Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 256 of 410
Found at i:79070242 original size:56 final size:54
Alignment explanation
Indices: 79070152--79070271 Score: 141
Period size: 56 Copynumber: 2.2 Consensus size: 54
79070142 TCTATAAACC
* * *
79070152 AAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCCATAATTTTTAGAAAGTT
1 AAGGGTATTTCAGTAACTTTGTAAACCAAGGGTATTTCCATAA-TTTTACAAA-TT
* * * ***
79070208 AAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTCAGTAACTTTGTAAACCAAGGGTATTTCCATAATTTTACAAATT
79070262 AAGGGTATTT
1 AAGGGTATTT
79070272 TGGTAATTTC
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 12 0.22
55 8 0.15
56 35 0.64
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (54 bp):
AAGGGTATTTCAGTAACTTTGTAAACCAAGGGTATTTCCATAATTTTACAAATT
Found at i:79070429 original size:27 final size:27
Alignment explanation
Indices: 79070237--79070527 Score: 210
Period size: 27 Copynumber: 10.8 Consensus size: 27
79070227 TGTAAATCAG
**
79070237 GGGTATTTTGGTAATTTTACAAATTAA
1 GGGTATTTTGGTAATTTTACAAATCGA
* *
79070264 GGGTATTTTGGTAATTTCACAAA-CCA
1 GGGTATTTTGGTAATTTTACAAATCGA
*
79070290 GTGGTATTTTGGTAATTTTACAAA-CTA
1 G-GGTATTTTGGTAATTTTACAAATCGA
* *
79070317 GGAGTATTTTGGCAATTTTACAAATTGA
1 GG-GTATTTTGGTAATTTTACAAATCGA
* * * * *
79070345 GGGTATTTTAGCAATTTTATAGA-CTA
1 GGGTATTTTGGTAATTTTACAAATCGA
**
79070371 GGGTATTTTGGTAATTTTACTGATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
** *
79070398 GGGTATTTTGGTAATTTTGTAAACCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
* * ** *
79070425 TGGTATTTTAGTAATTTTGTAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCGA
***** * *
79070452 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
**** * * *
79070479 GGGTAAAACGGTAATTCTATAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCGA
*
79070506 GGGTACTTTGGTAATTTTACAA
1 GGGTATTTTGGTAATTTTACAA
79070528 TTTGAGGGAA
Statistics
Matches: 217, Mismatches: 43, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
26 23 0.11
27 191 0.88
28 3 0.01
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCGA
Found at i:79077619 original size:78 final size:80
Alignment explanation
Indices: 79077444--79077628 Score: 245
Period size: 78 Copynumber: 2.4 Consensus size: 80
79077434 AAATTAAAGA
** * *
79077444 TAAAAT-AAATCCGTTTCAGGATTGATTTCCACTGTTCAACGATTCTTTTCCAAAATTTTGATTT
1 TAAAATAAAATCCGTTTTGGGATTGATTCCCACCGTTCAACGATTCTTTTCCAAAATTTTGATTT
79077508 ATTTCCAAAAACGAG
66 ATTTCCAAAAACGAG
*
79077523 TAAAATAAAATCCGTTTTGGGATTGATTCCCGCCGTTCAACGATT-TTATTCC-AAA-TTTGATT
1 TAAAATAAAATCCGTTTTGGGATTGATTCCCACCGTTCAACGATTCTT-TTCCAAAATTTTGA-T
* *
79077585 TTATTTCC-GAAATGAG
64 TTATTTCCAAAAACGAG
*
79077601 TAAAATAAAATCCATTTTGGGATTGATT
1 TAAAATAAAATCCGTTTTGGGATTGATT
79077629 TTTCTTCCAA
Statistics
Matches: 95, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
78 38 0.40
79 20 0.21
80 37 0.39
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (80 bp):
TAAAATAAAATCCGTTTTGGGATTGATTCCCACCGTTCAACGATTCTTTTCCAAAATTTTGATTT
ATTTCCAAAAACGAG
Found at i:79077661 original size:62 final size:62
Alignment explanation
Indices: 79077566--79077690 Score: 189
Period size: 62 Copynumber: 2.0 Consensus size: 62
79077556 CGTTCAACGA
* *
79077566 TTTTATTCCAAATTTGATTTTATTTCCGAAATGAGTAAAATAAAATCCATTTTGGGATTGAT
1 TTTTATTCCAAATTTGATTTTATTTCCAAAATGAGTAAAATAAAATCCATTTCGGGATTGAT
* * *
79077628 TTTTCTTCCAAATTT-TTTTTATTTCCAAAAATGAGTAAAATAAAATCCGTTTCGGGATTGAT
1 TTTTATTCCAAATTTGATTTTATTTCC-AAAATGAGTAAAATAAAATCCATTTCGGGATTGAT
79077690 T
1 T
79077691 CTCGCGATTC
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
61 10 0.18
62 47 0.82
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.44
Consensus pattern (62 bp):
TTTTATTCCAAATTTGATTTTATTTCCAAAATGAGTAAAATAAAATCCATTTCGGGATTGAT
Found at i:79077811 original size:86 final size:85
Alignment explanation
Indices: 79077665--79077972 Score: 302
Period size: 86 Copynumber: 3.6 Consensus size: 85
79077655 AAAATGAGTA
** * * * * ***
79077665 AAATAAAATCCGTTTCGGGATTGATTCTCGCGATTCAA-CAGATTTATTACATTTTGATTTTGTT
1 AAATAAAATATGTTTCGGGATTTATTCTCGCCATTTAATAAGATTTATTTTGTTTT-ATTTTGTT
*
79077729 GCCAAAAACGAGAAATTAAATT
65 -CCAAAAATGAGAAATTAAATT
* * *
79077751 AAATAAAATCTATTTTGGGATTTATTCTCGCCATTTAATAAGATTTATTTTGTTTTATTTTGTTT
1 AAATAAAATATGTTTCGGGATTTATTCTCGCCATTTAATAAGATTTATTTTGTTTTATTTTG-TT
79077816 CCAAAAATGAGAAATTAAATT
65 CCAAAAATGAGAAATTAAATT
* * ***
79077837 AAATTAAATATGTTTTGGGATTTATTCTCGTTGTTTAATAAGATTT-TATTTGATTTTATTTTGT
1 AAATAAAATATGTTTCGGGATTTATTCTCGCCATTTAATAAGATTTAT-TTTG-TTTTATTTTGT
* * *
79077901 T-TACAAATTAG-AATTAAATT
64 TCCAAAAATGAGAAATTAAATT
* * * *
79077921 AAATAAAATATGTTTCAGGAGTTATTCCCACCATTTAAT-AGATTTTATTTTG
1 AAATAAAATATGTTTCGGGATTTATTCTCGCCATTTAATAAGA-TTTATTTTG
79077973 ATATAATTTT
Statistics
Matches: 187, Mismatches: 29, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
83 3 0.02
84 46 0.25
85 9 0.05
86 104 0.56
87 25 0.13
ACGTcount: A:0.34, C:0.09, G:0.12, T:0.44
Consensus pattern (85 bp):
AAATAAAATATGTTTCGGGATTTATTCTCGCCATTTAATAAGATTTATTTTGTTTTATTTTGTTC
CAAAAATGAGAAATTAAATT
Found at i:79077958 original size:84 final size:87
Alignment explanation
Indices: 79077715--79077987 Score: 324
Period size: 86 Copynumber: 3.2 Consensus size: 87
79077705 GATTTATTAC
* * * *
79077715 ATTTTGATTTTGTTGCCAAAAACGAGAAATTAAATTAAATAAAATCTATTTTGGGATTTATTCTC
1 ATTTT-ATTTTGTT-TCAAAAATGAGAAATTAAATTAAATAAAATATGTTTTGGGATTTATTCTC
79077780 GCCATTTAATAAGA-TTTATTTTG
64 GCCATTTAATAAGATTTTATTTTG
*
79077803 -TTTTATTTTGTTTCCAAAAATGAGAAATTAAATTAAATTAAATATGTTTTGGGATTTATTCTCG
1 ATTTTATTTTGTTT-CAAAAATGAGAAATTAAATTAAATAAAATATGTTTTGGGATTTATTCTCG
***
79077867 TTGTTTAATAAGATTTTA-TTTG
65 CCATTTAATAAGATTTTATTTTG
* * ** * * *
79077889 ATTTTATTTTGTTT-ACAAATTAG-AATTAAATTAAATAAAATATGTTTCAGGAGTTATTCCCAC
1 ATTTTATTTTGTTTCAAAAATGAGAAATTAAATTAAATAAAATATGTTTTGGGATTTATTCTCGC
79077952 CATTTAAT-AGATTTTATTTTG
66 CATTTAATAAGATTTTATTTTG
* *
79077973 ATATAATTTTGTTTC
1 ATTTTATTTTGTTTC
79077988 GGGATTTAGT
Statistics
Matches: 159, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
83 8 0.05
84 55 0.35
85 7 0.04
86 68 0.43
87 21 0.13
ACGTcount: A:0.34, C:0.07, G:0.11, T:0.47
Consensus pattern (87 bp):
ATTTTATTTTGTTTCAAAAATGAGAAATTAAATTAAATAAAATATGTTTTGGGATTTATTCTCGC
CATTTAATAAGATTTTATTTTG
Found at i:79082804 original size:47 final size:48
Alignment explanation
Indices: 79082728--79082861 Score: 148
Period size: 47 Copynumber: 2.8 Consensus size: 48
79082718 TAGGGTAAGG
* *
79082728 TGCCGATGCCATGTCCTAGACACTGTCTTACACTGGCTCAT-ATATCAA
1 TGCCGATGCCATGTCCCAGACA-TGTCTTACACTAGCTCATCATATCAA
* * * *
79082776 -GTCGATGCCATGTCCCAGACATGATCTTACACTAGC-CCTCGTCTCAA
1 TGCCGATGCCATGTCCCAGACATG-TCTTACACTAGCTCATCATATCAA
* *
79082823 TGCCAATTCCATGTCCCAGACATGGTCTTACACTAGCTC
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTC
79082862 TCACAAATGA
Statistics
Matches: 72, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
46 4 0.06
47 35 0.49
48 31 0.43
49 2 0.03
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCATCATATCAA
Found at i:79083420 original size:23 final size:23
Alignment explanation
Indices: 79083393--79083437 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
79083383 CACATTAATC
79083393 CTTTTAGGTGTTTTCATGCTAAA
1 CTTTTAGGTGTTTTCATGCTAAA
79083416 CTTTTAGGTGTTTTCATGCTAA
1 CTTTTAGGTGTTTTCATGCTAA
79083438 CACCTTTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.20, C:0.13, G:0.18, T:0.49
Consensus pattern (23 bp):
CTTTTAGGTGTTTTCATGCTAAA
Found at i:79085851 original size:40 final size:40
Alignment explanation
Indices: 79085806--79085973 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
79085796 CGGAATATAA
*
79085806 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCCTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
79085846 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
79085886 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
79085926 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
79085966 CCGGATAT
1 CCGGATAT
79085974 CATTCAATTT
Statistics
Matches: 106, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 105 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:79088482 original size:20 final size:20
Alignment explanation
Indices: 79088444--79088482 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
79088434 TAGACAAATA
*
79088444 TAATATTCTTGTATTTCATG
1 TAATATTCTTGTATGTCATG
79088464 TAATATTCTT-TCATGTCAT
1 TAATATTCTTGT-ATGTCAT
79088483 ATTTCCATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.26, C:0.13, G:0.08, T:0.54
Consensus pattern (20 bp):
TAATATTCTTGTATGTCATG
Found at i:79088571 original size:45 final size:45
Alignment explanation
Indices: 79088507--79088596 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
79088497 TGTATCCTTC
79088507 CATGTCAATTTGTTTTAAATTCATCTTTGCCCCTGTCAGAACTTT
1 CATGTCAATTTGTTTTAAATTCATCTTTGCCCCTGTCAGAACTTT
79088552 CATGTCAATTTGTTTTAAATTCATCTTTGCCCCTGTCAGAACTTT
1 CATGTCAATTTGTTTTAAATTCATCTTTGCCCCTGTCAGAACTTT
79088597 ACCAGTTGAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (45 bp):
CATGTCAATTTGTTTTAAATTCATCTTTGCCCCTGTCAGAACTTT
Found at i:79093422 original size:49 final size:49
Alignment explanation
Indices: 79093362--79093533 Score: 263
Period size: 49 Copynumber: 3.5 Consensus size: 49
79093352 TACATATATG
* * * *
79093362 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
* *
79093411 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
* *
79093460 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
*
79093509 TGTGATAAGGCCTAATGGCTAATGT
1 TGTGATAAGGCCTAATGGCCAATGT
79093534 AAAATATATG
Statistics
Matches: 114, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 114 1.00
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:79093679 original size:37 final size:37
