905 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
77894858 TTGAGCCTTA
*
77894868 ATTT ATTT ATTT ATTT -TTC ATTTT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATTT ATTT A-TTT ATTT ATTT ATTT AT
77894906 GTACAATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
3 2 0.07
4 25 0.83
5 3 0.10
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:77895162 original size:22 final size:22
Alignment explanation
Indices: 77895137--77895185 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
77895127 GCAAAAATCG
*
77895137 ATCAATCATGTATACTTACCAT
1 ATCAATCATGCATACTTACCAT
77895159 ATCAATCATGCATACTTACCAT
1 ATCAATCATGCATACTTACCAT
*
77895181 TTCAA
1 ATCAA
77895186 CCCTCCACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.35
Consensus pattern (22 bp):
ATCAATCATGCATACTTACCAT
Found at i:77901059 original size:50 final size:49
Alignment explanation
Indices: 77900891--77901113 Score: 213
Period size: 50 Copynumber: 4.6 Consensus size: 49
77900881 CTAGGGGTAT
*
77900891 ATGAGAGCTAGTGTAAGAGCATGTCTGGGACATGGCATCGGCACCGATAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-ACCGATAG
* * * * ** *
77900941 ATGAAAGCCAGTGGAAGACCATGTCTGAGACATGGCATCGG-CTTA-AT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACCGATAG
* * * *
77900988 ATGTG-TC-AGTGTAAGACCATGTCTGGGACATGGGATTGGTACCGATAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-ACCGATAG
* * *
77901036 ATGAGAGCTAGTGTAAGAGCATGTCTGGGACATGGCATCGGCCTCGATAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGAC-CGATAG
** *
77901086 ACAAGA-TTCAGTGTAAGACCATGTCTGG
1 ATGAGAGCT-AGTGTAAGACCATGTCTGG
77901114 TTTGTGGCAT
Statistics
Matches: 137, Mismatches: 29, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
45 28 0.20
46 1 0.01
47 6 0.04
48 7 0.05
49 3 0.02
50 92 0.67
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.23
Consensus pattern (49 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACCGATAG
Found at i:77901068 original size:95 final size:95
Alignment explanation
Indices: 77900900--77901077 Score: 275
Period size: 95 Copynumber: 1.9 Consensus size: 95
77900890 TATGAGAGCT
*
77900900 AGTGTAAGAGCATGTCTGGGACATGGCATCGGCACCGATAGATGAAAGCCAGTGGAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATAGATGAAAGCCAGTGGAAGACCATGT
77900965 CTGAGACATGGCATCGGCTTAATATGTGTC
66 CTGAGACATGGCATCGGCTTAATATGTGTC
* * * * * * *
77900995 AGTGTAAGACCATGTCTGGGACATGGGATTGGTACCGATAGATGAGAGCTAGTGTAAGAGCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATAGATGAAAGCCAGTGGAAGACCATGT
*
77901060 CTGGGACATGGCATCGGC
66 CTGAGACATGGCATCGGC
77901078 CTCGATATAC
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
95 74 1.00
ACGTcount: A:0.28, C:0.17, G:0.33, T:0.22
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATAGATGAAAGCCAGTGGAAGACCATGT
CTGAGACATGGCATCGGCTTAATATGTGTC
Found at i:77901170 original size:48 final size:49
Alignment explanation
Indices: 77900900--77901175 Score: 149
Period size: 50 Copynumber: 5.7 Consensus size: 49
77900890 TATGAGAGCT
* * *
77900900 AGTGTAAGAGCATGTCTGGGACATGGCATCGGCAC-CGATAGATGA-AAG-CC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-CTCGAT--AT-ACAAGATC
* * * * ***
77900950 AGTGGAAGACCATGTCTGAGACATGGCATCG-GCT-TA-ATATGTG-TC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATATACAAGATC
* * * ** *
77900995 AGTGTAAGACCATGTCTGGGACATGGGATTGGTA-C-CGATAGATGAGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCA-TCG-ACCTCGATATACAAGATC
* *
77901044 TAGTGTAAGAGCATGTCTGGGACATGGCATCGGCCTCGATATACAAGATTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATATACAAGA-TC
**** * * * ** *
77901095 AGTGTAAGACCATGTCTGGTTTGTGGCATCGACTTTGATGTGTAAG-TG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATATACAAGATC
*
77901143 AGTGTAAGACCATGTCCGGGACATGGCATCGAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC
77901176 ACTTTAACCT
Statistics
Matches: 173, Mismatches: 41, Indels: 26
0.72 0.17 0.11
Matches are distributed among these distances:
44 1 0.01
45 29 0.17
46 2 0.01
47 2 0.01
48 36 0.21
49 4 0.02
50 98 0.57
51 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATATACAAGATC
Found at i:77902470 original size:2 final size:2
Alignment explanation
Indices: 77902463--77902508 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
77902453 TGGAATATTG
77902463 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77902505 AT AT
1 AT AT
77902509 GTGTGTGTGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77902513 original size:2 final size:2
Alignment explanation
Indices: 77902508--77902540 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
77902498 TATATATATA
77902508 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
77902541 TAAGCACCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:77905896 original size:29 final size:28
Alignment explanation
Indices: 77905863--77905918 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
77905853 ACAGGGGTTT
77905863 TCACACGGCCGAACACACGCCCATGTCCC
1 TCACACGGCC-AACACACGCCCATGTCCC
* * * *
77905892 TCACATGGCCTAGACACGCCCGTGTCC
1 TCACACGGCCAACACACGCCCATGTCC
77905919 AAAAACCTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 14 0.61
29 9 0.39
ACGTcount: A:0.21, C:0.45, G:0.20, T:0.14
Consensus pattern (28 bp):
TCACACGGCCAACACACGCCCATGTCCC
Found at i:77910612 original size:50 final size:50
Alignment explanation
Indices: 77910544--77910732 Score: 208
Period size: 50 Copynumber: 3.8 Consensus size: 50
77910534 TGATGCTAGG
*
77910544 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAC-C
1 GATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCACTC
* **
77910594 GATAGATGAGAGCCAGTGTAAGTGCATGTCTGGGACATGGCATCGGC-CTC
1 GATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCACTC
* * * * * *
77910644 GACATACGAGAGTTAGTGTAAGACCATGTCTGGGATATGGCATCG-ACTTT
1 GATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGCAC-TC
* *
77910694 GAT-G-TGAGAGTTAGTGTAAGACCATGTCAGGGACATGGC
1 GATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
77910733 GTTGGCGCCT
Statistics
Matches: 117, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
48 32 0.27
49 3 0.03
50 82 0.70
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (50 bp):
GATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGCACTC
Found at i:77919571 original size:20 final size:20
Alignment explanation
Indices: 77919522--77919571 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
77919512 GCACACGCCT
* *
77919522 GTGTGGCCTCAGACATGCCC
1 GTGTGGCCTGAGACATACCC
*
77919542 GTGTGGCCTGGGACATACCC
1 GTGTGGCCTGAGACATACCC
77919562 GTGTGGCCTG
1 GTGTGGCCTG
77919572 CCCGTGGGGC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.12, C:0.30, G:0.36, T:0.22
Consensus pattern (20 bp):
GTGTGGCCTGAGACATACCC
Found at i:77920533 original size:52 final size:52
Alignment explanation
Indices: 77920425--77920589 Score: 183
Period size: 52 Copynumber: 3.2 Consensus size: 52
77920415 TCTTACACGG
* * *
77920425 ATCACATCACACACGATGCCATATCCCAGATATGATCTTATA--AGAACCACATT
1 ATCACATCACAC-CGATGCCATAGCCCAGATATGGTCTTATACGGGAA-CACA-T
**
77920478 ATCATGTCACACCGATGCCATAGCCCAGATATGGTCTTATACGGGAACACAT
1 ATCACATCACACCGATGCCATAGCCCAGATATGGTCTTATACGGGAACACAT
** * * *
77920530 ATCACATTGCACCGATGCCATAGCCCA-ACTATGGTCATAAACGGGCACACAT
1 ATCACATCACACCGATGCCATAGCCCAGA-TATGGTCTTATACGGGAACACAT
77920582 ATCACATC
1 ATCACATC
77920590 TTTTCCATCG
Statistics
Matches: 96, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
51 1 0.01
52 78 0.81
53 14 0.15
54 3 0.03
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (52 bp):
ATCACATCACACCGATGCCATAGCCCAGATATGGTCTTATACGGGAACACAT
Found at i:77925031 original size:21 final size:21
Alignment explanation
Indices: 77924995--77925045 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
77924985 TTGAGTTTTG
* *
77924995 GGGTTTATAATTTTAAGGTTTA
1 GGGTTT-TAATATTAAGGTTCA
*
77925017 GGGTTTTAATATTAATGTTCA
1 GGGTTTTAATATTAAGGTTCA
*
77925038 TGGTTTTA
1 GGGTTTTA
77925046 GGGGTTAGGC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 19 0.76
22 6 0.24
ACGTcount: A:0.25, C:0.02, G:0.22, T:0.51
Consensus pattern (21 bp):
GGGTTTTAATATTAAGGTTCA
Found at i:77926947 original size:40 final size:39
Alignment explanation
Indices: 77926902--77927109 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 39
77926892 CGGAATACAA
*
77926902 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
77926942 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTCGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
77926982 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
77927022 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
* ** * * *
77927062 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
77927102 CCGGATAT
1 CCGGATAT
77927110 CATTCAATTG
Statistics
Matches: 137, Mismatches: 28, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
39 4 0.03
40 130 0.95
41 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:77927042 original size:80 final size:80
Alignment explanation
Indices: 77926902--77927108 Score: 213
Period size: 80 Copynumber: 2.6 Consensus size: 80
77926892 CGGAATACAA
* *
77926902 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
77926966 GCCTTCGGGTATTCGC
65 GCCTTCGGGTATTCGC
* * * **
77926982 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
* **
77927046 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTCGC
