Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 257 of 410
Found at i:79343907 original size:31 final size:31
Alignment explanation
Indices: 79343872--79343935 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
79343862 CGTTTACAGT
79343872 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
79343903 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
79343934 AA
1 AA
79343936 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:79344913 original size:29 final size:29
Alignment explanation
Indices: 79344872--79344938 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
79344862 TGTTACACAA
* * **
79344872 GTAAATACTAAAATTTAAGGGGTTAA-AGT
1 GTAAATA-TAAAAGTTAAAGGACTAATAGT
79344901 GTAAATATGAAAAGTTAAAGGACTAATAGT
1 GTAAATAT-AAAAGTTAAAGGACTAATAGT
79344931 GTAAATAT
1 GTAAATAT
79344939 TTTAAGGGTG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 1 0.03
29 20 0.62
30 11 0.34
ACGTcount: A:0.48, C:0.03, G:0.19, T:0.30
Consensus pattern (29 bp):
GTAAATATAAAAGTTAAAGGACTAATAGT
Found at i:79354364 original size:8 final size:8
Alignment explanation
Indices: 79354353--79354380 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
79354343 TAAAGCGATA
79354353 AAATGCCG
1 AAATGCCG
79354361 AAATGCCG
1 AAATGCCG
79354369 AAATGCCG
1 AAATGCCG
79354377 AAAT
1 AAAT
79354381 TCTGGCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.14
Consensus pattern (8 bp):
AAATGCCG
Found at i:79354831 original size:25 final size:25
Alignment explanation
Indices: 79354802--79354849 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79354792 TTATAATATG
* * *
79354802 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
79354827 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
79354850 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:79354933 original size:11 final size:11
Alignment explanation
Indices: 79354897--79354952 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
79354887 CATGGTATGT
79354897 ATGATATGCAC
1 ATGATATGCAC
* *
79354908 ATGACATG--T
1 ATGATATGCAC
79354917 ATGATATGCAC
1 ATGATATGCAC
79354928 ATGATATG-A-
1 ATGATATGCAC
*
79354937 ATGACATGCAC
1 ATGATATGCAC
79354948 ATGAT
1 ATGAT
79354953 GTATTTATGA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 14 0.40
10 2 0.06
11 19 0.54
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.29
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:79354952 original size:20 final size:20
Alignment explanation
Indices: 79354886--79354952 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
79354876 ATTTTGATAA
*
79354886 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
79354906 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
79354926 ACATGATATGAATGACATGC
1 ACATGATATGTATGATATGC
79354946 ACATGAT
1 ACATGAT
79354953 GTATTTATGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:79355080 original size:23 final size:24
Alignment explanation
Indices: 79355001--79355130 Score: 192
Period size: 24 Copynumber: 5.4 Consensus size: 24
79354991 GAGGAAGTGC
79355001 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
79355025 AAAAGGGCTTATGCCTCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
79355049 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
79355073 -AAAGGGCTTATGCCCCACTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
79355096 AAAAAACGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
79355121 AAAAGAGGCT
1 AAAAG-GGCT
79355131 CGGCCTCCAG
Statistics
Matches: 96, Mismatches: 6, Indels: 8
0.87 0.05 0.07
Matches are distributed among these distances:
23 26 0.27
24 50 0.52
25 12 0.12
26 8 0.08
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:79355372 original size:31 final size:31
Alignment explanation
Indices: 79355337--79355400 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
79355327 CGTTTATAGT
79355337 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
79355368 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
79355399 AA
1 AA
79355401 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:79356674 original size:11 final size:11
Alignment explanation
Indices: 79356660--79356704 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
79356650 AGATAAATAT
79356660 TATTTTATTAA
1 TATTTTATTAA
*
79356671 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
79356684 TATTTTATTAT
1 TATTTTATTAA
79356695 TATTTTATTA
1 TATTTTATTA
79356705 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:79358631 original size:91 final size:92
Alignment explanation
Indices: 79358525--79358871 Score: 493
Period size: 91 Copynumber: 3.8 Consensus size: 92
79358515 GCTTTCTGAA
** * ** *
79358525 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACTAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCAT
* *
79358590 -GTTGAAAGATACCATGGCAACATGAT
66 GGTTGAAAGATACCATGGCAACGTGAC
