Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 253 of 410
Found at i:78126170 original size:22 final size:21
Alignment explanation
Indices: 78126128--78126167 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
78126118 TAATTTACAT
**
78126128 AAAAAGTATTAATACCTTTAC
1 AAAAAGTACCAATACCTTTAC
78126149 AAAAAGTACCAATACCTTT
1 AAAAAGTACCAATACCTTT
78126168 TACCAGGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.47, C:0.17, G:0.05, T:0.30
Consensus pattern (21 bp):
AAAAAGTACCAATACCTTTAC
Found at i:78141546 original size:30 final size:30
Alignment explanation
Indices: 78141491--78141650 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
78141481 ATAGTGAATC
78141491 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
78141520 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
78141550 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
78141579 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
78141607 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
78141637 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78141651 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:78141583 original size:59 final size:57
Alignment explanation
Indices: 78141491--78141650 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
78141481 ATAGTGAATC
*
78141491 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
78141550 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
78141607 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
78141651 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:78148759 original size:30 final size:30
Alignment explanation
Indices: 78148704--78148863 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
78148694 ATAGTGAATC
78148704 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
78148733 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
78148763 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
78148792 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
78148820 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
78148850 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78148864 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:78148796 original size:59 final size:57
Alignment explanation
Indices: 78148704--78148863 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
78148694 ATAGTGAATC
*
78148704 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
78148763 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
78148820 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
78148864 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:78163904 original size:51 final size:51
Alignment explanation
Indices: 78163814--78163988 Score: 149
Period size: 51 Copynumber: 3.4 Consensus size: 51
78163804 TAGGTCGCAT
* * * ** *
78163814 GTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-ATAGCTTCGATCACAT
1 GTGTGGTACTAAGTGCAGGCCACTATGTGTA-AAAGATAGCTTCGATCACAA
* * *
78163865 TTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTGGGTCACAA
1 GTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTCGATCACAA
* ** * * *
78163916 GTGTGGTACTATGTTAAGGCCACTTTGTG-AAGAAGGTAGCTTTGA-CTACAA
1 GTGTGGTACTAAGTGCAGGCCACTATGTGTAA-AAGATAGCTTCGATC-ACAA
* *
78163967 GGGTGGTACTATGTGCAGGCCA
1 GTGTGGTACTAAGTGCAGGCCA
78163989 TCGGGCATCC
Statistics
Matches: 101, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
50 4 0.04
51 97 0.96
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (51 bp):
GTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTCGATCACAA
Found at i:78179484 original size:39 final size:40
Alignment explanation
Indices: 78179384--78179565 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
78179374 TCGAATGATG
* * *
78179384 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
78179424 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
78179464 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
78179502 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
78179543 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
78179566 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:78179529 original size:78 final size:80
Alignment explanation
Indices: 78179384--78179565 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
78179374 TCGAATGATG
* * * *
78179384 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
78179449 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
78179464 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
78179526 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
78179543 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
78179566 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:78187560 original size:77 final size:79
Alignment explanation
Indices: 78187416--78187596 Score: 210
Period size: 77 Copynumber: 2.3 Consensus size: 79
78187406 TCGAATGATG
* * * *
78187416 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
78187481 GTGCGAGTTAATAA
66 GTGCGAGTTAATAA
* **
78187495 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
78187557 CGTGCGAGTCGCT-ATAA
65 CGTGCGAGT---TAATAA
**
78187574 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
78187597 TGAGCGAGTC
Statistics
Matches: 88, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
76 1 0.01
77 36 0.41
78 23 0.26
79 27 0.31
80 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAA
Found at i:78187589 original size:40 final size:40
Alignment explanation
Indices: 78187469--78187606 Score: 128
Period size: 40 Copynumber: 3.5 Consensus size: 40
78187459 GGACTAGGAT
* *
78187469 CCGAAGGCATTCGTGCGAGT--TAATAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTCCT-ATAACCCGGGCTTAGTC
* *
78187507 CCGAAGGCATT-GTGCAAGTTACTA-AACCCGGG-TTAAGTC
1 CCGAAGGCATTCGTGCGAG-TCCTATAACCCGGGCTT-AGTC
*
78187546 CCGAAGGCATTCGTGCGAGTCGCTATAA-CCGGGCTTCGTC
1 CCGAAGGCATTCGTGCGAGTC-CTATAACCCGGGCTTAGTC
* *
78187586 CCGAAGGCATTTGAGCGAGTC
1 CCGAAGGCATTCGTGCGAGTC
78187607 ATTATATCCG
Statistics
Matches: 83, Mismatches: 8, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
37 7 0.08
38 21 0.25
39 14 0.17
40 37 0.45
41 4 0.05
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTCCTATAACCCGGGCTTAGTC
Found at i:78187629 original size:79 final size:77
Alignment explanation
Indices: 78187468--78187631 Score: 172
Period size: 79 Copynumber: 2.1 Consensus size: 77
78187458 CGGACTAGGA
* *
78187468 TCCGAAGGCATTCGTGCGAGTTAATAATCCGGGCTAAGCCCGAAGGCATTGTGCAAGTTACTAAA
1 TCCGAAGGCATTCGTGCGAGTTAATAATCCGGGCTAAGCCCGAAGGCATTGAGCAAGTCACTAAA
*
78187533 CCCGGGTTAAGT
66 CCCGGGTTAAAT
* ** *
78187545 CCCGAAGGCATTCGTGCGAGTCGCT-ATAA-CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCA
1 TCCGAAGGCATTCGTGCGAGT---TAATAATCCGGGCTAAG-CCCGAAGGCA-TTGAGCAAGTCA
* * *
78187608 TTATATCC-GGTTAAAT
61 CTAAACCCGGGTTAAAT
78187624 TCCGAAGG
1 TCCGAAGG
78187632 TACGTGATTC
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
77 20 0.28
78 8 0.11
79 28 0.39
80 15 0.21
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (77 bp):
TCCGAAGGCATTCGTGCGAGTTAATAATCCGGGCTAAGCCCGAAGGCATTGAGCAAGTCACTAAA
CCCGGGTTAAAT
Found at i:78193722 original size:30 final size:30
Alignment explanation
Indices: 78193688--78193748 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
78193678 TCCTTAACTC
78193688 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
78193718 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
78193748 A
1 A
78193749 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:78198150 original size:30 final size:30
Alignment explanation
Indices: 78198116--78198176 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
78198106 TCCTTAACTC
78198116 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
78198146 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
78198176 A
1 A
78198177 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:78201002 original size:46 final size:46
Alignment explanation
Indices: 78200935--78201103 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
78200925 TGTAACCCGC
*
78200935 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCTAGCTTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCTTTTGCAT
* * *
78200981 CCATAAGTGAACTCGGACTCAACTCAACCAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GA-G-CT-TTTGCAT
* * * *
78201031 CTC-T---CGAACTCAGACTCAACTCAACGAGTTCGA-CATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCTTTTGCAT
78201073 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
78201104 TTCGGATGCC
Statistics
Matches: 101, Mismatches: 13, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 1 0.01
45 22 0.22
46 35 0.35
47 24 0.24
48 1 0.01
49 2 0.02
50 7 0.07
51 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCTTTTGCAT
Found at i:78201109 original size:92 final size:93
Alignment explanation
Indices: 78200943--78201113 Score: 281
Period size: 92 Copynumber: 1.8 Consensus size: 93
78200933 GCCCATAAGT
* * *
78200943 GAACTCGGACTCAACTCAACGAGCTCTAGCTTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAGCATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
78201008 CCAGCTCGGATGCCTAGTTACATCTCTC
66 CCAGCTCGGATGCCTAGTTACATCTCTC
*
78201036 GAACTCAGACTCAACTCAACGAGTTCGA-CATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAGCATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
78201100 CGAGTTCGGATGCC
66 CCAGCTCGGATGCC
78201114 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 47 0.65
93 25 0.35
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGAGCATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
CCAGCTCGGATGCCTAGTTACATCTCTC
Found at i:78203496 original size:14 final size:15
Alignment explanation
Indices: 78203477--78203509 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
78203467 CAAAGATAAC
78203477 AAGAAAACT-GAATA
1 AAGAAAACTAGAATA
*
78203491 AAGAAATCTAGAATA
1 AAGAAAACTAGAATA
78203506 AAGA
1 AAGA
78203510 GATCCAGGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.64, C:0.06, G:0.15, T:0.15
Consensus pattern (15 bp):
AAGAAAACTAGAATA
Found at i:78210462 original size:40 final size:39
Alignment explanation
Indices: 78210297--78210480 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
78210287 AAATTGAATG
* * *
78210297 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
78210337 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
78210377 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
78210417 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
78210456 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
78210481 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:78210505 original size:80 final size:81
Alignment explanation
Indices: 78210337--78210525 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
78210327 GCTGGAAATT
* * * *
78210337 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
78210402 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
78210418 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
78210481 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
78210497 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
