Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 254 of 410
Found at i:78427080 original size:11 final size:11
Alignment explanation
Indices: 78427059--78427091 Score: 52
Period size: 10 Copynumber: 3.2 Consensus size: 11
78427049 TTCATGAAAA
78427059 TTTTTCT-AAG
1 TTTTTCTAAAG
78427069 TTTTTCTAAAG
1 TTTTTCTAAAG
78427080 -TTTTCTAAAG
1 TTTTTCTAAAG
78427090 TT
1 TT
78427092 CTTGGATTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 17 0.81
11 4 0.19
ACGTcount: A:0.24, C:0.09, G:0.09, T:0.58
Consensus pattern (11 bp):
TTTTTCTAAAG
Found at i:78428831 original size:43 final size:43
Alignment explanation
Indices: 78428782--78428988 Score: 235
Period size: 43 Copynumber: 4.9 Consensus size: 43
78428772 TCTTACATGT
* *
78428782 AATCAAATATCGATGCCACTGTCCCAGATAGGGTCTTACACTA
1 AATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACACTA
* * * ** *
78428825 AATCAAATA-CGAAG-CAATGTCCCAGACATAGTCTTACA-TGT
1 AATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACACT-A
* *
78428866 AATCACATACCGATGCCACTGTCCTAGACAGGGTCTTACAC-A
1 AATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACACTA
*
78428908 TAATCACATATCAATGCCACTGTCCCAGACAGGGTCTTACACGT-
1 -AATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACAC-TA
* *
78428952 AATCACATATTGATGCCACTATCCCAGACAGGGTCTT
1 AATCACATATCGATGCCACTGTCCCAGACAGGGTCTT
78428989 GTGCATAAAT
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
40 1 0.01
41 28 0.20
42 8 0.06
43 101 0.73
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (43 bp):
AATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACACTA
Found at i:78428859 original size:41 final size:43
Alignment explanation
Indices: 78428782--78429036 Score: 150
Period size: 43 Copynumber: 6.0 Consensus size: 43
78428772 TCTTACATGT
* * * *
78428782 AATCAAATATCGATGCCACTGTCCCAGATAGGGTCTTACACTA
1 AATCAAATATCGAAGCCAATGTCCCAGACAGAGTCTTACACTA
* *
78428825 AATCAAATA-CGAAG-CAATGTCCCAGACATAGTCTTACA-TGT
1 AATCAAATATCGAAGCCAATGTCCCAGACAGAGTCTTACACT-A
* * * * * *
78428866 AATCACATACCGATGCCACTGTCCTAGACAGGGTCTTACAC-A
1 AATCAAATATCGAAGCCAATGTCCCAGACAGAGTCTTACACTA
* * *
78428908 TAATCACATATC-AATGCCACTGTCCCAGACAGGGTCTTACACGT-
1 -AATCAAATATCGAA-GCCAATGTCCCAGACAGAGTCTTACAC-TA
* * * * * * *
78428952 AATCACATATTGATGCCACTATCCCAGACAGGGTCTTGTGCA-TA
1 AATCAAATATCGAAGCCAATGTCCCAGACAGAGTC-T-TACACTA
* * *
78428996 AATCATAA-GTCGATGCCAACGTCCCAGAC-GTAGTCTTACAC
1 AATCA-AATATCGAAGCCAATGTCCCAGACAG-AGTCTTACAC
78429037 GATAACACAT
Statistics
Matches: 169, Mismatches: 28, Indels: 30
0.74 0.12 0.13
Matches are distributed among these distances:
40 1 0.01
41 28 0.17
42 12 0.07
43 98 0.58
44 26 0.15
45 4 0.02
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.24
Consensus pattern (43 bp):
AATCAAATATCGAAGCCAATGTCCCAGACAGAGTCTTACACTA
Found at i:78428967 original size:86 final size:84
Alignment explanation
Indices: 78428770--78428988 Score: 289
Period size: 84 Copynumber: 2.6 Consensus size: 84
78428760 TCTCAAATGT
* *
78428770 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGATAGGGTCTTACACTAAATCAAATAC
1 GGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACACTAAATCAAATAC
*
78428835 GAAGCAATGTCCCAGACAT
66 GAAGCAATGTCCCAGACAG
* * * *
78428854 AGTCTTACATGTAATCACATACCGATGCCACTGTCCTAGACAGGGTCTTACAC-ATAATCACATA
1 GGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACACTA-AATCAAATA
*
78428918 TC-AATGCCACTGTCCCAGACAG
65 -CGAA-G-CAATGTCCCAGACAG
* * *
78428940 GGTCTTACACGTAATCACATATTGATGCCACTATCCCAGACAGGGTCTT
1 GGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAGGGTCTT
78428989 GTGCATAAAT
Statistics
Matches: 117, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
83 1 0.01
84 58 0.50
85 2 0.02
86 56 0.48
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (84 bp):
GGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACACTAAATCAAATAC
GAAGCAATGTCCCAGACAG
Found at i:78428996 original size:86 final size:86
Alignment explanation
Indices: 78428771--78429050 Score: 281
Period size: 84 Copynumber: 3.3 Consensus size: 86
78428761 CTCAAATGTG
* * *
78428771 GTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGATAGGGTC-TTACACTAAATCAAATA-
1 GTCTTACACGTAATCACATATCGATGCCACTGTCCCAGACAGGGTCTTTACA-TAAATCAAATAT
* *
78428834 CGAA-G-CAATGTCCCAGACATA
65 C-AATGCCACTGTCCCAGACAGA
* * * * *
78428855 GTCTTACATGTAATCACATACCGATGCCACTGTCCTAGACAGGGTC-TTACACATAATCACATAT
1 GTCTTACACGTAATCACATATCGATGCCACTGTCCCAGACAGGGTCTTTACATA-AATCAAATAT
*
78428919 CAATGCCACTGTCCCAGACAGG
65 CAATGCCACTGTCCCAGACAGA
* * * *
78428941 GTCTTACACGTAATCACATATTGATGCCACTATCCCAGACAGGGTCTTGTGCATAAATCATAA-G
1 GTCTTACACGTAATCACATATCGATGCCACTGTCCCAGACAGGGTCTT-TACATAAATCA-AATA
*
78429005 TCGATGCCAAC-GTCCCAGAC-GTA
64 TCAATGCC-ACTGTCCCAGACAG-A
78429028 GTCTTACACGATAA-CACATATCG
1 GTCTTACACG-TAATCACATATCG
78429051 GATCCTATGT
Statistics
Matches: 165, Mismatches: 21, Indels: 17
0.81 0.10 0.08
Matches are distributed among these distances:
83 1 0.01
84 57 0.35
85 2 0.01
86 55 0.33
87 40 0.24
88 10 0.06
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (86 bp):
GTCTTACACGTAATCACATATCGATGCCACTGTCCCAGACAGGGTCTTTACATAAATCAAATATC
AATGCCACTGTCCCAGACAGA
Found at i:78436656 original size:80 final size:80
Alignment explanation
Indices: 78436572--78436720 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
78436562 TATGGTAACC
* * * *
78436572 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
78436636 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
78436652 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
78436717 CCGG
66 CCGG
78436721 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:78436662 original size:40 final size:38
Alignment explanation
Indices: 78436613--78436720 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
78436603 ATCACGATTT
*
78436613 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
78436653 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
78436693 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
78436721 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:78444286 original size:69 final size:68
Alignment explanation
Indices: 78444196--78444351 Score: 278
Period size: 69 Copynumber: 2.3 Consensus size: 68
78444186 TGTATCCCAT
78444196 GTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGA
1 GTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGG-
78444261 CACCA
65 -ACCA
78444266 -TAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGA
1 GTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGA
78444330 CCA
66 CCA
78444333 TGTAGACAAGAGAGCTACG
1 -GTAGACAAGAGAGCTACG
78444352 AGACAAATCG
Statistics
Matches: 84, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
67 4 0.05
69 80 0.95
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.19
Consensus pattern (68 bp):
GTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGA
CCA
Found at i:78451786 original size:68 final size:70
Alignment explanation
Indices: 78451714--78451911 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
78451704 ACACCCTGTA
* * * *
78451714 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
78451776 ATAAAT
65 ATAAAT
*
78451782 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
78451847 ATAAAT
65 ATAAAT
*
78451853 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
78451912 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:78451825 original size:41 final size:41
Alignment explanation
Indices: 78451780--78451897 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
78451770 TGAAAGATAA
78451780 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
78451821 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78451851 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78451892 ATGTAG
1 ATGTAG
78451898 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:78451837 original size:71 final size:71
Alignment explanation
Indices: 78451748--78451911 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78451738 GAGATGTATC
78451748 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78451813 AGGACA
66 AGGACA
78451819 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78451884 AGGACA
66 AGGACA
78451890 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
78451912 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:78453219 original size:16 final size:16
Alignment explanation
Indices: 78453198--78453229 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
78453188 GACGGTAACG
78453198 GGTAAGGGGTGTTACA
1 GGTAAGGGGTGTTACA
78453214 GGTAAGGGGTGTTACA
1 GGTAAGGGGTGTTACA
78453230 AGTTGTAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.44, T:0.25
Consensus pattern (16 bp):
GGTAAGGGGTGTTACA
Found at i:78456217 original size:29 final size:29
Alignment explanation
Indices: 78456185--78456284 Score: 80
Period size: 29 Copynumber: 3.4 Consensus size: 29
78456175 TACCGATCTT
78456185 GCACACAAAGTGCTCGGTTAAAGGAATTC
1 GCACACAAAGTGCTCGGTTAAAGGAATTC
** **
78456214 GCACACACAA-TGCCTCAATT-ACTG-ATCTC
1 GCACACA-AAGTG-CTCGGTTAAAGGAAT-TC
* * *
78456243 GCACTCATAGTGCTCGGTTAAAGGAATTT
1 GCACACAAAGTGCTCGGTTAAAGGAATTC
*
78456272 GCACACACAGTGC
1 GCACACAAAGTGC
78456285 CTCTAATCAT
Statistics
Matches: 52, Mismatches: 13, Indels: 12
0.68 0.17 0.16
Matches are distributed among these distances:
28 8 0.15
29 35 0.67
30 9 0.17
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (29 bp):
GCACACAAAGTGCTCGGTTAAAGGAATTC
Found at i:78456218 original size:58 final size:58
Alignment explanation
Indices: 78456136--78456287 Score: 216
Period size: 58 Copynumber: 2.6 Consensus size: 58
78456126 TGCTCGACAT
* * * *
78456136 AGTGCTCAGTTGAA-GAACTCGCACACACAGTGCCTCAATTACCGATCTTGCACACAA
1 AGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACCGATCTCGCACACAA
* * * *