Alignment explanation
Indices: 79093629--79093713 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
79093619 GGAATATGTT
*
79093629 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
79093666 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
79093703 CCGGGTAAGAC
1 CCGGGTAAGAC
79093714 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:79095211 original size:28 final size:29
Alignment explanation
Indices: 79095144--79095215 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
79095134 ATAGTGAATC
*
79095144 CGCACACTTAGTGCTATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATTCAACT
79095173 CGCACACTTAGTGCTATATA-A-TCAAACT
1 CGCACACTTAGTGCTATATATATTC-AACT
79095201 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
79095216 GTACAATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATATTCAACT
Found at i:79095237 original size:30 final size:28
Alignment explanation
Indices: 79095143--79095244 Score: 89
Period size: 28 Copynumber: 3.5 Consensus size: 28
79095133 TATAGTGAAT
* *
79095143 CCGCACACTTAGTGCTATATATATTC-AGC
1 CCGCACACTTAGTGCTATACA-A-TCAAAC
* *
79095172 TCGCACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* * *
79095200 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATACAA--TCAAAC
*
79095230 CCGCACACTCAGTGC
1 CCGCACACTTAGTGC
79095245 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.37
29 20 0.32
30 18 0.29
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATACAATCAAAC
Found at i:79098730 original size:40 final size:40
Alignment explanation
Indices: 79098648--79098732 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
79098638 GAGAATTGAG
** * * *
79098648 AGTGATGTATCCGGACTAAGTTCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGCCCCAAAGAGCAATCATACT
* * *
79098688 AGTGATGTATCCGGGCTAGGCCCCGAAGAGCAATCATACT
1 AGTGATGTATCCGGACTAAGCCCCAAAGAGCAATCATACT
79098728 AGTGA
1 AGTGA
79098733 CGTGTATTCG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGCCCCAAAGAGCAATCATACT
Found at i:79098971 original size:29 final size:29
Alignment explanation
Indices: 79098929--79099124 Score: 365
Period size: 29 Copynumber: 6.8 Consensus size: 29
79098919 GCGAATGATT
79098929 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
79098958 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
79098987 GAGGCACTATGTGTACGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
79099016 GAGGCACCATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
79099045 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
79099074 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
79099103 GAGGCACTATGTGTGCGAGATC
1 GAGGCACTATGTGTGCGAGATC
79099125 TGTGACAGCC
Statistics
Matches: 162, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 162 1.00
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:79100889 original size:39 final size:39
Alignment explanation
Indices: 79100835--79100997 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
79100825 TGTGAATGAA
79100835 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
79100874 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** * *
79100913 TGTGCGAGCTATGATATCTGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
79100952 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
79100992 TGTGCG
1 TGTGCG
79100998 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:79101014 original size:78 final size:77
Alignment explanation
Indices: 79100853--79101026 Score: 240
Period size: 78 Copynumber: 2.2 Consensus size: 77
79100843 TTGTGATATC
79100853 CGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC
1 CGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC
** *
79100918 GAGCTATGATAT
66 GAGCTACCATAA
* * *
79100930 CTGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 C-GGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGT
* *
79100995 GCGGGTTACCATAA
64 GCGAGCTACCATAA
*
79101009 CGGGCTATGTCCCGAAGG
1 CGGGCTAAG-CCCGAAGG
79101027 TGTTTTGAAC
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
77 1 0.01
78 52 0.61
79 32 0.38
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (77 bp):
CGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC
GAGCTACCATAA
Found at i:79108421 original size:40 final size:40
Alignment explanation
Indices: 79108347--79108492 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
79108337 CCGCACCAAG
* * * * * *
79108347 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
79108387 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
79108427 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
79108467 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
79108493 TTTCCAGCAT
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:79108507 original size:40 final size:40
Alignment explanation
Indices: 79108379--79108530 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
79108369 ATCACGATTT
* * * **
79108379 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
79108419 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * * *
79108459 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * *
79108499 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
79108531 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.02
40 91 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
Found at i:79116506 original size:40 final size:40
Alignment explanation
Indices: 79116432--79116577 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
79116422 CCGCACCAAG
* * * * * *
79116432 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
79116472 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
79116512 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
79116552 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
79116578 TTTCCAGCAT
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:79116592 original size:40 final size:40
Alignment explanation
Indices: 79116464--79116615 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
79116454 ATCACGATTT
* * * **
79116464 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
79116504 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * * *
79116544 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * *
79116584 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
79116616 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.02
40 91 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
Found at i:79120640 original size:198 final size:199
Alignment explanation
Indices: 79120390--79120787 Score: 762
Period size: 198 Copynumber: 2.0 Consensus size: 199
79120380 TCCTTCACTT
79120390 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATA
1 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATA
*
79120455 GTATCACCCATGGGACCTAGCTACATCATAATGTCTTGTAGCTCTC-TTGTACACATGATGTGCA
66 GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTTGTACACATGATGTGCA
*
79120519 CTCAGCACTATACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCGAAGGTTCAA
131 CTCAGCACTATACATGTGACCTAGCTACATACCATCTATATCATCCAATCTTTCCGAAGGTTCAA
79120584 CCGG
196 CCGG
*
79120588 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTTTCTACATGGTGTACACATA
1 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATA
79120653 GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTTGTACACATGATGTGCA
66 GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTTGTACACATGATGTGCA
79120718 CTCAGCACTATACATGTGACCTAGCTACATACCATCTATATCATCCAATCTTTCCGAAGGTTCAA
131 CTCAGCACTATACATGTGACCTAGCTACATACCATCTATATCATCCAATCTTTCCGAAGGTTCAA
79120783 CCGG
196 CCGG
79120787 G
1 G
79120788 ATTTCTCTCT
Statistics
Matches: 196, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
198 109 0.56
199 87 0.44
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (199 bp):
GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATA
GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTTGTACACATGATGTGCA
CTCAGCACTATACATGTGACCTAGCTACATACCATCTATATCATCCAATCTTTCCGAAGGTTCAA
CCGG
Found at i:79121448 original size:30 final size:30
Alignment explanation
Indices: 79121414--79121474 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
79121404 TCATTAACTC
79121414 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
79121444 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
79121474 A
1 A
79121475 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:79125516 original size:43 final size:44
Alignment explanation
Indices: 79125469--79125585 Score: 139
Period size: 44 Copynumber: 2.7 Consensus size: 44
79125459 TGATGTCACC
* * * *
79125469 GTCCCAGACAGGGTCTTATACGAAATCA-TATAACGA-TGCCAAT
1 GTCCCAGACATGGTCTTACACGAAATCACAAT-ACAATTGCCAAT
* *
79125512 GTCCCAGACATGGTCTTACACGTAATCACAATACAATTGTCAAT
1 GTCCCAGACATGGTCTTACACGAAATCACAATACAATTGCCAAT
* *
79125556 GTCCCAGACATGGTCTTACATGTAATCACA
1 GTCCCAGACATGGTCTTACACGAAATCACA
79125586 TCTCAGTAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
43 28 0.43
44 37 0.57
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (44 bp):
GTCCCAGACATGGTCTTACACGAAATCACAATACAATTGCCAAT
Found at i:79125564 original size:44 final size:44
Alignment explanation
Indices: 79125416--79125585 Score: 150
Period size: 43 Copynumber: 3.9 Consensus size: 44
79125406 TAAAGCTCGT
* * * *
79125416 ACAATGCC-ATGTCCCAGATATGGTCTTAGATGTTATCAC-ATA
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATA
*** * ** * * * *
79125458 TTGATGTCACCGTCCCAGACAGGGTCTTATACGAAATCA-TATA
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATA
*
79125501 ACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAT-
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATA
* *
79125544 ACAATTGTCAATGTCCCAGACATGGTCTTACATGTAATCACA
1 ACAA-TGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