** ** *
79358616 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAATAAAACCAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCAT
* *
79358681 GGTTG-AAGATACCATGGTAGCGTGAC
66 GGTTGAAAGATACCATGGCAACGTGAC
*
79358707 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATAAGACCAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCAT
79358772 GGTTGAAAGATACCATGGCAACGTGAC
66 GGTTGAAAGATACCATGGCAACGTGAC
* *
79358799 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCA
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAATAAGACCA
*
79358863 TAGTTGAAA
65 TGGTTGAAA
79358872 AACACTATGG
Statistics
Matches: 230, Mismatches: 23, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
91 140 0.61
92 90 0.39
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.21
Consensus pattern (92 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCAT
GGTTGAAAGATACCATGGCAACGTGAC
Found at i:79358734 original size:137 final size:137
Alignment explanation
Indices: 79358539--79358871 Score: 481
Period size: 137 Copynumber: 2.4 Consensus size: 137
79358529 AATGTGTAAG
* * *
79358539 ACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACTATGTTGAAAGATACCA
1 ACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATGTTGAAAGATACCA
* * ** * *
79358604 TGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAT
66 TGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAAA
79358669 GAATAAA
131 GAATAAA
* * * *
79358676 ACCATGGTTG-AAGATACCATGGTAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGATACC
1 ACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCAT-GTTGAAAGATACC
* *
79358740 ATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
65 ATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAA
*
79358805 AGAATAAG
130 AGAATAAA
79358813 ACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAA
1 ACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAGACCAT-GTTGAAA
79358872 AACACTATGG
Statistics
Matches: 172, Mismatches: 21, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
136 33 0.19
137 98 0.57
138 41 0.24
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (137 bp):
ACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATGTTGAAAGATACCA
TGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAAA
GAATAAA
Found at i:79358883 original size:46 final size:46
Alignment explanation
Indices: 79358525--79358871 Score: 484
Period size: 46 Copynumber: 7.6 Consensus size: 46
79358515 GCTTTCTGAA
** *
79358525 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
79358571 ATGAAATGTGTAAGACTAT-GTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
**
79358616 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * *
79358662 GGGAAATGAATAAAACCATGGTTG-AAGATACCATGGTAGCGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
79358707 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
79358753 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
79358799 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
79358845 A-GAAAATGAGTAAGACCATAGTTGAAA
1 ATG-AAATGAATAAGACCATGGTTGAAA
79358872 AACACTATGG
Statistics
Matches: 275, Mismatches: 23, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
45 84 0.31
46 191 0.69
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:79358902 original size:137 final size:136
Alignment explanation
Indices: 79358535--79358906 Score: 457
Period size: 137 Copynumber: 2.7 Consensus size: 136
79358525 ATGAAATGTG
* * *
79358535 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACTATGTTGAAAGAT
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATGTTGAAAGAT
*** *
79358600 ACCATGGCAACATGAT-ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGG
66 ACCATGGCAACATG-TCA-GAAATAAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
*
79358664 GAAATGAA
129 GAAAAGAA
* * * * *
79358672 TAAAACCATGGTTG-AAGATACCATGGTAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCAT-GTTGAAAGA
* *
79358736 TACCATGGCAACATGACATGAAA-AGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACA
65 TACCATGGCAACATGTCA-GAAATA-AATAAGACCATGGTTGAAAGATACCATGGCAACATGACA
*
79358800 TGAAAAGAA
128 GGAAAAGAA
*
79358809 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAGACCAT-GTTGAAAG
* * *
79358873 ACACTATGGCATCATGTCA-AAGATAAATAAGACC
64 ATACCATGGCAACATGTCAGAA-ATAAATAAGACC
79358907 CTGGATGGGA
Statistics
Matches: 201, Mismatches: 27, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
136 35 0.17
137 109 0.54
138 57 0.28
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (136 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATGTTGAAAGAT
ACCATGGCAACATGTCAGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGA
AAAGAA
Found at i:79359190 original size:16 final size:17
Alignment explanation
Indices: 79359169--79359201 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
79359159 ATGACGGAGC