78456193 AGTGCTCGGTTAAAGGAATTCGCACACACAATGCCTCAATTACTGATCTCGCACTCAT
1 AGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACCGATCTCGCACACAA
*
78456251 AGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 AGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC
78456288 TAATCATTCG
Statistics
Matches: 84, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
57 12 0.14
58 72 0.86
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (58 bp):
AGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACCGATCTCGCACACAA
Found at i:78456502 original size:43 final size:43
Alignment explanation
Indices: 78456441--78456834 Score: 592
Period size: 43 Copynumber: 9.2 Consensus size: 43
78456431 CCTTGCTCGA
** *
78456441 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
78456484 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
78456527 ATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * * *
78456570 ATCACCGGCACAAAGCCAGCTAGGCACGAAGGCCCAAATGCAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
78456613 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
78456656 ATCATCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * *
78456699 ATCATCGGCACAAAGCCTGCTTGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
78456742 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCCAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
78456785 ATCACCGGCACGAAGCTTGCTTGGCACGAAGGCCTC-AATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC-CGAATACAC
78456828 ATCACCG
1 ATCACCG
78456835 AGTTTCATGC
Statistics
Matches: 322, Mismatches: 28, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
43 321 1.00
44 1 0.00
ACGTcount: A:0.31, C:0.34, G:0.23, T:0.12
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:78458270 original size:35 final size:35
Alignment explanation
Indices: 78458231--78458303 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
78458221 ACACATTCTT
*
78458231 TATTCTTGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
78458266 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
78458301 TAT
1 TAT
78458304 ATCACATACC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.40, C:0.18, G:0.05, T:0.37
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:78464362 original size:31 final size:31
Alignment explanation
Indices: 78464319--78464382 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
78464309 CCTTTTCATA
78464319 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
78464350 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
78464381 TT
1 TT
78464383 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:78464621 original size:24 final size:24
Alignment explanation
Indices: 78464574--78464716 Score: 229
Period size: 24 Copynumber: 6.0 Consensus size: 24
78464564 GCTTTATCAT
*
78464574 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
78464599 ATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
78464623 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
78464646 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
78464670 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
78464694 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
78464717 GCACTTCCTC
Statistics
Matches: 113, Mismatches: 1, Indels: 9
0.92 0.01 0.07
Matches are distributed among these distances:
23 24 0.21
24 75 0.66
25 14 0.12
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:78464649 original size:47 final size:49
Alignment explanation
Indices: 78464574--78464716 Score: 231
Period size: 47 Copynumber: 3.0 Consensus size: 49
78464564 GCTTTATCAT
*
78464574 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTA
78464623 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC-TTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTA
78464670 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
78464717 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 1, Indels: 8
0.91 0.01 0.08
Matches are distributed among these distances:
47 40 0.45
48 34 0.38
49 15 0.17
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (49 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTA
Found at i:78464673 original size:71 final size:72
Alignment explanation
Indices: 78464574--78464715 Score: 236
Period size: 71 Copynumber: 2.0 Consensus size: 72
78464564 GCTTTATCAT
*
78464574 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAA
78464638 GCCCTTTA
65 GCCCTTTA
78464646 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAA
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAA
78464709 GCCCTTT
65 GCCCTTT
78464716 TGCACTTCCT
Statistics
Matches: 67, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
71 49 0.73
72 18 0.27
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (72 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAG
CCCTTTA
Found at i:78464787 original size:20 final size:20
Alignment explanation
Indices: 78464764--78464830 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
78464754 TTATAAATAC
*
78464764 ATCATGTGCATGTCATACAT
1 ATCATGTGCATATCATACAT
78464784 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
78464804 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
78464824 ACCATGT
1 ATCATGT
78464831 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:78464895 original size:25 final size:25
Alignment explanation
Indices: 78464867--78464914 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
78464857 ATGTATAAAC
* * *
78464867 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
78464892 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
78464915 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:78472467 original size:31 final size:31
Alignment explanation
Indices: 78472424--78472487 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
78472414 CCTTTTCATA
78472424 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
78472455 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
78472486 TT
1 TT
78472488 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:78472769 original size:24 final size:24
Alignment explanation
Indices: 78472679--78472817 Score: 209
Period size: 23 Copynumber: 6.0 Consensus size: 24
78472669 GCTTTATCAT
*
78472679 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
78472704 ATAACTGGGGC---AGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
78472725 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
78472748 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
78472771 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
78472795 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
78472818 GCACTTCCTC
Statistics
Matches: 110, Mismatches: 0, Indels: 9
0.92 0.00 0.08
Matches are distributed among these distances:
21 17 0.15
22 4 0.04
23 45 0.41
24 36 0.33
25 8 0.07
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:78472788 original size:47 final size:47
Alignment explanation
Indices: 78472679--78472816 Score: 205
Period size: 47 Copynumber: 3.0 Consensus size: 47
78472669 GCTTTATCAT
*
78472679 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGC---AGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCC-TTTA
78472725 ATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
78472771 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
78472817 TGCACTTCCT
Statistics
Matches: 86, Mismatches: 1, Indels: 9
0.90 0.01 0.09
Matches are distributed among these distances:
44 17 0.20
45 7 0.08
46 24 0.28
47 38 0.44
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:78472889 original size:20 final size:20
Alignment explanation
Indices: 78472864--78472930 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
78472854 ATTTAAATAC
* *
78472864 ATCATGTGCATGTCATTCAT
1 ATCATGTGCATATCATACAT
78472884 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
78472904 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
78472924 ACCATGT
1 ATCATGT
78472931 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:78472895 original size:11 final size:11
Alignment explanation
Indices: 78472864--78472919 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
78472854 ATTTAAATAC
78472864 ATCATGTGCAT
1 ATCATGTGCAT
*
78472875 GTCAT-T-CAT
1 ATCATGTGCAT
78472884 ATCATGTGCAT
1 ATCATGTGCAT
*
78472895 ATCA--TACAT
1 ATCATGTGCAT
*
78472904 GTCATGTGCAT
1 ATCATGTGCAT
78472915 ATCAT
1 ATCAT
78472920 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 14 0.40
10 2 0.06
11 19 0.54
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:78472995 original size:25 final size:25
Alignment explanation
Indices: 78472967--78473014 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
78472957 ATGTATAAAC
* * *
78472967 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
78472992 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
78473015 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:78479682 original size:29 final size:30
Alignment explanation
Indices: 78479586--78479688 Score: 154
Period size: 30 Copynumber: 3.5 Consensus size: 30
78479576 GACAAGATTG
* * * * *
78479586 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
78479616 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
78479646 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
78479675 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
78479689 GATTCACTAT
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
29 20 0.29
30 48 0.71
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:78481888 original size:13 final size:13
Alignment explanation
Indices: 78481872--78481904 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
78481862 TTTAATTAAA
*
78481872 TTAGTTAATTAGT
1 TTAGATAATTAGT
78481885 TTAGATAATTAGT
1 TTAGATAATTAGT
78481898 TTA-ATAA
1 TTAGATAA