79125586 TCTCAGTAAT
Statistics
Matches: 100, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
42 4 0.04
43 59 0.59
44 37 0.37
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (44 bp):
ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATA
Found at i:79131939 original size:33 final size:35
Alignment explanation
Indices: 79131902--79131998 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
79131892 ATAGTTATAT
79131902 TTAAATATTTAAAATATAATTTATATATT-C-TAA
1 TTAAATATTTAAAATATAATTTATATATTGCTTAA
* *
79131935 TTAAAT-TTTATAA-ATAATTAATATTTATTGCTTAA
1 TTAAATATTTAAAATATAATT--TATATATTGCTTAA
*
79131970 --AAATATTTAAAATTTATATTTTATATATT
1 TTAAATATTTAAAA--TATAATTTATATATT
79131999 AAAATATTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 6 0.12
32 6 0.12
33 17 0.33
34 7 0.14
35 10 0.20
37 5 0.10
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.52
Consensus pattern (35 bp):
TTAAATATTTAAAATATAATTTATATATTGCTTAA
Found at i:79132232 original size:13 final size:13
Alignment explanation
Indices: 79132182--79132245 Score: 74
Period size: 13 Copynumber: 4.9 Consensus size: 13
79132172 TAAACTAAAT
*
79132182 TTTTCAAAAGTAC
1 TTTTCAAAAGCAC
* *
79132195 TTCTCAAAAGTAC
1 TTTTCAAAAGCAC
* *
79132208 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
*
79132221 TTTTCAAAAGCAG
1 TTTTCAAAAGCAC
79132234 TTTTCAAAAGCA
1 TTTTCAAAAGCA
79132246 TTGCCAAACT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.36, C:0.22, G:0.09, T:0.33
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:79137921 original size:30 final size:29
Alignment explanation
Indices: 79137887--79137988 Score: 109
Period size: 30 Copynumber: 3.5 Consensus size: 29
79137877 ATAGTGAATC
*
79137887 CGCACACTTAGTGCTATATATTTTTCAGCT
1 CGCACACTTAGTGCTATATA-TTTTCAACT
*
79137917 CGCACACTTAGTGCTATATA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AACT
* * * *
79137945 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-TATTTTCAACT
79137975 CGCACACTTAGTGC
1 CGCACACTTAGTGC
79137989 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
27 2 0.03
28 20 0.33
29 1 0.02
30 37 0.61
31 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAACT
Found at i:79146519 original size:21 final size:24
Alignment explanation
Indices: 79146488--79146545 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 24
79146478 CCTAATAATA
*
79146488 ACTCTTCTGAGTTACCTG-ATAAG
1 ACTCTTATGAGTTACCTGAATAAG
* *
79146511 -CTC-TATGAGCTCCCTGAATAAG
1 ACTCTTATGAGTTACCTGAATAAG
79146533 ACTCTTATGAGTT
1 ACTCTTATGAGTT
79146546 TCCTATTTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
21 10 0.36
22 8 0.29
23 3 0.11
24 7 0.25
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.34
Consensus pattern (24 bp):
ACTCTTATGAGTTACCTGAATAAG
Found at i:79146901 original size:130 final size:130
Alignment explanation
Indices: 79146665--79146924 Score: 421
Period size: 130 Copynumber: 2.0 Consensus size: 130
79146655 TGTGTTGACG
* * * *
79146665 GTTTATAGTTTTATACACCTTGAGTGTACTACCTGAGTATCCATCGATATTTTAATAATTCAACG
1 GTTTACAGTTTTATACACCTTAAGTGTACTACCTGAGTATCCATCAATATTTCAATAATTCAACG
* *
79146730 GATAAAACTCCTGACATTAGAAATTATGAGATTAAATGAATTATGTCTCAAATGCTTCTAAAAGT
66 GATAAAACTCCTGACATGAGAAATTATGAGATTAAAAGAATTATGTCTCAAATGCTTCTAAAAGT
* *
79146795 GTTTACAGTTTTGTACACCTTAAGTGTACTACCTGAGTATCCATCAATATTTCAATAATTCAATG
1 GTTTACAGTTTTATACACCTTAAGTGTACTACCTGAGTATCCATCAATATTTCAATAATTCAACG
* * *
79146860 GATAAAACTCTTGACATGAGAAATTATGAGATTAAAAGAATTATGTCTCGAATGCTTCTGAAAGT
66 GATAAAACTCCTGACATGAGAAATTATGAGATTAAAAGAATTATGTCTCAAATGCTTCTAAAAGT
79146925 TGATAGCATG
Statistics
Matches: 119, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
130 119 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (130 bp):
GTTTACAGTTTTATACACCTTAAGTGTACTACCTGAGTATCCATCAATATTTCAATAATTCAACG
GATAAAACTCCTGACATGAGAAATTATGAGATTAAAAGAATTATGTCTCAAATGCTTCTAAAAGT
Found at i:79148946 original size:46 final size:45
Alignment explanation
Indices: 79148896--79149068 Score: 132
Period size: 46 Copynumber: 3.8 Consensus size: 45
79148886 TTGAGCATCC
79148896 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA-GTCT
* * * *** * * * * *
79148942 GAACTCATTGAGTTGAGTTCGAGTTGGAGAGATGTA-ACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTT-CACTTATGGATGCAAAG--TCT
* * * **
79148989 GAGCTCGTTGAGTTGAGTTCGAGTTCACTCATGGATGCAAACACT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGTCT
* *
79149034 CGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 -GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79149069 GCGGGTTACA
Statistics
Matches: 95, Mismatches: 27, Indels: 10
0.72 0.20 0.08
Matches are distributed among these distances:
45 2 0.02
46 61 0.64
47 32 0.34
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGTCT
Found at i:79149049 original size:93 final size:93
Alignment explanation
Indices: 79148890--79149059 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
79148880 GGATGGTTGA
* **
79148890 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAAACTCTGAACTCATTGAGT
*
79148955 TGAGTTCGAGTTGGAGAGATGTAACTAG
66 TGAGTCCGAGTTGGAGAGATGTAACTAG
* * * *
79148983 GCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTCATGGATGCAAACACTC-GAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAA-ACTCTGAACTCATTGAG
79149047 TTGAGTCCGAGTT
65 TTGAGTCCGAGTT
79149060 CGCTTATGGG
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
93 66 0.97
94 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAAACTCTGAACTCATTGAGT
TGAGTCCGAGTTGGAGAGATGTAACTAG
Found at i:79151307 original size:27 final size:28
Alignment explanation
Indices: 79151242--79151311 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
79151232 AAATTTGTAC
79151242 AGCACTAAGTGTGCGAGTTGGATCATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
79151270 AGCACTAAGTGTGCGAGTT-GATTATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
79151297 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
79151312 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTGGATCATAT
Found at i:79151322 original size:27 final size:27
Alignment explanation
Indices: 79151242--79151323 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
79151232 AAATTTGTAC
* *
79151242 AGCACTAAGTGTGCGAGTTGGA-TCATAT
1 AGCACTAAGTGTGCGAGCT-CACT-ATAT
* * *
79151270 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
79151297 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
79151324 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 27 0.56
28 20 0.42
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:79159215 original size:27 final size:28
Alignment explanation
Indices: 79159150--79159219 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
79159140 AAATTTGTAC
79159150 AGCACTAAGTGTGCGAGTTGGATCATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
79159178 AGCACTAAGTGTGCGAGTT-GATTATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
79159205 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
79159220 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTGGATCATAT
Found at i:79159230 original size:27 final size:27
Alignment explanation
Indices: 79159150--79159231 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
79159140 AAATTTGTAC
* *
79159150 AGCACTAAGTGTGCGAGTTGGA-TCATAT
1 AGCACTAAGTGTGCGAGCT-CACT-ATAT
* * *
79159178 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
79159205 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
79159232 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 27 0.56
28 20 0.42
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:79164880 original size:12 final size:12
Alignment explanation
Indices: 79164863--79164889 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
79164853 TTGATTCCAT
79164863 GTCCCAGACATG
1 GTCCCAGACATG
79164875 GTCCCAGACATG
1 GTCCCAGACATG
79164887 GTC
1 GTC
79164890 TTACACTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.33, G:0.26, T:0.19
Consensus pattern (12 bp):
GTCCCAGACATG
Found at i:79164983 original size:48 final size:49
Alignment explanation
Indices: 79164875--79165086 Score: 156
Period size: 47 Copynumber: 4.4 Consensus size: 49
79164865 CCCAGACATG
79164875 GTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGGCCGATGCCAT
1 GTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGGCCGATGCCAT
* * * * *
79164924 GTCCCAAACATGGTCTTACACTGAC-ACCTCTATA-CG-TGCCGATGCTAT
1 GTCCCAGACATGGTCTTACACTGACTA--TCGAAATCGAGGCCGATGCCAT
* * ** * * *
79164972 GTCCCAGACAT-GTCTTACACT-AGT-TCTCATCTCAATGCCAATGCCAT
1 GTCCCAGACATGGTCTTACACTGACTATC-GAAATCGAGGCCGATGCCAT
* * * * * *
79165019 GTCCCAGAAATGTTCTTACAATGACTCTC-ATAAT-GTGGTCGATG-CAT
1 GTCCCAGACATGGTCTTACACTGACTATCGA-AATCGAGGCCGATGCCAT
79165066 GTCCCAGACAT-GTCTTACACT
1 GTCCCAGACATGGTCTTACACT
79165087 AGCACACAAA
Statistics
Matches: 127, Mismatches: 26, Indels: 23
0.72 0.15 0.13
Matches are distributed among these distances:
44 2 0.02
45 2 0.02
46 10 0.08
47 43 0.34
48 35 0.28
49 29 0.23
50 6 0.05
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (49 bp):
GTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGGCCGATGCCAT
Found at i:79165587 original size:19 final size:19
Alignment explanation
Indices: 79165551--79165589 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
79165541 CCCATAATTC
79165551 TCATTATTTCACACATTTA
1 TCATTATTTCACACATTTA
*
79165570 TCATGTATTTTACA-ATTTA
1 TCAT-TATTTCACACATTTA
79165589 T
1 T
79165590 GAAAAATGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.31, C:0.15, G:0.03, T:0.51
Consensus pattern (19 bp):
TCATTATTTCACACATTTA
Found at i:79167954 original size:28 final size:27
Alignment explanation
Indices: 79167891--79167960 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
79167881 ATAGTGAGTC
*