* ** ** * *
77927062 CCGGGTATAATTAC-TAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACAT-GCACGAATGCCTTCGGGTCTTAGCCCGGATA
77927109 TCATTCAATT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
79 4 0.04
80 99 0.94
81 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTCGC
Found at i:77934989 original size:40 final size:39
Alignment explanation
Indices: 77934944--77935151 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
77934934 CGGAATACAA
*
77934944 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
77934984 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
77935024 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
77935064 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
77935104 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
77935144 CCGGATAT
1 CCGGATAT
77935152 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:77935084 original size:80 final size:80
Alignment explanation
Indices: 77934944--77935150 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
77934934 CGGAATACAA
* * *
77934944 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
77935008 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
77935024 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
77935088 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
77935104 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
77935151 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:77936594 original size:29 final size:29
Alignment explanation
Indices: 77936562--77936662 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
77936552 GTGACGAGAT
77936562 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
77936591 TGGCACTAAGTGTGCGTGCTGGAAATAT-
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
77936619 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
77936648 CGGCACT-GGTGTGCG
1 TGGCACTAAGTGTGCG
77936663 AGCTCGAGGG
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
28 31 0.48
29 34 0.52
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:77936659 original size:28 final size:29
Alignment explanation
Indices: 77936562--77936666 Score: 142
Period size: 28 Copynumber: 3.7 Consensus size: 29
77936552 GTGACGAGAT
*
77936562 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
*
77936591 TGGCACTAAGTGTGCGTGCTGGAAATAT-
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
77936619 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
77936648 CGGCACT-GGTGTGCGAGCT
1 TGGCACTAAGTGTGCGAGCT
77936667 CGAGGGTATG
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
28 35 0.51
29 34 0.49
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:77944339 original size:28 final size:29
Alignment explanation
Indices: 77944284--77944384 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
77944274 GTGACGAGAT
77944284 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
77944313 TGGCACTAAGTGTG-GTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
77944341 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
77944370 TGACACTATGTGTGC
1 TGGCACTAAGTGTGC
77944385 AAGCTGAAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
28 27 0.42
29 38 0.58
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:77944385 original size:29 final size:29
Alignment explanation
Indices: 77944284--77944404 Score: 147
Period size: 29 Copynumber: 4.2 Consensus size: 29
77944274 GTGACGAGAT
* *
77944284 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* *
77944313 TGGCACTAAGTGTG-GTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
77944341 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* * *
77944370 TGACACTATGTGTGCAAGCT-GAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
77944398 CGGCACT
1 TGGCACT
77944405 GGGTGTGCGA
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
28 40 0.49
29 42 0.51
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:77944410 original size:28 final size:29
Alignment explanation
Indices: 77944329--77944417 Score: 81
Period size: 29 Copynumber: 3.1 Consensus size: 29
77944319 TAAGTGTGGT
* * * * *
77944329 GCTGGAAATATAAGGCACTAAGTGTGCAT
1 GCTGGAAAAATACGACACTAGGTGTGCAA
* *
77944358 GCTGGAAAAATATGACACTATGTGTGCAA
1 GCTGGAAAAATACGACACTAGGTGTGCAA
* * *
77944387 GCT-GAAAAATACGGCACTGGGTGTGCGA
1 GCTGGAAAAATACGACACTAGGTGTGCAA
77944415 GCT
1 GCT
77944418 CGAAGGGTAT
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 23 0.46
29 27 0.54
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (29 bp):
GCTGGAAAAATACGACACTAGGTGTGCAA
Found at i:77944412 original size:57 final size:57
Alignment explanation
Indices: 77944285--77944404 Score: 152
Period size: 57 Copynumber: 2.1 Consensus size: 57
77944275 TGACGAGATT
* * * ** *
77944285 GGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGAAGCTGGAAAAATAA
* *
77944342 GGCACTAAGTGTGCATGCTGGAAAAATATGACACTATGTGTGCAAGCT-GAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTG-AAGCTGGAAAAATAA
77944399 GGCACT
1 GGCACT
77944405 GGGTGTGCGA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
57 51 0.94
58 3 0.06
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (57 bp):
GGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGAAGCTGGAAAAATAA
Found at i:77956197 original size:40 final size:40
Alignment explanation
Indices: 77956128--77956298 Score: 249
Period size: 40 Copynumber: 4.3 Consensus size: 40
77956118 ATTTGGATTG
77956128 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
77956167 ATATCGGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
77956207 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
77956247 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
*
77956287 ATATCC-GGCTAA
1 ATAACCGGGCTAA
77956299 ACCTCGAAGG
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 19 0.16
40 99 0.84
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:77958901 original size:25 final size:26
Alignment explanation
Indices: 77958857--77958908 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
77958847 TCATTTAAGT
77958857 GGTTAATTCAAAAAAAGGACTTAATC
1 GGTTAATTCAAAAAAAGGACTTAATC
77958883 GGTTAATTC-AAAAAAGGACTTAATC
1 GGTTAATTCAAAAAAAGGACTTAATC
77958908 G
1 G
77958909 CGTAAAATGC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.44, C:0.12, G:0.17, T:0.27
Consensus pattern (26 bp):
GGTTAATTCAAAAAAAGGACTTAATC
Found at i:77958921 original size:27 final size:25
Alignment explanation
Indices: 77958867--77958922 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
77958857 GGTTAATTCA
* *
77958867 AAAAAAGGACTTAATCGGTTAATTC
1 AAAAAAGGACTTAATCGGTAAATGC
77958892 AAAAAAGGACTTAATCGCGTAAAATGC
1 AAAAAAGGACTTAATCG-GT-AAATGC
77958919 AAAA
1 AAAA
77958923 GTAGCATGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 17 0.63
26 2 0.07
27 8 0.30
ACGTcount: A:0.50, C:0.12, G:0.16, T:0.21
Consensus pattern (25 bp):
AAAAAAGGACTTAATCGGTAAATGC
Found at i:77959965 original size:40 final size:42
Alignment explanation
Indices: 77959879--77959975 Score: 121
Period size: 40 Copynumber: 2.4 Consensus size: 42
77959869 CGAATATGTT
* *
77959879 TGGCACTTAGTGTACG-TTTCGAGATAGCTTCGGCTATATAG
1 TGGCACTTAGTGTGCGAATTCGAGATAGCTTCGGCTATATAG
* *
77959920 -AGCACTTAGTGTGCGAATTGGA-ATAGCTTCGGCTATAT-G
1 TGGCACTTAGTGTGCGAATTCGAGATAGCTTCGGCTATATAG
*
77959959 TGGCACTAAGTGTGCGA
1 TGGCACTTAGTGTGCGA
77959976 TACCAAGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
39 1 0.02
40 43 0.90
41 4 0.08
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (42 bp):
TGGCACTTAGTGTGCGAATTCGAGATAGCTTCGGCTATATAG
Found at i:77963881 original size:19 final size:19
Alignment explanation
Indices: 77963857--77963894 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
77963847 GACTTCGTTT
77963857 TCCTGCATCAAAACACAGC
1 TCCTGCATCAAAACACAGC
77963876 TCCTGCATCAAAACACAGC
1 TCCTGCATCAAAACACAGC
77963895 CCAGACCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.37, G:0.11, T:0.16
Consensus pattern (19 bp):
TCCTGCATCAAAACACAGC
Found at i:77964883 original size:19 final size:19
Alignment explanation
Indices: 77964861--77964949 Score: 56
Period size: 19 Copynumber: 4.3 Consensus size: 19
77964851 TAATAATAAT
77964861 ATAAAATAATAATATGTAC
1 ATAAAATAATAATATGTAC
*
77964880 ATAAAATACATATATATATATATGC
1 ATAAAAT--A-ATA-ATATGTA--C
*
77964905 ATATAATAA-AAGTATGTA-
1 ATAAAATAATAA-TATGTAC
*
77964923 ATAATAATAATAATATCTAC
1 ATAA-AATAATAATATGTAC
77964943 AATAAAA
1 -ATAAAA
77964950 GAAAATATTA
Statistics
Matches: 54, Mismatches: 5, Indels: 21
0.68 0.06 0.26
Matches are distributed among these distances:
18 3 0.06
19 17 0.31
20 5 0.09
21 11 0.20
22 4 0.07
23 7 0.13
25 7 0.13
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (19 bp):
ATAAAATAATAATATGTAC
Found at i:77965772 original size:26 final size:26
Alignment explanation
Indices: 77965743--77965801 Score: 84
Period size: 25 Copynumber: 2.3 Consensus size: 26
77965733 GGTTTCTTGG
*
77965743 TTTTTTTGGGGGGTTAGG-TTTTTCT
1 TTTTTTTTGGGGGTTAGGTTTTTTCT
**
77965768 TTTTTTTTTTGGGTTAGGTTTTTTCT
1 TTTTTTTTGGGGGTTAGGTTTTTTCT
77965794 TTTTTTTT
1 TTTTTTTT
77965802 TTTGGTTAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 15 0.50
26 15 0.50
ACGTcount: A:0.03, C:0.03, G:0.22, T:0.71
Consensus pattern (26 bp):
TTTTTTTTGGGGGTTAGGTTTTTTCT
Found at i:77965818 original size:27 final size:26
Alignment explanation
Indices: 77965753--77965817 Score: 105