*
79359169 ATGAAAT-ATTGATATA
1 ATGAAATGATTAATATA
79359185 ATGAAATGATTAATATA
1 ATGAAATGATTAATATA
79359202 TACTTATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTAATATA
Found at i:79361988 original size:11 final size:11
Alignment explanation
Indices: 79361974--79362029 Score: 67
Period size: 11 Copynumber: 4.9 Consensus size: 11
79361964 AGATAAATAT
79361974 TATTTTATTAA
1 TATTTTATTAA
*
79361985 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
79361998 TATTTTATTAT
1 TATTTTATTAA
*
79362009 TATTTTATTAT
1 TATTTTATTAA
79362020 TATTTTATTA
1 TATTTTATTA
79362030 GTATATAAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
11 27 0.68
12 6 0.15
13 7 0.17
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:79363384 original size:91 final size:92
Alignment explanation
Indices: 79363229--79363575 Score: 464
Period size: 91 Copynumber: 3.8 Consensus size: 92
79363219 GCTTTCTGAA
** * * * * **
79363229 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATAGCAACATGATATGAAATGTGTAAGACCAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCAT
* *
79363294 -GTTGAAAGATACCATGGCAACATGAT
66 GGTTGAAAGATACCATGGCAACGTGAC
** * *
79363320 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAATAAAACCAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCAT
*
79363385 GGTTG-AAGATACCATGGTAACGTGAC
66 GGTTGAAAGATACCATGGCAACGTGAC
* * *
79363411 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCAT
79363476 GGTTGAAAGATACCATGGCAACGTGAC
66 GGTTGAAAGATACCATGGCAACGTGAC
* * * * *
79363503 ATGAAAAGAATTAGACCATGGTTGAAAGATACCATGGCAACATGAAAGAAAATGAGTAAGACCAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCAT
*
79363568 AGTTGAAA
66 GGTTGAAA
79363576 AACACTATGG
Statistics
Matches: 226, Mismatches: 28, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
91 138 0.61
92 88 0.39
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (92 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCAT
GGTTGAAAGATACCATGGCAACGTGAC
Found at i:79363477 original size:137 final size:136
Alignment explanation
Indices: 79363243--79363575 Score: 452
Period size: 137 Copynumber: 2.4 Consensus size: 136
79363233 AATGTGTAAG
* * *
79363243 ACCATGGTTGAAAGACACCATAGCAACATGATATGAAATGTGTAAGACCATGTTGAAAGATACCA
1 ACCATGGTTGAAAGATACCATGGCAACATGA-ATGAAATGAGTAAGACCATGTTGAAAGATACCA
* * ** * *
79363308 TGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAT
65 TGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAAA
79363373 GAATAAA
130 GAATAAA
* * *
79363380 ACCATGGTTG-AAGATACCATGGTAACGTGACATGAAATGAATAAGACCATGGTTGAAAGATACC
1 ACCATGGTTGAAAGATACCATGGCAACATGA-ATGAAATGAGTAAGACCAT-GTTGAAAGATACC
* * *
79363444 ATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
64 ATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAA
* *
79363509 AGAATTAG
129 AGAATAAA
*
79363517 ACCATGGTTGAAAGATACCATGGCAACATGAAAGAAAATGAGTAAGACCATAGTTGAAA
1 ACCATGGTTGAAAGATACCATGGCAACATGAATG-AAATGAGTAAGACCAT-GTTGAAA
79363576 AACACTATGG
Statistics
Matches: 170, Mismatches: 23, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
136 33 0.19
137 97 0.57
138 40 0.24
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (136 bp):
ACCATGGTTGAAAGATACCATGGCAACATGAATGAAATGAGTAAGACCATGTTGAAAGATACCAT
GGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAAAG
AATAAA
Found at i:79363587 original size:46 final size:46
Alignment explanation
Indices: 79363229--79363575 Score: 457
Period size: 46 Copynumber: 7.6 Consensus size: 46
79363219 GCTTTCTGAA
** * * *
79363229 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATAGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
79363275 ATGAAATGTGTAAGACCAT-GTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
**
79363320 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * *
79363366 GGGAAATGAATAAAACCATGGTTG-AAGATACCATGGTAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
79363411 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
79363457 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
79363503 ATGAAAAGAATTAGACCATGGTTGAAAGATACCATGGCAACATGA-
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
79363548 AAGAAAATGAGTAAGACCATAGTTGAAA
1 ATG-AAATGAATAAGACCATGGTTGAAA
79363576 AACACTATGG
Statistics
Matches: 276, Mismatches: 22, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
45 85 0.31
46 191 0.69
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:79363606 original size:137 final size:136
Alignment explanation
Indices: 79363239--79363610 Score: 430
Period size: 137 Copynumber: 2.7 Consensus size: 136
79363229 ATGAAATGTG
* * * *
79363239 TAAGACCATGGTTGAAAGACACCATAGCAACATGATATGAAATGTGTAAGACCATGTTGAAAGAT
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATGTTGAAAGAT
*** *
79363304 ACCATGGCAACATGAT-ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGG
66 ACCATGGCAACATG-TCA-GAAATAAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
*
79363368 GAAATGAA
129 GAAAAGAA
* * * *
79363376 TAAAACCATGGTTG-AAGATACCATGGTAACGTGACATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCAT-GTTGAAAGA
* * *
79363440 TACCATGGCAACGTGACATGAAA-AGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACA
65 TACCATGGCAACATGTCA-GAAATA-AATAAGACCATGGTTGAAAGATACCATGGCAACATGACA
*
79363504 TGAAAAGAA
128 GGAAAAGAA
* * *
79363513 TTAGACCATGGTTGAAAGATACCATGGCAACATGA-AAGAAAATGAGTAAGACCATAGTTGAAAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAGACCAT-GTTGAAAG
* * *
79363577 ACACTATGGCATCATGTCA-AAGATAAATAAGACC
64 ATACCATGGCAACATGTCAGAA-ATAAATAAGACC
79363611 CTGGATGGGA
Statistics
Matches: 198, Mismatches: 30, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
136 35 0.18
137 108 0.55
138 55 0.28
ACGTcount: A:0.43, C:0.15, G:0.22, T:0.20
Consensus pattern (136 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATGTTGAAAGAT
ACCATGGCAACATGTCAGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGA
AAAGAA
Found at i:79363894 original size:16 final size:17
Alignment explanation
Indices: 79363873--79363905 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
79363863 ATTATGGAGC
*
79363873 ATGAAAT-ATTGATATA
1 ATGAAATGACTGATATA
79363889 ATGAAATGACTGATATA
1 ATGAAATGACTGATATA
79363906 TACTTATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.48, C:0.03, G:0.15, T:0.33
Consensus pattern (17 bp):
ATGAAATGACTGATATA
Found at i:79364824 original size:24 final size:24
Alignment explanation
Indices: 79364797--79364855 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
79364787 TTGGAGGCCT
79364797 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
** *
79364821 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-AATAAACTGGGGCAA
79364846 AGCCCTTTTA
1 AGCCCTTTTA
79364856 GCACTTCCTC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 5 0.17
24 5 0.17
25 19 0.66
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:79365094 original size:27 final size:27
Alignment explanation
Indices: 79365064--79365360 Score: 285
Period size: 27 Copynumber: 11.0 Consensus size: 27
79365054 AATGGTAGTT
* *
79365064 TACCCCAAAAGGGT-TTCTCGGTAATTC
1 TACCCTAAAAGGGTATT-TCAGTAATTC
* * *
79365091 TACCTTATAAGGGTATTTTAGTAATTC
1 TACCCTAAAAGGGTATTTCAGTAATTC
*
79365118 TACCCTACAAGGGTATTTCAGTAATTC
1 TACCCTAAAAGGGTATTTCAGTAATTC
* *
79365145 TACCCTACAGGGGTATTTCAGTAATTC
1 TACCCTAAAAGGGTATTTCAGTAATTC
* * *
79365172 TACCCTATAGGGGTATTTCAGAAATTC
1 TACCCTAAAAGGGTATTTCAGTAATTC
* * * *
79365199 TACCCTACGATGGGTATTTCGGTATTTC
1 TACCCTA-AAAGGGTATTTCAGTAATTC
* *
79365227 TACCCTACAAA-GGTATTCCGGTAATTC
1 TACCCTA-AAAGGGTATTTCAGTAATTC
* * *
79365254 TACCCTACAGGGGTATTTCAATAATTC
1 TACCCTAAAAGGGTATTTCAGTAATTC
* * *
79365281 TACCCTACAGGGGTATTTCAATAATTC
1 TACCCTAAAAGGGTATTTCAGTAATTC
* * *
79365308 TACCCTACAGGGGTATTTTAGTAATTC
1 TACCCTAAAAGGGTATTTCAGTAATTC
* *
79365335 TACCCT-ACAGGAGTATTTCAATAATT
1 TACCCTAAAAGG-GTATTTCAGTAATT
79365361 TTGTCAATTG
Statistics
Matches: 234, Mismatches: 32, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
26 3 0.01
27 205 0.88
28 26 0.11
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (27 bp):
TACCCTAAAAGGGTATTTCAGTAATTC
Found at i:79365146 original size:54 final size:54
Alignment explanation
Indices: 79365084--79365360 Score: 367
Period size: 54 Copynumber: 5.1 Consensus size: 54
79365074 GGGTTTCTCG
* * * *
79365084 GTAATTCTACCTTATAAGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCA
* *
79365138 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCA
* * * * * * *
79365192 GAAATTCTACCCTACGATGGGTATTTCGGTATTTCTACCCTACAAAGGTATTCCG
1 GTAATTCTACCCTAC-AGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCA
* *
79365247 GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCA
* *
79365301 ATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTAC-AGGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGG-GTATTTCA
*
79365355 ATAATT
1 GTAATT
79365361 TTGTCAATTG
Statistics
Matches: 193, Mismatches: 28, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
53 2 0.01
54 146 0.76
55 45 0.23
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.35
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCA
Found at i:79365229 original size:109 final size:108
Alignment explanation
Indices: 79365085--79365360 Score: 394
Period size: 109 Copynumber: 2.5 Consensus size: 108
79365075 GGTTTCTCGG
* * *
79365085 TAATTCTACCTTATAAGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
* *
79365150 TACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGA
66 TACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCA-A
* ** * * * *
79365194 -AATTCTACCCTACGATGGGTATTTCGGTATTTCTACCCTACAAAGGTATTCCGGTAATTCTACC
1 TAATTCTACCCTAC-AGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACC
79365258 CTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAA
65 CTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAA
*
79365302 TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTAC-AGGAGTATTTCAATAATT
1 TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGG-GTATTTCAGTAATT
79365361 TTGTCAATTG
Statistics
Matches: 145, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
107 2 0.01
108 46 0.32
109 97 0.67
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (108 bp):
TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
TACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAA
Found at i:79365437 original size:27 final size:26
Alignment explanation
Indices: 79365381--79365656 Score: 223
Period size: 27 Copynumber: 10.3 Consensus size: 26
79365371 AGGATAAAAC
* * *
79365381 GGTAATTCTGTAAATCG-GGGTACTTT
1 GGTAATTTTATAAA-CGAGGGTATTTT
* * *
79365407 AGTAATTTTACAAATCGAGGGTATTTC
1 GGTAATTTTATAAA-CGAGGGTATTTT
* * * *
79365434 AGTAATTTTGTAAAGTGAGGGTATTTC
1 GGTAATTTTATAAA-CGAGGGTATTTT
* *
79365461 GATAATTTTATAAACCACGGGTATTTT
1 GGTAATTTTATAAACGA-GGGTATTTT
* *
79365488 GGTAATTTTGTAAACCAAGGGTA-TTT
1 GGTAATTTTATAAA-CGAGGGTATTTT
* *
79365514 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACGA-GGGTATTTT
* *
79365541 GGTAATTTTGTAAACCAAGGGTATTTT
1 GGTAATTTTATAAA-CGAGGGTATTTT
* *
79365568 GGTAATTTTACAAACTGGGGGTATTTT
1 GGTAATTTTATAAAC-GAGGGTATTTT
* *
79365595 GGTAATTTTGTAAACCAAGGGTATTTT
1 GGTAATTTTATAAA-CGAGGGTATTTT
* *
79365622 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACGA-GGGTATTTT
*
79365649 GGTGATTT
1 GGTAATTT
79365657 GGTAAACTAA
Statistics
Matches: 204, Mismatches: 37, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
25 2 0.01
26 37 0.18
27 160 0.78
28 5 0.02
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (26 bp):
GGTAATTTTATAAACGAGGGTATTTT
Found at i:79365469 original size:54 final size:54
Alignment explanation
Indices: 79365381--79365663 Score: 347
Period size: 54 Copynumber: 5.3 Consensus size: 54
79365371 AGGATAAAAC
* * * * * * *
79365381 GGTAATTCTGTAAATC-GGGGTACTTTAGTAATTTTACAAATCGA-GGGTATTTC
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAA-CCACGGGTATTTT
* *** * * *
79365434 AGTAATTTTGTAAAGTGAGGGTATTTCGATAATTTTATAAACCACGGGTATTTT
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCACGGGTATTTT
*
79365488 GGTAATTTTGTAAACCAAGGGTA-TTTGGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCACGGGTATTTT
***
79365541 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACTGGGGGTATTTT
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCACGGGTATTTT
*
79365595 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCACGGGTATTTT
* *
79365649 GGTGATTTGGTAAAC
1 GGTAATTTTGTAAAC
79365664 TAAAGTATTC
Statistics
Matches: 201, Mismatches: 26, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
53 63 0.31
54 138 0.69
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (54 bp):
GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCACGGGTATTTT
Found at i:79365492 original size:107 final size:107
Alignment explanation
Indices: 79365381--79365647 Score: 349
Period size: 107 Copynumber: 2.5 Consensus size: 107
79365371 AGGATAAAAC
* * * * *
79365381 GGTAATTCTGTAAATC-GGGGTACTTTAGTAATTTTACAAATC-GAGGGTATTTCAGTAATTTTG
1 GGTAATTTTGTAAACCAAGGGTA-TTTGGTAATTTTACAAACCAG-GGGTATTTCAGTAATTTTG
*** *
79365444 TAAAGTGAGGGTATTTCGATAATTTTATAAACCACGGGTATTTT
64 TAAACCAAGGGTATTTCGATAATTTTACAAACCACGGGTATTTT
**
79365488 GGTAATTTTGTAAACCAAGGGTATTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTA
1 GGTAATTTTGTAAACCAAGGGTATTTGGTAATTTTACAAACCAGGGGTATTTCAGTAATTTTGTA
* * ***
79365553 AACCAAGGGTATTTTGGTAATTTTACAAACTGGGGGTATTTT
66 AACCAAGGGTATTTCGATAATTTTACAAACCACGGGTATTTT
79365595 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
1 GGTAATTTTGTAAACCAAGGGTA-TTTGGTAATTTTACAAACCAGGGGTATTT
79365648 TGGTGATTTG
Statistics
Matches: 141, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
107 106 0.75
108 35 0.25
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (107 bp):
GGTAATTTTGTAAACCAAGGGTATTTGGTAATTTTACAAACCAGGGGTATTTCAGTAATTTTGTA
AACCAAGGGTATTTCGATAATTTTACAAACCACGGGTATTTT
Found at i:79365663 original size:27 final size:27
Alignment explanation
Indices: 79365424--79365663 Score: 275
Period size: 27 Copynumber: 8.9 Consensus size: 27
79365414 TTACAAATCG
** ***
79365424 AGGGTATTTCAGTAATTTTGTAAAGTG
1 AGGGTATTTTGGTAATTTTGTAAACCA
* * *
79365451 AGGGTATTTCGATAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTGTAAACCA
*
79365478 CGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTGTAAACCA
**
79365505 AGGGTA-TTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTGTAAACCA
*
79365531 GGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTGTAAACCA
** **
79365558 AGGGTATTTTGGTAATTTTACAAACTG
1 AGGGTATTTTGGTAATTTTGTAAACCA
*