78210526 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:78216062 original size:119 final size:119
Alignment explanation
Indices: 78215849--78216133 Score: 437
Period size: 119 Copynumber: 2.4 Consensus size: 119
78215839 TGGTATTCTT
*
78215849 GAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACATTCTCAAATATAGCAGATCTAACCTT
1 GAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAGCAGATCTAACCTT
* *
78215914 CAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAA
66 CAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATCCTTGTGCTTACAA
* *
78215968 GAAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAATATAGTAGATCTAACCTT
1 GAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAGCAGATCTAACCTT
* * *
78216033 CAGATGTTTATACTGAAGTAGATCTAAGATGATTTGGTATCCTTGTGCTTACAA
66 CAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATCCTTGTGCTTACAA
* * * * *
78216087 -AGAACAAATCGAGGACGTTGCAGATATGACTCTCAAATGTTCTCAAA
1 GA-AACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
78216134 CAGACTCAAG
Statistics
Matches: 151, Mismatches: 14, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
118 1 0.01
119 150 0.99
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (119 bp):
GAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAGCAGATCTAACCTT
CAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATCCTTGTGCTTACAA
Found at i:78216197 original size:83 final size:83
Alignment explanation
Indices: 78216058--78216408 Score: 630
Period size: 83 Copynumber: 4.2 Consensus size: 83
78216048 AAGTAGATCT
* *
78216058 AAGATGATTTGGTATCCTTGTGCTTACAAAGAACAAATCGAGGACGTTGCAGATATGACTCTCAA
1 AAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGACTCTCAA
78216123 ATGTTCTCAAACAGACTC
66 ATGTTCTCAAACAGACTC
78216141 AAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGACTCTCAA
1 AAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGACTCTCAA
78216206 ATGTTCTCAAACAGACTC
66 ATGTTCTCAAACAGACTC
* * *
78216224 AAGATGGTTTGGCATTCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAA
1 AAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGACTCTCAA
78216289 ATGTTCTCAAACAGACTC
66 ATGTTCTCAAACAGACTC
* *
78216307 AAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGTAGATATGACTCTCAA
1 AAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGACTCTCAA
78216372 ATGTTCTCAAACAGACTC
66 ATGTTCTCAAACAGACTC
*
78216390 AAGATGATTTGACATCCTT
1 AAGATGATTTGGCATCCTT
78216409 ACAAATCGAA
Statistics
Matches: 258, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 258 1.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (83 bp):
AAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGACTCTCAA
ATGTTCTCAAACAGACTC
Found at i:78218341 original size:17 final size:18
Alignment explanation
Indices: 78218309--78218345 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
78218299 TTTACATCTC
*
78218309 TTTCATATATTATTATAT
1 TTTCACATATTATTATAT
78218327 TTTCACATA-TATTATAT
1 TTTCACATATTATTATAT
78218344 TT
1 TT
78218346 ATTAATTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTCACATATTATTATAT
Found at i:78218468 original size:18 final size:20
Alignment explanation
Indices: 78218445--78218493 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
78218435 ATATAATCTT
78218445 TATTATGTT-TT-ATTTTTA
1 TATTATGTTATTGATTTTTA
*
78218463 TATTAT-TTATTGTTTTTTA
1 TATTATGTTATTGATTTTTA
78218482 TATATATGTTAT
1 TAT-TATGTTAT
78218494 GTATATCATG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 2 0.08
18 8 0.31
19 9 0.35
20 3 0.12
21 4 0.15
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.69
Consensus pattern (20 bp):
TATTATGTTATTGATTTTTA
Found at i:78225165 original size:71 final size:71
Alignment explanation
Indices: 78225081--78225244 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78225071 CGATTTGTCT
78225081 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78225146 CTTTCA
66 CTTTCA
78225152 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78225217 CTTTCA
66 CTTTCA
78225223 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
78225245 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:78225282 original size:71 final size:70
Alignment explanation
Indices: 78225081--78225278 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
78225071 CGATTTGTCT
* * * *
78225081 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78225146 CTTTCA
65 CTTTCA
* * * *
78225152 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78225217 CTTTCA
65 CTTTCA
* *
78225223 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
78225279 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:78232741 original size:71 final size:71
Alignment explanation
Indices: 78232657--78232820 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78232647 CGATTTGTCT
78232657 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78232722 CTTTCA
66 CTTTCA
78232728 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78232793 CTTTCA
66 CTTTCA
78232799 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
78232821 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:78232858 original size:71 final size:70
Alignment explanation
Indices: 78232657--78232854 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
78232647 CGATTTGTCT
* * * *
78232657 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78232722 CTTTCA
65 CTTTCA
* * * *
78232728 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78232793 CTTTCA
65 CTTTCA
* *
78232799 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
78232855 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:78238854 original size:28 final size:28
Alignment explanation
Indices: 78238822--78238890 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
78238812 AATGAGATTG
78238822 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
78238850 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
78238878 GCACTAAGTGTGC
1 GCACTAAGTGTGC
78238891 AGACTTACTA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
28 33 0.87
29 4 0.11
30 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:78248112 original size:344 final size:344
Alignment explanation
Indices: 78247636--78248325 Score: 1098
Period size: 344 Copynumber: 2.0 Consensus size: 344
78247626 CATTGGATCT
* *
78247636 CTGTACAGGAAGAAATTTGATTCGTAGTGCACAGGGGTCAGAGTAGCCGAACCCTGAAACAGGGG
1 CTGTACAGGAAGAAATTTGATTCGTAGTGCACAGGGGTCAGAGTAGCCAAACCCTGAAACAGGGA
* * * * *
78247701 AGATTTTAACTAATAAACTGTACTAATTGGCCTTGCCAAAAACTTGAGAAAAAAAATAGTAAGTA
66 AGACTTTAACTAATAAACTGCACCAATTGGCCCTACCAAAAACTTGAGAAAAAAAATAGTAAGTA
* * *
78247766 GATATATGAGTCTAGTTTTATGAAAAATTTACAGAATTTTATATCGAGTTTCGTAACTCGAGATA
131 GATATATGAGTCTAGTTTCAGGAAAAATTTACAAAATTTTATATCGAGTTTCGTAACTCGAGATA
78247831 TGA-TTTTTTAGCGACTGTGACACAGATGGACAGTTTACTACGAGAATTGTTTGAACTTGTTTAA
196 TGATTTTTTTA-CGACTGTGACACAGATGGACAGTTTACTACGAGAATTGTTTGAACTTGTTTAA
*
78247895 ATGCTAAAACAAGTTTAGTAATGTCTCATGCTCGACTCCGGCCACGGTCTTGGGTAAGC-GGACG
260 ATGCTAAAACAAGTTTAGTAATGTCTCATACTCGACTCCGGCCACGGTCTTGGGTAAGCAGG-CG
78247959 TTACATTTGGTGGTATCAGAG
324 TTACATTTGGTGGTATCAGAG
* * * *
78247980 CTGTACAGGTAGAAATTTGATTCGTAGTGCACGGGGGTTAGAGTAGCCAAACCCTGAAATAGGGA
1 CTGTACAGGAAGAAATTTGATTCGTAGTGCACAGGGGTCAGAGTAGCCAAACCCTGAAACAGGGA
* * * *
78248045 AGACTTTAACTGATAAACTGCACCAATTGGCCCTACCAAAAA-TTCTAGAAAAAAATTTGTAAGT
66 AGACTTTAACTAATAAACTGCACCAATTGGCCCTACCAAAAACTT-GAGAAAAAAAATAGTAAGT
* *
78248109 AGATATATGAGTCTAGTTTCAGGAAAAATTTACAAAATTTTATTTCGAGTTTTGTAACTCGAGAT
130 AGATATATGAGTCTAGTTTCAGGAAAAATTTACAAAATTTTATATCGAGTTTCGTAACTCGAGAT
*
78248174 ATGATTTTTTTACGACTGTGACGCAGATGGACAGTTTACTACGAGAATTGTTTGAACTTGTTTAA
195 ATGATTTTTTTACGACTGTGACACAGATGGACAGTTTACTACGAGAATTGTTTGAACTTGTTTAA
* * **
78248239 ATGCTAAAATAAGTTTAGTAATGTCTCATACTCGACTCTGGTGACGGTCTTGGGTAAGCAGGCGT
260 ATGCTAAAACAAGTTTAGTAATGTCTCATACTCGACTCCGGCCACGGTCTTGGGTAAGCAGGCGT
78248304 TACATTTGGTGGTATCAGAG
325 TACATTTGGTGGTATCAGAG
78248324 CT
1 CT
78248326 ACAGTTTAGT
Statistics
Matches: 317, Mismatches: 26, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
343 2 0.01
344 306 0.97
345 9 0.03
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (344 bp):
CTGTACAGGAAGAAATTTGATTCGTAGTGCACAGGGGTCAGAGTAGCCAAACCCTGAAACAGGGA
AGACTTTAACTAATAAACTGCACCAATTGGCCCTACCAAAAACTTGAGAAAAAAAATAGTAAGTA
GATATATGAGTCTAGTTTCAGGAAAAATTTACAAAATTTTATATCGAGTTTCGTAACTCGAGATA
TGATTTTTTTACGACTGTGACACAGATGGACAGTTTACTACGAGAATTGTTTGAACTTGTTTAAA
TGCTAAAACAAGTTTAGTAATGTCTCATACTCGACTCCGGCCACGGTCTTGGGTAAGCAGGCGTT
ACATTTGGTGGTATCAGAG
Found at i:78268420 original size:13 final size:14
Alignment explanation
Indices: 78268386--78268422 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
78268376 TGAAATAAAG
78268386 GAAAATCTAAACTT
1 GAAAATCTAAACTT
*
78268400 GAAAATCTAAATTT
1 GAAAATCTAAACTT
78268414 G-AAATCTAA
1 GAAAATCTAA
78268423 TTGGACCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 8 0.36
14 14 0.64
ACGTcount: A:0.51, C:0.11, G:0.08, T:0.30
Consensus pattern (14 bp):
GAAAATCTAAACTT
Found at i:78269982 original size:38 final size:38
Alignment explanation
Indices: 78269931--78270025 Score: 122
Period size: 37 Copynumber: 2.5 Consensus size: 38
78269921 TAACACTTTG
* *
78269931 ACCACCCTGCACACCACAATAAGG-CCATGAGAGACTCA
1 ACCACCCTACACACCACAAT-AGGACCATAAGAGACTCA
* *
78269969 ACCACCCTACACACCAC-ATAGGACCATAATAGGCTCA
1 ACCACCCTACACACCACAATAGGACCATAAGAGACTCA
*
78270006 TCCACCCTACACACCACAAT
1 ACCACCCTACACACCACAAT
78270026 TGTGGAACTA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
36 3 0.06
37 29 0.58
38 18 0.36
ACGTcount: A:0.37, C:0.40, G:0.11, T:0.13
Consensus pattern (38 bp):
ACCACCCTACACACCACAATAGGACCATAAGAGACTCA
Found at i:78270823 original size:20 final size:18
Alignment explanation
Indices: 78270776--78270825 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 18
78270766 TGCAGTTTTG
*
78270776 ATAAAATTCTTATAAAAA
1 ATAAAATTTTTATAAAAA
78270794 ATAATTAATTTTTATAAAATA
1 ATAA--AATTTTTATAAAA-A
78270815 ATTAAAATTTT
1 A-TAAAATTTT
78270826 ACTTAAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 4 0.15
20 18 0.67
21 2 0.07
22 3 0.11
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
ATAAAATTTTTATAAAAA
Found at i:78270833 original size:20 final size:18
Alignment explanation
Indices: 78270791--78270826 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
78270781 ATTCTTATAA
*
78270791 AAAATAATTAATTTTTAT
1 AAAATAATTAAATTTTAT
78270809 AAAATAATTAAAATTTTA
1 AAAATAATT-AAATTTTA
78270827 CTTAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AAAATAATTAAATTTTAT
Found at i:78273981 original size:53 final size:52
Alignment explanation
Indices: 78273901--78274351 Score: 442
Period size: 53 Copynumber: 8.5 Consensus size: 52
78273891 TTAGTTTACC
* * * *
78273901 AAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCCGATTTATA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCAAA-TACCCTCGA-TTGTA
* * *
78273954 AAATTA-TCGAAATACCGTCGA-TTGTAAAATTACTGAAATACCCTCAATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTAAAATTAC-CAAATACCCTCGA-TTGTA
* * * *