79167891 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
79167918 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
79167946 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
79167961 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:79175890 original size:28 final size:27
Alignment explanation
Indices: 79175827--79175896 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
79175817 ATAGTGAGTC
*
79175827 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
79175854 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
79175882 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
79175897 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:79183786 original size:38 final size:38
Alignment explanation
Indices: 79183744--79183820 Score: 109
Period size: 38 Copynumber: 2.0 Consensus size: 38
79183734 ATCCAAAGCT
79183744 TTGCCCAAATACAATGCACAAGAAATAACCTAAATCTA
1 TTGCCCAAATACAATGCACAAGAAATAACCTAAATCTA
* * * * *
79183782 TTGCCCAAATATAGTGTATAAGAAATAACTTAAATCTA
1 TTGCCCAAATACAATGCACAAGAAATAACCTAAATCTA
79183820 T
1 T
79183821 GTATAGATGC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.27
Consensus pattern (38 bp):
TTGCCCAAATACAATGCACAAGAAATAACCTAAATCTA
Found at i:79185430 original size:30 final size:30
Alignment explanation
Indices: 79185394--79185454 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
79185384 ATAACATATA
79185394 ATATGCGATAAAATCGCCAATCCCCTCGGT
1 ATATGCGATAAAATCGCCAATCCCCTCGGT
79185424 ATATGCGATAAAATCGCCAATCCCCTCGGT
1 ATATGCGATAAAATCGCCAATCCCCTCGGT
79185454 A
1 A
79185455 CTCTAGGTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (30 bp):
ATATGCGATAAAATCGCCAATCCCCTCGGT
Found at i:79186276 original size:43 final size:43
Alignment explanation
Indices: 79186228--79186313 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
79186218 ACTCAGTGTG
*
79186228 TAACCCAACAAAATTAGACATGCAAAACATACAGAAATCTCAT
1 TAACCCAACAAAATTAGACAAGCAAAACATACAGAAATCTCAT
* * *
79186271 TAACCCTATAGAATTAGACAAGCAAAACATACAGAAATCTCAT
1 TAACCCAACAAAATTAGACAAGCAAAACATACAGAAATCTCAT
79186314 ATATATATTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.50, C:0.22, G:0.08, T:0.20
Consensus pattern (43 bp):
TAACCCAACAAAATTAGACAAGCAAAACATACAGAAATCTCAT
Found at i:79189217 original size:26 final size:26
Alignment explanation
Indices: 79189180--79189274 Score: 102
Period size: 26 Copynumber: 3.6 Consensus size: 26
79189170 TGTAGGGTAG
79189180 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACT-AAATACCCTTGGTTTACAA
79189207 AATTACTAAATACCCTTGGTTTACAA
1 AATTACTAAATACCCTTGGTTTACAA
* * * **
79189233 ATTTGCCAAATACCTCTT-GTTTGTAA
1 AATTACTAAATACC-CTTGGTTTACAA
*
79189259 AATTATCAAAATACCC
1 AATTA-CTAAATACCC
79189275 CTGATTTGTG
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
26 40 0.69
27 18 0.31
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (26 bp):
AATTACTAAATACCCTTGGTTTACAA
Found at i:79189473 original size:27 final size:27
Alignment explanation
Indices: 79189188--79189465 Score: 200
Period size: 27 Copynumber: 10.3 Consensus size: 27
79189178 AGAATTACTG
* ** *
79189188 AAATACCCTTGGTTTACAAAATTA-CT
1 AAATACCCTTGATTTGTAAAATTATCA
* *
79189214 AAATACCCTTG-GTT-TACAAATT-TGCC
1 AAATACCCTTGATTTGTA-AAATTAT-CA
79189240 AAATACCTCTTG-TTTGTAAAATTATCA
1 AAATACC-CTTGATTTGTAAAATTATCA
* *
79189267 AAATACCCCTGATTTGTGAAATT-TCCA
1 AAATACCCTTGATTTGTAAAATTAT-CA
*
79189294 AAATACCCTTGATTTGTAAAATTACCA
1 AAATACCCTTGATTTGTAAAATTATCA
* * * *
79189321 AAATACCCCTAATTTGGAAAATTATCG
1 AAATACCCTTGATTTGTAAAATTATCA
*
79189348 AAATACCCTTAATTTGTAAAATTA-CAAA
1 AAATACCCTTGATTTGTAAAATTATC--A
* **
79189376 AAATACCC-TAATTTACAAAATTA-CAA
1 AAATACCCTTGATTTGTAAAATTATC-A
**
79189402 AAATACCCTTGACTTTCAAAAATTA-CA
1 AAATACCCTTGA-TTTGTAAAATTATCA
* *
79189429 GAAATACCATTTG-TTTGTAAAATTATCG
1 -AAATACC-CTTGATTTGTAAAATTATCA
79189457 AAATACCCT
1 AAATACCCT
79189466 GGGTTTGTGG
Statistics
Matches: 208, Mismatches: 28, Indels: 32
0.78 0.10 0.12
Matches are distributed among these distances:
24 1 0.00
25 7 0.03
26 35 0.17
27 132 0.63
28 30 0.14
29 3 0.01
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.33
Consensus pattern (27 bp):
AAATACCCTTGATTTGTAAAATTATCA
Found at i:79189774 original size:41 final size:41
Alignment explanation
Indices: 79189713--79189832 Score: 132
Period size: 41 Copynumber: 2.9 Consensus size: 41
79189703 GGAAGAAATT
* *
79189713 GAGGATCGCCTGGTTGCTTGACGACCGTGGATCCACCGATG
1 GAGGATCGCATGGTTACTTGACGACCGTGGATCCACCGATG
* * *
79189754 GAGGATTGCATGGTTACTTGACGACTGTGGATCCACCGATT
1 GAGGATCGCATGGTTACTTGACGACCGTGGATCCACCGATG
* * * * ** *
79189795 AAGAATCGGATGGTTGCTTGAAAACAGTGGATCCACCG
1 GAGGATCGCATGGTTACTTGACGACCGTGGATCCACCG
79189833 GTGGCTTTTA
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 66 1.00
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (41 bp):
GAGGATCGCATGGTTACTTGACGACCGTGGATCCACCGATG
Found at i:79190026 original size:22 final size:22
Alignment explanation
Indices: 79189974--79190038 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
79189964 GCCAATTATT
*
79189974 CTGATTATGGCTTTGTGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
79189996 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
79190018 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
79190039 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:79190249 original size:25 final size:25
Alignment explanation
Indices: 79190182--79190264 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
79190172 GTGCTAGTAA
* * *
79190182 GTTATTGATGGCTTTATGCCGATAT
1 GTTATCGATGGCTTTGTGCCGATCT
* * *
79190207 GATATTGATGGCTATGTGCCGATCT
1 GTTATCGATGGCTTTGTGCCGATCT
*
79190232 GTTATCGATGGCTTTGTGCTGATCGT
1 GTTATCGATGGCTTTGTGCCGATC-T
*
79190258 ATTATCG
1 GTTATCG
79190265 TAATAATGGC
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
25 41 0.85
26 7 0.15
ACGTcount: A:0.18, C:0.14, G:0.27, T:0.41
Consensus pattern (25 bp):
GTTATCGATGGCTTTGTGCCGATCT
Found at i:79191794 original size:31 final size:31
Alignment explanation
Indices: 79191751--79191814 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
79191741 CCTTTTCATA
79191751 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
79191782 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
79191813 TT
1 TT
79191815 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:79192083 original size:23 final size:24
Alignment explanation
Indices: 79192021--79192150 Score: 210
Period size: 24 Copynumber: 5.4 Consensus size: 24
79192011 CTGGAGGCCG
79192021 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
79192045 AGCCCTTTTTTAATAACTGGGGCATA
1 AGCCC--TTTTAATAACTGGGGCATA
79192071 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
79192094 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
79192118 AGCCCTTTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
79192142 AGCCCTTTT
1 AGCCCTTTT
79192151 GCACTTCCTC
Statistics
Matches: 101, Mismatches: 1, Indels: 8
0.92 0.01 0.07
Matches are distributed among these distances:
23 24 0.24
24 54 0.53
25 17 0.17
26 6 0.06
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:79192214 original size:11 final size:11
Alignment explanation
Indices: 79192199--79192254 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
79192189 TCATAAATAC
79192199 ATCATGTGCAT
1 ATCATGTGCAT
*
79192210 GTCAT-T-CAT
1 ATCATGTGCAT
79192219 ATCATGTGCAT
1 ATCATGTGCAT
*
79192230 ATCA--TACAT
1 ATCATGTGCAT
*
79192239 GTCATGTGCAT
1 ATCATGTGCAT
79192250 ATCAT
1 ATCAT
79192255 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 14 0.40
10 2 0.06
11 19 0.54
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:79192224 original size:20 final size:20
Alignment explanation
Indices: 79192199--79192265 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
79192189 TCATAAATAC
* *
79192199 ATCATGTGCATGTCATTCAT
1 ATCATGTGCATATCATACAT
79192219 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
79192239 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
79192259 ACCATGT
1 ATCATGT
79192266 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:79192329 original size:25 final size:25
Alignment explanation
Indices: 79192301--79192348 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79192291 ATGTATAAAC
* * *
79192301 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
79192326 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
79192349 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:79193492 original size:18 final size:17
Alignment explanation
Indices: 79193465--79193498 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
79193455 TAGGGAAGAA
79193465 AATAAGAAGAGAAAACT
1 AATAAGAAGAGAAAACT
79193482 AATACAGAAGAGAAAAC
1 AATA-AGAAGAGAAAAC
79193499 GGCACAGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.65, C:0.09, G:0.18, T:0.09
Consensus pattern (17 bp):
AATAAGAAGAGAAAACT
Found at i:79197293 original size:40 final size:40
Alignment explanation
Indices: 79197227--79197393 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
79197217 AAATTGAATG
* * *
79197227 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
79197266 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
79197306 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
79197346 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
79197386 ATATCCGG
1 ATATCCGG
79197394 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:79201957 original size:28 final size:28
Alignment explanation
Indices: 79201888--79201988 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
79201878 GACAAGATTG
* * * *
79201888 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
79201918 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
79201946 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