79365585 GGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTGTAAACCA
**
79365612 AGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTGTAAACCA
* * *
79365639 GGGGTATTTTGGTGATTTGGTAAAC
1 AGGGTATTTTGGTAATTTTGTAAAC
79365664 TAAAGTATTC
Statistics
Matches: 178, Mismatches: 34, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 23 0.13
27 155 0.87
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTGTAAACCA
Found at i:79367887 original size:25 final size:25
Alignment explanation
Indices: 79367859--79367928 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
79367849 CTCTTTTAAT
*
79367859 AACTGGGGCAGAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
79367884 AACTGGGGCAAAACCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
79367909 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
79367929 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:79368176 original size:27 final size:27
Alignment explanation
Indices: 79368146--79368434 Score: 282
Period size: 27 Copynumber: 10.7 Consensus size: 27
79368136 TTTACCCCAA
* * *
79368146 AAGGGTATCTC-GATAATTCTATCTTAC
1 AAGGGTATTTCAG-TAATTCTACCCTAC
*
79368173 AAGGGTATTTTAGTAATTCTACCCTAC
1 AAGGGTATTTCAGTAATTCTACCCTAC
*
79368200 ATGGGTATTTCAGTAATTCTACCCTAC
1 AAGGGTATTTCAGTAATTCTACCCTAC
* *
79368227 AGGGGTATTTCAGTAATTCTACCCTAT
1 AAGGGTATTTCAGTAATTCTACCCTAC
*
79368254 AGGGGTATTTCAGTAATTCTACCCTAC
1 AAGGGTATTTCAGTAATTCTACCCTAC
* * *
79368281 AATGGGTATTTC-GATATTTTTACCTTAC
1 AA-GGGTATTTCAG-TAATTCTACCCTAC
*
79368309 AAGGGTA-TTCCGATAATTCTACCCTAC
1 AAGGGTATTTCAG-TAATTCTACCCTAC
* * * *
79368336 AGGGGTATTTTAATAATTCTACCCTAT
1 AAGGGTATTTCAGTAATTCTACCCTAC
* * *
79368363 AGGGGTATTTCGGTAATTCTACCCTAT
1 AAGGGTATTTCAGTAATTCTACCCTAC
* *
79368390 AGGGGTATTT-TGATAATTCTACCCTAC
1 AAGGGTATTTCAG-TAATTCTACCCTAC
* *
79368417 -AGAAGTATTTCAATAATT
1 AAG-GGTATTTCAGTAATT
79368435 TTGTCAATTG
Statistics
Matches: 224, Mismatches: 30, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
26 5 0.02
27 194 0.87
28 25 0.11
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.37
Consensus pattern (27 bp):
AAGGGTATTTCAGTAATTCTACCCTAC
Found at i:79368220 original size:54 final size:54
Alignment explanation
Indices: 79368159--79368434 Score: 315
Period size: 54 Copynumber: 5.1 Consensus size: 54
79368149 GGTATCTCGA
* * * *
79368159 TAATTCTATCTTACAAGGGTATTTTAGTAATTCTACCCTACATGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAG
* *
79368213 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAG
* * * * * * *
79368267 TAATTCTACCCTACAATGGGTA-TTTCGATATTTTTACCTTACAAGGGTA-TTCCG
1 TAATTCTACCCTAC-AGGGGTATTTTAG-TAATTCTACCCTACAGGGGTATTTCAG
* * *
79368321 ATAATTCTACCCTACAGGGGTATTTTAATAATTCTACCCTATAGGGGTATTTCGG
1 -TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAG
* ** *
79368376 TAATTCTACCCTATAGGGGTATTTT-GATAATTCTACCCTACAGAAGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTTAG-TAATTCTACCCTACAGGGGTATTTCAG
79368430 TAATT
1 TAATT
79368435 TTGTCAATTG
Statistics
Matches: 185, Mismatches: 31, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
54 142 0.77
55 43 0.23
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (54 bp):
TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAG
Found at i:79368392 original size:136 final size:136
Alignment explanation
Indices: 79368148--79368417 Score: 400
Period size: 136 Copynumber: 2.0 Consensus size: 136
79368138 TACCCCAAAA
* ** * *
79368148 GGGTATCTCGATAATTCTATCTTACAAGGGTATTTTAGTAATTCTACCCTACATGGGTATTTCAG
1 GGGTATCTCGATAATTCTACCTTACAAGGGTATTCGAGTAATTCTACCCTACAGGGGTATTTCAA
79368213 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAG-TAATTCTACC
66 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTT-AGATAATTCTACC
79368277 CTACAAT
130 CTACAAT
* * * *
79368284 GGGTATTTCGATATTTTTACCTTACAAGGGTATTCCGA-TAATTCTACCCTACAGGGGTATTTTA
1 GGGTATCTCGATAATTCTACCTTACAAGGGTATT-CGAGTAATTCTACCCTACAGGGGTATTTCA
* * *
79368348 ATAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTGATAATTCTACC
65 ATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTAGATAATTCTACC
79368413 CTACA
130 CTACA
79368418 GAAGTATTTC
Statistics
Matches: 120, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
135 1 0.01
136 118 0.98
137 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (136 bp):
GGGTATCTCGATAATTCTACCTTACAAGGGTATTCGAGTAATTCTACCCTACAGGGGTATTTCAA
TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTAGATAATTCTACCC
TACAAT
Found at i:79368542 original size:54 final size:54
Alignment explanation
Indices: 79368479--79368739 Score: 335
Period size: 54 Copynumber: 4.8 Consensus size: 54
79368469 TCGGGAGTAC
* ** * ***
79368479 TTTGGTAATTTTACAAATCGA-GGGTATTTCAGTAATTTTGCAAATTGAGGGTAT
1 TTTGGTAATTTTACAAA-CCACGGGTATTTTGGTAATTTTGTAAACCAAGGGTAT
* * *
79368533 TTCGATAATTTTACAAACCACGGGTATTTTGGTAATTTTGTAAACCAATGGTAT