78274007 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCCGTTTATA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCAAA-TA-CCCTCGATTGTA
** * * *
78274061 AAATTACCCAAATATCCTCGATTTGTAAAATTATCGAAATACCATCGATTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTA-CCAAATACCCTCGATTGTA
* ** *
78274114 AAATTATTGAAATACCCTCGATTTGTAAAATTACCGAAATACTGTTGATTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACC-AAATACCCTCGATTGTA
* * *
78274167 AAATTACTGAAATACCCTTGATTTGTAAAATTACCGAAATACCATCGAATGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACC-AAATACCCTCGATTGTA
** * *
78274220 AAATTACTGAAATACCCTCGATTTGTAAAATTATTGAAATACCCTCAGTTTGCA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTA-CCAAATACCCTC-GATTGTA
* * * *
78274274 AAATTACGGAAATACCCTCAATTTATAAAATTACTAAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTAC-CAAATACCCTCGA-TTGTA
* *
78274328 AAATTA-TCAAAGTACCCCCGATTT
1 AAATTACTGAAA-TACCCTCGATTT
78274352 ACAGAATTAC
Statistics
Matches: 331, Mismatches: 53, Indels: 27
0.81 0.13 0.07
Matches are distributed among these distances:
52 2 0.01
53 202 0.61
54 119 0.36
55 8 0.02
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (52 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTACCAAATACCCTCGATTGTA
Found at i:78274371 original size:81 final size:81
Alignment explanation
Indices: 78273901--78274398 Score: 272
Period size: 80 Copynumber: 6.2 Consensus size: 81
78273891 TTAGTTTACC
* * * *
78273901 AAATTACTGAAATACCC-CCAGTTGTAAAATTA-CCAAAGTACCCCC-GATTTATAAAATTATC-
1 AAATTACTGAAATACCCTCGACTTGTAAAATTATTCAAA-TACCCCCAG-TTTACAAAATTA-CG
* * *
78273962 GAAATACCGTCGA-TTGTA
63 GAAATACCCTCAATTTATA
* * * * * * *
78273980 AAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAATACCCTCGACTTGT--AAAATTAC-C
1 AAATTACTGAAATACCCTCGACTTGTAAAATTATTCAAATACCC-CCAGTT-TACAAAATTACGG
* **
78274042 AAAGTACCCCCCGTTTATA
64 AAA-TACCCTCAATTTATA
** * * ** * ** **
78274061 AAATTACCCAAATATCCTCGATTTGTAAAATTA-TCGAAATACCATC-GATTGTAAAATTATTGA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTATTC-AAATACCCCCAGTTTACAAAATTACGGA
* *
78274124 AATACCCTCGATTTGTA
65 AATACCCTCAATTTATA
* ** * * * ** ** *
78274141 AAATTACCGAAATACTGTTGA-TTGTAAAATTACTGAAATA-CCCTTGATTTGTAAAATTACCGA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTATTCAAATACCCCCAG-TTTACAAAATTACGGA
* *
78274204 AATACCATCGAA--TGTA
65 AATACCCTC-AATTTATA
* * * *
78274220 AAATTACTGAAATACCCTCGATTTGTAAAATTATTGAAATACCCTCAGTTTGCAAAATTACGGAA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTATTCAAATACCCCCAGTTTACAAAATTACGGAA
78274285 ATACCCTCAATTTATA
66 ATACCCTCAATTTATA
* * *
78274301 AAATTACTAAAATACCCTCGACTTGTAAAATTA-TCAAAGTACCCCC-GATTTACAGAATTACTG
1 AAATTACTGAAATACCCTCGACTTGTAAAATTATTCAAA-TACCCCCAG-TTTACAAAATTACGG
*** ** *
78274364 TTTTACCCTTGATTTACA
64 AAATACCCTCAATTTATA
*
78274382 AAATTATTGAAATACCC
1 AAATTACTGAAATACCC
78274399 CTGTAGGGTA
Statistics
Matches: 329, Mismatches: 69, Indels: 40
0.75 0.16 0.09
Matches are distributed among these distances:
78 2 0.01
79 62 0.19
80 132 0.40
81 132 0.40
82 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (81 bp):
AAATTACTGAAATACCCTCGACTTGTAAAATTATTCAAATACCCCCAGTTTACAAAATTACGGAA
ATACCCTCAATTTATA
Found at i:78274397 original size:27 final size:27
Alignment explanation
Indices: 78273901--78274398 Score: 462
Period size: 27 Copynumber: 18.6 Consensus size: 27
78273891 TTAGTTTACC
* *
78273901 AAATTACTGAAATACCC-CCAGTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
78273927 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
*
78273954 AAATTA-TCGAAATACCGTCGA-TTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
78273980 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
78274007 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
78274034 AAATTAC-CAAAGTACCCCCCG-TTTATA
1 AAATTACTGAAA-TA-CCCTCGATTTGTA
** *
78274061 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
78274088 AAATTA-TCGAAATACCATCGA-TTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
78274114 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* ** *
78274141 AAATTACCGAAATACTGTTGA-TTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
78274167 AAATTACTGAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
78274194 AAATTACCGAAATACCATCGA-ATGTA
1 AAATTACTGAAATACCCTCGATTTGTA
78274220 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
78274247 AAATTATTGAAATACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* * *
78274274 AAATTACGGAAATACCCTCAATTTATA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
78274301 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * **
78274328 AAATTA-TCAAAGTACCCCCGATTTACA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* *** * **
78274355 GAATTACTGTTTTACCCTTGATTTACA
1 AAATTACTGAAATACCCTCGATTTGTA
*
78274382 AAATTATTGAAATACCC
1 AAATTACTGAAATACCC
78274399 CTGTAGGGTA
Statistics
Matches: 386, Mismatches: 67, Indels: 37
0.79 0.14 0.08
Matches are distributed among these distances:
25 3 0.01
26 114 0.30
27 255 0.66
28 14 0.04
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:78274506 original size:107 final size:107
Alignment explanation
Indices: 78274390--78274738 Score: 495
Period size: 107 Copynumber: 3.3 Consensus size: 107
78274380 CAAAATTATT
78274390 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCATTGTAAGGTAGAAATACCGAAATACCCTT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACC-TTGTAAGGTAGAAATACCGAAATACCCTT
* * *
78274455 -TAGGGTAGAAATATCGATATACCCTTGTAGGGTAGAAATACC
65 GTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACC
* * * *
78274497 GAAATACCCCTGTATGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCTT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATA-CCTTGTAAGGTAGAAATACCGAAATACCCTT
* *
78274562 GTAGGGTAAAAATACCGAAATACCCCTGTAGGGTAGAAATATC
65 GTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACC
* * *
78274605 GAAATACCCTTGTAGGGTAGAATTACTGAAATACCCTGT-AGGATAGAAATACCGAAATACCCTT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCTTGTAAGG-TAGAAATACCGAAATACCCTT
* *
78274669 GTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTACC
65 GTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACC
* * * *
78274712 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
78274739 ATTTTGCCCT
Statistics
Matches: 217, Mismatches: 22, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
106 2 0.01
107 145 0.67
108 70 0.32
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (107 bp):
GAAATACCCCTGTAGGGTAGAATTACCGAAATACCTTGTAAGGTAGAAATACCGAAATACCCTTG
TAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACC
Found at i:78274738 original size:27 final size:27
Alignment explanation
Indices: 78274390--78274734 Score: 471
Period size: 27 Copynumber: 12.9 Consensus size: 27
78274380 CAAAATTATT
* *
78274390 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* *
78274417 GAAATACCATTGTAAGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
*
78274444 GAAATACCCTT-TAGGGTAGAAATATC
1 GAAATACCCTTGTAGGGTAGAAATACC
*
78274470 GATATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* * * *
78274497 GAAATACCCCTGTATGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAAATACC
78274524 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* *
78274551 AAAATACCCTTGTAGGGTAAAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* *
78274578 GAAATACCCCTGTAGGGTAGAAATATC
1 GAAATACCCTTGTAGGGTAGAAATACC
* *
78274605 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAAATACC
*
78274632 GAAATACCC-TGTAGGATAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
78274658 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* * *
78274685 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAAATACC
* *
78274712 GAGATACCCTTGTGGGGTA-AAAT
1 GAAATACCCTTGTAGGGTAGAAAT
78274735 TACCATTTTG
Statistics
Matches: 276, Mismatches: 40, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
26 49 0.18
27 227 0.82
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAAATACC
Found at i:78274748 original size:27 final size:27
Alignment explanation
Indices: 78274718--78274781 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
78274708 TACCGAGATA
*
78274718 CCCTTGTGGGGTAAAATTACCATTTTG
1 CCCTTGTGGGGTAAAATGACCATTTTG
* * *
78274745 CCCTTAG-GGTGTTAAATGACTATTTTG
1 CCCTT-GTGGGGTAAAATGACCATTTTG
78274772 CCCTTGTGGG
1 CCCTTGTGGG
78274782 CAAGTGACTG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
26 1 0.03
27 28 0.93
28 1 0.03
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.38
Consensus pattern (27 bp):
CCCTTGTGGGGTAAAATGACCATTTTG
Found at i:78277200 original size:27 final size:27
Alignment explanation
Indices: 78277102--78277191 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
78277092 TTTAGTTTAC
* *
78277102 TAAAATTACTGAAATACCCT-TAGTTTG
1 TAAAATTACTGAAATACCCTCGA-CTTG
* *
78277129 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGACTTG
*
78277156 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCCTCGACTTG
78277183 TAAAATTAC
1 TAAAATTAC
78277192 CAAAGTACCC
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 56 0.98
28 1 0.02
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGACTTG
Found at i:78277201 original size:54 final size:54
Alignment explanation
Indices: 78277102--78277208 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 54
78277092 TTTAGTTTAC
* * *
78277102 TAAAATTACTGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* *
78277156 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACTGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
78277209 ACAGAATTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
53 8 0.17
54 38 0.83
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (54 bp):
TAAAATTACTGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:78277216 original size:27 final size:27
Alignment explanation
Indices: 78277197--78277515 Score: 314
Period size: 27 Copynumber: 11.8 Consensus size: 27
78277187 ATTACCAAAG
*
78277197 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
78277224 TACCCCCGATTTACATAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
78277251 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* **
78277278 TACCCTCGATTTACAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * * *
78277305 TACCCTCGATTTATAAAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
78277332 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
78277359 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
** *
78277386 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
78277413 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
** * **
78277440 TACCGTCGATTTATAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * ** **
78277467 TTCTCTTGATTTACAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
78277494 TACCCTCGATTTACAAAATTAC
1 TACCCCCGATTTACAGAATTAC
78277516 AGAAATACCC
Statistics
Matches: 250, Mismatches: 42, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 250 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCCCGATTTACAGAATTACCGTTT
Found at i:78277217 original size:54 final size:54