79201975 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79201989 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:79201982 original size:29 final size:28
Alignment explanation
Indices: 79201917--79201988 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
79201907 AAAATTGTAC
*
79201917 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
79201945 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
79201974 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79201989 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:79207829 original size:40 final size:40
Alignment explanation
Indices: 79207784--79207950 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
79207774 CGGAATATAA
79207784 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
79207824 CCGGATAGAAT-GCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
79207863 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
79207903 CCGGATATAATTTCCAGCATAATTGTCTTCGGGTGTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
79207943 CCGGATAT
1 CCGGATAT
79207951 CATTCAATTT
Statistics
Matches: 105, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
38 1 0.01
39 32 0.30
40 72 0.69
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:79207848 original size:39 final size:39
Alignment explanation
Indices: 79207800--79207909 Score: 132
Period size: 39 Copynumber: 2.8 Consensus size: 39
79207790 ATAATCACGT
** *
79207800 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGA-ATGCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAGACACTA
* *
79207839 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAGACACTA
*
79207879 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
79207910 TAATTTCCAG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
39 33 0.53
40 29 0.47
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAGACACTA
Found at i:79213968 original size:28 final size:29
Alignment explanation
Indices: 79213856--79213967 Score: 154
Period size: 30 Copynumber: 3.9 Consensus size: 29
79213846 GTGACGAGAT
*
79213856 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
79213885 TGGCACTAAAGTGTGCGTGCTGGAAATATA
1 TGGCACT-AAGTGTGCATGCTGGAAATATA
*
79213915 AGGCACTAAGTGTGCATGCTGGAAA-ATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* * *
79213943 TGACACTATGTGTGCAAGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
79213968 AATACGCACT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
28 24 0.32
29 24 0.32
30 28 0.37
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:79213971 original size:59 final size:59
Alignment explanation
Indices: 79213857--79213967 Score: 163
Period size: 59 Copynumber: 1.9 Consensus size: 59
79213847 TGACGAGATT
* * **
79213857 GGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAATATATGACACTAAAGTGTGCAAGCTGGAAATATAA
*
79213916 GGCACTAAGTGTGCATGCTGGAAA-ATATGACACT-ATGTGTGCAAGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAATATATGACACTAAAGTGTGCAAGCTGGAAA
79213968 AATACGCACT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
57 15 0.32
58 9 0.19
59 23 0.49
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.24
Consensus pattern (59 bp):
GGCACTAAGTGTGCATGCTGGAAATATATGACACTAAAGTGTGCAAGCTGGAAATATAA
Found at i:79213983 original size:28 final size:28
Alignment explanation
Indices: 79213903--79213990 Score: 79
Period size: 28 Copynumber: 3.1 Consensus size: 28
79213893 AAGTGTGCGT
* * * *
79213903 GCTGGAAATATAAGGCACTAAGTGTGCAT
1 GCTGGAAA-ATACGACACTAGGTGTGCAA
* *
79213932 GCTGGAAAATATGACACTATGTGTGCAA
1 GCTGGAAAATACGACACTAGGTGTGCAA
* *
79213960 GCTGGAAAAATACG-CACTGGGTGTGCGA
1 GCTGG-AAAATACGACACTAGGTGTGCAA
79213988 GCT
1 GCT
79213991 CGAAGGGTAT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
28 35 0.70
29 15 0.30
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.23
Consensus pattern (28 bp):
GCTGGAAAATACGACACTAGGTGTGCAA
Found at i:79220776 original size:40 final size:39
Alignment explanation
Indices: 79220612--79220794 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
79220602 AAATTGAATG
* *
79220612 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
79220651 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
79220691 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
79220731 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
79220770 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
79220795 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 25, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 15 0.13
40 92 0.81
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:79220819 original size:80 final size:81
Alignment explanation
Indices: 79220651--79220839 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
79220641 GCTGGAAATT
* * * *
79220651 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
79220716 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
79220732 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
79220795 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
79220811 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
79220840 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:79227357 original size:79 final size:81
Alignment explanation
Indices: 79227221--79227403 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
79227211 TCGAATGATG
* *
79227221 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
79227285 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
79227300 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
79227362 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
79227380 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
79227404 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:79227419 original size:40 final size:40
Alignment explanation
Indices: 79227222--79227405 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
79227212 CGAATGATGT
* * * *
79227222 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
79227262 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
79227302 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
79227340 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
79227381 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
79227406 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:79227427 original size:79 final size:79
Alignment explanation
Indices: 79227274--79227438 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
79227264 GGACTAAGAT
* **
79227274 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
79227339 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
79227353 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
79227416 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
79227432 CCGAAGG
1 CCGAAGG
79227439 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:79236027 original size:24 final size:24
Alignment explanation
Indices: 79236000--79236047 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
79235990 GTTATATTAT
79236000 GTGATATATGATTAAGTGACTAAC
1 GTGATATATGATTAAGTGACTAAC
79236024 GTGATATATGATTAAGTGACTAAC
1 GTGATATATGATTAAGTGACTAAC
79236048 TCATCGATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (24 bp):
GTGATATATGATTAAGTGACTAAC
Found at i:79241810 original size:39 final size:39
Alignment explanation
Indices: 79241696--79241866 Score: 220
Period size: 39 Copynumber: 4.3 Consensus size: 39
79241686 ACGACTAGCT
* *
79241696 CAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAA-CCCGGATT-TATTAACTCGCA
* * *
79241736 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCA
*
79241776 CAAATGCCTTTGGGCTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
*
79241815 CAAATGCCTTCGGGCTTAACTCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
*
79241854 CGAATGCCTTCGG
1 CAAATGCCTTCGG
79241867 ATCTTAGTCC
Statistics
Matches: 120, Mismatches: 9, Indels: 5
0.90 0.07 0.04
Matches are distributed among these distances:
39 72 0.60
40 44 0.37
41 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
Found at i:79251454 original size:27 final size:26
Alignment explanation
Indices: 79251410--79251561 Score: 97
Period size: 27 Copynumber: 5.7 Consensus size: 26
79251400 TTAGTTTACC
*
79251410 AAATTACTAAAATACCCCCAGTTGTA
1 AAATTACCAAAATACCCCCAGTTGTA
* * *
79251436 AAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACCAAAATACCCCCAG-TTGTA
* *** *
79251463 AAATTACCCAAATATCCTTGATTTGTA
1 AAATTACCAAAATA-CCCCCAGTTGTA
*** * *
79251490 AAATTACCAAAATAACCTTAATTTGAA
1 AAATTACCAAAAT-ACCCCCAGTTGTA
* * *
79251517 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCC-CCAGTTGTA
* *
79251544 AAATTATCAAAGTACCCC
1 AAATTACCAAAATACCCC
79251562 TGATTTACAA
Statistics
Matches: 98, Mismatches: 24, Indels: 8
0.75 0.18 0.06
Matches are distributed among these distances:
26 22 0.22
27 73 0.74
28 3 0.03
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (26 bp):
AAATTACCAAAATACCCCCAGTTGTA
Found at i:79251574 original size:54 final size:54
Alignment explanation
Indices: 79251404--79251576 Score: 179
Period size: 54 Copynumber: 3.2 Consensus size: 54
79251394 AATACTTTAG
* * * * *
79251404 TTTACCAAATTACTAAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCCGG
1 TTTACAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTGA
* ** * * * * * * *
79251457 TTTATAAAATTACCCAAATATCCTTGATTTGTAAAATTACCAAAATAACCTTAA
1 TTTACAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTGA
*
79251511 TTTGA-AAAATTACTAAAATACCCTCGACTTGTAAAATTATCAAAGTACCCCTGA
1 TTT-ACAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTGA
79251565 TTTACAAAATTA
1 TTTACAAAATTA
79251577 ATATTTTACC
Statistics
Matches: 93, Mismatches: 24, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
53 19 0.20
54 73 0.78