1 TTTGGTAATTTTACAAACCACGGGTATTTTGGTAATTTTGTAAACCAAGGGTAT
*
79368587 TTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTAT
1 TTTGGTAATTTTACAAACCACGGGTATTTTGGTAATTTTGTAAACCAAGGGTAT
*** * *
79368641 TTTGGTAATTTTACAAACTGGGGGTATTTTGGTAATTTTGTAATCCAAAGGTAT
1 TTTGGTAATTTTACAAACCACGGGTATTTTGGTAATTTTGTAAACCAAGGGTAT
* * *
79368695 TTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTGGTAAAC
1 TTTGGTAATTTTACAAACCACGGGTATTTTGGTAATTTTGTAAAC
79368740 TAAAGTATTC
Statistics
Matches: 183, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
53 2 0.01
54 181 0.99
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
TTTGGTAATTTTACAAACCACGGGTATTTTGGTAATTTTGTAAACCAAGGGTAT
Found at i:79368564 original size:81 final size:80
Alignment explanation
Indices: 79368479--79368732 Score: 276
Period size: 81 Copynumber: 3.1 Consensus size: 80
79368469 TCGGGAGTAC
** ** * *
79368479 TTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAATTGAGGGTATTTCGATAATTT
1 TTTGGTAATTTTACAAA-CGAGGGTATTTTGGTAATTTTGCAAATCAAGGGTATTTTGGTAATTT
*
79368544 TACAAACCACGGGTAT
65 TACAAACCAAGGGTAT
** * * * * *
79368560 TTTGGTAATTTTGTAAACCAATGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 TTTGGTAATTTTACAAA-CGAGGGTATTTTGGTAATTTTGCAAATCAAGGGTATTTTGGTAATTT
**
79368625 TGTAAACCAAGGGTAT
65 TACAAACCAAGGGTAT
* * *
79368641 TTTGGTAATTTTACAAACTGGGGGTATTTTGGTAATTTTG-TAATCCAAAGGTATTTTGGTAATT
1 TTTGGTAATTTTACAAAC-GAGGGTATTTTGGTAATTTTGCAAAT-CAAGGGTATTTTGGTAATT
*
79368705 TTACAAACCAGGGGTAT
64 TTACAAACCAAGGGTAT
*
79368722 TTTGGTGATTT
1 TTTGGTAATTT
79368733 GGTAAACTAA
Statistics
Matches: 140, Mismatches: 31, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
80 3 0.02
81 137 0.98
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (80 bp):
TTTGGTAATTTTACAAACGAGGGTATTTTGGTAATTTTGCAAATCAAGGGTATTTTGGTAATTTT
ACAAACCAAGGGTAT
Found at i:79368739 original size:27 final size:27
Alignment explanation
Indices: 79368479--79368739 Score: 243
Period size: 27 Copynumber: 9.7 Consensus size: 27
79368469 TCGGGAGTAC
** * *
79368479 TTTGGTAATTTTACAAATCGAGGGTAT
1 TTTGGTAATTTTGTAAACCAAGGGTAT
** * ***
79368506 TTCAGTAATTTTGCAAATTGAGGGTAT
1 TTTGGTAATTTTGTAAACCAAGGGTAT
* * ** *
79368533 TTCGATAATTTTACAAACCACGGGTAT
1 TTTGGTAATTTTGTAAACCAAGGGTAT
*
79368560 TTTGGTAATTTTGTAAACCAATGGTAT
1 TTTGGTAATTTTGTAAACCAAGGGTAT
** *
79368587 TTTGGTAATTTTACAAACCAGGGGTAT
1 TTTGGTAATTTTGTAAACCAAGGGTAT
79368614 TTTGGTAATTTTGTAAACCAAGGGTAT
1 TTTGGTAATTTTGTAAACCAAGGGTAT
** ***
79368641 TTTGGTAATTTTACAAACTGGGGGTAT
1 TTTGGTAATTTTGTAAACCAAGGGTAT
* *
79368668 TTTGGTAATTTTGTAATCCAAAGGTAT
1 TTTGGTAATTTTGTAAACCAAGGGTAT
** *
79368695 TTTGGTAATTTTACAAACCAGGGGTAT
1 TTTGGTAATTTTGTAAACCAAGGGTAT
* *
79368722 TTTGGTGATTTGGTAAAC
1 TTTGGTAATTTTGTAAAC
79368740 TAAAGTATTC
Statistics
Matches: 189, Mismatches: 45, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 189 1.00
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
TTTGGTAATTTTGTAAACCAAGGGTAT
Found at i:79374664 original size:28 final size:28
Alignment explanation
Indices: 79374603--79374700 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
79374593 TCACAAATTG
** * *
79374603 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
79374632 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
79374660 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
79374688 GCACTAAGTGTGC
1 GCACTAAGTGTGC
79374701 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:79382334 original size:12 final size:12
Alignment explanation
Indices: 79382317--79382341 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79382307 CCTAACCTAT
79382317 TAGGCAAAGTTG
1 TAGGCAAAGTTG
79382329 TAGGCAAAGTTG
1 TAGGCAAAGTTG
79382341 T
1 T
79382342 TATTGGTTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (12 bp):
TAGGCAAAGTTG
Found at i:79384481 original size:12 final size:12
Alignment explanation
Indices: 79384464--79384515 Score: 68
Period size: 12 Copynumber: 4.3 Consensus size: 12
79384454 TATGACATTT
79384464 AAATATATATAG
1 AAATATATATAG
*
79384476 AAATATATATAT
1 AAATATATATAG
* *
79384488 ATATATATATAT
1 AAATATATATAG
*
79384500 ATATATATATAG
1 AAATATATATAG
79384512 AAAT
1 AAAT
79384516 TGATTCATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (12 bp):
AAATATATATAG
Found at i:79384529 original size:2 final size:2
Alignment explanation
Indices: 79384466--79384510 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
79384456 TGACATTTAA
* *
79384466 AT AT AT AT AG AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79384508 AT A
1 AT A
79384511 GAAATTGATT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (2 bp):
AT
Found at i:79384603 original size:90 final size:90
Alignment explanation
Indices: 79384505--79384690 Score: 372
Period size: 90 Copynumber: 2.1 Consensus size: 90
79384495 TATATATATA
79384505 TATATAGAAATTGATTCATATATATGTTTTGTTTGTATATATAAATATATAATATATGCATGCTT