78481905 ACAAACTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:78483427 original size:28 final size:28
Alignment explanation
Indices: 78483381--78483447 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
78483371 CAATGCCTTG
* * *
78483381 CACATTAAGTGCCATACTCGATATC-TCA
1 CACACTAAGTGCCACACTCGACATCAT-A
* *
78483409 CACACTAAGTGCCGCACTCGACATCATG
1 CACACTAAGTGCCACACTCGACATCATA
78483437 CACACTAAGTG
1 CACACTAAGTG
78483448 TCGTACATAG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 32 0.97
29 1 0.03
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.22
Consensus pattern (28 bp):
CACACTAAGTGCCACACTCGACATCATA
Found at i:78487977 original size:25 final size:25
Alignment explanation
Indices: 78487948--78487995 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
78487938 TTATAATATG
* * *
78487948 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
78487973 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
78487996 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:78488057 original size:20 final size:20
Alignment explanation
Indices: 78488032--78488074 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
78488022 ATTTTGATAA
78488032 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
78488052 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
78488072 ACA
1 ACA
78488075 CGAGGTGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:78488243 original size:25 final size:24
Alignment explanation
Indices: 78488128--78488247 Score: 165
Period size: 23 Copynumber: 5.0 Consensus size: 24
78488118 GAGGAAGTGC
*
78488128 AAAAGAGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
78488152 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
78488176 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
78488199 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
78488224 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
78488248 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 2, Indels: 11
0.87 0.02 0.11
Matches are distributed among these distances:
23 29 0.33
24 29 0.33
25 21 0.24
26 9 0.10
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:78488482 original size:31 final size:31
Alignment explanation
Indices: 78488444--78488503 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
78488434 TACAGTAAAG
78488444 GCTTCGGCCCAGTAATATGAAATATGAAAAA
1 GCTTCGGCCCAGTAATATGAAATATGAAAAA
** *
78488475 GCTTCGGCCCAGTGTTATGAATTATGAAA
1 GCTTCGGCCCAGTAATATGAAATATGAAA
78488504 TATGAAAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.27
Consensus pattern (31 bp):
GCTTCGGCCCAGTAATATGAAATATGAAAAA
Found at i:78498089 original size:45 final size:45
Alignment explanation
Indices: 78498019--78498105 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
78498009 AACATATGTG
* *
78498019 ACATACATCATGAACTCAGATCACAACTCAATAAGTTCAGATGCC
1 ACATACATCATGAACTCAAACCACAACTCAATAAGTTCAGATGCC
* *
78498064 ACATATATCATGAACTCAAACCACAACTTAATAAGTTCAGAT
1 ACATACATCATGAACTCAAACCACAACTCAATAAGTTCAGAT
78498106 AACATAATTC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.43, C:0.24, G:0.09, T:0.24
Consensus pattern (45 bp):
ACATACATCATGAACTCAAACCACAACTCAATAAGTTCAGATGCC
Found at i:78509810 original size:27 final size:26
Alignment explanation
Indices: 78509779--78509837 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
78509769 ACTGCCAGAA
*
78509779 ACAGTAAATGTGGCAAAGCCATCAGT
1 ACAGTAAATGTGGCAAAGCCACCAGT
* *
78509805 ATCAGTAATTGTGGCATAGCCACCAGT
1 A-CAGTAAATGTGGCAAAGCCACCAGT
78509832 ACAGTA
1 ACAGTA
78509838 CTTCCTCCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
ACAGTAAATGTGGCAAAGCCACCAGT
Found at i:78510003 original size:27 final size:27
Alignment explanation
Indices: 78509973--78510089 Score: 121
Period size: 27 Copynumber: 4.4 Consensus size: 27
78509963 GGGCATAATC
* ** *
78509973 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAAAGGCATTACG
* *
78510000 GTCATTTCACCCTATAAAGGCATTACG
1 GTCATTTTACCCTACAAAGGCATTACG
* *
78510027 GTCATTTTACCCT--ATAGGATATTACG
1 GTCATTTTACCCTACAAAGG-CATTACG
* *
78510053 GTCATTTCACCCTACAAAGGCATTACA
1 GTCATTTTACCCTACAAAGGCATTACG
78510080 GTCATTTTAC
1 GTCATTTTAC
78510090 ACCACCAGGG
Statistics
Matches: 73, Mismatches: 14, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
25 4 0.05
26 18 0.25
27 47 0.64
28 4 0.05
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.33
Consensus pattern (27 bp):
GTCATTTTACCCTACAAAGGCATTACG
Found at i:78510066 original size:53 final size:54
Alignment explanation
Indices: 78509973--78510089 Score: 182
Period size: 53 Copynumber: 2.2 Consensus size: 54
78509963 GGGCATAATC
* * *
78509973 GTCATTTTACCATACAGGGGTATTACGGTCATTTCACCCTATAAAGGCATTACG
1 GTCATTTTACCATACAGGGATATTACGGTCATTTCACCCTACAAAGGCATTACA
* *
78510027 GTCATTTTACCCTATA-GGATATTACGGTCATTTCACCCTACAAAGGCATTACA
1 GTCATTTTACCATACAGGGATATTACGGTCATTTCACCCTACAAAGGCATTACA
78510080 GTCATTTTAC
1 GTCATTTTAC
78510090 ACCACCAGGG
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
53 44 0.76
54 14 0.24
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.33
Consensus pattern (54 bp):
GTCATTTTACCATACAGGGATATTACGGTCATTTCACCCTACAAAGGCATTACA
Found at i:78517544 original size:48 final size:48
Alignment explanation
Indices: 78517429--78517752 Score: 284
Period size: 48 Copynumber: 6.7 Consensus size: 48
78517419 TGAGATGCCA
* * * * *
78517429 ATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCGTATATCG-GTGCTG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCAC--ATATTGAG-GCTG
* *
78517479 ATGCCATGTTCCAAACATGGTCTTACACCAGCTCACATATTGAGGCTG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATTGAGGCTG
* * *
78517527 ATGCCATGTCCCGAACATGGTCTTACACTAGCTCTACGATA--AATGCTG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTC-AC-ATATTGAGGCTG
* * * **
78517575 ATACCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAAGGCTG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATTGAGGCTG
** * * * *
78517623 ATGCCATGTCCCCGACATGGTCTTACATTGGCTCTCATAAACTG-GTG-TCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACAT--ATTGAG-GCT-G
* * *
78517673 ATGCCATGTCCCAGACATGGTCTTACACTA--ACACATATTGAGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATTGAGGCTG
* *
78517719 ATGCCATGTCCTAGACATGGTCTTACACTAGCTC
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTC
78517753 TCGTATCCCT
Statistics
Matches: 226, Mismatches: 35, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
46 37 0.16
47 3 0.01
48 118 0.52
49 5 0.02
50 63 0.28
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATTGAGGCTG
Found at i:78517600 original size:96 final size:96
Alignment explanation
Indices: 78517429--78517755 Score: 371
Period size: 96 Copynumber: 3.4 Consensus size: 96
78517419 TGAGATGCCA
* * **
78517429 ATGCCATGTCCC-AGACATGGTCTTACATTGGCTCTCGTATATCGGTGCTGATGCCATGTTCCAA
1 ATGCCATGTCCCGAGACATGGTCTTACACTAGCTCTCG-ATA--AATGCTGATGCCATGTTCCAA
*
78517493 ACATGGTCTTACACCAGCTCACATATTGAGGCTG
63 ACATGGTCTTACACTAGCTCACATATTGAGGCTG
*
78517527 ATGCCATGTCCCGA-ACATGGTCTTACACTAGCTCTACGATAAATGCTGATACCATGTTCCAAAC
1 ATGCCATGTCCCGAGACATGGTCTTACACTAGCTCT-CGATAAATGCTGATGCCATGTTCCAAAC
* **
78517591 ATGGTCTTACACTGGCTCACATATCAAGGCTG
65 ATGGTCTTACACTAGCTCACATATTGAGGCTG
* * * * *
78517623 ATGCCATGTCCC-CGACATGGTCTTACATTGGCTCTC-ATAAACTGGTGTCGATGCCATGTCCCA
1 ATGCCATGTCCCGAGACATGGTCTTACACTAGCTCTCGATAAA-T-G-CT-GATGCCATGTTCCA
* * *
78517686 GACATGGTCTTACACTA--ACACATATTGAGGCCG
62 AACATGGTCTTACACTAGCTCACATATTGAGGCTG
*
78517719 ATGCCATGT-CCTAGACATGGTCTTACACTAGCTCTCG
1 ATGCCATGTCCCGAGACATGGTCTTACACTAGCTCTCG
78517756 TATCCCTAGT
Statistics
Matches: 196, Mismatches: 24, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
94 5 0.03
95 4 0.02
96 122 0.62
97 1 0.01
98 61 0.31
99 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (96 bp):
ATGCCATGTCCCGAGACATGGTCTTACACTAGCTCTCGATAAATGCTGATGCCATGTTCCAAACA
TGGTCTTACACTAGCTCACATATTGAGGCTG
Found at i:78519760 original size:41 final size:41
Alignment explanation
Indices: 78519715--78519832 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
78519705 TGAAAGATAA
78519715 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
78519756 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78519786 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78519827 ATGTAG
1 ATGTAG
78519833 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:78519771 original size:71 final size:71
Alignment explanation
Indices: 78519683--78519846 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78519673 GAGATGTATC
78519683 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78519748 AGGACA
66 AGGACA
78519754 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78519819 AGGACA
66 AGGACA
78519825 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
78519847 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:78527330 original size:41 final size:41
Alignment explanation
Indices: 78527285--78527402 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
78527275 TGAAAGATAA
78527285 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
78527326 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78527356 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78527397 ATGTAG
1 ATGTAG
78527403 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:78527341 original size:71 final size:71
Alignment explanation
Indices: 78527253--78527416 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78527243 GAGATGTATC
78527253 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78527318 AGGACA
66 AGGACA
78527324 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78527389 AGGACA
66 AGGACA
78527395 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
78527417 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:78540705 original size:43 final size:42