Alignment explanation
Indices: 78277097--78277217 Score: 129
Period size: 54 Copynumber: 2.2 Consensus size: 54
78277087 AATACTTTAG
* * *
78277097 TTTACTAAAATTACTGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGA
1 TTTAC-AAAATTACTGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGA
** * *
78277152 TTTGTAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGA
1 TTTACAAAATTACTGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGA
*
78277206 TTTACAGAATTA
1 TTTACAAAATTA
78277218 TCGTTTTACC
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
53 8 0.15
54 43 0.80
55 3 0.06
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (54 bp):
TTTACAAAATTACTGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGA
Found at i:78277244 original size:54 final size:54
Alignment explanation
Indices: 78277197--78277515 Score: 435
Period size: 54 Copynumber: 5.9 Consensus size: 54
78277187 ATTACCAAAG
* * * *
78277197 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACT-GTTT
* *
78277251 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTT
*
78277305 TACCCTCGATTTATAAAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * *
78277359 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * *
78277413 TACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * * *
78277467 TTCTCTTGATTTACAGAATTA-CTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTATC-GTTTTACCCTCGATTTACAGAATTAC
78277516 AGAAATACCC
Statistics
Matches: 238, Mismatches: 25, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
53 1 0.00
54 236 0.99
55 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:78277269 original size:81 final size:80
Alignment explanation
Indices: 78277197--78277515 Score: 390
Period size: 81 Copynumber: 3.9 Consensus size: 80
78277187 ATTACCAAAG
* * *
78277197 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTATCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTA-CGTTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATT
78277262 TACAAAATTACCGTTT
65 TACAAAATTACCGTTT
* *
78277278 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTATCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTAC-GTTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATT
* *
78277343 TACAGAATTACTGTTT
65 TACAAAATTACCGTTT
* * * *
78277359 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTA-CTGTTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTA-CGTTTTACCCTCGATTTACAAAATTATC-GTTTTACCCTCGAT
*
78277423 TTACAAAATTATCGTTT
64 TTACAAAATTACCGTTT
* * * * * * * *
78277440 TACCGTCGATTTATAGAATTACTATTTTTCTCTTGATTTACAGAATTA-CTATTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTAC-GTTTTACCCTCGATTTACAAAATTATC-GTTTTACCCTCGAT
78277504 TTACAAAATTAC
64 TTACAAAATTAC
78277516 AGAAATACCC
Statistics
Matches: 211, Mismatches: 23, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
80 3 0.01
81 207 0.98
82 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (80 bp):
TACCCTCGATTTACAGAATTACGTTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTT
ACAAAATTACCGTTT
Found at i:78277524 original size:27 final size:27
Alignment explanation
Indices: 78277494--78277579 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
78277484 ATTACTATTT
*
78277494 TACCCTCGATTTACAAAATTA-CAGAAA
1 TACCCTCAATTTACAAAATTACCA-AAA
**
78277521 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAA
* **
78277548 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-AATTTACAAAATTACCAAAA
78277575 TACCC
1 TACCC
78277580 ATGGTTTGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.02
27 50 0.94
28 2 0.04
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCAAAA
Found at i:78277566 original size:54 final size:53
Alignment explanation
Indices: 78277508--78277634 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 53
78277498 CTCGATTTAC
* **
78277508 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGT-TTGT
1 AAAATTACAGAAATACCCT-AATTTGAAAAATTACCAAAATACCCCT-GTAGGGT
** *
78277562 AAAATTACCA-AAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTA-CAGAAATACCC-TAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
*
78277616 AAAATTACTGAAATACCCT
1 AAAATTACAGAAATACCCT
78277635 TGTGGGGTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
53 4 0.06
54 55 0.89
55 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACAGAAATACCCTAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
Found at i:78277586 original size:27 final size:27
Alignment explanation
Indices: 78277508--78277606 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
78277498 CTCGATTTAC
*
78277508 AAAATTA-CAGAAATACCC-TCAATTTGT
1 AAAATTACCA-AAATACCCAT-AGTTTGT
*
78277535 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCATAGTTTGT
* *
78277562 AAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACCAAAATACCCATAGTTTGT
*
78277589 AAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
78277607 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 62 0.95
28 3 0.05
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCATAGTTTGT
Found at i:78277619 original size:27 final size:27
Alignment explanation
Indices: 78277533--78277652 Score: 109
Period size: 27 Copynumber: 4.4 Consensus size: 27
78277523 CCCTCAATTT
**
78277533 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* * **
78277560 GTAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* *
78277587 GAAAAATTACTAAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
** *
78277614 GTAAAATTACTGAAATA-CCCTTGTGGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
78277641 GTAAAATTACCA
1 GTAAAATTACCA
78277653 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.08
27 73 0.92
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTGG
Found at i:78278302 original size:28 final size:28
Alignment explanation
Indices: 78278270--78278338 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
78278260 GCGTAGATCA
78278270 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
78278298 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
78278326 CGATA-TACCCCTA
1 CGAAATTACCCCTA
78278339 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:78279842 original size:22 final size:22
Alignment explanation
Indices: 78279790--78279854 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
78279780 TTAAAGCCTT
* *
78279790 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTATGTGCCAAC
*
78279812 CT-ACATATGGCTATGTGCCAAC
1 CTGA-TTATGGCTATGTGCCAAC
*
78279834 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTATGTGCCAA
78279855 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTATGTGCCAAC
Found at i:78280193 original size:6 final size:6
Alignment explanation
Indices: 78280184--78280265 Score: 53
Period size: 6 Copynumber: 13.3 Consensus size: 6
78280174 TTGCATTCAC
*
78280184 ATTCTG ATTCTG ATTCTG -TTACTTG ATTCTG ATTCTG -TCACCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG AT--TCTG ATTCTG
* * * *
78280234 GTTCTA ATTCTT ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
78280266 AATGTTTCTT
Statistics
Matches: 59, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
5 4 0.07
6 45 0.76
7 7 0.12
8 3 0.05
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:78280212 original size:19 final size:19
Alignment explanation
Indices: 78280187--78280238 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
78280177 CATTCACATT
*
78280187 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTCAC
*
78280206 TTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
*
78280225 CTGATTCTGGTTCT
1 CTGATTCTGATTCT
78280239 AATTCTTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.13, C:0.21, G:0.17, T:0.48
Consensus pattern (19 bp):
CTGATTCTGATTCTGTCAC
Found at i:78281744 original size:42 final size:42
Alignment explanation
Indices: 78281681--78281822 Score: 131
Period size: 42 Copynumber: 3.4 Consensus size: 42
78281671 CATGTAGGTG
* **
78281681 TCGATGCCATGTCCCAGACATGACCTTACACGGGACCTCATA
1 TCGATGTCATGTCCCAGACATGACCTTACACGAAACCTCATA
* ** *
78281723 TCGATGTCATGTCCCATACATGGTCTTACACGAAATCTCATA
1 TCGATGTCATGTCCCAGACATGACCTTACACGAAACCTCATA
* * * ** * *
78281765 TCAATGTCATATCCCAGATATGGTCTTACATGAAATCTCATA
1 TCGATGTCATGTCCCAGACATGACCTTACACGAAACCTCATA
* * *
78281807 TCAATGCCATATCCCA
1 TCGATGTCATGTCCCA
78281823 AATATGGTCT
Statistics
Matches: 87, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 87 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (42 bp):
TCGATGTCATGTCCCAGACATGACCTTACACGAAACCTCATA
Found at i:78281762 original size:90 final size:90
Alignment explanation
Indices: 78281598--78281763 Score: 208
Period size: 90 Copynumber: 1.8 Consensus size: 90
78281588 ATGCCAAAGT
* * * * * * * *
78281598 CATGTCCCAGACATGGCCTTACATGGGTCTATATATCGATGTGATATCCCAGATATTGTCTTATA
1 CATGTCCCAGACATGACCTTACACGGGCCTACATATCGATGTCATATCCCAGACATGGTCTTACA
* *
78281663 TGAAGTCTCATGTAGGTGTCGATGC
66 CGAAATCTCATGTAGGTGTCGATGC
* *
78281688 CATGTCCCAGACATGACCTTACACGGGACCT-CATATCGATGTCATGTCCCATACATGGTCTTAC
1 CATGTCCCAGACATGACCTTACACGGG-CCTACATATCGATGTCATATCCCAGACATGGTCTTAC
78281752 ACGAAATCTCAT
65 ACGAAATCTCAT
78281764 ATCAATGTCA
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
90 61 0.97
91 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (90 bp):
CATGTCCCAGACATGACCTTACACGGGCCTACATATCGATGTCATATCCCAGACATGGTCTTACA
CGAAATCTCATGTAGGTGTCGATGC
Found at i:78281828 original size:42 final size:42
Alignment explanation
Indices: 78281717--78281837 Score: 179
Period size: 42 Copynumber: 2.9 Consensus size: 42
78281707 TACACGGGAC
* * * * *
78281717 CTCATATCGATGTCATGTCCCATACATGGTCTTACACGAAAT
1 CTCATATCAATGTCATATCCCAAATATGGTCTTACATGAAAT
*
78281759 CTCATATCAATGTCATATCCCAGATATGGTCTTACATGAAAT
1 CTCATATCAATGTCATATCCCAAATATGGTCTTACATGAAAT
*
78281801 CTCATATCAATGCCATATCCCAAATATGGTCTTACAT
1 CTCATATCAATGTCATATCCCAAATATGGTCTTACAT
78281838 TGGCACACAT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (42 bp):
CTCATATCAATGTCATATCCCAAATATGGTCTTACATGAAAT
Found at i:78283249 original size:37 final size:37
Alignment explanation
Indices: 78283190--78283295 Score: 167
Period size: 37 Copynumber: 2.9 Consensus size: 37
78283180 AGCTCAGACG
* *
78283190 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
78283227 AAATCTCTACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
78283264 TAATCTCCACACGTAGTCATTGGGTCTTACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
78283296 AGAATATATT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:78283568 original size:102 final size:100
Alignment explanation
Indices: 78283447--78283631 Score: 284
Period size: 102 Copynumber: 1.8 Consensus size: 100
78283437 CATCGCCTAC
*
78283447 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT-GA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAG-
78283511 CCATTCGGCTTTACCACATATGCATATCTCATATATAT
63 CCATTCGGCTTTACCACATATGCATATCTCATATATAT
* *
78283549 ATATTTCACA-TTGACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCC
1 ATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCC
*
78283613 ATTCGGCTTTACCATATAT