Period size: 26 Copynumber: 2.5 Consensus size: 26
77965743 TTTTTTTGGG
77965753 GGGTTAGG-TTTTTCTTTTTTTTTTT
1 GGGTTAGGTTTTTTCTTTTTTTTTTT
77965778 GGGTTAGGTTTTTTCTTTTTTTTTTT
1 GGGTTAGGTTTTTTCTTTTTTTTTTT
* *
77965804 TGGTTAGATTTTTT
1 GGGTTAGGTTTTTT
77965818 TTGGGGAGGG
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
25 8 0.22
26 29 0.78
ACGTcount: A:0.06, C:0.03, G:0.20, T:0.71
Consensus pattern (26 bp):
GGGTTAGGTTTTTTCTTTTTTTTTTT
Found at i:77966583 original size:88 final size:83
Alignment explanation
Indices: 77966487--77967459 Score: 363
Period size: 88 Copynumber: 11.8 Consensus size: 83
77966477 AAAATAGAAA
* *
77966487 TTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
1 TTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
*
77966552 AAACTTAACTTGAAAAGCAGATT
65 AAA---AAC-TGAAAAACAGATT
* * ** *
77966575 TTGAAAATACCTCGATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
1 TTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* *
77966638 GAAAAACAGAAATTAAAAGA--
64 GAAAAACTGAAA--AACAGATT
* * * ** *** *
77966658 CT-CAACTCAACTCTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTT
1 TTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-TT
**
77966721 TTTTGAAAAA---AAAAACAGAAA
60 TTTTGAAAAACTGAAAAACAGATT
* *
77966742 TTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTG
1 TTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
*
77966806 AAAACAGAATTTGAAAAACAGATT
65 --AA-A-AA-CTGAAAAACAGATT
* * * * *
77966830 TTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTT
1 TTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
*
77966895 GAAAAA-T---ATA-A-ATT
64 GAAAAACTGAAAAACAGATT
*** *** * *
77966909 GAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 TTGAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
**
77966973 G--AAA--G----ACAGAAA
64 GAAAAACTGAAAAACAGATT
* ** * * *
77966985 TTGAAAATAGCTCAGTGCGTGAGCCAAGGCTCAAGTCACCTCTCGAAATATAAGTTGATTTTTTG
1 TTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
*
77967050 -AAAAC----AGA-A-A--
65 AAAAACTGAAAAACAGATT
* * ** ** *
77967060 TTGAAAATACCTC-AACGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTG
1 TTGAAAATACCTCGCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
* ** **
77967122 AAACAGAAATTGAAAAATGGAAA
65 --A-A-AAACTGAAAAACAGATT
*** * **
77967145 TTGAAAATACCTCGGTGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG
1 TTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
* *
77967209 AAAAA-T-ATAAATTAAAG-TAA
65 AAAAACTGA-AAA--ACAGAT-T
*** *** * *
77967229 AAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 TTGAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
* **
77967293 TGAAAGACAGAAATTGAAAAACAGAAA
63 T----GA-A-AAACTGAAAAACAGATT
** * **
77967320 TTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-
1 TTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
* **
77967384 ------TGAAAGACAGAAA
65 AAAAACTGAAAAACAGATT
* * * *
77967397 TTG-AAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGTCGATTTTTT
1 TTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
77967460 TTGAAAGGCA
Statistics
Matches: 701, Mismatches: 112, Indels: 156
0.72 0.12 0.16
Matches are distributed among these distances:
72 6 0.01
73 31 0.04
74 1 0.00
75 15 0.02
76 109 0.16
77 22 0.03
78 8 0.01
79 48 0.07
80 9 0.01
81 5 0.01
82 18 0.03
83 46 0.07
84 98 0.14
85 27 0.04
86 7 0.01
87 64 0.09
88 110 0.16
90 15 0.02
91 54 0.08
92 3 0.00
93 4 0.01
94 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (83 bp):
TTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
AAAACTGAAAAACAGATT
Found at i:77966680 original size:30 final size:30
Alignment explanation
Indices: 77966644--77966705 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
77966634 TTTTGAAAAA
77966644 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
77966674 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
77966704 CA
1 CA
77966706 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:77966825 original size:14 final size:14
Alignment explanation
Indices: 77966802--77966836 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
77966792 TGAGTTGATT
77966802 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
77966815 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
77966829 TTTGAAAA
1 TTTGAAAA
77966837 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:77967026 original size:76 final size:76
Alignment explanation
Indices: 77966856--77967137 Score: 317
Period size: 76 Copynumber: 3.7 Consensus size: 76
77966846 ATGTGACCCG
* * * *
77966856 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATACCT
* *
77966921 CAGTGTGTGATCTGA
62 CAGTGCGTGATCTCA
*
77966936 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATAGCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA-ACAGAAATTGAAAATACCTCAG
*
77967000 TGCGTGAGC-CA
65 TGCGTGATCTCA
* * *
77967011 AGGCTCAAGTCACCTCTCGAAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA--
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGT
* **
77967074 ACGTG-TCTTG
66 GCGTGATCTCA
** *
77967084 AGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTG-AAACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAA
77967138 ATGGAAATTG
Statistics
Matches: 177, Mismatches: 22, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
71 16 0.09
72 6 0.03
73 31 0.18
75 22 0.12
76 55 0.31
77 3 0.02
78 15 0.08
79 28 0.16
80 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (76 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGT
GCGTGATCTCA
Found at i:77967311 original size:14 final size:14
Alignment explanation
Indices: 77967292--77967326 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
77967282 GTTGATTTTT
*
77967292 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
77967306 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
77967320 TTGAAAA
1 TTGAAAA
77967327 TACCTCGGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:77967353 original size:91 final size:89
Alignment explanation
Indices: 77967050--77967402 Score: 447
Period size: 91 Copynumber: 4.0 Consensus size: 89
77967040 TGATTTTTTG
* * **
77967050 AAAACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCATTTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
77967113 TGAATTTTG-AA-ACAGAAATTGA
66 TGATTTTTGAAAGACAGAAATTGA
** * *
77967135 AAAATGGAAATTGAAAATACCTCGGTGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
77967200 TGATTTTTGAAAAATATAAATT-A
66 TGATTTTTGAAAGACAGAAATTGA
* * *
77967223 AAGTA-A-AAA---AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAG
1 AA-AACAGAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAG
77967283 TTGATTTTTTTGAAAGACAGAAATTGA
65 TTGA--TTTTTGAAAGACAGAAATTGA
*
77967310 AAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGT
77967375 TGATTTTTTTGAAAGACAGAAATTGA
66 TGA--TTTTTGAAAGACAGAAATTGA
77967401 AA
1 AA
77967403 TAGCTCAGCG
Statistics
Matches: 233, Mismatches: 22, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
84 53 0.23
85 25 0.11
86 18 0.08
87 44 0.19
88 8 0.03
89 8 0.03
91 77 0.33
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (89 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTGAAAGACAGAAATTGA
Found at i:77967435 original size:76 final size:77
Alignment explanation
Indices: 77967306--77967479 Score: 242
Period size: 76 Copynumber: 2.3 Consensus size: 77
77967296 AAGACAGAAA
* * * * **
77967306 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTG-AAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
*
77967371 GAGTTGA-TTTTT
65 GAGTCGATTTTTT
* *
77967383 TTGAAAGACAGAAATTGAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTTGCAATATG
1 TTGAAAGACAGAAATTGAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
77967448 AGTCGATTTTTT
66 AGTCGATTTTTT
*
77967460 TTGAAAGGCAGAAATTGAAA
1 TTGAAAGACAGAAATTGAAA
77967480 AACGGAAATT
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
76 46 0.53
77 40 0.47
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (77 bp):
TTGAAAGACAGAAATTGAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
AGTCGATTTTTT
Found at i:77967478 original size:91 final size:90
Alignment explanation
Indices: 77967383--77967569 Score: 209
Period size: 92 Copynumber: 2.1 Consensus size: 90
77967373 GTTGATTTTT
* * * *
77967383 TTGAAAGACAGAAATTG-AAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTTGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGA-CCTAAGGCTCAACTCACCGCTCGCAATA
* *
77967446 TGAGTCGATTTTTTTTGA-AAGGCAGAAA
65 CGAGTCGA-CTTTTTTGACAA--CAGAAA
* * * * *
77967474 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCGCTCGCAATAC
*
77967539 GAGTTGACTTTTTTGACAACAGAAA
66 GAGTCGACTTTTTTGACAACAGAAA
77967564 TTGAAA
1 TTGAAA
77967570 TTACCTCAGC
Statistics
Matches: 81, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
90 12 0.15
91 25 0.31
92 44 0.54
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (90 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCGCTCGCAATAC
GAGTCGACTTTTTTGACAACAGAAA
Found at i:77967618 original size:74 final size:76
Alignment explanation
Indices: 77967484--77967646 Score: 206
Period size: 76 Copynumber: 2.1 Consensus size: 76
77967474 TTGAAAAACG
* * * *
77967484 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGA-CT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTAAGGCTCAACTCACCGCTCACAATACGAGTTGATCT