Alignment explanation
Indices: 78540652--78540736 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 42
78540642 TTGAAGGACT
* *
78540652 AAATTGTGAATTAAACATGTTGTATGGTCTTATATACAAGCCA
1 AAATTATGAATTAAACATGTTGTATGG-CTCATATACAAGCCA
*
78540695 AAATTATGAATTAAACATGTTGTATGGCTCATATAGAAGCCA
1 AAATTATGAATTAAACATGTTGTATGGCTCATATACAAGCCA
78540737 TGAAAATTCG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 13 0.33
43 26 0.67
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (42 bp):
AAATTATGAATTAAACATGTTGTATGGCTCATATACAAGCCA
Found at i:78541313 original size:43 final size:43
Alignment explanation
Indices: 78541180--78541327 Score: 124
Period size: 43 Copynumber: 3.5 Consensus size: 43
78541170 TGAGACATCG
* * * * *
78541180 TGTAAGACCGTGTCTGGGACACAAGCCTCGAT-TAAGATTTACA
1 TGTAAGACCCTGTCTGGGACACAGGCATCGATAT-TGAATTACA
* * ** * * *
78541223 TATAATACCCTGTCTGGGACATTGTCATC-ATATTTG-ATTTCG
1 TGTAAGACCCTGTCTGGGACACAGGCATCGATA-TTGAATTACA
*
78541265 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTACA
1 TGTAAGACCCTGTCTGGGACACAGGCATCGATATTGAATTACA
78541308 TGTAAGACCAC-GTCTGGGAC
1 TGTAAGACC-CTGTCTGGGAC
78541328 GTTGGCATTG
Statistics
Matches: 81, Mismatches: 19, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
42 32 0.40
43 47 0.58
44 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (43 bp):
TGTAAGACCCTGTCTGGGACACAGGCATCGATATTGAATTACA
Found at i:78541335 original size:43 final size:42
Alignment explanation
Indices: 78541218--78541335 Score: 116
Period size: 42 Copynumber: 2.8 Consensus size: 42
78541208 CGATTAAGAT
* * * *
78541218 TTACATATAATACCCTGTCTGGGACATTGTCATCATATTTGA
1 TTACATGTAAGACCCTGTCTGGGACGTTGGCATCATATTTGA
* * *
78541260 TTTCGTGTAAGACCCTGTCTGGGACAG-AGGCATCGATA-TTGAA
1 TTACATGTAAGACCCTGTCTGGGAC-GTTGGCATC-ATATTTG-A
78541303 TTACATGTAAGACCAC-GTCTGGGACGTTGGCAT
1 TTACATGTAAGACC-CTGTCTGGGACGTTGGCAT
78541336 TGTATTTGTT
Statistics
Matches: 61, Mismatches: 10, Indels: 9
0.76 0.12 0.11
Matches are distributed among these distances:
42 30 0.49
43 30 0.49
44 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.31
Consensus pattern (42 bp):
TTACATGTAAGACCCTGTCTGGGACGTTGGCATCATATTTGA
Found at i:78541343 original size:85 final size:85
Alignment explanation
Indices: 78541177--78541335 Score: 196
Period size: 85 Copynumber: 1.9 Consensus size: 85
78541167 GTCTGAGACA
* * * *
78541177 TCGTGTAAGACCGTGTCTGGGACACAAGCCTCGATTAAGATTTACATATAATACCCTGTCTGGGA
1 TCGTGTAAGACCCTGTCTGGGACACAAGCATCGATTAAGAATTACATATAAGACCCTGTCTGGGA
*
78541242 CATTGTCATCATATTTGATT
66 CATTGGCATCATATTTGATT
* * * *
78541262 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGA-TATTGAATTACATGTAAGACCAC-GTCTGG
1 TCGTGTAAGACCCTGTCTGGGACACAAGCATCGATTA-AGAATTACATATAAGACC-CTGTCTGG
*
78541325 GACGTTGGCAT
64 GACATTGGCAT
78541336 TGTATTTGTT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
84 2 0.03
85 59 0.95
86 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (85 bp):
TCGTGTAAGACCCTGTCTGGGACACAAGCATCGATTAAGAATTACATATAAGACCCTGTCTGGGA
CATTGGCATCATATTTGATT
Found at i:78544664 original size:40 final size:39
Alignment explanation
Indices: 78544620--78544788 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 39
78544610 CGCTAGGACA
** * * *
78544620 AAAAACGTTGCTATAAATCTAGCATTAGCGGCGGTATTTG
1 AAAAACGCCGCTATAGATCAAGCATTAGCGGCGCT-TTTG
* * * **
78544660 AAAAACACCGCTATAGATCAAGAATCAGCAACGCTTCTTG
1 AAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTT-TTG
78544700 AAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTTTTTG
1 AAAAACGCCGCTATAGATCAAGCATTAGCGGCGC-TTTTG
* * *
78544740 AAAAACGCCGCTATAGGTCGACCATTAGCGGCGCTTTCTG
1 AAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTTT-TG
78544780 AAAAACGCC
1 AAAAACGCC
78544789 ACAAAAAAAT
Statistics
Matches: 108, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 4 0.04
40 102 0.94
41 2 0.02
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (39 bp):
AAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTTTTG
Found at i:78545044 original size:21 final size:21
Alignment explanation
Indices: 78545019--78545089 Score: 56
Period size: 21 Copynumber: 3.4 Consensus size: 21
78545009 AATCAATTTA
78545019 GTTTATAGGTTATGGTTTAGG
1 GTTTATAGGTTATGGTTTAGG
* *
78545040 GTTTAT-GGTT-TAGAGATTAGT
1 GTTTATAGGTTAT-G-GTTTAGG
* * * *
78545061 GCTTATAGTTTAAGGTTTGGG
1 GTTTATAGGTTATGGTTTAGG
78545082 GTTTATAG
1 GTTTATAG
78545090 CCTAGGATTT
Statistics
Matches: 37, Mismatches: 9, Indels: 8
0.69 0.17 0.15
Matches are distributed among these distances:
19 1 0.03
20 5 0.14
21 27 0.73
22 4 0.11
ACGTcount: A:0.21, C:0.01, G:0.31, T:0.46
Consensus pattern (21 bp):
GTTTATAGGTTATGGTTTAGG
Found at i:78545045 original size:14 final size:14
Alignment explanation
Indices: 78545028--78545124 Score: 56
Period size: 14 Copynumber: 6.9 Consensus size: 14
78545018 AGTTTATAGG
78545028 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
* *
78545042 TTATGGTTTAGAGA
1 TTATGGTTTAGGGT
*
78545056 TTAGTGCTTATA--GT
1 TTA-TGGTT-TAGGGT
* *
78545070 TTAAGGTTTGGGGT
1 TTATGGTTTAGGGT
* ** *
78545084 TTATAGCCTAGGAT
1 TTATGGTTTAGGGT
*
78545098 TTATGATTTAGGGT
1 TTATGGTTTAGGGT
78545112 TT-TAGGTTTAGGG
1 TTAT-GGTTTAGGG
78545125 GTAAATATAG
Statistics
Matches: 59, Mismatches: 19, Indels: 10
0.67 0.22 0.11
Matches are distributed among these distances:
12 1 0.02
13 4 0.07
14 48 0.81
15 4 0.07
16 2 0.03
ACGTcount: A:0.21, C:0.03, G:0.31, T:0.45
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:78545565 original size:14 final size:14
Alignment explanation
Indices: 78545541--78545579 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
78545531 CGGGTTAAGG
78545541 GTTTAGGGTTTATA
1 GTTTAGGGTTTATA
78545555 GTTTAGGGTTTATA
1 GTTTAGGGTTTATA
**
78545569 GGATAGGGTTT
1 GTTTAGGGTTT
78545580 GTGATATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (14 bp):
GTTTAGGGTTTATA
Found at i:78545707 original size:14 final size:14
Alignment explanation
Indices: 78545688--78545734 Score: 67
Period size: 14 Copynumber: 3.4 Consensus size: 14
78545678 TTATTATTTG
*
78545688 GGTTTAGAGTTTTT
1 GGTTTAGAGTTTAT
*
78545702 GGTTTAGGGTTTAT
1 GGTTTAGAGTTTAT
*
78545716 GGTTTAGAGTTTGT
1 GGTTTAGAGTTTAT
78545730 GGTTT
1 GGTTT
78545735 TCTGTTTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.13, C:0.00, G:0.34, T:0.53
Consensus pattern (14 bp):
GGTTTAGAGTTTAT
Found at i:78546891 original size:2 final size:2
Alignment explanation
Indices: 78546884--78546911 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
78546874 ACCAGAACAG
78546884 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78546912 GGCGAAGCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78549162 original size:50 final size:49
Alignment explanation
Indices: 78549041--78549218 Score: 162
Period size: 50 Copynumber: 3.6 Consensus size: 49
78549031 ATCTGGTACG
* * **
78549041 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACA
* * *
78549090 CGTAGTAGCCTGCACTTGGTACTACACACGTGACCCCACCA-TCTAATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA--CCAACAGTCTAATACA
** * *** *
78549140 CATAGTAGCCTATACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG---TCTAATACA
*
78549191 CATAATAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
78549219 TGCGACCTCA
Statistics
Matches: 103, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 29 0.28
50 36 0.35
51 35 0.34
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.25
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACA
Found at i:78557163 original size:40 final size:40
Alignment explanation
Indices: 78557043--78557322 Score: 415
Period size: 40 Copynumber: 7.1 Consensus size: 40
78557033 TGAATGATAC
* * *
78557043 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
78557083 CC-GGCTAAGACCCGAAGGCATTTGT--GAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
78557120 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
78557160 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
78557200 CCGAGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
78557240 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
78557280 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
78557320 CCG
1 CCG
78557323 CTAAATTCCA
Statistics
Matches: 220, Mismatches: 16, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
37 10 0.05
38 24 0.11
39 21 0.10
40 165 0.75
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:78565405 original size:39 final size:40
Alignment explanation
Indices: 78565315--78565560 Score: 356
Period size: 40 Copynumber: 6.2 Consensus size: 40
78565305 TGAATGATAC
* * *
78565315 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
78565355 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTAT-T
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
78565394 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
78565434 CCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
78565473 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
78565513 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
78565553 CC-GGCTAA
1 CCGGGCTAA
78565561 ATTCCGAAGA
Statistics
Matches: 188, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 81 0.43
40 105 0.56
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:78565569 original size:79 final size:80
Alignment explanation
Indices: 78565315--78565560 Score: 356
Period size: 79 Copynumber: 3.1 Consensus size: 80
78565305 TGAATGATAC
* * *
78565315 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTT
78565379 GTGCGAGTTGTTAT-T
65 GTGCGAGTTGTTATAT
*
78565394 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGA-CCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
78565458 TGCGAGTTGTTATAT
66 TGCGAGTTGTTATAT
* * * *
78565473 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