65 ATTCGGCTTTACCACATAT
78283632 ATGCATGTTC
Statistics
Matches: 77, Mismatches: 4, Indels: 6
0.89 0.05 0.07
Matches are distributed among these distances:
100 35 0.45
101 3 0.04
102 39 0.51
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (100 bp):
ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCGGCTTTACCACATATGCATATCTCATATATAT
Found at i:78283569 original size:52 final size:50
Alignment explanation
Indices: 78283447--78283631 Score: 270
Period size: 52 Copynumber: 3.7 Consensus size: 50
78283437 CATCGCCTAC
* *
78283447 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCATATAT
78283497 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATATATAT
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATGCATATCTC--ATATAT
*
78283549 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTC--ATAC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATGCATATCTCATATAT
*
78283597 ATATTTCACATTAGCCATTCGGCTTTACCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATAT
78283632 ATGCATGTTC
Statistics
Matches: 127, Mismatches: 4, Indels: 10
0.90 0.03 0.07
Matches are distributed among these distances:
48 35 0.28
49 2 0.02
50 40 0.31
52 50 0.39
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (50 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCATATAT
Found at i:78283666 original size:47 final size:47
Alignment explanation
Indices: 78283554--78283795 Score: 258
Period size: 47 Copynumber: 5.1 Consensus size: 47
78283544 TATATATATT
* * * *
78283554 TCACATTGACCATTCGGCTTTACCAC--ATATGCATATCTCATACATAT-T
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGT-TC--ACAT-TCA
* * * *
78283602 TCACATTAGCCATTCGGCTTTACCATATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
* * *
78283649 CCACATTGGCCATTCGGCCTTATCACACATATGCAT-TCTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGT-TCACATTCA
*
78283696 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
* * * **
78283743 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
78283790 TCACAT
1 TCACAT
78283796 AAAATCCTAA
Statistics
Matches: 170, Mismatches: 19, Indels: 11
0.85 0.09 0.05
Matches are distributed among these distances:
46 2 0.01
47 133 0.78
48 24 0.14
49 2 0.01
50 9 0.05
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTACCACATATATGCATGTTCACATTCA
Found at i:78283674 original size:25 final size:25
Alignment explanation
Indices: 78283646--78283721 Score: 72
Period size: 23 Copynumber: 3.2 Consensus size: 25
78283636 ATGTTCATAT
78283646 TCACCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGGCCTTA
* *
78283671 TCA-CACATAT-G-CATTC-TCACAT-
1 TCACCACAT-TGGCCATTCGGC-CTTA
*
78283693 TCATCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGGCCTTA
78283718 TCAC
1 TCAC
78283722 ATATATGCAT
Statistics
Matches: 39, Mismatches: 5, Indels: 14
0.67 0.09 0.24
Matches are distributed among these distances:
22 5 0.13
23 13 0.33
24 13 0.33
25 8 0.21
ACGTcount: A:0.24, C:0.34, G:0.12, T:0.30
Consensus pattern (25 bp):
TCACCACATTGGCCATTCGGCCTTA
Found at i:78283686 original size:23 final size:23
Alignment explanation
Indices: 78283659--78283731 Score: 62
Period size: 23 Copynumber: 3.1 Consensus size: 23
78283649 CCACATTGGC
78283659 CATTCGGCCTTATCACACATATG
1 CATTCGGCCTTATCACACATATG
* *
78283682 CATTC-TCACAT-TCATCACAT-TGG
1 CATTCGGC-CTTATCA-CACATAT-G
*
78283705 CCATTCGGCCTTATCACATATATG
1 -CATTCGGCCTTATCACACATATG
78283729 CAT
1 CAT
78283732 GTTCACATTC
Statistics
Matches: 38, Mismatches: 5, Indels: 14
0.67 0.09 0.25
Matches are distributed among these distances:
22 5 0.13
23 16 0.42
24 12 0.32
25 5 0.13
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (23 bp):
CATTCGGCCTTATCACACATATG
Found at i:78283712 original size:94 final size:93
Alignment explanation
Indices: 78283555--78283795 Score: 290
Period size: 94 Copynumber: 2.5 Consensus size: 93
78283545 ATATATATTT
* * *
78283555 CACATTGACCATTCGGCTTTA-CCACATATGCATATCTCATACATAT-TTCACATTAGCCATTCG
1 CACATTGGCCATTCGGCCTTATCCACATATGCAT-TCTC--ACAT-TCATCACATTAGCCATTCG
* * *
78283618 GCTTTACCATATATATGCATGTTCATATTCAC
62 GCCTTACCACATATATGCATGTTCACATTCAC
*
78283650 CACATTGGCCATTCGGCCTTATCACACATATGCATTCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATC-CACATATGCATTCTCACATTCATCACATTAGCCATTCGGCC
* *
78283715 TTATCACATATATGCATGTTCACATTCAT
65 TTACCACATATATGCATGTTCACATTCAC
* * *
78283744 CACATTGGCCATTCGGCCTTATCTCATATATACACAT-TCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATC-CACATATGCA-TTCTCACATTCATCACAT
78283796 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
93 1 0.01
94 92 0.71
95 20 0.16
96 5 0.04
97 11 0.09
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (93 bp):
CACATTGGCCATTCGGCCTTATCCACATATGCATTCTCACATTCATCACATTAGCCATTCGGCCT
TACCACATATATGCATGTTCACATTCAC
Found at i:78289898 original size:47 final size:47
Alignment explanation
Indices: 78289839--78289956 Score: 200
Period size: 47 Copynumber: 2.5 Consensus size: 47
78289829 TGGCACTAAG
78289839 ACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAA
1 ACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAA
* *
78289886 ACAAGGATACCATGTAAGACTATGTTTGGAACATGGCATTTGGTAAG
1 ACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAA
* *
78289933 ATAAGGATATCATGTAAGACCATG
1 ACAAGGATACCATGTAAGACCATG
78289957 CCAAGGCATG
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
ACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAA
Found at i:78290051 original size:107 final size:109
Alignment explanation
Indices: 78289929--78290238 Score: 387
Period size: 107 Copynumber: 2.9 Consensus size: 109
78289919 TGGCATTTGG
*
78289929 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGATAAGGA
1 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGTAAGGA
* * * * *
78289994 TATCATGTAAG-GCTTGCCAAGGCATGGCATTGATAAGTT-TTA
66 TATCATGTAAGACCATGCCAAGACATGGCATTAATAAGTTACTA
* * *
78290036 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATTAGGCAAGAA
1 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGTAAGGA
* * *
78290101 AATCATGTAAGACCATGTCAAGACATGGCATTAATGAGTTACTA
66 TATCATGTAAGACCATGCCAAGACATGGCATTAATAAGTTACTA
** * *
78290145 TAAGGCA-AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGTAAG
1 TAA-G-ATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGTAAG
* * * *
78290207 GATACCACGTAAGACCATGTCAAGACAAGGCA
64 GATATCATGTAAGACCATGCCAAGACATGGCA
78290239 ATGGTAAGTT
Statistics
Matches: 176, Mismatches: 23, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
107 71 0.40
108 57 0.32
109 42 0.24
110 5 0.03
111 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (109 bp):
TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGTAAGGA
TATCATGTAAGACCATGCCAAGACATGGCATTAATAAGTTACTA
Found at i:78290171 original size:55 final size:53
Alignment explanation
Indices: 78289943--78290238 Score: 230
Period size: 53 Copynumber: 5.5 Consensus size: 53
78289933 ATAAGGATAT
* * *
78289943 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAA-G-ATAAGGATAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA-AAGG-T-C
* * * * * *
78289997 CATGTAAG-GCTTGCCAAGGCATGGCATTGATAAGTTTTATAA-G-ATAAGGATAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA-AAGG-T-C
* * * **
78290050 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATTAGGCAAGAAAAT-
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC-A-AAGGTC
* *
78290104 CATGTAAGACCATGTCAAGACATGGCATTAATGAGTTACTATAAGGCAAAGGTCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGCAAAGGT-C
* * *
78290159 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGG-TAAGGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGG-T-C
* * *
78290212 CACGTAAGACCATGTCAAGACAAGGCA
1 CATGTAAGACCATGCCAAGACATGGCA
78290239 ATGGTAAGTT
Statistics
Matches: 207, Mismatches: 27, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
52 4 0.02
53 84 0.41
54 73 0.35
55 42 0.20
56 1 0.00
57 3 0.01
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.24
Consensus pattern (53 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGGTC
Found at i:78290250 original size:53 final size:54
Alignment explanation
Indices: 78289929--78290249 Score: 371
Period size: 54 Copynumber: 6.0 Consensus size: 54
78289919 TGGCATTTGG
78289929 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
1 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* * *
78289983 TAAGATAAGGATATCATGTAAG-GCTTGCCAAGGCATGGCATTGATAAGTTTTA
1 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
78290036 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
1 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* ** * * * * * *
78290090 TTAGGCAAGAAAATCATGTAAGACCATGTCAAGACATGGCATTAATGAGTTACTA
1 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTA
** * *
78290145 TAAGGCA-AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-A
1 TAA-G-ATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* * * * * * * *
78290198 TAAGGTAAGGATACCACGTAAGACCATGTCAAGACAAGGCAATGGTAAGTTC
1 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTC
78290250 AAAAAGGAAA
Statistics
Matches: 228, Mismatches: 33, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
52 5 0.02
53 88 0.39
54 93 0.41
55 38 0.17
56 4 0.02
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.25
Consensus pattern (54 bp):
TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
Found at i:78294860 original size:32 final size:33
Alignment explanation
Indices: 78294824--78294891 Score: 120
Period size: 32 Copynumber: 2.1 Consensus size: 33
78294814 CATTAGAGAG
78294824 TATGAGGTTAATGATAAAATAAGGTCAATTA-T
1 TATGAGGTTAATGATAAAATAAGGTCAATTACT
*
78294856 TATGAGGTTAATGATAAAATAAGGTCAGTTACT
1 TATGAGGTTAATGATAAAATAAGGTCAATTACT
78294889 TAT
1 TAT
78294892 CAGTAGGTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 30 0.88
33 4 0.12
ACGTcount: A:0.41, C:0.04, G:0.19, T:0.35
Consensus pattern (33 bp):
TATGAGGTTAATGATAAAATAAGGTCAATTACT
Found at i:78296374 original size:12 final size:12
Alignment explanation
Indices: 78296357--78296383 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
78296347 TTATTATGCA
78296357 ATTATTGTTATT
1 ATTATTGTTATT
78296369 ATTATTGTTATT
1 ATTATTGTTATT
78296381 ATT
1 ATT
78296384 GAGTTATGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (12 bp):
ATTATTGTTATT
Found at i:78296582 original size:45 final size:45
Alignment explanation
Indices: 78296533--78296706 Score: 201
Period size: 45 Copynumber: 3.8 Consensus size: 45
78296523 ATTGAAGGTT
* *
78296533 AAGGATACCATGCAAGACCATGTCAAGACATGGCATTGATAAGGC
1 AAGGATCCCATGTAAGACCATGTCAAGACATGGCATTGATAAGGC
* * * **
78296578 AAGGATCCCCGTGTAAGACCATGTCAAGACATGGAATTAGCAT-TGATT
1 AAGGAT-CCCATGTAAGACCATGTCAAGACATGGCATT-G-ATAAG-GC
78296626 AAGGA-CTCCATGTAAGACCATGTCAAGACATGGCATCTG-TAAGGC
1 AAGGATC-CCATGTAAGACCATGTCAAGACATGGCAT-TGATAAGGC
*
78296671 AAGGATCCCGTGTAAGACCATGTCAAGACATGGCAT
1 AAGGATCCCATGTAAGACCATGTCAAGACATGGCAT
78296707 CGGCATTGAT
Statistics
Matches: 108, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
45 40 0.37
46 30 0.28
47 30 0.28
48 8 0.07
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (45 bp):