77967548 TTTTTGACAA-CA
65 TTTTTGA-AAGCA
* * * *
77967560 GAAATTGAAATTACCTCAGCGTGT-CCTAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTAAGGCTCAACTCACCGCTCACAATACGAGTTGATCTT
77967624 TTTTGAAAGGCA
66 TTTTGAAA-GCA
77967636 GAAATTGAAAA
1 GAAATTGAAAA
77967647 ACGAAAATTG
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
74 33 0.44
75 8 0.11
76 34 0.45
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (76 bp):
GAAATTGAAAATACCTCAGCGTGTACCTAAGGCTCAACTCACCGCTCACAATACGAGTTGATCTT
TTTTGAAAGCA
Found at i:77967728 original size:90 final size:89
Alignment explanation
Indices: 77967561--77967735 Score: 237
Period size: 90 Copynumber: 1.9 Consensus size: 89
77967551 TTGACAACAG
* * *
77967561 AAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCACTCACAATACGAGTTGATTTTTT
77967626 TTGAAAGGCAGAAATTGAAAAACGA
66 TTGAAA-GCAGAAATTGAAAAACGA
* * * *
77967651 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGA-TTT
1 AAATTGAAAATACCTCAGCGTGT--CCTAAGGCTCAACTCACCACTCACAATACGAGTTGATTTT
77967715 TTTTGACAA-CAGAAATTGAAA
64 TTTTGA-AAGCAGAAATTGAAA
77967736 TTACCTCAGC
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
90 33 0.44
91 9 0.12
92 33 0.44
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.27
Consensus pattern (89 bp):
AAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCACTCACAATACGAGTTGATTTTTT
TTGAAAGCAGAAATTGAAAAACGA
Found at i:77967793 original size:76 final size:75
Alignment explanation
Indices: 77967651--77967977 Score: 234
Period size: 74 Copynumber: 4.1 Consensus size: 75
77967641 TGAAAAACGA
* *
77967651 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
77967716 TTTGACAACAG
65 TTTGACAACAG
* * *
77967727 AAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
*
77967791 TTTA-AAGGCAG
66 TTGACAA--CAG
** *** * *
77967802 AAATTGAAAA-A-CGAAAATTGAAAATACCTG-GGCGTGTGACCTGAGGCTTAACTCGCCACTCG
1 AAATTGAAAATACCTCAGCGTG----TACCTGAGGC---T---C--A-AC-T--C-A-CCACTCG
*
77967864 CAATACGAGTTGACTTTTTTGACAACAG
48 CAATACGAGTTGATTTTTTTGACAACAG
* * * *
77967892 AAATTGAAATTACCTTAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGA-TTTT
*
77967956 TTTGAAAGACAG
65 TTTGACA-ACAG
77967968 AAATTGAAAA
1 AAATTGAAAA
77967978 ACGAAAATTG
Statistics
Matches: 193, Mismatches: 31, Indels: 54
0.69 0.11 0.19
Matches are distributed among these distances:
73 6 0.03
74 60 0.31
75 21 0.11
76 35 0.18
77 4 0.02
78 5 0.03
79 1 0.01
80 2 0.01
82 1 0.01
83 1 0.01
85 2 0.01
86 1 0.01
87 5 0.03
88 4 0.02
89 1 0.01
90 12 0.06
91 26 0.13
92 6 0.03
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (75 bp):
AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
TTGACAACAG
Found at i:77967882 original size:91 final size:88
Alignment explanation
Indices: 77967727--77967900 Score: 224
Period size: 91 Copynumber: 1.9 Consensus size: 88
77967717 TTGACAACAG
* * * *
77967727 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGACTTTTT
*
77967792 TTA-AAGGCAGAAATTGAAAAACGA
66 TGACAA--CAGAAATTGAAAAACGA
** * *
77967816 AAATTGAAAATACCTGGGCGTGTGACCTGAGGCTTAACTCGCCACTCGCAATACGAGTTGACTTT
1 AAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCACTCGCAATACGAGTTGACTTT
77967881 TTTGACAACAGAAATTGAAA
64 TTTGACAACAGAAATTGAAA
77967901 TTACCTTAGC
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
89 20 0.27
90 12 0.16
91 39 0.53
92 2 0.03
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (88 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGACTTTTT
TGACAACAGAAATTGAAAAACGA
Found at i:77967884 original size:165 final size:166
Alignment explanation
Indices: 77967011--77968210 Score: 1430
Period size: 166 Copynumber: 7.1 Consensus size: 166
77967001 GCGTGAGCCA
* * * ** *
77967011 AGGCTCAAGTCACCTCTCGAAATATAAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCAA
1 AGGCTCAACTCGCCTCTCGCAATACGAGTTGACTTTTTTGAAAACAGAAATTGAAAATACCTCAG
* ** *
77967075 CGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA---ATTTTGAAA--CAGAAATTGA
66 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGA
* * * *
77967135 AAAATGGAAATTGAAAATACCTCGGTGTGTGATCTG
131 AAAACGAAAATTGAAAATACCTCGGCGTGTGACCTG
* * * *
77967171 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAATATAAATTAAAGTAAAAAAA
1 AGGCTCAACTCGCCTCTCGCAATACGAGTTGACTTTTTTG-AAAACAGAAATT---G------AA
* * *
77967234 AATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAA
56 AATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAA
* *
77967298 GACAGAAATTGAAAAAC-AGAAATTGAAAATACCTCGGCGTGTGATCTG
119 GGCAGAAATTGAAAAACGA-AAATTGAAAATACCTCGGCGTGTGACCTG
* * * *
77967346 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG-AAATAGCTCA
1 AGGCTCAACTCGCCTCTCGCAATACGAGTTGACTTTTTTGAAA-ACAGAAATTGAAAATACCTCA
* * * *
77967410 GCGCGTGAGCC-AAGGCTCAACTCACCTCTTGCAATATGAGTCGATTTTTTTTGAAAGGCAGAAA
65 --GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAA
*
77967474 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTG
127 TTGAAAAACGAAAATTGAAAATACCTCGGCGTGTGACCTG
* * *
77967514 AGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATTACCTCAG
1 AGGCTCAACTCGCCTCTCGCAATACGAGTTGACTTTTTTGAAAACAGAAATTGAAAATACCTCAG
* *
77967579 CGTGTCCTAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGA
66 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGA
77967644 AAAACGAAAATTGAAAATACCTCGGCGTGTGACCTG
131 AAAACGAAAATTGAAAATACCTCGGCGTGTGACCTG
* * * *
77967680 AGGCTCAACTCGCCACTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAG
1 AGGCTCAACTCGCCTCTCGCAATACGAGTTGACTTTTTTGAAAACAGAAATTGAAAATACCTCAG
77967745 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT-AAAGGCAGAAATTGA
66 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGA
*
77967809 AAAACGAAAATTGAAAATACCTGGGCGTGTGACCTG
131 AAAACGAAAATTGAAAATACCTCGGCGTGTGACCTG
* * * * *
77967845 AGGCTTAACTCGCCACTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATTACCTTAG
1 AGGCTCAACTCGCCTCTCGCAATACGAGTTGACTTTTTTGAAAACAGAAATTGAAAATACCTCAG
*
77967910 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGA
66 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGA
77967975 AAAACGAAAATTGAAAATACCTCGGCGTGTGACCTG
131 AAAACGAAAATTGAAAATACCTCGGCGTGTGACCTG
77968011 AGGCTCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAATGAAAACAGAAAT
1 AGGCTCAACTCGCCTCTCGCAATACGAGTTGA--CTTT--------T--T--TGAAAACAGAAAT
* * * * *
77968076 TGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA--TTCTTTCA
52 TGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGA
** * * *
77968139 AAAACATAATAATG-AAGAC-AGAAATTGAAAATACCTCGGC--GTGACCTG
117 AAGGCAGAA-ATTGAAAAACGA-AAATTGAAAATACCTCGGCGTGTGACCTG
* *
77968187 AGGCTCAACTCACCTCTCGTAATA
1 AGGCTCAACTCGCCTCTCGCAATA
77968211 TGAGCTAATT
Statistics
Matches: 929, Mismatches: 67, Indels: 72
0.87 0.06 0.07
Matches are distributed among these distances:
159 6 0.01
160 39 0.04
163 1 0.00
165 163 0.18
166 283 0.30
167 48 0.05
168 106 0.11
169 19 0.02
171 31 0.03
173 8 0.01
174 1 0.00
175 74 0.08
176 34 0.04
177 14 0.02
178 37 0.04
179 3 0.00
180 62 0.07
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (166 bp):
AGGCTCAACTCGCCTCTCGCAATACGAGTTGACTTTTTTGAAAACAGAAATTGAAAATACCTCAG
CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGA
AAAACGAAAATTGAAAATACCTCGGCGTGTGACCTG
Found at i:77967888 original size:331 final size:331
Alignment explanation
Indices: 77967011--77968197 Score: 1479
Period size: 331 Copynumber: 3.5 Consensus size: 331
77967001 GCGTGAGCCA
* * * ** *
77967011 AGGCTCAAGTCACCTCTCGAAATATAAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCAA
1 AGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAG
* ** * *
77967075 CGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAA--CAGAAATTGAA
66 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAGGCAGAAATTGAA
* * * * * *
77967136 AAATGGAAATTGAAAATACCTCGGTGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
131 AAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTT
* * * * * *
77967201 GA--TTTTTGAAAAATATAAATTAAAGTAAAAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAA
196 GACTTTTTTG-ACAACAGAAATT---G------AAATTACCTCAGCGTGT--CCT-AAGGCTCAA
77967263 CTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAGAAATTGAAAAAC-AGAAATTGAAA
248 CTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAAACGA-AAATTGAAA
*
77967326 ATACCTCGGCGTGTGATCTG
312 ATACCTCGGCGTGTGACCTG
* * *
77967346 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG-AAATAGCTCA
1 AGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCA
* * * *
77967410 GCGCGTGAGCC-AAGGCTCAACTCACCTCTTGCAATATGAGTCGATTTTTTTTGAAAGGCAGAAA
65 --GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT-AAAGGCAGAAA
*
77967474 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATAC
126 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATAC
77967539 GAGTTGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTC
191 GAGTTGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTC
* *
77967604 TCACAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTGAAAATACCTCGG
256 TCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAAACGAAAATTGAAAATACCTCGG
77967669 CGTGTGACCTG
321 CGTGTGACCTG
* * *
77967680 AGGCTCAACTCGCCACTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAG
1 AGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAG
77967745 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAGGCAGAAATTGAA
66 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAGGCAGAAATTGAA
* * *
77967810 AAACGAAAATTGAAAATACCTGGGCGTGTGACCTGAGGCTTAACTCGCCACTCGCAATACGAGTT
131 AAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTT
* *
77967875 GACTTTTTTGACAACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
196 GACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCA
77967940 ATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAAACGAAAATTGAAAATACCTCGGCGTGT
261 ATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAAACGAAAATTGAAAATACCTCGGCGTGT
77968005 GACCTG
326 GACCTG
77968011 AGGCTCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAATGAAAACAGAAAT
1 AGGCTCAACTCGCCTCTCGCAATACGAGTTGA-T-TTT--------T--T--TGAAAACAGAAAT
* * * * *
77968076 TGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTCTTTCAA
52 TGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAA
** * * * *
77968140 AAACATAATAATG-AAGACAGAAATTGAAAATACCTCGGC--GTGACCTGAGGCTCAACTC
117 AGGCAGAA-ATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTC
77968198 ACCTCTCGTA
Statistics
Matches: 756, Mismatches: 64, Indels: 57
0.86 0.07 0.06
Matches are distributed among these distances:
331 242 0.32
332 46 0.06
333 44 0.06
334 102 0.13
335 45 0.06
336 19 0.03
337 10 0.01
338 32 0.04
339 1 0.00
340 4 0.01
341 5 0.01
342 18 0.02
343 73 0.10
344 43 0.06
345 72 0.10
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (331 bp):
AGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAG
CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAGGCAGAAATTGAA
AAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTT
GACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAAACGAAAATTGAAAATACCTCGGCGTGT
GACCTG
Found at i:77968118 original size:88 final size:88
Alignment explanation
Indices: 77967887--77968214 Score: 462
Period size: 88 Copynumber: 3.7 Consensus size: 88
77967877 CTTTTTTGAC
* ** *
77967887 AACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* * * * *
77967952 TTTTTTTGAAAGACAGAA-ATTGAA
65 -TTCTTTCAAAAACATAATAATGAA
* *
77967976 AA-ACGAAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGT
1 AACA-G-AAATTGAAAATACCTCGGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
77968040 TGATTCTTTCAAAAACATAATAATGAA
62 TGATTCTTTCAAAAACATAATAATGAA
*
77968067 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
77968132 TCTTTCAAAAACATAATAATGAA
66 TCTTTCAAAAACATAATAATGAA
* *
77968155 GACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGTAATATGAG
1 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
77968215 CTAATTTTGA
Statistics
Matches: 217, Mismatches: 16, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
88 120 0.55
89 3 0.01
90 48 0.22
91 8 0.04
92 38 0.18
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (88 bp):
AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TCTTTCAAAAACATAATAATGAA
Found at i:77968120 original size:180 final size:176
Alignment explanation
Indices: 77967887--77968210 Score: 463
Period size: 180 Copynumber: 1.8 Consensus size: 176
77967877 CTTTTTTGAC
* * * *
77967887 AACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-
* * * *
77967952 TTTTTTTGAAAGACAGAA-ATTGAAAA-ACGAAAATTGAAAATACCTCGGCGTGTGACCTGAGGC
65 -TTCTTTCAAAAACAGAATAATGAAAACA-G-AAATTGAAAATACCTCGGC--GTGACCTGAGGC
*
77968015 TCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAATGAA
125 TCAACTCACCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAATGAA
*
77968067 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
* *
77968132 TCTTTCAAAAACATAATAATGAAGACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACT
66 TCTTTCAAAAACAGAATAATGAAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACT
*
77968197 CACCTCTCGTAATA
131 CACCTCTCGCAATA
77968211 TGAGCTAATT
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
176 30 0.23
178 32 0.25
179 7 0.05
180 60 0.47
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (176 bp):
AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TCTTTCAAAAACAGAATAATGAAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACT
CACCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAATGAA
Found at i:77968395 original size:72 final size:72
Alignment explanation
Indices: 77968245--77968439 Score: 250
Period size: 72 Copynumber: 2.7 Consensus size: 72
77968235 ATTAAAAGGT
* * * * * * * *
77968245 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAGATTACCTCATCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGA-TATTGAAAAACAAAAATTGAAAATACCTCAGCGTGC
*
77968310 CCTGAGGC
65 CCCGAGGC
*
77968318 TCAACTCACCTCTCGCAATATGAGTTGAAATT-AAAACACAAAAATTGAAAATACCTCAGCGTGC
1 TCAACTCACCTCTCGCAATATGAGTTGATATTGAAAA-ACAAAAATTGAAAATACCTCAGCGTGC
77968382 CCCGAGGC
65 CCCGAGGC
* *
77968390 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATT-AAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATATTGAAAAACAAAAATTGAAAA
77968440 GGCTTAACTC
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
71 7 0.07
72 69 0.64
73 31 0.29
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (72 bp):
TCAACTCACCTCTCGCAATATGAGTTGATATTGAAAAACAAAAATTGAAAATACCTCAGCGTGCC
CCGAGGC
Found at i:77975672 original size:29 final size:27
Alignment explanation
Indices: 77975638--77975740 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
77975628 TACTCAATCA
*
77975638 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
77975667 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
77975696 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
77975725 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
77975741 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:77981845 original size:29 final size:29
Alignment explanation
Indices: 77981790--77981846 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
77981780 TAAAATAATG
*
77981790 ATATGTACAAAAAATATATATATATATAC
1 ATATGTACAAAAAATATACATATATATAC
*
77981819 ATATGTACATAAAATATACACTA-ATATA
1 ATATGTACAAAAAATATACA-TATATATA
77981847 ATAATAGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 23 0.92
30 2 0.08
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (29 bp):
ATATGTACAAAAAATATACATATATATAC
Found at i:77982532 original size:21 final size:21
Alignment explanation
Indices: 77982516--77982562 Score: 80
Period size: 19 Copynumber: 2.3 Consensus size: 21
77982506 TAGGTTTTTC
77982516 TTTTTTTTTTTGGGGTTAGGT
1 TTTTTTTTTTTGGGGTTAGGT
77982537 TTTTTTTTTTT--GGTTAGGT
1 TTTTTTTTTTTGGGGTTAGGT
77982556 TTTTTTT
1 TTTTTTT
77982563 GGGGAGGGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 15 0.58
21 11 0.42
ACGTcount: A:0.04, C:0.00, G:0.21, T:0.74
Consensus pattern (21 bp):
TTTTTTTTTTTGGGGTTAGGT
Found at i:77986526 original size:43 final size:41
Alignment explanation
Indices: 77986449--77986602 Score: 166
Period size: 43 Copynumber: 3.6 Consensus size: 41
77986439 ATTCCATATC
* * * *
77986449 CCAGATATGGTCTTACACGTTATCACATATCGATGCCAATGG
1 CCAGACATGGTCTTACACATAATCA-ATAACGATGCCAATGG
*
77986491 CCTAGACATGGTCTTACACAAAATCATATAACGATGCCAATGTG
1 CC-AGACATGGTCTTACACATAATCA-ATAACGATGCCAATG-G
* * *
77986535 CCAGACATGGTCTTACACTTAATCGCAAT-ATGATGCCAATGCC
1 CCAGACATGGTCTTACACATAAT--CAATAACGATGCCAATG-G
77986578 CCAGACATGGTCTTACACATAATCA
1 CCAGACATGGTCTTACACATAATCA
77986603 CGTCTCGTTA
Statistics
Matches: 96, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 85 0.89
44 5 0.05
45 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.26
Consensus pattern (41 bp):
CCAGACATGGTCTTACACATAATCAATAACGATGCCAATGG
Found at i:77996134 original size:25 final size:25
Alignment explanation
Indices: 77996100--77996151 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
77996090 TAATTACAGG
*
77996100 TATGTATACTAAACTTAGTATGTGA
1 TATGCATACTAAACTTAGTATGTGA
77996125 TATGCATACTAAACTTAGTATGTGA
1 TATGCATACTAAACTTAGTATGTGA
77996150 TA
1 TA
77996152 AGATGTAGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (25 bp):
TATGCATACTAAACTTAGTATGTGA
Found at i:77997615 original size:20 final size:20
Alignment explanation
Indices: 77997571--77997617 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
77997561 CTTGTATGAG
* *
77997571 ATTGCACTTTGGTGCCTCTG
1 ATTGCACTTCGGTGCCTCTA
*
77997591 TTTGCACTTCGGTGCCTCTA
1 ATTGCACTTCGGTGCCTCTA
77997611 ATTGCAC
1 ATTGCAC
77997618 AATTTTGCCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.13, C:0.28, G:0.21, T:0.38
Consensus pattern (20 bp):
ATTGCACTTCGGTGCCTCTA
Found at i:78003896 original size:31 final size:31
Alignment explanation
Indices: 78003861--78003924 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
78003851 CCTTTTCATG
78003861 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
78003892 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
78003923 TT
1 TT
78003925 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:78004167 original size:24 final size:24
Alignment explanation
Indices: 78004116--78004257 Score: 191
Period size: 24 Copynumber: 6.0 Consensus size: 24
78004106 GCTTTATCAT
*
78004116 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
78004141 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
*
78004165 ATAACTGGGACATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
78004188 ATAACTGGGGCATAAG-CCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
78004211 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
78004235 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