** *
78565538 TGCTTGTGGTTATAT
66 TGCGAGTTGTTATAT
78565553 CC-GGCTAA
1 CCGGGCTAA
78565561 ATTCCGAAGA
Statistics
Matches: 152, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
78 26 0.17
79 98 0.64
80 28 0.18
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGTTATAT
Found at i:78570645 original size:17 final size:18
Alignment explanation
Indices: 78570623--78570659 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
78570613 AATATTTATT
78570623 TTAATATA-TTAAAATTA
1 TTAATATAGTTAAAATTA
*
78570640 TTAATATAGTTTAAATTA
1 TTAATATAGTTAAAATTA
78570658 TT
1 TT
78570660 TAAGAGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
TTAATATAGTTAAAATTA
Found at i:78570662 original size:19 final size:18
Alignment explanation
Indices: 78570622--78570662 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
78570612 TAATATTTAT
78570622 TTTAATATATTAAAATTA
1 TTTAATATATTAAAATTA
*
78570640 -TTAATATAGTTTAAATTA
1 TTTAATATA-TTAAAATTA
78570658 TTTAA
1 TTTAA
78570663 GAGATAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 8 0.40
18 8 0.40
19 4 0.20
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
TTTAATATATTAAAATTA
Found at i:78570918 original size:81 final size:78
Alignment explanation
Indices: 78570783--78570930 Score: 181
Period size: 81 Copynumber: 1.9 Consensus size: 78
78570773 GCATTAGACT
** *
78570783 TTTTCCCAAAATCAGTTCCCCCTTCCCCCCGAAATCCCAAAATTTGACAAGAAATCTCTTCT-TT
1 TTTTCCCAAAATCAGTTCCCCCTTCCCCAAGAAATCCCAAAATTTCACAAGAAATCTCTTCTCTT
78570847 TTCCCCTCCTTTC
66 TTCCCCTCCTTTC
* * ** *
78570860 TTTTCCCAAAATCGGTTCCCTCCCCTTCCCCAAAGAAATCCTAAAATTTCACCTGAAATTTCTTC
1 TTTTCCCAAAATCAGTT--C-CCCCTTCCCC-AAGAAATCCCAAAATTTCACAAGAAATCTCTTC
78570925 TCTTTT
62 TCTTTT
78570931 TTTCCCCATT
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
77 16 0.28
79 1 0.02
80 10 0.17
81 27 0.47
82 4 0.07
ACGTcount: A:0.24, C:0.35, G:0.05, T:0.35
Consensus pattern (78 bp):
TTTTCCCAAAATCAGTTCCCCCTTCCCCAAGAAATCCCAAAATTTCACAAGAAATCTCTTCTCTT
TTCCCCTCCTTTC
Found at i:78574766 original size:43 final size:43
Alignment explanation
Indices: 78574647--78574887 Score: 270
Period size: 43 Copynumber: 5.6 Consensus size: 43
78574637 ATAACTTTTT
* * *** * *
78574647 TAAAGGTCTTGATCTTTAGCGTTGTTTGTGAGAAAAGCGCCGC
1 TAAAGGTCATGATTTTTAGCGGCATTTGTGGGGAAAGCGCCGC
* * * *
78574690 TAAAGGTC-TGCTCTATAGCGGCGTTTGTGGGGAAAGCGCCGC
1 TAAAGGTCATGATTTTTAGCGGCATTTGTGGGGAAAGCGCCGC
*
78574732 TAAAGGTCATGATTTTTAGCGGCATTTGTGGGGAAAGTGCCGC
1 TAAAGGTCATGATTTTTAGCGGCATTTGTGGGGAAAGCGCCGC
* *
78574775 TAAAGGTCATGGTTTTTAGCAGCATTTGTGGGGAAAGCGCCGC
1 TAAAGGTCATGATTTTTAGCGGCATTTGTGGGGAAAGCGCCGC
* * * * * *
78574818 TAAAAGTTATGATTTTTAGCTGCGTTTGTAGGGAAAGCGCCAC
1 TAAAGGTCATGATTTTTAGCGGCATTTGTGGGGAAAGCGCCGC
*
78574861 TAAAGGTCATG-TTCTTTAGCGGAATTT
1 TAAAGGTCATGATT-TTTAGCGGCATTT
78574888 TTTTCATAAA
Statistics
Matches: 170, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
42 38 0.22
43 132 0.78
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.31
Consensus pattern (43 bp):
TAAAGGTCATGATTTTTAGCGGCATTTGTGGGGAAAGCGCCGC
Found at i:78584597 original size:22 final size:22
Alignment explanation
Indices: 78584555--78584598 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
78584545 AATTATTTAC
* *
78584555 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
78584577 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
78584599 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:78584899 original size:40 final size:40
Alignment explanation
Indices: 78584825--78585046 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
78584815 AACCCCAGTA
* *
78584825 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
78584864 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
78584904 CCTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
78584944 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
78584984 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
78585024 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
78585047 CATTCGAATA
Statistics
Matches: 169, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 12 0.07
40 154 0.91
41 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:78587228 original size:96 final size:99
Alignment explanation
Indices: 78587096--78587375 Score: 364
Period size: 96 Copynumber: 2.9 Consensus size: 99
78587086 TATTGGTGTT
* * *
78587096 GATGCCATGTTCCAAACATGGTCTTACACTGACTCACATATTGAGGCTGATGCCATTTCCTAGAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCTGATGCCATGTCCTAGAC
78587161 ATGGTCTTACACTAGCTCTCGTATAAA-T-G-AC
66 ATGGTCTTACACTAGCTCTCGTATAAATTGGTAC
78587192 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGG-TCGATGCCATGTCCTAGA
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCT-GATGCCATGTCCTAGA
* *
78587256 CATGGTCTTACACTGGCTCTC--ATAAATTGGTTCC
65 CATGGTCTTACACTAGCTCTCGTATAAATTGG-TAC
* * * * *
78587290 AATGCCATGTCCCAGACATGGTCTTACACTGG--CACATATCAAGGCCGATGCCATGTCAC-A-A
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCTGATGCCATGTC-CTAGA
*
78587351 AATGGTCTTACACTAGCTCTCGTAT
65 CATGGTCTTACACTAGCTCTCGTAT
78587376 CCCTAGTATC
Statistics
Matches: 163, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
94 5 0.03
95 22 0.13
96 103 0.63
97 3 0.02
98 30 0.18
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (99 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCTGATGCCATGTCCTAGAC
ATGGTCTTACACTAGCTCTCGTATAAATTGGTAC
Found at i:78587311 original size:50 final size:48
Alignment explanation
Indices: 78587096--78587369 Score: 236
Period size: 48 Copynumber: 5.7 Consensus size: 48
78587086 TATTGGTGTT
* * * * *
78587096 GATGCCATGTTCCAAACATGGTCTTACACTGACTCACATATTGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATTGAGTCC
* * * * * * * *
78587144 GATGCCATTTCCTAGACATGGTCTTACACTAGCTCTCGTA-TAAATGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATTGAGT-CC
* * *
78587192 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGT-C
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATTGA-GTCC
* *
78587240 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAATTG-GTTCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT--ATTGAG-TCC
* ** *
78587290 AATGCCATGTCCCAGACATGGTCTTACACTGG--CACATATCAAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATTGAGTCC
* * *
78587336 GATGCCATGTCACA-AAATGGTCTTACACTAGCTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC
78587370 TCGTATCCCT
Statistics
Matches: 178, Mismatches: 38, Indels: 21
0.75 0.16 0.09
Matches are distributed among these distances:
45 15 0.08
46 16 0.09
47 4 0.02
48 106 0.60
49 2 0.01
50 35 0.20
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATTGAGTCC
Found at i:78587512 original size:21 final size:19
Alignment explanation
Indices: 78587474--78587513 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
78587464 AAAATTGAGC
*
78587474 ATTTAATGCAATATCAATA
1 ATTTAATGCAATAACAATA
78587493 ATTTAATGCATAATAACAATA
1 ATTTAATGC--AATAACAATA
78587514 GAGTTGTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
21 9 0.50
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.35
Consensus pattern (19 bp):
ATTTAATGCAATAACAATA
Found at i:78592242 original size:27 final size:27
Alignment explanation
Indices: 78592204--78592265 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
78592194 CAGCAAATTT
*
78592204 GTGAGTTGCAAGCTAAAAGAGTACAAA
1 GTGAGTCGCAAGCTAAAAGAGTACAAA
78592231 GTGAGTCGCAAGCTAAAAGAGTACAAA
1 GTGAGTCGCAAGCTAAAAGAGTACAAA
78592258 GTGAGTCG
1 GTGAGTCG
78592266 ACTAGTGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.40, C:0.13, G:0.29, T:0.18
Consensus pattern (27 bp):
GTGAGTCGCAAGCTAAAAGAGTACAAA
Found at i:78593403 original size:13 final size:13
Alignment explanation
Indices: 78593385--78593410 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
78593375 ATATTATAAT
78593385 TATTTTATGTTAA
1 TATTTTATGTTAA
78593398 TATTTTATGTTAA
1 TATTTTATGTTAA
78593411 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:78595283 original size:39 final size:39
Alignment explanation
Indices: 78595202--78595392 Score: 301
Period size: 39 Copynumber: 4.9 Consensus size: 39
78595192 TATGGTAACC
* * * *
78595202 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
78595242 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
78595281 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
* * *
78595320 CGCACAATTGCCTTCGGGCTTAGCCTGGGTATTATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
78595359 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
78595393 CTCGAACATT
Statistics
Matches: 139, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 122 0.88
40 17 0.12
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:78598043 original size:40 final size:40
Alignment explanation
Indices: 78597970--78598149 Score: 287
Period size: 39 Copynumber: 4.6 Consensus size: 40
78597960 TATTCGGATG
*
78597970 ATATCCGGGCTAAGTCCC-AAGGCATTTGTGCTAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
78598009 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
78598049 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
78598088 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
78598128 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
78598150 TACTTGGGTT
Statistics
Matches: 133, Mismatches: 5, Indels: 6
0.92 0.03 0.04
Matches are distributed among these distances:
39 71 0.53
40 60 0.45
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:78598101 original size:79 final size:79
Alignment explanation
Indices: 78597970--78598149 Score: 283
Period size: 79 Copynumber: 2.3 Consensus size: 79
78597960 TATTCGGATG
* *
78597970 ATATCCGGGCTAAGTCCCAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCAT
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCAT
*