AAGGATCCCATGTAAGACCATGTCAAGACATGGCATTGATAAGGC
Found at i:78296655 original size:47 final size:46
Alignment explanation
Indices: 78296531--78296735 Score: 179
Period size: 47 Copynumber: 4.4 Consensus size: 46
78296521 GAATTGAAGG
* *
78296531 TTAAGGA-TACCATGCAAGACCATGTCAAGACATGGCATTG-A-TAA
1 TTAAGGACT-CCATGTAAGACCATGTCAAGACATGGCATTGCATTGA
** * * *
78296575 GGCAAGGATCCCCGTGTAAGACCATGTCAAGACATGGAATTAGCATTGA
1 -TTAAGGA-CTCCATGTAAGACCATGTCAAGACATGGCATT-GCATTGA
* *
78296624 TTAAGGACTCCATGTAAGACCATGTCAAGACATGGCATCTGTA-AG-
1 TTAAGGACTCCATGTAAGACCATGTCAAGACATGGCAT-TGCATTGA
** * *
78296669 GCAAGGA-TCCCGTGTAAGACCATGTCAAGACATGGCATCGGCATTGA
1 TTAAGGACT-CCATGTAAGACCATGTCAAGACATGGCAT-TGCATTGA
*
78296716 TTAAGTACTCCATGTAAGAC
1 TTAAGGACTCCATGTAAGAC
78296736 TACATCAAGA
Statistics
Matches: 126, Mismatches: 24, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
44 1 0.01
45 41 0.33
46 29 0.23
47 45 0.36
48 8 0.06
49 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.22
Consensus pattern (46 bp):
TTAAGGACTCCATGTAAGACCATGTCAAGACATGGCATTGCATTGA
Found at i:78296726 original size:92 final size:93
Alignment explanation
Indices: 78296531--78296735 Score: 326
Period size: 92 Copynumber: 2.2 Consensus size: 93
78296521 GAATTGAAGG
*
78296531 TTAAGGA-TACCATGCAAGACCATGTCAAGACATGGCATTGATAAGGCAAGGATCCCCGTGTAAG
1 TTAAGGACT-CCATGTAAGACCATGTCAAGACATGGCATTGATAAGGCAAGGATCCCCGTGTAAG
*
78296595 ACCATGTCAAGACATGGAATTAGCATTGA
65 ACCATGTCAAGACATGGAATCAGCATTGA
78296624 TTAAGGACTCCATGTAAGACCATGTCAAGACATGGCATCTG-TAAGGCAAGGAT-CCCGTGTAAG
1 TTAAGGACTCCATGTAAGACCATGTCAAGACATGGCAT-TGATAAGGCAAGGATCCCCGTGTAAG
* *
78296687 ACCATGTCAAGACATGGCATCGGCATTGA
65 ACCATGTCAAGACATGGAATCAGCATTGA
*
78296716 TTAAGTACTCCATGTAAGAC
1 TTAAGGACTCCATGTAAGAC
78296736 TACATCAAGA
Statistics
Matches: 105, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
92 55 0.52
93 47 0.45
94 3 0.03
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.22
Consensus pattern (93 bp):
TTAAGGACTCCATGTAAGACCATGTCAAGACATGGCATTGATAAGGCAAGGATCCCCGTGTAAGA
CCATGTCAAGACATGGAATCAGCATTGA
Found at i:78296821 original size:47 final size:47
Alignment explanation
Indices: 78296767--78296975 Score: 319
Period size: 47 Copynumber: 4.4 Consensus size: 47
78296757 CACTAAGAAG
78296767 AGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATA
1 AGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATA
* * *
78296814 ATGATACCATGTAAAACCATGTTTGGAACATGGCATTTGGTAAGACA
1 AGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATA
* * *
78296861 TGGATACCATGTAAGACCATGTTTGGAACGTGGCATTTGGTAAGACA
1 AGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATA
* * *
78296908 AGGATACCATGTAAGACCGTGTTTGGAACATAGCGTTTGGTAAGATA
1 AGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATA
* *
78296955 AGGATATCATGTAAGGCCATG
1 AGGATACCATGTAAGACCATG
78296976 CCAAGGCATG
Statistics
Matches: 146, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 146 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (47 bp):
AGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATA
Found at i:78297012 original size:54 final size:54
Alignment explanation
Indices: 78296948--78297269 Score: 403
Period size: 54 Copynumber: 6.0 Consensus size: 54
78296938 TAGCGTTTGG
* *
78296948 TAAGATAAGGATATCATGTAAGGCCATGCCAAGGCATGGCATTGATAAGTTCTA
1 TAAGACAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* *
78297002 TAAGATAAGGATATCATGTAAGACCATTCCAAGGCATGGCATTGATAAGTTCTA
1 TAAGACAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* *
78297056 TAAGATAAGGATATCATGTAAGACCATGCCAAGGTATGGCATTGATAAGTTCTA
1 TAAGACAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* * * * * *
78297110 TAAGGCAAGGAAATTATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTA
1 TAAGACAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTA
* * ** * *
78297165 TAAGGCAAGGGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-A
1 TAAGACAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
** * * * * *
78297218 TAAGACAAGGATAAGACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 TAAGACAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTC
78297270 AAAAAGGAAA
Statistics
Matches: 237, Mismatches: 30, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
53 43 0.18
54 148 0.62
55 46 0.19
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (54 bp):
TAAGACAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
Found at i:78299887 original size:28 final size:28
Alignment explanation
Indices: 78299855--78299969 Score: 99
Period size: 29 Copynumber: 4.0 Consensus size: 28
78299845 TACCTGTATC
*
78299855 TGGCCCACTAAGCCC-AATCATATTCATA
1 TGGCCCATTAAGCCCAAATCA-ATTCATA
**
78299883 TGGCCCATTAAGCCCAAATCACCTCTATA
1 TGGCCCATTAAGCCCAAATCAATTC-ATA
* *
78299912 TGGCCCATTAGGCCCAAATCAAATTTATA
1 TGGCCCATTAAGCCCAAATC-AATTCATA
* * * *
78299941 TGGTCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAAGCCCAAATCA-ATTCATA
78299969 T
1 T
78299970 TCATGCTCAC
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
27 1 0.01
28 26 0.36
29 43 0.60
30 2 0.03
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAAGCCCAAATCAATTCATA
Found at i:78299912 original size:29 final size:28
Alignment explanation
Indices: 78299846--78299932 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 28
78299836 AATTTCACAT
* *
78299846 ACCTGTATCTGGCCCACTAAGCCC-AATC
1 ACCT-TATATGGCCCATTAAGCCCAAATC
**
78299874 ATATTCATATGGCCCATTAAGCCCAAATC
1 ACCTT-ATATGGCCCATTAAGCCCAAATC
*
78299903 ACCTCTATATGGCCCATTAGGCCCAAATC
1 ACCT-TATATGGCCCATTAAGCCCAAATC
78299932 A
1 A
78299933 AATTTATATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
27 1 0.02
28 18 0.37
29 29 0.59
30 1 0.02
ACGTcount: A:0.30, C:0.33, G:0.13, T:0.24
Consensus pattern (28 bp):
ACCTTATATGGCCCATTAAGCCCAAATC
Found at i:78299940 original size:29 final size:29
Alignment explanation
Indices: 78299855--78299943 Score: 108
Period size: 29 Copynumber: 3.1 Consensus size: 29
78299845 TACCTGTATC
* * *
78299855 TGGCCCACTAAGCCC-AATCATATTCATA
1 TGGCCCATTAAGCCCAAATCAAATTTATA
** *
78299883 TGGCCCATTAAGCCCAAATCACCTCTATA
1 TGGCCCATTAAGCCCAAATCAAATTTATA
*
78299912 TGGCCCATTAGGCCCAAATCAAATTTATA
1 TGGCCCATTAAGCCCAAATCAAATTTATA
78299941 TGG
1 TGG
78299944 TCCGTTAGGC
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
28 14 0.27
29 37 0.73
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAAGCCCAAATCAAATTTATA
Found at i:78299951 original size:29 final size:29
Alignment explanation
Indices: 78299855--78299956 Score: 107
Period size: 29 Copynumber: 3.6 Consensus size: 29
78299845 TACCTGTATC
* * * *
78299855 TGGCCCACTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCAAATTTATA
* ** *
78299883 TGGCCCATTAAGCCCAAATCACCTCTATA
1 TGGCCCATTAGGCCCAAATCAAATTTATA
78299912 TGGCCCATTAGGCCCAAATCAAATTTATA
1 TGGCCCATTAGGCCCAAATCAAATTTATA
* *
78299941 TGGTCCGTTAGGCCCA
1 TGGCCCATTAGGCCCA
78299957 GTCACATTCA
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 14 0.23
29 48 0.77
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCAAATTTATA
Found at i:78300201 original size:16 final size:16
Alignment explanation
Indices: 78300180--78300222 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
78300170 GTAGCCAAAC
**
78300180 TTTCGGCTTTTTGGCA
1 TTTCGGCTTTTCAGCA
78300196 TTTCGGCTTTTCAGCA
1 TTTCGGCTTTTCAGCA
*
78300212 TTTTGGCTTTT
1 TTTCGGCTTTT
78300223 GTCGATACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.07, C:0.19, G:0.21, T:0.53
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:78301509 original size:16 final size:16
Alignment explanation
Indices: 78301485--78301516 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
78301475 AAGTTCGGGA
78301485 TTTCAAGATTTTTGGG
1 TTTCAAGATTTTTGGG
*
78301501 TTTCGAGATTTTTGGG
1 TTTCAAGATTTTTGGG
78301517 GCGTTACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.28, T:0.50
Consensus pattern (16 bp):
TTTCAAGATTTTTGGG
Found at i:78304476 original size:29 final size:29
Alignment explanation
Indices: 78304430--78304533 Score: 115
Period size: 29 Copynumber: 3.7 Consensus size: 29
78304420 GACCCACTAA
* *
78304430 GCCC-AATCATATTCATATGGCCCATTAG
1 GCCCAAATCACATTTATATGGCCCATTAG
* *
78304458 GCCCAAATCA-TTTGTATATGGCCTATTAG
1 GCCCAAATCACATT-TATATGGCCCATTAG
*
78304487 GCCCAAATCACATTTATATGGCCCGTTAG
1 GCCCAAATCACATTTATATGGCCCATTAG
* *
78304516 GCCC-AGTCACATTCATAT
1 GCCCAAATCACATTTATAT
78304534 TCATACTCAC
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
28 18 0.28
29 45 0.69
30 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (29 bp):
GCCCAAATCACATTTATATGGCCCATTAG
Found at i:78310576 original size:30 final size:31
Alignment explanation
Indices: 78310535--78310595 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
78310525 TTTCTGAGCC
*
78310535 TAGGGGAAAAATCATAA-TTTTGCAAAGTTT
1 TAGGGGAAAAATCATAATTTTTCCAAAGTTT
* **
78310565 TAGGGGCAAAATTGTAATTTTTCCAAAGTTT
1 TAGGGGAAAAATCATAATTTTTCCAAAGTTT
78310596 GAGTTAGGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 14 0.54
31 12 0.46
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (31 bp):
TAGGGGAAAAATCATAATTTTTCCAAAGTTT
Found at i:78311393 original size:47 final size:47
Alignment explanation
Indices: 78311341--78311462 Score: 192
Period size: 47 Copynumber: 2.6 Consensus size: 47
78311331 ATCAAGGCAC
78311341 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
78311388 TAAGACAATGG-TACCATGTAAGACCACGTTTGGAACATGGCATTTGG
1 TAAGACAA-GGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* * *
78311435 TAAGATAAGGATATCATGTAAGATCATG
1 TAAGACAAGGATACCATGTAAGACCATG
78311463 CCAAGACATG
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
46 2 0.03
47 64 0.94
48 2 0.03
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:78311506 original size:54 final size:53
Alignment explanation
Indices: 78311441--78311608 Score: 189
Period size: 54 Copynumber: 3.1 Consensus size: 53
78311431 TTGGTAAGAT
*
78311441 AAGGATATCATGTAAGATCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGA-CATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
78311495 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACT-TAAGGAA
1 AAGGATATCATGTAAGA-CATGCCAAGACATGGCATTGATGAGTT-CTATAAGG-C
** * *
78311550 AAGG-TCCCATGTAAGACTATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATATCATGTAAGAC-ATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
*
78311602 AATGATA
1 AAGGATA
78311609 CCACGAAAAA
Statistics
Matches: 95, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
52 3 0.03
53 8 0.08
54 78 0.82
55 6 0.06
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.24
Consensus pattern (53 bp):
AAGGATATCATGTAAGACATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:78314341 original size:71 final size:71
Alignment explanation
Indices: 78314257--78314419 Score: 301
Period size: 70 Copynumber: 2.3 Consensus size: 71
78314247 CGATTTGTCT
78314257 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
78314322 CTTTCA
66 CTTTCA
* *
78314328 CGTAGCTCTCTTGTCTACAT-GTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
78314392 CTTTCA