55 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.31
Consensus pattern (54 bp):
TTTACAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTGA
Found at i:79251586 original size:27 final size:27
Alignment explanation
Indices: 79251559--79251776 Score: 276
Period size: 27 Copynumber: 8.1 Consensus size: 27
79251549 ATCAAAGTAC
* *
79251559 CCCT-GATTTACAAAATTAATATTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
*
79251585 CCCTCAATTTACAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
* *
79251612 CCCTCGATTGACAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
* *
79251639 CCCTCGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
**
79251666 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
*
79251693 CCCTCGATTGACAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
* * **
79251720 CCCTCAATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
* * *
79251747 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
79251774 CCC
1 CCC
79251777 CTAGGGTGTT
Statistics
Matches: 170, Mismatches: 21, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
26 4 0.02
27 166 0.98
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACTATTTTA
Found at i:79251603 original size:81 final size:81
Alignment explanation
Indices: 79251518--79251714 Score: 195
Period size: 81 Copynumber: 2.4 Consensus size: 81
79251508 TAATTTGAAA
79251518 AATTACTAAAATACCCTCGACTTGTA-A-AATTA-TCAAAGTACCC-CTGATTTACAAAATTAAT
1 AATTACTAAAATACCCTCGA-TTG-ACAGAATTACT-AAAGTACCCTC-GATTTACAAAATTAAT
79251579 ATTTTACCCTCAATTTACAG
62 ATTTTACCCTCAATTTACAG
*** **** * *
79251599 AATTACTATTTTACCCTCGATTGACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTGTTT
1 AATTACTAAAATACCCTCGATTGACAGAATTACTAAAGTACCCTCGATTTACAAAATTAATATTT
*
79251664 TACCCTCGATTTACAG
66 TACCCTCAATTTACAG
*****
79251680 AATTACCGTTTTACCCTCGATTGACAGAATTACTA
1 AATTACTAAAATACCCTCGATTGACAGAATTACTA
79251715 TTTTACCCTC
Statistics
Matches: 99, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
79 1 0.01
80 4 0.04
81 92 0.93
82 2 0.02
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.36
Consensus pattern (81 bp):
AATTACTAAAATACCCTCGATTGACAGAATTACTAAAGTACCCTCGATTTACAAAATTAATATTT
TACCCTCAATTTACAG
Found at i:79251719 original size:81 final size:81
Alignment explanation
Indices: 79251559--79251776 Score: 321
Period size: 81 Copynumber: 2.7 Consensus size: 81
79251549 ATCAAAGTAC
* * * *
79251559 CCCT-GATTTACAAAATTAATATTTTACCCTCAATTTACAGAATTACTATTTTACCCTCGATTGA
1 CCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTGA
*
79251623 CAGAATTACTGTTTTA
66 CAGAATTACTATTTTA
*
79251639 CCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTGA
1 CCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTGA
79251704 CAGAATTACTATTTTA
66 CAGAATTACTATTTTA
* * * * * *
79251720 CCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 CCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCC
79251777 CTAGGGTGTT
Statistics
Matches: 124, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
80 4 0.03
81 120 0.97
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (81 bp):
CCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTGA
CAGAATTACTATTTTA
Found at i:79252124 original size:27 final size:26
Alignment explanation
Indices: 79252084--79252143 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
79252074 CCACATATAT
* *
79252084 ATATCTATTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
79252110 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
79252137 ATATCTG
1 ATATCTG
79252144 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:79252301 original size:6 final size:6
Alignment explanation
Indices: 79252290--79252380 Score: 71
Period size: 6 Copynumber: 14.8 Consensus size: 6
79252280 TTACTTCATA
* * *
79252290 CTGATT CTGATT CTAATT CTG-TCAC CTGATT CTGATT CTGATT CTG-TCAC
1 CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGAT--T
* *
79252340 CTGATT CTGATT CTGATT CTCATT TTGATT CT-AGTT CTGAT
1 CTGATT CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
79252381 AATGTTTCTT
Statistics
Matches: 67, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
5 3 0.04
6 55 0.82
7 7 0.10
8 2 0.03
ACGTcount: A:0.18, C:0.21, G:0.14, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:79252318 original size:25 final size:25
Alignment explanation
Indices: 79252290--79252359 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
79252280 TTACTTCATA
*
79252290 CTGATTCTGATTCTAATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
79252315 CTGATTCTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
79252340 CTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
79252360 CATTTTGATT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.17, C:0.23, G:0.14, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTCAC
Found at i:79253160 original size:56 final size:56
Alignment explanation
Indices: 79253074--79253208 Score: 209
Period size: 56 Copynumber: 2.4 Consensus size: 56
79253064 CCATGACATT
*
79253074 GATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCAATATGTGATTCC
1 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCC
* *
79253130 GATATATGTGTGCGAGTAAGACTACGTTTAATACGTTGGCATCGATATGTGATTCC
1 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCC
* *
79253186 -ATTATATGTGTGAGAATAAGACC
1 GA-TATATGTGTGCGAGTAAGACC
79253209 CTGTCTAGGA
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
55 1 0.01
56 71 0.99
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCC
Found at i:79253226 original size:56 final size:56
Alignment explanation
Indices: 79253074--79253239 Score: 167
Period size: 56 Copynumber: 3.0 Consensus size: 56
79253064 CCATGACATT
* * * * * * *
79253074 GATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCAATATGTGATTCC
1 GATATATGTGTGAGAATAAGACTACGTCTAAGACGTTGGCATCGATATGTGATTCC
* * * *
79253130 GATATATGTGTGCGAGTAAGACTACGTTTAATACGTTGGCATCGATATGTGATTCC
1 GATATATGTGTGAGAATAAGACTACGTCTAAGACGTTGGCATCGATATGTGATTCC
* *
79253186 -ATTATATGTGTGAGAATAAGAC-CCTGTCTAGGACAG-TGGCATCGATATGTGATT
1 GA-TATATGTGTGAGAATAAGACTAC-GTCTAAGAC-GTTGGCATCGATATGTGATT
79253240 ACATGTAAGA
Statistics
Matches: 98, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
55 2 0.02
56 95 0.97
57 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (56 bp):
GATATATGTGTGAGAATAAGACTACGTCTAAGACGTTGGCATCGATATGTGATTCC
Found at i:79255503 original size:129 final size:129
Alignment explanation
Indices: 79255273--79255534 Score: 497
Period size: 129 Copynumber: 2.0 Consensus size: 129
79255263 AACCCCATTC
79255273 CGACAATGAACACGGGTTAGGGGTGTTACACAGTCCAACTCTGGAGGCAGCTCCAACTAATAAGC
1 CGACAATGAACACGGGTTAGGGGTGTTACACAGTCCAACTCTGGAGGCAGCTCCAACTAATAAGC
*
79255338 AACCCACCCCACACACTTCAGAATTCGATACGGTCCAATGAACCTAGGGCTCAACTTGCCTTTA
66 AACCCACCCCACACACTTCAGAATTCGATACGGTCCAATGAACCTAGGGCTCAACTTGCCCTTA
*
79255402 CGACAATGAACACGGGTTAGGGGTTTTACACAGTCCAACTCTGGAGGCAGCTCCAACTAATAAGC
1 CGACAATGAACACGGGTTAGGGGTGTTACACAGTCCAACTCTGGAGGCAGCTCCAACTAATAAGC
*
79255467 AACCCACCCCGCACACTTCAGAATTCGATACGGTCCAATGAACCTAGGGCTCAACTTGCCCTTA
66 AACCCACCCCACACACTTCAGAATTCGATACGGTCCAATGAACCTAGGGCTCAACTTGCCCTTA
79255531 CGAC
1 CGAC
79255535 CAAATCTAAG
Statistics
Matches: 130, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
129 130 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (129 bp):
CGACAATGAACACGGGTTAGGGGTGTTACACAGTCCAACTCTGGAGGCAGCTCCAACTAATAAGC
AACCCACCCCACACACTTCAGAATTCGATACGGTCCAATGAACCTAGGGCTCAACTTGCCCTTA
Found at i:79256130 original size:106 final size:106
Alignment explanation
Indices: 79255945--79256161 Score: 380
Period size: 106 Copynumber: 2.0 Consensus size: 106
79255935 AGGATGGAAC
*
79255945 GCAGTACTGAAGTCCAATCTCAAACCCAAAGCTTCATGCAGTTTCTTCCAAAACTGAGAAGTGAA
1 GCAGTACTGAAGTCCAATCTCAAACCCAAAGCCTCATGCAGTTTCTTCCAAAACTGAGAAGTGAA
* *
79256010 GCGAGGATCTCTATCAGAAATTATCGAAACAGGTACCCCAT
66 GCAAGGACCTCTATCAGAAATTATCGAAACAGGTACCCCAT
* *
79256051 GCAGTACTGAAGTCCAATCTCAAACCTAAAGCCTCATGCAGTTTCTTCCAGAACTGAGAAGTGAA
1 GCAGTACTGAAGTCCAATCTCAAACCCAAAGCCTCATGCAGTTTCTTCCAAAACTGAGAAGTGAA
*
79256116 GCAAGGACCTCTATCAGAAATTATTGAAACAGGTACCCCAT
66 GCAAGGACCTCTATCAGAAATTATCGAAACAGGTACCCCAT
79256157 GCAGT
1 GCAGT
79256162 CTTACAATAT
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
106 105 1.00
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (106 bp):
GCAGTACTGAAGTCCAATCTCAAACCCAAAGCCTCATGCAGTTTCTTCCAAAACTGAGAAGTGAA
GCAAGGACCTCTATCAGAAATTATCGAAACAGGTACCCCAT
Found at i:79261633 original size:272 final size:272
Alignment explanation
Indices: 79261147--79261644 Score: 870
Period size: 272 Copynumber: 1.8 Consensus size: 272
79261137 GGCTTATTCG
*
79261147 ATCATGAGAAGAACCACCTAACAGTCTATGATTGAACCAAGAGAGGACCGACATAACCAAAGGTT
1 ATCATGAGAAGAACCACCTAAAAGTCTATGATTGAACCAAGAGAGGACCGACATAACCAAAGGTT
* * * ***
79261212 GGAATCCTCCTAATTGAAAAAATCTTTTTCTCAACTCTGTTTCTTTTCACAATTGTGATTTCAAT
66 GGAATCCTCCAAATCGAAAAAATCTTTTTCTCAACTCTGTTTCTTTTCAAAATTACAATTTCAAT
79261277 TTATTTAATCTCAACTCGTCCATATTCTTAATTCTATATATTTATTTATTTTTCCAGGTCTAACG
131 TTATTTAATCTCAACTCGTCCATATTCTTAATTCTATATATTTATTTATTTTTCCAGGTCTAACG
*
79261342 TTTTTCTTGGGCACGACTACGCCCAAGATTTATGGACACAACAAGATGTTTTTCTTGTGAAATAT
196 TTTTTCTTGGGCACGACTACGCACAAGATTTATGGACACAACAAGATGTTTTTCTTGTGAAATAT
79261407 AGAAGAAGTGGT
261 AGAAGAAGTGGT
* **
79261419 ATCATGAGAAGAACCACCTAAAAGTCTATGATTGTACCAAGAGAGGACCGACATAACTGAAGGTT
1 ATCATGAGAAGAACCACCTAAAAGTCTATGATTGAACCAAGAGAGGACCGACATAACCAAAGGTT
*
79261484 GGAATCCTCCAAATCGAAAAACTCTTTTTCTCAACTCTGTTTCTTTTCAAAATTACAATTTCAAT
66 GGAATCCTCCAAATCGAAAAAATCTTTTTCTCAACTCTGTTTCTTTTCAAAATTACAATTTCAAT
* *
79261549 TTATTTAATCTCAACTCGTCCATATTCTTAATTCTATATTTTTATTTATTTTTCCAGGTCTGACG
131 TTATTTAATCTCAACTCGTCCATATTCTTAATTCTATATATTTATTTATTTTTCCAGGTCTAACG