78598035 TTGTGCTAG-TGACT
66 TTGTGCGAGTTG-CT
*
78598049 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCAT
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCAT
78598114 TTGTGCGAGTTGCT
66 TTGTGCGAGTTGCT
*
78598128 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGT-CCGAAGG
78598150 TACTTGGGTT
Statistics
Matches: 94, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
78 7 0.07
79 85 0.90
80 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCAT
TTGTGCGAGTTGCT
Found at i:78604657 original size:13 final size:13
Alignment explanation
Indices: 78604639--78604664 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
78604629 ATATTATAAT
78604639 TATTTTATGTTAA
1 TATTTTATGTTAA
78604652 TATTTTATGTTAA
1 TATTTTATGTTAA
78604665 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:78606080 original size:40 final size:40
Alignment explanation
Indices: 78606025--78606206 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
78606015 TATTCGGATG
*
78606025 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
78606065 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
78606105 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
78606145 ATATCCGAGCTAAGTCCCAAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
78606185 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
78606207 TACTTGGGTT
Statistics
Matches: 133, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 13 0.10
40 118 0.89
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:78608431 original size:21 final size:21
Alignment explanation
Indices: 78608407--78608446 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
78608397 GTTATCAGTA
*
78608407 ATTCCATTTCATTTATATTAT
1 ATTCCATATCATTTATATTAT
*
78608428 ATTCTATATCATTTATATT
1 ATTCCATATCATTTATATT
78608447 TTTAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTCCATATCATTTATATTAT
Found at i:78610706 original size:26 final size:26
Alignment explanation
Indices: 78610677--78610727 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
78610667 ATCAATGATC
* *
78610677 AAATTAATCAAATG-ATTAAATAAAGT
1 AAATAAAT-AAATGAATTAAAGAAAGT
78610703 AAATAAATAAATGAATTAAAGAAAG
1 AAATAAATAAATGAATTAAAGAAAG
78610728 ACAAATGTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.63, C:0.02, G:0.10, T:0.25
Consensus pattern (26 bp):
AAATAAATAAATGAATTAAAGAAAGT
Found at i:78617223 original size:66 final size:68
Alignment explanation
Indices: 78617147--78617333 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
78617137 TAGTACCACT
*
78617147 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
78617209 CACG
65 CACG
78617213 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
78617278 ATCACG
63 ATCACG
78617284 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
78617334 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:78617258 original size:71 final size:71
Alignment explanation
Indices: 78617170--78617333 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78617160 CGATTTGTCT
78617170 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78617235 CTTTCA
66 CTTTCA
78617241 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78617306 CTTTCA
66 CTTTCA
78617312 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
78617334 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:78617371 original size:71 final size:70
Alignment explanation
Indices: 78617170--78617367 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
78617160 CGATTTGTCT
* * *
78617170 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
78617235 CTTTCA
65 CTTTCA
* * *
78617241 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
78617306 CTTTCA
65 CTTTCA
* *
78617312 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
78617368 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:78621849 original size:40 final size:39
Alignment explanation
Indices: 78621684--78621867 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
78621674 AAATTGAATG
* * *
78621684 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
78621724 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
78621764 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
78621804 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
78621843 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
78621868 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:78621892 original size:80 final size:81
Alignment explanation
Indices: 78621724--78621912 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
78621714 GCTGGAAATT
* * * *
78621724 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
78621789 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
78621805 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
78621868 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
78621884 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
78621913 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:78631265 original size:66 final size:68
Alignment explanation
Indices: 78631189--78631375 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
78631179 TAGTACCACT
*
78631189 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
78631251 CACG
65 CACG
78631255 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
78631320 ATCACG
63 ATCACG
78631326 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
78631376 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:78631300 original size:71 final size:71
Alignment explanation
Indices: 78631212--78631375 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78631202 CGATTTGTCT
78631212 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78631277 CTTTCA
66 CTTTCA
78631283 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78631348 CTTTCA
66 CTTTCA
78631354 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
78631376 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:78631413 original size:71 final size:70
Alignment explanation
Indices: 78631212--78631409 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
78631202 CGATTTGTCT
* * *
78631212 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
78631277 CTTTCA
65 CTTTCA
* * *
78631283 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
78631348 CTTTCA
65 CTTTCA
* *
78631354 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
78631410 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:78633172 original size:40 final size:39
Alignment explanation
Indices: 78633052--78633190 Score: 134
Period size: 40 Copynumber: 3.5 Consensus size: 39
78633042 AAATTATAAT
* * * * *
78633052 CGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG-TATATC
* * * *
78633092 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCAAGTC-GTATATC
*
78633132 CGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGT-ATATC
* * *
78633172 CGGGTTAAGTCCCGTAGGC
1 CGGGCTAAGACCCGAAGGC
78633191 CTTGGTGCGG
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 1 0.01
40 80 0.99
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.22
Consensus pattern (39 bp):
CGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGTATATC
Found at i:78633173 original size:80 final size:80
Alignment explanation
Indices: 78633052--78633235 Score: 183
Period size: 80 Copynumber: 2.3 Consensus size: 80
78633042 AAATTATAAT
* * * *
78633052 CGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCGT
1 CGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCGT
78633117 GCGAGTCATTCTATC
66 GCGAGTCATTCTATC
* * * * * * *
78633132 CGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTGG
1 CGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGCATTCG
* * * *
78633196 TGCGGGTTA-CCATAAC
65 TGCGAGTCATTC-TATC
* *
78633212 CGGGCTATGTCCCGAAGGCAATTG
1 CGGGCTAAGACCCGAAGGCAATTG
78633236 AACGAGTAGC
Statistics
Matches: 84, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
79 2 0.02
80 82 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (80 bp):
CGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCGT
GCGAGTCATTCTATC
Found at i:78636920 original size:46 final size:45
Alignment explanation
Indices: 78636864--78637034 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 45
78636854 ACACCATGTA
*
78636864 GCCGATGCATGTCCCAGACATGTCTTACACTGGTTTACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGTCT-CATCTCGAG
* * * * *
78636910 GCCGATGCATGTCCCATACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-GGTCTCATCTCGAG
* * * * * *
78636956 GTCGATGCCATATCCTAGACATGGACTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGG-TCTCAT-CTCGAG
78637004 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
78637035 AGCACACAAA
Statistics
Matches: 99, Mismatches: 21, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
46 51 0.52
47 27 0.27
48 20 0.20
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGTCTCATCTCGAG
Found at i:78636990 original size:94 final size:92
Alignment explanation
Indices: 78636866--78637037 Score: 231
Period size: 94 Copynumber: 1.8 Consensus size: 92
78636856 ACCATGTAGC
* * * * *
78636866 CGATGCATGTCCCAGACATGTCTTACACTGG-TTTACAT-CTCGAGGCCGATGCATGTCCCATAC
1 CGATGCATATCCCAGACATGACTTACACTGGCTCT-CATAAT-GAGGCCGATGCATGTCCCAGAC
78636929 ATGTCTTACACTAGCTCTCGTCTCAATGT
64 ATGTCTTACACTAGCTCTCGTCTCAATGT
* *
78636958 CGATGCCATATCCTAGACATGGACTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGAC
1 CGATG-CATATCCCAGACAT-GACTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGAC
78637023 ATGTCTTACACTAGC
64 ATGTCTTACACTAGC
78637038 ACACAAATAT
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 5 0.07
93 12 0.17
94 49 0.71
95 3 0.04
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (92 bp):
CGATGCATATCCCAGACATGACTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGACAT
GTCTTACACTAGCTCTCGTCTCAATGT