66 CTTTCA
78314398 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
78314420 GATACATCTC
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
70 68 0.76
71 21 0.24
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:78321603 original size:40 final size:39
Alignment explanation
Indices: 78321559--78321740 Score: 256
Period size: 39 Copynumber: 4.6 Consensus size: 39
78321549 GTTCAAAACA
* * ** * *
78321559 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
78321599 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
78321639 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
78321678 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
78321717 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
78321741 CTCGAACATT
Statistics
Matches: 131, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 91 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:78321670 original size:39 final size:39
Alignment explanation
Indices: 78321589--78321740 Score: 259
Period size: 39 Copynumber: 3.9 Consensus size: 39
78321579 TATGGTAACC
* * * *
78321589 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
78321629 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
78321668 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
78321707 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
78321741 CTCGAACATT
Statistics
Matches: 108, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
39 91 0.84
40 17 0.16
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:78324026 original size:13 final size:13
Alignment explanation
Indices: 78324008--78324035 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
78323998 GTGCCATCTT
78324008 AATACTTGATTGA
1 AATACTTGATTGA
78324021 AATACTTGATTGA
1 AATACTTGATTGA
78324034 AA
1 AA
78324036 ACTATTGTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (13 bp):
AATACTTGATTGA
Found at i:78329136 original size:39 final size:39
Alignment explanation
Indices: 78329055--78329206 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
78329045 TATGGTAACC
* * * *
78329055 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
78329095 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
78329134 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
78329173 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
78329207 CTCGAACATT
Statistics
Matches: 106, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:78331371 original size:36 final size:36
Alignment explanation
Indices: 78331331--78331403 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
78331321 TCTTTCTAGC
*
78331331 ATCTCTAGATTCAAAATCAGCTTTTCTTTTCTCTTT
1 ATCTCTAGATTCAAAATCAGCTTTGCTTTTCTCTTT
78331367 ATCTCTAGATTCAAAATCAGCTTTGCTTTTCTCTTT
1 ATCTCTAGATTCAAAATCAGCTTTGCTTTTCTCTTT
78331403 A
1 A
78331404 CTTAATTCTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.23, C:0.22, G:0.07, T:0.48
Consensus pattern (36 bp):
ATCTCTAGATTCAAAATCAGCTTTGCTTTTCTCTTT
Found at i:78333553 original size:42 final size:43
Alignment explanation
Indices: 78333444--78333600 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 43
78333434 AACAAGAACA
* * *
78333444 ATGCTGATGTCCCAGACGTGGTCTTACATGTAATTCGATATCG
1 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATCGATATCG
* *** *
78333487 AAGCCTCCGTCCCAGACAGGGTCTTACATG-AAATCAGATA-CG
1 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATC-GATATCG
* * * *
78333529 ATGCCGATGTCTCAGACTTGGTCTTACACGTAAATTTC-AAATCG
1 ATGCCGATGTCCCAGACATGGTCTTACATGTAAA--TCGATATCG
* *
78333573 ATGCCTG-TGTCCCAGACACGATCTTACA
1 ATGCC-GATGTCCCAGACATGGTCTTACA
78333601 CGATAATTTA
Statistics
Matches: 87, Mismatches: 21, Indels: 11
0.73 0.18 0.09
Matches are distributed among these distances:
42 28 0.32
43 32 0.37
44 24 0.28
45 3 0.03
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACATGGTCTTACATGTAAATCGATATCG
Found at i:78333599 original size:86 final size:85
Alignment explanation
Indices: 78333444--78333600 Score: 199
Period size: 86 Copynumber: 1.8 Consensus size: 85
78333434 AACAAGAACA
* * * * *
78333444 ATGCTGATGTCCCAGACGTGGTCTTACATGTAATTCGATATCGAAGCCTCCGTCCCAGACAGGGT
1 ATGCCGATGTCCCAGACGTGGTCTTACACGTAATTCGAAATCGAAGCCTCCGTCCCAGACACGAT
78333509 CTTACATGAAATCAGATACG
66 CTTACATGAAATCAGATACG
* * * **
78333529 ATGCCGATGTCTCAGACTTGGTCTTACACGTAAATTTC-AAATCGATGCCTGTGTCCCAGACACG
1 ATGCCGATGTCCCAGACGTGGTCTTACACGT-AA-TTCGAAATCGAAGCCTCCGTCCCAGACACG
78333593 ATCTTACA
64 ATCTTACA
78333601 CGATAATTTA
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
85 27 0.45
86 30 0.50
87 3 0.05
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (85 bp):
ATGCCGATGTCCCAGACGTGGTCTTACACGTAATTCGAAATCGAAGCCTCCGTCCCAGACACGAT
CTTACATGAAATCAGATACG
Found at i:78338737 original size:40 final size:40
Alignment explanation
Indices: 78338645--78338794 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
78338635 AATTGAATGA
* * * *
78338645 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAAT-T
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACATAC
* * *
78338684 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
78338725 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
78338764 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
78338795 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
38 3 0.03
39 31 0.34
40 54 0.59
41 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:78338808 original size:40 final size:40
Alignment explanation
Indices: 78338684--78338810 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
78338674 GCTGGAAATT
* * * * *
78338684 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
* * ** *
78338724 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
78338764 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
78338804 TATCCGG
1 TATCCGG
78338811 TTATGTTCCG
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
Found at i:78346748 original size:40 final size:40
Alignment explanation
Indices: 78346663--78346813 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
78346653 AATTGAATGA
* * *
78346663 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
78346703 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
78346744 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
78346783 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
78346814 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:78346827 original size:40 final size:40
Alignment explanation
Indices: 78346700--78346829 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
78346690 ATGCTGGAAA
* * * *
78346700 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
78346740 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
78346780 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
78346820 TTATATCCGG
1 TTATATCCGG
78346830 TTATTCCGAA
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:78358903 original size:12 final size:12
Alignment explanation
Indices: 78358883--78358913 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
78358873 CTCTAGTTTT
78358883 CACACGGCCTAG
1 CACACGGCCTAG
*
78358895 CACATGGCCTAG
1 CACACGGCCTAG
78358907 CACACGG
1 CACACGG
78358914 GTGTGTGAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.26, C:0.39, G:0.26, T:0.10
Consensus pattern (12 bp):
CACACGGCCTAG
Found at i:78363604 original size:16 final size:17
Alignment explanation
Indices: 78363583--78363615 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
78363573 TCACTATTTA
78363583 CACTCA-CAATGCTTTC
1 CACTCATCAATGCTTTC
78363599 CACTCATTCAATGCTTT
1 CACTCA-TCAATGCTTT
78363616 TATTCACCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.24, C:0.33, G:0.06, T:0.36
Consensus pattern (17 bp):
CACTCATCAATGCTTTC
Found at i:78363634 original size:19 final size:20
Alignment explanation
Indices: 78363610--78363659 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 20
78363600 ACTCATTCAA
78363610 TGCTTTTATTCACC-CA-CT
1 TGCTTTTATTCACCTCACCT
78363628 GTGCTTTTA-TC-CCTCACCT
1 -TGCTTTTATTCACCTCACCT
78363647 TGCTTTTATTCAC
1 TGCTTTTATTCAC
78363660 TCAATTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
17 2 0.07
18 12 0.44
19 12 0.44
20 1 0.04
ACGTcount: A:0.14, C:0.32, G:0.08, T:0.46
Consensus pattern (20 bp):
TGCTTTTATTCACCTCACCT
Found at i:78367029 original size:48 final size:48
Alignment explanation
Indices: 78366958--78367278 Score: 276
Period size: 48 Copynumber: 6.7 Consensus size: 48
78366948 AGGGCAAATT
* *
78366958 GCCGATGCCATGTCCCAGACATGGTCTTACAATGGCTCACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAG
* * * * * * *
78367006 GCCGATGCCATGTCTCAGACATGGTCTTACACTAGCTCTCGT-CCTAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATC-GAG
* * * * *
78367054 GTCGATGCCATGTCCCAGACATAGTCTTACATTGGTTCACATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATCGAG
* * * *
78367102 GTCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAG
* * * * *
78367150 ACTGATGCCGTGTCCCAGACATGATCTTACACTGGCTCTTACA-A-C-ATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC--ACATATCGA-G
* * * *
78367198 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATCGAG
* * *
78367246 GCTGACGCTATGTCCCAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
78367279 AGCGCACACA
Statistics
Matches: 213, Mismatches: 49, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
46 2 0.01
47 4 0.02
48 203 0.95
49 1 0.00
50 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAG
Found at i:78367225 original size:144 final size:143
Alignment explanation
Indices: 78366962--78367286 Score: 393
Period size: 144 Copynumber: 2.3 Consensus size: 143
78366952 CAAATTGCCG
* * * ** *
78366962 ATGCCATGTCCCAGACATGGTCTTACAATGGCTCACATGTCGAGGCCGATGCCATGTCTCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGACACCGATGCCATGTCCCAGACA
* * * * * * *
78367027 TGGTCTTACACTAGCTCTCGTCCTAATGTCGATGCCATGTCCCAGACATAGTCTTACATTGGTTC
66 TGATCTTACACTAGCTCTC-TACAAATGCCGATGCCATGTCCCAAACATAGTCTTACACTGGCTC
78367092 ACATAATGTGG-TCA
130 ACATAATGTGGCT-A
* *
78367106 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGACACTGATGCCGTGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGACACCGATGCCATGTCCCAGACA
* * *
78367171 TGATCTTACACTGGCTCT-TACAACATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCT
66 TGATCTTACACTAGCTCTCTACAA-A-TGCCGATGCCATGTCCCAAACATAGTCTTACACTGGCT
* *
78367235 CTCATAATGTGGCTG
129 CACATAATGTGGCTA
* * *
78367250 ACGCTATGTCCCAGACATGGTCTTACACTAGCGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA
78367287 CATCACCCAA
Statistics
Matches: 155, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
142 3 0.02
143 1 0.01
144 150 0.97
145 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (143 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGACACCGATGCCATGTCCCAGACA
TGATCTTACACTAGCTCTCTACAAATGCCGATGCCATGTCCCAAACATAGTCTTACACTGGCTCA
CATAATGTGGCTA
Found at i:78369585 original size:30 final size:30
Alignment explanation
Indices: 78369551--78369636 Score: 109
Period size: 30 Copynumber: 2.9 Consensus size: 30
78369541 TCGCTTGTCG
* * *
78369551 GTGTGCCACACATGGTCACACCACACGTTC