78004258 TCACTTCCTC
Statistics
Matches: 106, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
22 6 0.06
23 31 0.29
24 57 0.54
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:78004230 original size:70 final size:72
Alignment explanation
Indices: 78004115--78004257 Score: 211
Period size: 70 Copynumber: 2.0 Consensus size: 72
78004105 TGCTTTATCA
*
78004115 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGACATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGACATAA
78004180 GCCCTTT
66 GCCCTTT
* ** *
78004187 TATAACTGG-GGCATAAGCCT-TTTT-ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGACATA
78004249 AGCCCTTT
65 AGCCCTTT
78004257 T
1 T
78004258 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
70 43 0.66
71 8 0.12
72 14 0.22
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGACATAA
GCCCTTT
Found at i:78004332 original size:20 final size:20
Alignment explanation
Indices: 78004307--78004367 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
78004297 TTATGATTAC
78004307 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
78004327 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
78004347 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
78004367 A
1 A
78004368 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:78004442 original size:25 final size:25
Alignment explanation
Indices: 78004410--78004457 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
78004400 ATACATAAAC
* * *
78004410 CCTAGGGGTATAATGGTCATTTTTT
1 CCTAGGGGCAAAACGGTCATTTTTT
78004435 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
78004458 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTT
Found at i:78010977 original size:19 final size:19
Alignment explanation
Indices: 78010953--78010989 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
78010943 ACTAGTTCAG
78010953 CTTAGTCCACTTGCTTCGA
1 CTTAGTCCACTTGCTTCGA
78010972 CTTAGTCCACTTGCTTCG
1 CTTAGTCCACTTGCTTCG
78010990 CTTTCCCCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.14, C:0.32, G:0.16, T:0.38
Consensus pattern (19 bp):
CTTAGTCCACTTGCTTCGA
Found at i:78014951 original size:42 final size:42
Alignment explanation
Indices: 78014828--78015027 Score: 258
Period size: 42 Copynumber: 4.7 Consensus size: 42
78014818 TACCAATCCA
* * * * *
78014828 ATGCCATATCCAAGATATGGTCTTACATG-GGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAG-TATCATATCG
* * * * * *
78014870 ATGCCAATAGCCTAGCTATGGTTTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAGTATCATATCG
*
78014913 ATGCCATATCCCAGATATGATCTTACACGTAGTATCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTATCATATCG
*
78014955 ATGCCATATCCCAGATATGATCTTACACGTAGTATCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTATCATATCG
78014997 ATGCCATATCCCAGATATGGTCTTACACGTA
1 ATGCCATATCCCAGATATGGTCTTACACGTA
78015028 ATCTCAGTAA
Statistics
Matches: 141, Mismatches: 15, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
42 107 0.76
43 33 0.23
44 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAGTATCATATCG
Found at i:78025377 original size:40 final size:39
Alignment explanation
Indices: 78025320--78025405 Score: 111
Period size: 40 Copynumber: 2.2 Consensus size: 39
78025310 GTCCAACCAA
* * *
78025320 ACACACC-ATATGTGGATAAAATTGACCCACCCATCCCT
1 ACACACCAATATGGGGATAAAATCGACCCACCCAACCCT
*
78025358 ACACACCAAATATGGGGATAAAATCGACCCATCCAACCCT
1 ACACACC-AATATGGGGATAAAATCGACCCACCCAACCCT
*
78025398 AAACACCA
1 ACACACCA
78025406 TAAAGTACCG
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
38 7 0.17
39 1 0.02
40 33 0.80
ACGTcount: A:0.40, C:0.34, G:0.10, T:0.16
Consensus pattern (39 bp):
ACACACCAATATGGGGATAAAATCGACCCACCCAACCCT
Found at i:78031481 original size:40 final size:40
Alignment explanation
Indices: 78031435--78031511 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
78031425 CCAACACACC
*
78031435 ATATGGGGATAAAATCGACCCACCCATCCCTACACACTAA
1 ATATGGGGATAAAATCGACCCACCCAACCCTACACACTAA
* *
78031475 ATATGGGGATAAAATCTACCCATCCAACCCTACACAC
1 ATATGGGGATAAAATCGACCCACCCAACCCTACACAC
78031512 CATAAAGTAC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.38, C:0.32, G:0.12, T:0.18
Consensus pattern (40 bp):
ATATGGGGATAAAATCGACCCACCCAACCCTACACACTAA
Found at i:78034388 original size:21 final size:21
Alignment explanation
Indices: 78034364--78034405 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
78034354 TTTTGCTCTG
78034364 CTCTGCAACCCTCGCTGCTGC
1 CTCTGCAACCCTCGCTGCTGC
** *
78034385 CTCTGCCTCTCTCGCTGCTGC
1 CTCTGCAACCCTCGCTGCTGC
78034406 ATCCGCTCTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.05, C:0.48, G:0.19, T:0.29
Consensus pattern (21 bp):
CTCTGCAACCCTCGCTGCTGC
Found at i:78034842 original size:13 final size:14
Alignment explanation
Indices: 78034816--78034847 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
78034806 ACTAACAACA
78034816 AATTAAACCATTAT
1 AATTAAACCATTAT
78034830 AATTAAA-CATTAT
1 AATTAAACCATTAT
78034843 AATTA
1 AATTA
78034848 TTTATAGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:78040121 original size:17 final size:18
Alignment explanation
Indices: 78039997--78040219 Score: 154
Period size: 18 Copynumber: 12.7 Consensus size: 18
78039987 TATTTATGTA
* *
78039997 TTATGTAAGTTAAGTAAG
1 TTATATAAGTTATGTAAG
* * *
78040015 TTTTGTAAGTTATGCAAG
1 TTATATAAGTTATGTAAG
* * * * *
78040033 ATATGATATGATATAT-AT
1 TTAT-ATAAGTTATGTAAG
*
78040051 TTATGTAAGTTATGTAAG
1 TTATATAAGTTATGTAAG
* * * *
78040069 TTATGATATGATATAT-AT
1 TTAT-ATAAGTTATGTAAG
*
78040087 TTATGTAAGTTATGTAAG
1 TTATATAAGTTATGTAAG
* *
78040105 TTATAT-ATTTATCTAAG
1 TTATATAAGTTATGTAAG
78040122 TTATATAAGTTATGTAAG
1 TTATATAAGTTATGTAAG
* * *
78040140 TTATGTAAGTTATAT-AT
1 TTATATAAGTTATGTAAG
*
78040157 TTATCTAAGTTATGTAAG
1 TTATATAAGTTATGTAAG
* *
78040175 TTATGTAAGTTATGTAAA
1 TTATATAAGTTATGTAAG
*
78040193 TTATAT---TTATATAAG
1 TTATATAAGTTATGTAAG
78040208 TTATATAAGTTA
1 TTATATAAGTTA
78040220 ATGATATGAT
Statistics
Matches: 153, Mismatches: 43, Indels: 18
0.71 0.20 0.08
Matches are distributed among these distances:
15 13 0.08
17 43 0.28
18 84 0.55
19 13 0.08
ACGTcount: A:0.37, C:0.01, G:0.15, T:0.47
Consensus pattern (18 bp):
TTATATAAGTTATGTAAG
Found at i:78040148 original size:44 final size:44
Alignment explanation
Indices: 78040087--78040219 Score: 225
Period size: 44 Copynumber: 3.1 Consensus size: 44
78040077 TGATATATAT
78040087 TTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAG
1 TTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAG
*
78040131 TTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAG
* *
78040175 TTATGTAAGTTATGTAA-AT-TATATTTATATAAGTTATATAAG
1 TTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAG
78040217 TTA
1 TTA
78040220 ATGATATGAT
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
42 24 0.28
43 1 0.01
44 60 0.71
ACGTcount: A:0.37, C:0.02, G:0.14, T:0.48
Consensus pattern (44 bp):
TTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAG
Found at i:78040216 original size:9 final size:9
Alignment explanation
Indices: 78039997--78040196 Score: 174
Period size: 9 Copynumber: 22.4 Consensus size: 9
78039987 TATTTATGTA
78039997 TTATGTAAG
1 TTATGTAAG
*
78040006 TTAAGTAAG
1 TTATGTAAG
*
78040015 TTTTGTAAG
1 TTATGTAAG
*
78040024 TTATGCAAG
1 TTATGTAAG
* *
78040033 ATATGATATG
1 TTATG-TAAG
* * *
78040043 ATATAT-AT
1 TTATGTAAG
78040051 TTATGTAAG
1 TTATGTAAG
78040060 TTATGTAAG
1 TTATGTAAG
*
78040069 TTATGATATG
1 TTATG-TAAG
* * *
78040079 ATATAT-AT
1 TTATGTAAG
78040087 TTATGTAAG
1 TTATGTAAG
78040096 TTATGTAAG
1 TTATGTAAG
* *
78040105 TTATAT-AT
1 TTATGTAAG
*
78040113 TTATCTAAG
1 TTATGTAAG
*
78040122 TTATATAAG
1 TTATGTAAG
78040131 TTATGTAAG
1 TTATGTAAG
78040140 TTATGTAAG
1 TTATGTAAG
* *
78040149 TTATAT-AT
1 TTATGTAAG
*
78040157 TTATCTAAG
1 TTATGTAAG
78040166 TTATGTAAG
1 TTATGTAAG
78040175 TTATGTAAG
1 TTATGTAAG
*
78040184 TTATGTAAA
1 TTATGTAAG
78040193 TTAT
1 TTAT
78040197 ATTTATATAA
Statistics
Matches: 151, Mismatches: 34, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
8 20 0.13
9 119 0.79
10 12 0.08
ACGTcount: A:0.36, C:0.01, G:0.16, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:78040404 original size:16 final size:16
Alignment explanation
Indices: 78040362--78040421 Score: 54
Period size: 16 Copynumber: 3.9 Consensus size: 16
78040352 ATAAGTTTTA
78040362 AAAACATT-TTAAAAT
1 AAAACATTATTAAAAT
*
78040377 ATTAA-A-TATTAAAAT
1 A-AAACATTATTAAAAT
*
78040392 AAAACATTATTAATAT
1 AAAACATTATTAAAAT
* *
78040408 AAAAAATTAATAAA
1 AAAACATTATTAAA
78040422 TATGATGTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
14 3 0.09
15 11 0.31
16 21 0.60
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAACATTATTAAAAT
Found at i:78040952 original size:23 final size:23
Alignment explanation
Indices: 78040922--78040967 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
78040912 CTTTTTTATT
*
78040922 ATTATCAAATGAATTTTCTTAAC
1 ATTATCAAATAAATTTTCTTAAC
78040945 ATTATCAAATAAATTTTCTTAAC
1 ATTATCAAATAAATTTTCTTAAC
78040968 CAAATACTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.41, C:0.13, G:0.02, T:0.43
Consensus pattern (23 bp):
ATTATCAAATAAATTTTCTTAAC
Found at i:78041116 original size:4 final size:4
Alignment explanation
Indices: 78041109--78041274 Score: 171
Period size: 4 Copynumber: 42.8 Consensus size: 4
78041099 GCATGTTTGT