Found at i:78643782 original size:40 final size:40
Alignment explanation
Indices: 78643720--78643944 Score: 285
Period size: 40 Copynumber: 5.6 Consensus size: 40
78643710 TATTCAGATG
*
78643720 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
78643760 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
78643800 ATATCCGGGCGAAGTCCTGAAGGCATTTGTGCAAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
* * *
78643843 AGACCCGGGCTAAGTTCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
78643883 ATATCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
78643923 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
78643945 TACTTGGGTT
Statistics
Matches: 161, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 16 0.10
40 109 0.68
41 2 0.01
43 32 0.20
44 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:78647771 original size:47 final size:47
Alignment explanation
Indices: 78647702--78647841 Score: 217
Period size: 47 Copynumber: 3.0 Consensus size: 47
78647692 ATAGGGTATA
*
78647702 AAGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACGTT
1 AAGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGTT
* * *
78647749 AAGTCGATGCCATGTTCCAGACATGGTCTTACACTAACTTTCACGTT
1 AAGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGTT
* * *
78647796 AAGTCGATGCCATATCCCAGACATTGTCTTACATTGACTCTCACGT
1 AAGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGT
78647842 ATTCGTGCCG
Statistics
Matches: 83, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 83 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (47 bp):
AAGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGTT
Found at i:78647981 original size:46 final size:45
Alignment explanation
Indices: 78647897--78648067 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 45
78647887 TCATGTAGCC
* *
78647897 GATGCATATCCCAGACATGTCTTACATTGGCT-TACATCTCGAGGCT
1 GATGCATATCCCAGACATGTCTTACACTAGCTCT-CATCTCGAGG-T
* * **
78647943 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATAAT
1 GATGCATATCCCAGACATGTCTTACACTAGCTCTCATCTCGA-GGT
* * * *
78647989 GATACCATATCCCAAACATGTTCTTACACTAGCTCTCATAAT-GTGGT
1 GAT-GCATATCCCAGACATG-TCTTACACTAGCTCTCAT-CTCGAGGT
* *
78648036 CGGTGCATGTCCCAGACATGTCTTACACTAGC
1 -GATGCATATCCCAGACATGTCTTACACTAGC
78648068 GCACAAATAT
Statistics
Matches: 101, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
46 52 0.51
47 28 0.28
48 20 0.20
49 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (45 bp):
GATGCATATCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGT
Found at i:78651908 original size:23 final size:23
Alignment explanation
Indices: 78651882--78651940 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 23
78651872 ATCACAGCGT
* * *
78651882 AGTTGCTAATAGTAATGTAGCAA
1 AGTTACTAATAGTAACGCAGCAA
**
78651905 AGTTTTTAATAGTAACGCAGCAA
1 AGTTACTAATAGTAACGCAGCAA
*
78651928 AGCTACTAATAGT
1 AGTTACTAATAGT
78651941 GGTAAACGTG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.31
Consensus pattern (23 bp):
AGTTACTAATAGTAACGCAGCAA
Found at i:78665486 original size:1 final size:1
Alignment explanation
Indices: 78665480--78665506 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
78665470 TTAACATTAC
78665480 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
78665507 GGCATATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:78669006 original size:31 final size:30
Alignment explanation
Indices: 78668957--78669042 Score: 111
Period size: 31 Copynumber: 2.8 Consensus size: 30
78668947 TCAATCTCAG
78668957 CATAT-ACTGGGCCAAAGCCTTTACATTATT
1 CATATCACTGGGCC-AAGCCTTTACATTATT
* * *
78668987 CATGTCATTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCC-AAGCCTTTACATTATT
78669018 CATATCACTGGGCCAGAGCCTTTAC
1 CATATCACTGGGCCA-AGCCTTTAC
78669043 TGTAAATGAT
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
30 5 0.11
31 42 0.89
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (30 bp):
CATATCACTGGGCCAAGCCTTTACATTATT
Found at i:78669337 original size:26 final size:25
Alignment explanation
Indices: 78669260--78669355 Score: 165
Period size: 25 Copynumber: 3.8 Consensus size: 25
78669250 CCCTTTTAAT
*
78669260 AACTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
78669285 AACTGGGGCAAAGCCCTTTTCTGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
78669310 AACTGGGGCAAAGCCCTTTTTCGGTA
1 AACTGGGGCAAAGCCC-TTTTCGGTA
78669336 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
78669356 GCACTTCCTT
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
25 43 0.64
26 24 0.36
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:78669347 original size:51 final size:50
Alignment explanation
Indices: 78669260--78669355 Score: 174
Period size: 51 Copynumber: 1.9 Consensus size: 50
78669250 CCCTTTTAAT
78669260 AACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAAAGCCCTTTTCTGTA
1 AACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAAAGCCCTTTTCTGTA
*
78669310 AACTGGGGCAAAGCCCTTTTTCGGTAAACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCC-TTTTCGATAAACTGGGGCAAAGCCCTTTT
78669356 GCACTTCCTT
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
50 16 0.36
51 28 0.64
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (50 bp):
AACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAAAGCCCTTTTCTGTA
Found at i:78673562 original size:24 final size:24
Alignment explanation
Indices: 78673530--78673590 Score: 122
Period size: 24 Copynumber: 2.5 Consensus size: 24
78673520 AATCTCAAAT
78673530 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
78673554 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
78673578 GCACTATGTGTGC
1 GCACTATGTGTGC
78673591 AAACATAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:78675517 original size:21 final size:21
Alignment explanation
Indices: 78675491--78675542 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
78675481 GGAATCAAAC
78675491 AAGAAAATGAAAGAGAGAAAA
1 AAGAAAATGAAAGAGAGAAAA
* * * *
78675512 AAGAAATTGAGAGTGAGTAAA
1 AAGAAAATGAAAGAGAGAAAA
*
78675533 AAGAGAATGA
1 AAGAAAATGA
78675543 GTACGAAGAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.27, T:0.12
Consensus pattern (21 bp):
AAGAAAATGAAAGAGAGAAAA
Found at i:78675543 original size:21 final size:20
Alignment explanation
Indices: 78675495--78675556 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 20
78675485 TCAAACAAGA
*
78675495 AAATGAAAGAGAGAAAAAAG
1 AAATGAGAGAGAGAAAAAAG
* *
78675515 AAATTGAGAGTGAGTAAAAAG
1 AAA-TGAGAGAGAGAAAAAAG
78675536 AGAATGAGTACGA-AGAAAAAA
1 A-AATGAG-A-GAGAGAAAAAA
78675557 AAAGTGTGAG
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
20 3 0.09
21 19 0.58
22 10 0.30
23 1 0.03
ACGTcount: A:0.61, C:0.02, G:0.26, T:0.11
Consensus pattern (20 bp):
AAATGAGAGAGAGAAAAAAG
Found at i:78678145 original size:27 final size:27
Alignment explanation
Indices: 78678107--78678160 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
78678097 TTTTAGCGTT
78678107 TGAGAGCTTAATTGCGAAAAAGGACTA
1 TGAGAGCTTAATTGCGAAAAAGGACTA
*
78678134 TGAGAGCTTAATTGTGAAAAAGGACTA
1 TGAGAGCTTAATTGCGAAAAAGGACTA
78678161 AATCGCATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.41, C:0.09, G:0.26, T:0.24
Consensus pattern (27 bp):
TGAGAGCTTAATTGCGAAAAAGGACTA
Found at i:78685359 original size:45 final size:45
Alignment explanation
Indices: 78685285--78685490 Score: 146
Period size: 46 Copynumber: 4.5 Consensus size: 45
78685275 AAGAAAGCCT
* * **
78685285 TAATGTCTTTCATCCATGGTCTT-TCTTATTTCCATTGTGATGCCA
1 TAATGTCTTTCAACAATGGTCTTAT-TTATTTCCATCATGATGCCA
* * * *
78685330 TAATATCTTTCAACTATGGTCTTATTTATTTCTATCATGTTGCCA
1 TAATGTCTTTCAACAATGGTCTTATTTATTTCCATCATGATGCCA
* * * * *
78685375 TAGTGTCTTTCAACAATGGTCGTATCTATTTTCCGTCAT-ATTGTCA
1 TAATGTCTTTCAACAATGGTCTTATTTA-TTTCCATCATGA-TGCCA
* ** * * ** * * *
78685421 TAGTGTCTTTCAATTATGGTTTTATTCATTTTCTGTCTTGTTTCCA
1 TAATGTCTTTCAACAATGGTCTTATTTA-TTTCCATCATGATGCCA
*
78685467 TAGTGTCTTTCAACAATGGTCTTA
1 TAATGTCTTTCAACAATGGTCTTA
78685491 CACGTTCGAA
Statistics
Matches: 127, Mismatches: 30, Indels: 7
0.77 0.18 0.04
Matches are distributed among these distances:
45 59 0.46
46 68 0.54
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.48
Consensus pattern (45 bp):
TAATGTCTTTCAACAATGGTCTTATTTATTTCCATCATGATGCCA
Found at i:78685433 original size:46 final size:45
Alignment explanation
Indices: 78685335--78685490 Score: 172
Period size: 46 Copynumber: 3.4 Consensus size: 45
78685325 TGCCATAATA
* * *
78685335 TCTTTCAACTATGGTCTTATT-TATTTCTATCATGTTGCCATAGTG
1 TCTTTCAACAATGGTCTTATTAT-TTTCTGTCATGTTGTCATAGTG
* * *
78685380 TCTTTCAACAATGGTCGTATCTATTTTCCGTCATATTGTCATAGTG
1 TCTTTCAACAATGGTCTTAT-TATTTTCTGTCATGTTGTCATAGTG
** * *
78685426 TCTTTCAATTATGGTTTTATTCATTTTCTGTCTTGTT-TCCATAGTG
1 TCTTTCAACAATGGTCTTATT-ATTTTCTGTCATGTTGT-CATAGTG
78685472 TCTTTCAACAATGGTCTTA
1 TCTTTCAACAATGGTCTTA
78685491 CACGTTCGAA
Statistics
Matches: 91, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
45 20 0.22
46 70 0.77
47 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (45 bp):
TCTTTCAACAATGGTCTTATTATTTTCTGTCATGTTGTCATAGTG
Found at i:78685559 original size:45 final size:45
Alignment explanation
Indices: 78685464--78685568 Score: 124
Period size: 45 Copynumber: 2.3 Consensus size: 45
78685454 TGTCTTGTTT
* *
78685464 CCATAGTGTCTTTCAACAATGGTCTTACACGTTCGAATCGTGATG
1 CCATAGTGTCTTTCAACAACGGTCTTACACGTTCGAATCGTGATA
* * * *
78685509 TCATAGCT-TCTTTCAACTACGGTCTTACTCGTTTGAA-CTGTGATA
1 CCATAG-TGTCTTTCAACAACGGTCTTACACGTTCGAATC-GTGATA
78685554 CCATAGTGTCTTTCA
1 CCATAGTGTCTTTCA
78685569 GCTATGGTTG
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
44 2 0.04
45 47 0.94
46 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (45 bp):
CCATAGTGTCTTTCAACAACGGTCTTACACGTTCGAATCGTGATA
Found at i:78695247 original size:12 final size:12