1 GTGTGCCACACACGGTCATACCACACGTCC
* * *
78369581 GTGTGCCACATACAGTCATACCACATGTCC
1 GTGTGCCACACACGGTCATACCACACGTCC
*
78369611 CTGTGCCACACACGGTCATACCACAC
1 GTGTGCCACACACGGTCATACCACAC
78369637 ATCTGTCCAT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.26, C:0.37, G:0.17, T:0.20
Consensus pattern (30 bp):
GTGTGCCACACACGGTCATACCACACGTCC
Found at i:78370265 original size:24 final size:24
Alignment explanation
Indices: 78370238--78370283 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
78370228 TCAAGGAATG
*
78370238 GATTATGGAGAAAATCAAGGAGAA
1 GATTAGGGAGAAAATCAAGGAGAA
* * *
78370262 GATTGGGGAGGAAATCATGGAG
1 GATTAGGGAGAAAATCAAGGAG
78370284 GCATTTTAGG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.41, C:0.04, G:0.37, T:0.17
Consensus pattern (24 bp):
GATTAGGGAGAAAATCAAGGAGAA
Found at i:78372933 original size:29 final size:29
Alignment explanation
Indices: 78372901--78373035 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
78372891 ATACCCTCCG
** * *
78372901 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
78372930 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
78372959 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
78372988 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
78373017 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
78373036 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:78372968 original size:58 final size:58
Alignment explanation
Indices: 78372847--78373036 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
78372837 TACTCGATTT
* * * *** *
78372847 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
78372905 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
78372963 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
78373021 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
78373037 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:78380894 original size:29 final size:29
Alignment explanation
Indices: 78380862--78380996 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
78380852 ATACCCTCCG
** * *
78380862 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
78380891 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
78380920 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
78380949 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
78380978 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
78380997 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:78380929 original size:58 final size:58
Alignment explanation
Indices: 78380808--78380997 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
78380798 TACTCGATTT
* * * *** *
78380808 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
78380866 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
78380924 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
78380982 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
78380998 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:78382902 original size:27 final size:27
Alignment explanation
Indices: 78382872--78383039 Score: 205
Period size: 27 Copynumber: 6.3 Consensus size: 27
78382862 CCCTAAAATA
*
78382872 GGTAAAATGATCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* ** * * *
78382899 GGTAAAATCACTATAATGCCCTTTTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
78382926 GGTAAAATGACCGTAATA-CCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
78382952 GGTAAAATGATCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
78382979 GGTAAAATGACCGTAATGA-CCCTGTAG
1 GGTAAAATGACCGTAAT-ACCCCTGTAG
* * *
78383006 GGTAAAATGACCATAATAACCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
78383033 GGTAAAA
1 GGTAAAA
78383040 GAACGATTAT
Statistics
Matches: 120, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
26 24 0.20
27 95 0.79
28 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:78383007 original size:80 final size:81
Alignment explanation
Indices: 78382872--78383039 Score: 250
Period size: 80 Copynumber: 2.1 Consensus size: 81
78382862 CCCTAAAATA
* *
78382872 GGTAAAATGATCGTAATACCCCTGTAGGGTAAAATCACTATAATGCCCTTTTAGGGTAAAATGAC
1 GGTAAAATGATCGTAATACCCCTGTAGGGTAAAATCACCATAATGCCCTTGTAGGGTAAAATGAC
*
78382937 CGTAAT-ACCCTATAG
66 CATAATAACCCTATAG
* *
78382952 GGTAAAATGATCGTAATACCCCTGTAGGGTAAAATGACCGTAATGACCC-TGTAGGGTAAAATGA
1 GGTAAAATGATCGTAATACCCCTGTAGGGTAAAATCACCATAATG-CCCTTGTAGGGTAAAATGA
* *
78383016 CCATAATAACCCTGTAT
65 CCATAATAACCCTATAG
78383033 GGTAAAA
1 GGTAAAA
78383040 GAACGATTAT
Statistics
Matches: 79, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
80 62 0.78
81 17 0.22
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (81 bp):
GGTAAAATGATCGTAATACCCCTGTAGGGTAAAATCACCATAATGCCCTTGTAGGGTAAAATGAC
CATAATAACCCTATAG
Found at i:78383442 original size:33 final size:33
Alignment explanation
Indices: 78383389--78383464 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
78383379 TTTGCATTAC
* * *
78383389 ACTGCACTGTTACTGTATAGGACTAAGGCCCAG
1 ACTGTACTGATACTGAATAGGACTAAGGCCCAG
* *
78383422 ACTGTACTGATACTGAATAGGGCTCAGGCCCAG
1 ACTGTACTGATACTGAATAGGACTAAGGCCCAG
78383455 ACTGTTACTG
1 ACTG-TACTG
78383465 CATGCACTGT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 32 0.86
34 5 0.14
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (33 bp):
ACTGTACTGATACTGAATAGGACTAAGGCCCAG
Found at i:78391513 original size:42 final size:42
Alignment explanation
Indices: 78391465--78391576 Score: 113
Period size: 42 Copynumber: 2.6 Consensus size: 42
78391455 GTGTTCTAGT
78391465 GTAAGACCACGTCTGGGATGCTGGCATCGATATGTGATTTGC-
1 GTAAGACCACGTCTGGGATGCTGGCATCGATATGTGA-TTGCA
* * *
78391507 GTAAGACC-CTGCCTGGAATAGC-GGTATCGATATGTGATTGCA
1 GTAAGACCAC-GTCTGGGAT-GCTGGCATCGATATGTGATTGCA
* * *
78391549 TGTAAGACTACGTCTGGGACGTTGGCAT
1 -GTAAGACCACGTCTGGGATGCTGGCAT
78391577 TGTACGATAT
Statistics
Matches: 55, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
41 5 0.09
42 30 0.55
43 19 0.35
44 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (42 bp):
GTAAGACCACGTCTGGGATGCTGGCATCGATATGTGATTGCA
Found at i:78396774 original size:40 final size:40
Alignment explanation
Indices: 78396716--78396900 Score: 268
Period size: 40 Copynumber: 4.6 Consensus size: 40
78396706 CGGATGATAA
78396716 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
* *
78396756 CTGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
* *
78396796 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-T
*
78396836 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACT-ATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTAAT-T
*
78396876 TCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
78396901 AGCGAGTAGC
Statistics
Matches: 134, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 2 0.01
40 132 0.99
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
Found at i:78396854 original size:80 final size:80
Alignment explanation
Indices: 78396716--78396933 Score: 275
Period size: 80 Copynumber: 2.7 Consensus size: 80
78396706 CGGATGATAA
* * * *
78396716 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCTGGGCTAAGTCCTGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTT
78396780 GTGCT-AGTGACTAAT-T
65 GTG-TGAGTGACT-ATGT
78396796 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
78396861 TGTGAGTTACTATGT
66 TGTGAGTGACTATGT
* * * * *
78396876 TCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATGTCC-GGCTAAATACCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
78396934 AACTTGGTTG
Statistics
Matches: 124, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
79 19 0.15
80 104 0.84
81 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGTGAGTGACTATGT
Found at i:78398483 original size:2 final size:2
Alignment explanation
Indices: 78398476--78398505 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
78398466 TGAAGTATTC
*
78398476 AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78398506 GAATATAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78398492 original size:10 final size:10
Alignment explanation
Indices: 78398477--78398512 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
78398467 GAAGTATTCA
78398477 TATATATATG
1 TATATATATG
*
78398487 TATATATATA
1 TATATATATG
78398497 TATATATATG
1 TATATATATG
*
78398507 AATATA
1 TATATA
78398513 GTTTCTCGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (10 bp):
TATATATATG
Found at i:78413202 original size:18 final size:18
Alignment explanation
Indices: 78413179--78413214 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
78413169 TTTAGCATGA
78413179 AATTCTCGTTCGTGGCTT
1 AATTCTCGTTCGTGGCTT
*
78413197 AATTCTCGTTTGTGGCTT
1 AATTCTCGTTCGTGGCTT
78413215 TCTTGTTCGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.19, G:0.22, T:0.47
Consensus pattern (18 bp):
AATTCTCGTTCGTGGCTT
Found at i:78413647 original size:13 final size:13
Alignment explanation
Indices: 78413629--78413653 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78413619 CCAAGCACAC
78413629 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
78413642 GCCCGTGTCCCT
1 GCCCGTGTCCCT
78413654 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:78416480 original size:15 final size:15
Alignment explanation
Indices: 78416460--78416490 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
78416450 TCAATAAGGT
*
78416460 AAATAAAAAAATTCA
1 AAATAAAAAAAATCA
78416475 AAATAAAAAAAATCA
1 AAATAAAAAAAATCA
78416490 A
1 A
78416491 CAAGGTAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.16
Consensus pattern (15 bp):
AAATAAAAAAAATCA
Found at i:78420906 original size:43 final size:43
Alignment explanation
Indices: 78420854--78420946 Score: 132
Period size: 43 Copynumber: 2.2 Consensus size: 43
78420844 TTTTATACAA
* *
78420854 AATCACAATACGATGCCAATGTCTCAGACATGGCCTGACACGT
1 AATCACAATACAATGCCAATGTCCCAGACATGGCCTGACACGT
* * * *
78420897 AATCTCAATACAATGCCAATGTCCCAGACATGGTCTTACATGT
1 AATCACAATACAATGCCAATGTCCCAGACATGGCCTGACACGT
78420940 AATCACA
1 AATCACA
78420947 TCTCGATAAC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (43 bp):
AATCACAATACAATGCCAATGTCCCAGACATGGCCTGACACGT
Found at i:78422287 original size:2 final size:2
Alignment explanation
Indices: 78422280--78422308 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
78422270 AGATGGATAC
78422280 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
78422309 GATTCGTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:78425597 original size:48 final size:48
Alignment explanation
Indices: 78425552--78425681 Score: 163
Period size: 48 Copynumber: 2.7 Consensus size: 48
78425542 TGTGATCCTG
*
78425552 TGTAAGACCATGTTTGGGACATGACATTGGCATCGATCTACGATCCCA
1 TGTAAGACCATGTTTGGGACATGACATTGGCATCGATATACGATCCCA
* * * **
78425600 TGTAAGACCATGTCTGGGACTTGGCATTGGCATCGATATGTGATCCCA
1 TGTAAGACCATGTTTGGGACATGACATTGGCATCGATATACGATCCCA
* * *
78425648 TGTAAGACCAT-TTCTGGGATACGAAATTGGCATC
1 TGTAAGACCATGTT-TGGGACATGACATTGGCATC
78425682 CTACCATGTG
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
47 1 0.01
48 68 0.99
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTTTGGGACATGACATTGGCATCGATATACGATCCCA
Done.