* * * * *
78041109 TCTC TCTC TCTA TCTC TCTT TC-C CCTC -CTC TC-C TCTC CCTC TCCC
1 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC
* * * * * * * * *
78041154 TCCC TC-C TCCC TCCC TCCC TCCC TCCC TCCC TC-C TCCC TCAC TCTC
1 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC
78041200 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC
1 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC
78041248 TCTC TCTC TCTC TCTC TCTC TCTC TCT
1 TCTC TCTC TCTC TCTC TCTC TCTC TCT
78041275 AATTAATGAA
Statistics
Matches: 147, Mismatches: 10, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
3 13 0.09
4 134 0.91
ACGTcount: A:0.01, C:0.57, G:0.00, T:0.42
Consensus pattern (4 bp):
TCTC
Found at i:78041628 original size:25 final size:24
Alignment explanation
Indices: 78041600--78041674 Score: 87
Period size: 25 Copynumber: 3.0 Consensus size: 24
78041590 CTAGAGAAGT
78041600 AGCAGAGGGATGCCGACAGAGATGC
1 AGCAGAGGGATGCCGAC-GAGATGC
* *
78041625 AGCAGAGGGATGCCGACGGAGAGGT
1 AGCAGAGGGATGCCGAC-GAGATGC
* *
78041650 AGTAGAGGGCTGCCGACGACGATGC
1 AGCAGAGGGATGCCGACGA-GATGC
78041675 CGAGGACTAC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
24 2 0.05
25 40 0.95
ACGTcount: A:0.28, C:0.20, G:0.43, T:0.09
Consensus pattern (24 bp):
AGCAGAGGGATGCCGACGAGATGC
Found at i:78041827 original size:24 final size:24
Alignment explanation
Indices: 78041782--78041827 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
78041772 ACCCAAGATA
* *
78041782 TATGCATATTGATATGTGTATATG
1 TATGCATATTGATATATATATATG
78041806 TATGCATATTGATATATATATA
1 TATGCATATTGATATATATATA
78041828 CACATTACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.35, C:0.04, G:0.15, T:0.46
Consensus pattern (24 bp):
TATGCATATTGATATATATATATG
Found at i:78044675 original size:40 final size:40
Alignment explanation
Indices: 78044592--78044694 Score: 116
Period size: 40 Copynumber: 2.5 Consensus size: 40
78044582 TTTATTTAAA
**
78044592 CTTTTAGCGGCGTTTTTACAAAAGTGCTGCTAAATCTCAAT
1 CTTTT-GCGGCGTTTTTACAAAAGTGCAACTAAATCTCAAT
* * *
78044633 CTTTTGCGGCGTTTTTACAAAATTGCAACTAATTCTCGAT
1 CTTTTGCGGCGTTTTTACAAAAGTGCAACTAAATCTCAAT
* * * *
78044673 CTTTAGTGGCATTTTTAGAAAA
1 CTTTTGCGGCGTTTTTACAAAA
78044695 ACACCGCTAA
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
40 48 0.91
41 5 0.09
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (40 bp):
CTTTTGCGGCGTTTTTACAAAAGTGCAACTAAATCTCAAT
Found at i:78046560 original size:20 final size:20
Alignment explanation
Indices: 78046543--78046582 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
78046533 TTTTTTATTA
78046543 ATTATTTGTACATATTATAT
1 ATTATTTGTACATATTATAT
78046563 ATTATTTGTACATA-TATAT
1 ATTATTTGTACATATTATAT
78046582 A
1 A
78046583 CTTTCATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.53
Consensus pattern (20 bp):
ATTATTTGTACATATTATAT
Found at i:78046883 original size:18 final size:17
Alignment explanation
Indices: 78046860--78046895 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
78046850 TTTAAAATTA
78046860 TTATTAAATATCATATTT
1 TTATTAAATAT-ATATTT
*
78046878 TTATTATATATATATTT
1 TTATTAAATATATATTT
78046895 T
1 T
78046896 GTTAACAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATTAAATATATATTT
Found at i:78048785 original size:22 final size:22
Alignment explanation
Indices: 78048749--78048803 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
78048739 TTTAATCAAT
78048749 TAACCCTT-AAACCTT-ATACAC
1 TAACCCTTAAAACCTTGA-ACAC
78048770 TAACCCTTAAAACCTTGAACAC
1 TAACCCTTAAAACCTTGAACAC
*
78048792 TAAGACCTTAAA
1 TAA-CCCTTAAA
78048804 CCCTAAATAC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 8 0.27
22 14 0.47
23 8 0.27
ACGTcount: A:0.42, C:0.29, G:0.04, T:0.25
Consensus pattern (22 bp):
TAACCCTTAAAACCTTGAACAC
Found at i:78049174 original size:28 final size:29
Alignment explanation
Indices: 78049143--78049205 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
78049133 ATGGATTAGT
78049143 GTTTAGGGTTT-ATGTTTTAAAATTTAA-G
1 GTTTAGGGTTTAATG-TTTAAAATTTAAGG
*
78049171 GTTTAGGGTTTAATGTTTAAGATTTAAGG
1 GTTTAGGGTTTAATGTTTAAAATTTAAGG
78049200 GTTTAG
1 GTTTAG
78049206 AGAAAACCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 22 0.69
29 10 0.31
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (29 bp):
GTTTAGGGTTTAATGTTTAAAATTTAAGG
Found at i:78049182 original size:21 final size:21
Alignment explanation
Indices: 78049144--78049204 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
78049134 TGGATTAGTG
* * *
78049144 TTTAGGGTTTATGTTTTAAAA
1 TTTAAGGTTTAGGGTTTAAAA
**
78049165 TTTAAGGTTTAGGGTTTAATG
1 TTTAAGGTTTAGGGTTTAAAA
*
78049186 TTTAAGATTTAAGGGTTTA
1 TTTAAGGTTT-AGGGTTTA
78049205 GAGAAAACCA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 25 0.76
22 8 0.24
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.49
Consensus pattern (21 bp):
TTTAAGGTTTAGGGTTTAAAA
Found at i:78049543 original size:40 final size:40
Alignment explanation
Indices: 78049498--78049690 Score: 181
Period size: 41 Copynumber: 4.8 Consensus size: 40
78049488 TTTTGCGGCA
* *
78049498 TTTGGACCAAAAACGCCGCTATTGATCTGTTTTAGTGGTG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTAGTGGCG
* * *
78049538 TTTGGACCAAAAACGCCGCTACTGCTCAGTTTTTAGTGGCA
1 TTTGGACCAAAAACGCCGCTATTGATCAG-TTTTAGTGGCG
** ** * *
78049579 TTTTAAATAAAAACGCCGCTATTCATCAAATTTTAGTGGCG
1 TTTGGACCAAAAACGCCGCTATTGATC-AGTTTTAGTGGCG
* * **
78049620 TTT-TAGCTAAAAGTGCCGCTATTGATCAGTTTCTAGTGGCG
1 TTTGGA-CCAAAAACGCCGCTATTGATCAGTTT-TAGTGGCG
* * *
78049661 TTTGGGCCAAAAATGCCGCTATTGTTCAGT
1 TTTGGACCAAAAACGCCGCTATTGATCAGT
78049691 GAAAAGGCTG
Statistics
Matches: 123, Mismatches: 25, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
40 31 0.25
41 91 0.74
42 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (40 bp):
TTTGGACCAAAAACGCCGCTATTGATCAGTTTTAGTGGCG
Found at i:78053004 original size:8 final size:8
Alignment explanation
Indices: 78052993--78053017 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
78052983 TTCAATAAGA
78052993 TATTTTAT
1 TATTTTAT
78053001 TATTTTAT
1 TATTTTAT
78053009 TATTTTAT
1 TATTTTAT
78053017 T
1 T
78053018 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:78055117 original size:13 final size:13
Alignment explanation
Indices: 78055099--78055123 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78055089 TCTTCTCTCC
78055099 TCTCTCATTTTCT
1 TCTCTCATTTTCT
78055112 TCTCTCATTTTC
1 TCTCTCATTTTC
78055124 CCATTCAAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.00, T:0.60
Consensus pattern (13 bp):
TCTCTCATTTTCT
Found at i:78063447 original size:40 final size:39
Alignment explanation
Indices: 78063402--78063569 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 39
78063392 CGGAATACAA
78063402 CCGGATATAACCACGT-GCACAAGTGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAA-TGCCTTCGGGTCTTAGC
* * *
78063442 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCAC-AATGCCTTCGGGTCTTAGC
* * *
78063482 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAA-TGCCTTCGGGTCTTAGC
*** * * * *
78063522 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCA-CAATGCCTTCGGGTCTTAGC
78063562 CCGGATAT
1 CCGGATAT
78063570 CATTCAATTT
Statistics
Matches: 106, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.03
40 99 0.93
41 4 0.04
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:78063552 original size:80 final size:80
Alignment explanation
Indices: 78063418--78063567 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 80
78063408 ATAACCACGT
* * *
78063418 GCACAAGTGCCTTCGGGTCTTAGCCCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAGTGCCTTCGGGTCTTAACCCGGATAGAACGACTCGCACAAATGCCTTCGGGACTTAGCC
78063483 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * *** * *
78063498 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCATAAATGTCTTCGGGACTTAGC
1 GCACAAGTGCCTTCGGGTCTTAACCCGGATAGAACGACTC-GCACAAATGCCTTCGGGACTTAGC
78063562 CCGGAT
65 CCGGAT
78063568 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.02
80 58 0.98
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (80 bp):
GCACAAGTGCCTTCGGGTCTTAACCCGGATAGAACGACTCGCACAAATGCCTTCGGGACTTAGCC
CGGATGTAGCCACTA
Found at i:78066914 original size:46 final size:45
Alignment explanation
Indices: 78066847--78067021 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 45
78066837 TGTAACCCGC
78066847 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
* *
78066893 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGTAT
* *** * * *
78066939 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
* *
78066986 CCATAAGTGAACTCGGATTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
78067022 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
45 1 0.01
46 70 0.65
47 35 0.32
48 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGTAT
Found at i:78066967 original size:93 final size:93
Alignment explanation
Indices: 78066855--78067025 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
78066845 GCCCATAAGT
* * *
78066855 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
78066920 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
78066948 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGATTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
78067013 CGAGTTCGGATGC
66 CGAGCTCGGATGC
78067026 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:78068971 original size:15 final size:15