79261614 TTTTTCTTGGGCACGACTACGCACAAGATTT
196 TTTTTCTTGGGCACGACTACGCACAAGATTT
79261645 TGAGGAATAA
Statistics
Matches: 212, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
272 212 1.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (272 bp):
ATCATGAGAAGAACCACCTAAAAGTCTATGATTGAACCAAGAGAGGACCGACATAACCAAAGGTT
GGAATCCTCCAAATCGAAAAAATCTTTTTCTCAACTCTGTTTCTTTTCAAAATTACAATTTCAAT
TTATTTAATCTCAACTCGTCCATATTCTTAATTCTATATATTTATTTATTTTTCCAGGTCTAACG
TTTTTCTTGGGCACGACTACGCACAAGATTTATGGACACAACAAGATGTTTTTCTTGTGAAATAT
AGAAGAAGTGGT
Found at i:79261917 original size:27 final size:23
Alignment explanation
Indices: 79261881--79261946 Score: 69
Period size: 27 Copynumber: 2.7 Consensus size: 23
79261871 AAGCAAAAGA
* *
79261881 AAAATTTAAAACTAAAACTAACAT
1 AAAATATAAAACTAAAAATAA-AT
*
79261905 AAACAAATATAAAAATAAAAATAAAT
1 --A-AAATATAAAACTAAAAATAAAT
79261931 AAAATATAAAACTAAA
1 AAAATATAAAACTAAA
79261947 TGAAATCACT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
23 14 0.40
24 1 0.03
26 3 0.09
27 17 0.49
ACGTcount: A:0.71, C:0.08, G:0.00, T:0.21
Consensus pattern (23 bp):
AAAATATAAAACTAAAAATAAAT
Found at i:79261947 original size:17 final size:17
Alignment explanation
Indices: 79261913--79261952 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
79261903 ATAAACAAAT
79261913 ATAAAA-ATAAAAATAA
1 ATAAAATATAAAAATAA
*
79261929 ATAAAATATAAAACTAA
1 ATAAAATATAAAAATAA
*
79261946 ATGAAAT
1 ATAAAAT
79261953 CACTTTGGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (17 bp):
ATAAAATATAAAAATAA
Found at i:79261952 original size:22 final size:21
Alignment explanation
Indices: 79261893--79261952 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 21
79261883 AATTTAAAAC
*
79261893 TAAAACTAACATAAA-CAAATA
1 TAAAACTAA-ATAAATAAAATA
*
79261914 TAAAAATAAAAATAAATAAAATA
1 TAAAACT--AAATAAATAAAATA
79261937 TAAAACTAAATGAAAT
1 TAAAACTAAAT-AAAT
79261953 CACTTTGGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
21 10 0.31
22 9 0.28
23 13 0.41
ACGTcount: A:0.70, C:0.07, G:0.02, T:0.22
Consensus pattern (21 bp):
TAAAACTAAATAAATAAAATA
Found at i:79264308 original size:19 final size:20
Alignment explanation
Indices: 79264284--79264321 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
79264274 GGTACCACCA
79264284 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
79264303 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
79264322 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:79264661 original size:93 final size:93
Alignment explanation
Indices: 79264551--79264721 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
79264541 GCCCCTAAGT
* *
79264551 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
79264616 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
79264644 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
79264709 CGAGTTCGGATGC
66 CGAGTTCGGATGC
79264722 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:79264718 original size:46 final size:46
Alignment explanation
Indices: 79264546--79264718 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
79264536 AACCCGCCCC
* * * *
79264546 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
79264592 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
79264640 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
79264685 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
79264719 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:79271888 original size:19 final size:20
Alignment explanation
Indices: 79271864--79271901 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
79271854 GGTACCACCA
79271864 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
79271883 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
79271902 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:79272708 original size:30 final size:30
Alignment explanation
Indices: 79272674--79272733 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
79272664 ATTTAATACG
79272674 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
79272704 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
79272734 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:79274467 original size:19 final size:18
Alignment explanation
Indices: 79274443--79274486 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
79274433 ATGTGTGCTT
*
79274443 TATTAATTAAAATAAAATA
1 TATTAATGAAAA-AAAATA
*
79274462 TATTAAATGATAAAAAATA
1 TATT-AATGAAAAAAAATA
79274481 TATTAA
1 TATTAA
79274487 AGATATCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 2 0.09
19 14 0.64
20 6 0.27
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (18 bp):
TATTAATGAAAAAAAATA
Found at i:79274487 original size:19 final size:18
Alignment explanation
Indices: 79274456--79274491 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
79274446 TAATTAAAAT
79274456 AAAATATATTAAATGATAA
1 AAAATATATTAAA-GATAA
79274475 AAAATATATTAAAGATA
1 AAAATATATTAAAGATA
79274492 TCATCTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.31
Consensus pattern (18 bp):
AAAATATATTAAAGATAA
Found at i:79275188 original size:14 final size:15
Alignment explanation
Indices: 79275154--79275200 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
79275144 ATATATTTTT
79275154 TTTTATTAAATTGAA
1 TTTTATTAAATTGAA
* *
79275169 TGTTATTATA-TGAA
1 TTTTATTAAATTGAA
*
79275183 TTTTATTTAAAATGAA
1 TTTTA-TTAAATTGAA
79275199 TT
1 TT
79275201 GATATATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
14 8 0.31
15 12 0.46
16 6 0.23
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (15 bp):
TTTTATTAAATTGAA
Found at i:79275209 original size:30 final size:29
Alignment explanation
Indices: 79275154--79275212 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 29
79275144 ATATATTTTT
* *
79275154 TTTTATTAAATTGAATGTTATTATATGAA
1 TTTTATTAAAATGAATGATATTATATGAA
79275183 TTTTATTTAAAATGAATTGATATATATATG
1 TTTTA-TTAAAATGAA-TGATAT-TATATG
79275213 TTATTATACA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.20
30 9 0.36
31 5 0.20
32 6 0.24
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (29 bp):
TTTTATTAAAATGAATGATATTATATGAA
Found at i:79281238 original size:22 final size:22
Alignment explanation
Indices: 79281203--79281261 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
79281193 TAAATATGTT
79281203 TGGCACA-AATCCATAGTCAAGA
1 TGGCACAGAA-CCATAGTCAAGA
** * * *
79281225 TGGCACAGAACCATTTTTAGGT
1 TGGCACAGAACCATAGTCAAGA
79281247 TGGCACAGAACCATA
1 TGGCACAGAACCATA
79281262 ATCAGATTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
22 28 0.93
23 2 0.07
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (22 bp):
TGGCACAGAACCATAGTCAAGA
Found at i:79291053 original size:39 final size:40
Alignment explanation
Indices: 79290908--79291114 Score: 195
Period size: 40 Copynumber: 5.2 Consensus size: 40
79290898 CAATTGAATG
* * ** * **
79290908 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * * **
79290948 ATACCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGT-GACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTCG-TT
* *
79290988 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
79291028 AAATCCGGGCTAATA-CCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
79291067 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
79291107 ATATCCGG
1 ATATCCGG
79291115 TTGTATTCCG
Statistics
Matches: 137, Mismatches: 25, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
39 38 0.28
40 94 0.69
41 5 0.04
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:79299097 original size:80 final size:80
Alignment explanation
Indices: 79298950--79299154 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 80
79298940 ATTGAATGAT
* * ** * * *
79298950 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATA-CCGGGTTAAGACCCGAAGGCCAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCCAT
*
79299014 TGTGCTAGT-GACCAC
66 TGTGCAAGTCGACC-C
* * *
79299029 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGG-CAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCCA-
** *
79299093 TTGTGCAAGTCGTTCT
65 TTGTGCAAGTCGACCC
* *
79299109 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
79299155 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 35 0.33
80 69 0.65
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCCAT
TGTGCAAGTCGACCC
Found at i:79299152 original size:40 final size:40
Alignment explanation
Indices: 79298948--79299154 Score: 188
Period size: 40 Copynumber: 5.2 Consensus size: 40
79298938 CAATTGAATG
* * ** **
79298948 ATATCCGGGCTAAGTCCCGAAGACATTTATGC-TAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAT-GTGGTT
* ***
79298988 ATA-CCGGGTTAAGACCCGAAGGCCATT-GTGC-TAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAT-GTGGTT
* * *
79299027 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
* * * * *
79299067 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
*
79299107 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
79299147 ATATCCGG
1 ATATCCGG
79299155 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 25, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
39 30 0.22
40 108 0.78
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
Found at i:79300872 original size:12 final size:12
Alignment explanation
Indices: 79300855--79300889 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
79300845 AATTGTGTAA
79300855 ATTGAATTAAAG
1 ATTGAATTAAAG
*
79300867 ATTGAATAAAAG
1 ATTGAATTAAAG
*
79300879 ATTAAATTAAA
1 ATTGAATTAAA
79300890 TCCTAATGAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.31
Consensus pattern (12 bp):
ATTGAATTAAAG
Found at i:79302875 original size:27 final size:27
Alignment explanation
Indices: 79302842--79302903 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