Alignment explanation
Indices: 78695198--78695248 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
78695188 TCCATTTGTC
78695198 TTTATGTTTATT
1 TTTATGTTTATT
*
78695210 GTTAT-TGTTATT
1 TTTATGT-TTATT
* *
78695222 TTTATTTTTCTT
1 TTTATGTTTATT
*
78695234 TTTATGATTATT
1 TTTATGTTTATT
78695246 TTT
1 TTT
78695249 TCTTTATATT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
11 1 0.03
12 29 0.94
13 1 0.03
ACGTcount: A:0.16, C:0.02, G:0.08, T:0.75
Consensus pattern (12 bp):
TTTATGTTTATT
Found at i:78699938 original size:7 final size:7
Alignment explanation
Indices: 78699923--78699975 Score: 52
Period size: 7 Copynumber: 7.6 Consensus size: 7
78699913 GATAAGGTCG
*
78699923 AACCTTA
1 AACCCTA
78699930 AACCCTA
1 AACCCTA
*
78699937 AACCTTA
1 AACCCTA
***
78699944 AAATTTA
1 AACCCTA
78699951 AACCCTA
1 AACCCTA
78699958 AACCCTA
1 AACCCTA
*
78699965 AACCCTG
1 AACCCTA
78699972 AACC
1 AACC
78699976 TCCATCAAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.43, C:0.34, G:0.02, T:0.21
Consensus pattern (7 bp):
AACCCTA
Found at i:78699953 original size:21 final size:21
Alignment explanation
Indices: 78699927--78699966 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
78699917 AGGTCGAACC
*
78699927 TTAAACCCTAAACCTTAAAAT
1 TTAAACCCTAAACCCTAAAAT
78699948 TTAAACCCTAAACCCTAAA
1 TTAAACCCTAAACCCTAAA
78699967 CCCTGAACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (21 bp):
TTAAACCCTAAACCCTAAAAT
Found at i:78705753 original size:21 final size:19
Alignment explanation
Indices: 78705691--78705754 Score: 56
Period size: 21 Copynumber: 3.1 Consensus size: 19
78705681 ATTTAATTAG
*
78705691 AATATATAAACTATATTTTA
1 AATATTTAAA-TATATTTTA
*
78705711 AATATTTAAATATAACTATTA
1 AATATTTAAATAT-A-TTTTA
*
78705732 AATATTTTAATTAGTATTTTA
1 AATA-TTTAAATA-TATTTTA
78705753 AA
1 AA
78705755 AAATATTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
19 3 0.08
20 10 0.28
21 14 0.39
22 8 0.22
23 1 0.03
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (19 bp):
AATATTTAAATATATTTTA
Found at i:78710984 original size:47 final size:47
Alignment explanation
Indices: 78710924--78711092 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
78710914 GCATTGGCAC
* *
78710924 TAAGACAAGGATACCATGTAATACCATGTTTGGAACATGGTATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
78710971 TAAGACAAAGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
78711018 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATAGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* * *
78711065 TAAGATAAGGATATCATGTAAGGCCATG
1 TAAGACAAGGATACCATGTAAGACCATG
78711093 CCAAGGCATG
Statistics
Matches: 114, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 114 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.27
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:78711136 original size:54 final size:56
Alignment explanation
Indices: 78711071--78711217 Score: 192
Period size: 54 Copynumber: 2.7 Consensus size: 56
78711061 TTGGTAAGAT
* *
78711071 AAGGATATCATGTAAGGCCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGG-C
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTATAAGGAA
* * * *
78711125 AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTACTATATGGAA
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTATAAGGAA
** *
78711181 AAGG-TCCCATGTAAGACCAAGCCAAGGCATGGCATTG
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTG
78711218 GGGAGATACC
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
54 41 0.51
55 35 0.44
56 4 0.05
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (56 bp):
AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTATAAGGAA
Found at i:78711205 original size:55 final size:54
Alignment explanation
Indices: 78711079--78711217 Score: 172
Period size: 55 Copynumber: 2.6 Consensus size: 54
78711069 ATAAGGATAT
* * *
78711079 CATGTAAGGCCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAAT
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAGGAAAC
* * * **
78711133 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTACTATATGGAAAAGG-TCC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGG-AAAGGAAAC
*
78711188 CATGTAAGACCAAGCCAAGGCATGGCATTG
1 CATGTAAGACCATGCCAAGGCATGGCATTG
78711218 GGGAGATACC
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
54 34 0.47
55 35 0.48
56 4 0.05
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.22
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAGGAAAC
Found at i:78716117 original size:40 final size:40
Alignment explanation
Indices: 78716034--78716201 Score: 146
Period size: 40 Copynumber: 4.2 Consensus size: 40
78716024 AAATTGAATA
* * ** *
78716034 ATATCCGGGCTAAG-CCCTGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCC-GAAGGCAATTGTGC-GAGTGACT
* * *
78716074 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
* * *
78716114 ATATCCGGGCTAAGACCCGAAGGC-ATTCATGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGACT
* * *
78716154 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGACT
78716194 ATATCCGG
1 ATATCCGG
78716202 TTATATTCCG
Statistics
Matches: 104, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
39 4 0.04
40 95 0.91
41 5 0.05
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
Found at i:78720256 original size:90 final size:90
Alignment explanation
Indices: 78720091--78720257 Score: 194
Period size: 90 Copynumber: 1.9 Consensus size: 90
78720081 AATGCCAAAT
* * * * *
78720091 CCATGTCCCAGACATGGTCTTACATGGGTCTACTTATCGATGCCATCTCCTAGATATGGTCTTAT
1 CCATATCCCAGACATGATCTTACATGGGTCTACATATCGATGCCATCTCCTAGACATGGTCTTAC
*
78720156 ACGAAGTCTCATGTCGGTGCCGATA
66 ACGAAATCTCATGTCGGTGCCGATA
* ** *
78720181 CCATATCCCAGACATGATCTTACATGGGATCT-CATATTGATGTTATGTCGC-AGACATGGTCTT
1 CCATATCCCAGACATGATCTTACATGGG-TCTACATATCGATGCCATCTC-CTAGACATGGTCTT
* *
78720244 GCATGAAATCTCAT
64 ACACGAAATCTCAT
78720258 ATCAGCGCCA
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
90 59 0.94
91 4 0.06
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.32
Consensus pattern (90 bp):
CCATATCCCAGACATGATCTTACATGGGTCTACATATCGATGCCATCTCCTAGACATGGTCTTAC
ACGAAATCTCATGTCGGTGCCGATA
Found at i:78728925 original size:43 final size:43
Alignment explanation
Indices: 78728766--78728923 Score: 174
Period size: 43 Copynumber: 3.7 Consensus size: 43
78728756 GTTATCGAGA
* *
78728766 TGTGATTACATGTAAGACCATGTATGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
78728809 TTTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
*** * * * *
78728852 TGTGATTTTGTGTAAGACCTTGTCTAGGATAGTGGCATCGGTA-
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATC-GTAT
* *
78728895 TGTGATAACATGTAAGACCATATCTGGGA
1 TGTGATTACATGTAAGACCATGTCTGGGA
78728924 TATGGCACTG
Statistics
Matches: 94, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
43 92 0.98
44 2 0.02
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:78731533 original size:27 final size:27
Alignment explanation
Indices: 78731501--78731553 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
78731491 GTTCCTAACT
78731501 TCAAATATAATCACCACATAGGTTCAC
1 TCAAATATAATCACCACATAGGTTCAC
78731528 TCAAATATAATCACCACATAGGTTCA
1 TCAAATATAATCACCACATAGGTTCA
78731554 AGACTTACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.42, C:0.25, G:0.08, T:0.26
Consensus pattern (27 bp):
TCAAATATAATCACCACATAGGTTCAC
Found at i:78731729 original size:28 final size:28
Alignment explanation
Indices: 78731697--78731766 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
78731687 ATAGTAAGTC
*
78731697 CGCACACTTAGTGCT-TAATAGTCAAACT
1 CGCACACTTAGTGCTAT-ATAATCAAACT
*
78731725 CGCACACTTAGTGCTATATAATTAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
78731753 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78731767 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:78735679 original size:17 final size:17
Alignment explanation
Indices: 78735657--78735690 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
78735647 TCATACCAAG
78735657 TTTGAAAGCCGAAAAGC
1 TTTGAAAGCCGAAAAGC
78735674 TTTGAAAGCCGAAAAGC
1 TTTGAAAGCCGAAAAGC
78735691 CGAATCTTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.18
Consensus pattern (17 bp):
TTTGAAAGCCGAAAAGC
Found at i:78736494 original size:29 final size:28
Alignment explanation
Indices: 78736461--78736556 Score: 86
Period size: 29 Copynumber: 3.4 Consensus size: 28
78736451 GTGAGCATGA
* *
78736461 ATATGCATGTGATTTGGGCCTAATTGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* * *
78736490 ATATGAATATCAATTGGGCCTGATGGGCC
1 ATATGAATGT-GATTGGGCCTAATGGGCC
* *
78736519 ATATAAATGAGATTGGGCC-AAGTGGGCC
1 ATATGAATGTGATTGGGCCTAA-TGGGCC
*
78736547 ATATGCATGT
1 ATATGAATGT
78736557 ATGTAGGGGT
Statistics
Matches: 52, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
27 1 0.02
28 21 0.40
29 29 0.56
30 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:78739138 original size:30 final size:30
Alignment explanation
Indices: 78739102--78739202 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
78739092 GACAAGATTG
* * *
78739102 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
78739132 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
78739160 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
78739189 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
78739203 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:78739214 original size:29 final size:28
Alignment explanation
Indices: 78739131--78739206 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
78739121 AAAATTGTAC
* *
78739131 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
78739159 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
78739188 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
78739207 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Done.