Alignment explanation
Indices: 78068947--78069008 Score: 83
Period size: 15 Copynumber: 4.2 Consensus size: 15
78068937 AGGAAACCGA
78068947 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
78068962 ATAGAGAAATCCAA-
1 ATAAAGAAATCCAAG
78068976 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
78068990 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
78069006 ATA
1 ATA
78069009 CGATACTATG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
13 1 0.02
14 11 0.27
15 27 0.66
16 2 0.05
ACGTcount: A:0.60, C:0.15, G:0.13, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:78068998 original size:29 final size:29
Alignment explanation
Indices: 78068946--78069004 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
78068936 AAGGAAACCG
* *
78068946 AATAAAGAAATCCAAGATAGAGAAATCCA
1 AATAAAGAAATCCAAGATAAAGAAACCCA
78068975 AATAAAGAAATCC-AGAATAAAGAAACCCA
1 AATAAAGAAATCCAAG-ATAAAGAAACCCA
78069004 A
1 A
78069005 GATACGATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 2 0.07
29 25 0.93
ACGTcount: A:0.61, C:0.15, G:0.12, T:0.12
Consensus pattern (29 bp):
AATAAAGAAATCCAAGATAAAGAAACCCA
Found at i:78072058 original size:46 final size:46
Alignment explanation
Indices: 78071935--78072061 Score: 218
Period size: 46 Copynumber: 2.8 Consensus size: 46
78071925 TGTAACCCGC
* * * *
78071935 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
78071981 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
78072027 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
78072062 ATGCTCAACC
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:78073829 original size:59 final size:59
Alignment explanation
Indices: 78073734--78073849 Score: 196
Period size: 59 Copynumber: 2.0 Consensus size: 59
78073724 TCAATGAATA
* *
78073734 ATTCAAGCTTTGAAGAGACCTTATTACCATTAAAGAAGTTAATAACTTCATTTTTAATT
1 ATTCAAGCTTTGAAAAGACCTTATTACCATTAAAGAAGTAAATAACTTCATTTTTAATT
* *
78073793 ATTCAAGCTTTGAAAAGACGTTATTACCATTTAAGAAGTAAATAACTTCATTTTTAA
1 ATTCAAGCTTTGAAAAGACCTTATTACCATTAAAGAAGTAAATAACTTCATTTTTAA
78073850 AAATTTTGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.38
Consensus pattern (59 bp):
ATTCAAGCTTTGAAAAGACCTTATTACCATTAAAGAAGTAAATAACTTCATTTTTAATT
Found at i:78077507 original size:40 final size:40
Alignment explanation
Indices: 78077452--78077655 Score: 205
Period size: 40 Copynumber: 5.1 Consensus size: 40
78077442 TGAATGAAAC
* ** * *
78077452 CCGGGCTAAGTCCCGAAGGCATTTATCCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
*
78077492 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
*
78077532 CTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
* * * * *** *
78077572 CCGGGCTAAGACTCAAAGGCATTGGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
* ** *
78077612 CCGGGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
78077652 CCGG
1 CCGG
78077656 TTAGATTCTG
Statistics
Matches: 135, Mismatches: 27, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
40 130 0.96
41 5 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
Found at i:78077591 original size:80 final size:79
Alignment explanation
Indices: 78077452--78077655 Score: 230
Period size: 80 Copynumber: 2.5 Consensus size: 79
78077442 TGAATGAAAC
* * * *
78077452 CCGGGCTAAGTCCCGAAGGCATTTATCCTAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTTG-TTATATCCGGGCTAAGACCCAAAGGCATTC
* ***
78077516 GTGCGAGTTGTTAAAT
64 GTGCAAGTTACCAAAT
* * * *
78077532 CTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACTCAAAGGCATTGG
1 CCGGGCTAAGACCCGAAGGCATT-GTGCTAGTTGTTATATCCGGGCTAAGACCCAAAGGCATTCG
78077597 TGCAAGTTACCAAAT
65 TGCAAGTTACCAAAT
* * *
78077612 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCTAGTTGTTATATCCGG
78077656 TTAGATTCTG
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
79 2 0.02
80 97 0.93
81 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCTAGTTGTTATATCCGGGCTAAGACCCAAAGGCATTCGT
GCAAGTTACCAAAT
Found at i:78081492 original size:29 final size:29
Alignment explanation
Indices: 78081454--78081527 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
78081444 CCCTCGAGCT
78081454 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
78081483 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
78081512 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
78081528 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:78089335 original size:29 final size:29
Alignment explanation
Indices: 78089310--78089402 Score: 98
Period size: 29 Copynumber: 3.2 Consensus size: 29
78089300 TCGCACACCC
*
78089310 AGTGCCGTATTTTTCCAGCTTGCACACAT
1 AGTGCCATATTTTTCCAGCTTGCACACAT
** * *
78089339 AGTGTAATA-TTTTCCAGCATGCACACTT
1 AGTGCCATATTTTTCCAGCTTGCACACAT
* ** *
78089367 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATTTTTCCAGCTTGCACACAT
78089396 AGTGCCA
1 AGTGCCA
78089403 ATCTCGTCAC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
28 24 0.44
29 30 0.56
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (29 bp):
AGTGCCATATTTTTCCAGCTTGCACACAT
Found at i:78089361 original size:28 final size:28
Alignment explanation
Indices: 78089320--78089400 Score: 108
Period size: 28 Copynumber: 2.9 Consensus size: 28
78089310 AGTGCCGTAT
* * *
78089320 TTTTCCAGCTTGCACACATAGTGTAATA
1 TTTTCCAGCATGCACACTTAGTGCAATA
*
78089348 TTTTCCAGCATGCACACTTAGTGCCATA
1 TTTTCCAGCATGCACACTTAGTGCAATA
*
78089376 TATTTCCAGCACGCACACTTAGTGC
1 T-TTTCCAGCATGCACACTTAGTGC
78089401 CAATCTCGTC
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 25 0.53
29 22 0.47
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (28 bp):
TTTTCCAGCATGCACACTTAGTGCAATA
Found at i:78095650 original size:40 final size:39
Alignment explanation
Indices: 78095595--78095798 Score: 214
Period size: 40 Copynumber: 5.1 Consensus size: 39
78095585 TGAATGAAAC
* ** *
78095595 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTG-TTATAT
* *
78095635 CCGGGATAAGACCCGAAGGCATTCGTGCGAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAG-TGTTATAT
78095675 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAG-TGTTATAT
* * * *
78095715 CCGGGCTAAGACCCGAAGGCATTGGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGT--TATAT
* **
78095755 CCGGGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT-GTTATAT
78095795 CCGG
1 CCGG
78095799 TTAGATTCCG
Statistics
Matches: 141, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 133 0.94
41 5 0.04
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGTTATAT
Found at i:78095728 original size:80 final size:79
Alignment explanation
Indices: 78095595--78095798 Score: 257
Period size: 80 Copynumber: 2.5 Consensus size: 79
78095585 TGAATGAAAC
* *
78095595 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGATAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTTG-TTATATCCGGGATAAGACCCGAAGGCATTC
* ***
78095659 GTGCGAGTTGTTAAAT
64 GTGCAAGTTACCAAAT
* * *
78095675 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTGG
1 CCGGGCTAAGACCCGAAGGCATT-GTGCTAGTTGTTATATCCGGGATAAGACCCGAAGGCATTCG
78095740 TGCAAGTTACCAAAT
65 TGCAAGTTACCAAAT
* * *
78095755 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCTAGTTGTTATATCCGG
78095799 TTAGATTCCG
Statistics
Matches: 108, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
79 2 0.02
80 101 0.94
81 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCTAGTTGTTATATCCGGGATAAGACCCGAAGGCATTCGT
GCAAGTTACCAAAT
Found at i:78097718 original size:31 final size:31
Alignment explanation
Indices: 78097674--78097742 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 31
78097664 CCTATTAGGC
*
78097674 CGTGTAGG-CCACACGAGTTAAACATACGAA
1 CGTGTGGGCCCACACGAGTTAAACATACGAA
* * * *
78097704 TGTGTGGGCCCACACGGGTTAACCATACGAG
1 CGTGTGGGCCCACACGAGTTAAACATACGAA
78097735 CGTGTGGG
1 CGTGTGGG
78097743 ATTTTGGGCC
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 6 0.19
31 26 0.81
ACGTcount: A:0.26, C:0.23, G:0.32, T:0.19
Consensus pattern (31 bp):
CGTGTGGGCCCACACGAGTTAAACATACGAA
Found at i:78104539 original size:15 final size:15
Alignment explanation
Indices: 78104519--78104575 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
78104509 GGAGCACGGC
78104519 AATCAAAACTCATGT
1 AATCAAAACTCATGT
* ***
78104534 AATCAAAACTTAAAAC
1 AATCAAAAC-TCATGT
*
78104550 AATATAAAACTCATGT
1 AAT-CAAAACTCATGT
78104566 AATCAAAACT
1 AATCAAAACT
78104576 TAAAAAGAAG
Statistics
Matches: 30, Mismatches: 10, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
15 15 0.50
16 10 0.33
17 5 0.17
ACGTcount: A:0.54, C:0.18, G:0.04, T:0.25
Consensus pattern (15 bp):
AATCAAAACTCATGT
Found at i:78118183 original size:27 final size:27
Alignment explanation
Indices: 78118145--78118198 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
78118135 CATGTAAAAA
78118145 GACACTTATCCGGGCATAAGAGTTTTT
1 GACACTTATCCGGGCATAAGAGTTTTT
78118172 GACACTTATCCGGGCATAAGAGTTTTT
1 GACACTTATCCGGGCATAAGAGTTTTT
78118199 ACTTAGGGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (27 bp):
GACACTTATCCGGGCATAAGAGTTTTT
Found at i:78124467 original size:16 final size:16
Alignment explanation
Indices: 78124446--78124476 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
78124436 AAATATTATA
*
78124446 AATTAATTAATTTTCC
1 AATTAAATAATTTTCC
78124462 AATTAAATAATTTTC
1 AATTAAATAATTTTC
78124477 TCAACCTGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTAAATAATTTTCC
Done.