79302832 CAAAACAGCC
* * *
79302842 ATTTTACCCTACAGGGGTCTTTTAGTA
1 ATTTTACCCTACAAGGGTATTTAAGTA
* * *
79302869 ATTTTACACTATAAGGTTATTTAAGTA
1 ATTTTACCCTACAAGGGTATTTAAGTA
79302896 ATTTTACC
1 ATTTTACC
79302904 AACCGGGGGT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.44
Consensus pattern (27 bp):
ATTTTACCCTACAAGGGTATTTAAGTA
Found at i:79302944 original size:54 final size:54
Alignment explanation
Indices: 79302886--79303048 Score: 157
Period size: 54 Copynumber: 3.0 Consensus size: 54
79302876 ACTATAAGGT
* * *
79302886 TATTTAAGTAATTTTACCAACCGGGGGTACTTCAATAATTTTACAAGTCGGGGG
1 TATTTCAGTAATTTTACCAACCGAGGGTATTTCAATAATTTTACAAGTCGGGGG
* * * * ** ** * * ** *
79302940 TATTTCACTGATTTAACAAATTGAGGGTATTTCGGTAATTTCACAAATTAGAGG
1 TATTTCAGTAATTTTACCAACCGAGGGTATTTCAATAATTTTACAAGTCGGGGG
*
79302994 TATTTCAGTAATTTTA-CAACCCGAGGGTATTTCAATAATTTTACAAGTCGAGGG
1 TATTTCAGTAATTTTACCAA-CCGAGGGTATTTCAATAATTTTACAAGTCGGGGG
79303048 T
1 T
79303049 CTTAACGAAC
Statistics
Matches: 78, Mismatches: 30, Indels: 2
0.71 0.27 0.02
Matches are distributed among these distances:
53 2 0.03
54 76 0.97
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (54 bp):
TATTTCAGTAATTTTACCAACCGAGGGTATTTCAATAATTTTACAAGTCGGGGG
Found at i:79302953 original size:27 final size:27
Alignment explanation
Indices: 79302886--79303048 Score: 132
Period size: 27 Copynumber: 6.0 Consensus size: 27
79302876 ACTATAAGGT
* * *
79302886 TATTT-AAGTAATTTTACCAACCGGGGG
1 TATTTCAA-TAATTTTACAAATCGAGGG
* * *
79302913 TACTTCAATAATTTTACAAGTCGGGGG
1 TATTTCAATAATTTTACAAATCGAGGG
* * * *
79302940 TATTTCACTGATTTAACAAATTGAGGG
1 TATTTCAATAATTTTACAAATCGAGGG
** * *
79302967 TATTTCGGTAATTTCACAAAT-TAGAGG
1 TATTTCAATAATTTTACAAATCGAG-GG
* **
79302994 TATTTCAGTAATTTTACAACCCGAGGG
1 TATTTCAATAATTTTACAAATCGAGGG
*
79303021 TATTTCAATAATTTTACAAGTCGAGGG
1 TATTTCAATAATTTTACAAATCGAGGG
79303048 T
1 T
79303049 CTTAACGAAC
Statistics
Matches: 109, Mismatches: 24, Indels: 6
0.78 0.17 0.04
Matches are distributed among these distances:
26 2 0.02
27 103 0.94
28 4 0.04
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (27 bp):
TATTTCAATAATTTTACAAATCGAGGG
Found at i:79305721 original size:2 final size:2
Alignment explanation
Indices: 79305714--79305738 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
79305704 CTTGACTTTC
79305714 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
79305739 CACACACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:79311186 original size:13 final size:13
Alignment explanation
Indices: 79311168--79311201 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
79311158 TGAAAACTAA
79311168 AATTAACTAAATT
1 AATTAACTAAATT
79311181 AATTAACTAAATT
1 AATTAACTAAATT
79311194 AATTAACT
1 AATTAACT
79311202 TAAGAACACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (13 bp):
AATTAACTAAATT
Found at i:79313324 original size:29 final size:29
Alignment explanation
Indices: 79313282--79313340 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
79313272 CCGAATGTGT
79313282 TGGCTTTTATTAGTATTTGACTTATTTTG
1 TGGCTTTTATTAGTATTTGACTTATTTTG
79313311 TGGCTTTTATTAGTATTTGACTTATTTTG
1 TGGCTTTTATTAGTATTTGACTTATTTTG
79313340 T
1 T
79313341 ATAAGGCCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.17, C:0.07, G:0.17, T:0.59
Consensus pattern (29 bp):
TGGCTTTTATTAGTATTTGACTTATTTTG
Found at i:79330015 original size:32 final size:33
Alignment explanation
Indices: 79329974--79330050 Score: 113
Period size: 32 Copynumber: 2.4 Consensus size: 33
79329964 GTGAATAACC
79329974 CAGTATCAGTACAATC-TGAGCCAAAGCCCT-TT
1 CAGTATCAGTACAATCTTG-GCCAAAGCCCTATT
*
79330006 CAGTATCAGTACAGTCTTGGCCAAAGCCCTATT
1 CAGTATCAGTACAATCTTGGCCAAAGCCCTATT
*
79330039 CAATATCAGTAC
1 CAGTATCAGTAC
79330051 TGTGCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
32 26 0.63
33 15 0.37
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (33 bp):
CAGTATCAGTACAATCTTGGCCAAAGCCCTATT
Found at i:79330730 original size:19 final size:19
Alignment explanation
Indices: 79330695--79330734 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
79330685 TATGTAGGCC
*
79330695 CACGAGCCCATTGGGCCCA
1 CACGAGCCCATTCGGCCCA
79330714 CACG-GCCCATTTCGGCCCA
1 CACGAGCCCA-TTCGGCCCA
79330733 CA
1 CA
79330735 ATGGCCCAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.20, C:0.45, G:0.23, T:0.12
Consensus pattern (19 bp):
CACGAGCCCATTCGGCCCA
Found at i:79335276 original size:25 final size:25
Alignment explanation
Indices: 79335247--79335294 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79335237 TTATAATATG
* * *
79335247 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
79335272 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
79335295 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:79335377 original size:11 final size:11
Alignment explanation
Indices: 79335341--79335396 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
79335331 CATGGTATGT
79335341 ATGATATGCAC
1 ATGATATGCAC
* *
79335352 ATGACATG--T
1 ATGATATGCAC
79335361 ATGATATGCAC
1 ATGATATGCAC
79335372 ATGATATG-A-
1 ATGATATGCAC
*
79335381 ATGACATGCAC
1 ATGATATGCAC
79335392 ATGAT
1 ATGAT
79335397 GTATTTATGA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 14 0.40
10 2 0.06
11 19 0.54
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.29
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:79335396 original size:20 final size:20
Alignment explanation
Indices: 79335330--79335396 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
79335320 ATTTTGATAA
*
79335330 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
79335350 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
79335370 ACATGATATGAATGACATGC
1 ACATGATATGTATGATATGC
79335390 ACATGAT
1 ACATGAT
79335397 GTATTTATGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:79335524 original size:23 final size:24
Alignment explanation
Indices: 79335445--79335574 Score: 201
Period size: 24 Copynumber: 5.4 Consensus size: 24
79335435 GAGGAAGTGC
79335445 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
79335469 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
79335493 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
79335517 -AAAGGGCTTATGCCCCACTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
79335540 GAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
79335565 AAAAGAGGCT
1 AAAAG-GGCT
79335575 CGGCCTCTAG
Statistics
Matches: 98, Mismatches: 4, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
23 26 0.27
24 51 0.52
25 12 0.12
26 9 0.09
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:79335816 original size:31 final size:31
Alignment explanation
Indices: 79335781--79335844 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
79335771 CGTTTACAGT
79335781 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
79335812 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
79335843 AA
1 AA
79335845 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:79342226 original size:18 final size:17
Alignment explanation
Indices: 79342203--79342236 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
79342193 TAGCTGTGCC
79342203 GTTTTCTCTTCTGTATTA
1 GTTTTCTCTTCT-TATTA
79342221 GTTTTCTCTTCTTATT
1 GTTTTCTCTTCTTATT
79342237 TTCTTCCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.09, C:0.18, G:0.09, T:0.65
Consensus pattern (17 bp):
GTTTTCTCTTCTTATTA
Found at i:79343371 original size:25 final size:25
Alignment explanation
Indices: 79343342--79343389 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79343332 TTATAATATG
* * *
79343342 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
79343367 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
79343390 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:79343455 original size:20 final size:20
Alignment explanation
Indices: 79343432--79343489 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
79343422 TAAACATGGT
79343432 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
79343452 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
*
79343472 ATG-ATGACATGCACATGA
1 ATGTATGATATGCACATGA
79343490 TGTATTTATG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 14 0.39
20 22 0.61
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:79343583 original size:23 final size:24
Alignment explanation
Indices: 79343539--79343680 Score: 220
Period size: 23 Copynumber: 6.0 Consensus size: 24
79343529 GAGGAAGTGC
79343539 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
79343563 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
79343586 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
79343610 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
79343633 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
79343657 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
79343681 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 1, Indels: 11
0.90 0.01 0.09
Matches are distributed among these distances:
23 52 0.47
24 42 0.38
25 17 0.15
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:79343608 original size:47 final size:49
Alignment explanation
Indices: 79343539--79343680 Score: 222
Period size: 47 Copynumber: 3.0 Consensus size: 49
79343529 GAGGAAGTGC
79343539 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATG-CCCAGTTATT-
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
79343586 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
*
79343634 AAAAGGGCTT-TGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-CCAGTTAT
79343681 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 1, Indels: 8
0.91 0.01 0.08
Matches are distributed among these distances:
46 12 0.13
47 47 0.53
48 19 0.21
49 11 0.12
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
Done.