1 TATATAGAAATTGATTCATATATATGTTTTGTTTGTATATATAAATATATAATATATGCATGCTT
79384570 TGATTGGTTTAATGTTTTAGAAAAT
66 TGATTGGTTTAATGTTTTAGAAAAT
79384595 TATATAGAAATTGATTCATATATATGTTTTGTTTGTATATATAAATATATAATATATGCATGCTT
1 TATATAGAAATTGATTCATATATATGTTTTGTTTGTATATATAAATATATAATATATGCATGCTT
79384660 TGATTGGTTTAATGTTTTAGAAAAT
66 TGATTGGTTTAATGTTTTAGAAAAT
79384685 TATATA
1 TATATA
79384691 AATATATATG
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 96 1.00
ACGTcount: A:0.36, C:0.03, G:0.13, T:0.48
Consensus pattern (90 bp):
TATATAGAAATTGATTCATATATATGTTTTGTTTGTATATATAAATATATAATATATGCATGCTT
TGATTGGTTTAATGTTTTAGAAAAT
Found at i:79390282 original size:14 final size:14
Alignment explanation
Indices: 79390248--79390283 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
79390238 TTATTTTTCA
*
79390248 TTCTCTTTTTTCTT
1 TTCTTTTTTTTCTT
79390262 TTCTTTTTTTTCTT
1 TTCTTTTTTTTCTT
79390276 TT-TTTTTT
1 TTCTTTTTT
79390284 GGGGGGGCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 6 0.29
14 15 0.71
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (14 bp):
TTCTTTTTTTTCTT
Found at i:79391825 original size:15 final size:15
Alignment explanation
Indices: 79391805--79391834 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
79391795 ATTTATATTT
79391805 ATATATGAATATGTC
1 ATATATGAATATGTC
79391820 ATATATGAATATGTC
1 ATATATGAATATGTC
79391835 GACACATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (15 bp):
ATATATGAATATGTC
Found at i:79402967 original size:28 final size:28
Alignment explanation
Indices: 79402894--79402968 Score: 114
Period size: 28 Copynumber: 2.7 Consensus size: 28
79402884 TATATATATG
* *
79402894 TGGCACTTAGTGTGTGAAATATTGAGAA
1 TGGCACTTAGTGTGCGAGATATTGAGAA
* *
79402922 TGGCACTTGGTGTGCGAGATATTGAGTA
1 TGGCACTTAGTGTGCGAGATATTGAGAA
79402950 TGGCACTTAGTGTGCGAGA
1 TGGCACTTAGTGTGCGAGA
79402969 CATCGAAGAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.25, C:0.11, G:0.33, T:0.31
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAGATATTGAGAA
Found at i:79405025 original size:36 final size:38
Alignment explanation
Indices: 79404931--79405028 Score: 134
Period size: 37 Copynumber: 2.7 Consensus size: 38
79404921 GAGTATGTGT
*
79404931 AAGACCATAG-CTGGGCTATGGCATCATGATGACATGA
1 AAGACCATAGTCTGGGCTATGGCATTATGATGACATGA
*
79404968 AAGACCATAGT-TGGGCTATGGCATTATGAT-ACGTGA
1 AAGACCATAGTCTGGGCTATGGCATTATGATGACATGA
79405004 AAGACCAT-GTCTGGGAC-ATGGCATT
1 AAGACCATAGTCTGGG-CTATGGCATT
79405029 GATATGAGAT
Statistics
Matches: 56, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
35 2 0.04
36 25 0.45
37 29 0.52
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (38 bp):
AAGACCATAGTCTGGGCTATGGCATTATGATGACATGA
Found at i:79405051 original size:42 final size:42
Alignment explanation
Indices: 79404999--79405227 Score: 206
Period size: 42 Copynumber: 5.3 Consensus size: 42
79404989 CATTATGATA
* * **
79404999 CGTGAAAGACCATGTCTGGGACATGGCATTGATATGAGATCC
1 CGTGTAAGACCATGTCTGGGATATGGCATTGATATGAGATTT
* *
79405041 CGTGTAAGACCATATCTGGGATATGGCATCAACATCGATATGAGATTA
1 CGTGTAAGACCATGTCTGGGATATGGCAT-----T-GATATGAGATTT
* * * *
79405089 CGTGTAAGACTATATCTGGGATATGGCTTTGGTATGAGATTT
1 CGTGTAAGACCATGTCTGGGATATGGCATTGATATGAGATTT
* * * * *
79405131 TGTGTAAGACCGTGTCTGGGATACGGCATCGATATGTGATTT
1 CGTGTAAGACCATGTCTGGGATATGGCATTGATATGAGATTT
* * * * * *
79405173 CGTATAAGACCATGTCTGGGACATGTCATCGATGTGAGACTT
1 CGTGTAAGACCATGTCTGGGATATGGCATTGATATGAGATTT
*
79405215 CATGTAAGACCAT
1 CGTGTAAGACCAT
79405228 AGTTGGACTA
Statistics
Matches: 152, Mismatches: 29, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
42 113 0.74
43 1 0.01
47 1 0.01
48 37 0.24
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGATATGGCATTGATATGAGATTT
Found at i:79405150 original size:90 final size:90
Alignment explanation
Indices: 79404997--79405160 Score: 220
Period size: 90 Copynumber: 1.8 Consensus size: 90
79404987 GGCATTATGA
*
79404997 TACGTGAAAGACCATGTCTGGGACATGGCATTGATATGAGATCCCGTGTAAGACCATATCTGGGA
1 TACGTGAAAGACCATATCTGGGACATGGCATTGATATGAGATCCCGTGTAAGACCATATCTGGGA
*
79405062 TATGGCATCAACATCGATATGAGAT
66 TACGGCATCAACATCGATATGAGAT
* * * * * *** * *
79405087 TACGTGTAAGACTATATCTGGGATATGGCTTTGGTATGAGATTTTGTGTAAGACCGTGTCTGGGA
1 TACGTGAAAGACCATATCTGGGACATGGCATTGATATGAGATCCCGTGTAAGACCATATCTGGGA
79405152 TACGGCATC
66 TACGGCATC
79405161 GATATGTGAT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
90 62 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (90 bp):
TACGTGAAAGACCATATCTGGGACATGGCATTGATATGAGATCCCGTGTAAGACCATATCTGGGA
TACGGCATCAACATCGATATGAGAT
Found at i:79406292 original size:47 final size:47
Alignment explanation
Indices: 79406233--79406335 Score: 179
Period size: 47 Copynumber: 2.2 Consensus size: 47
79406223 AATAGATAAG
*
79406233 TATTGTTTTTCTTTTGGTTTCTCTAAGAAAATCATCCGGATCTTTAT
1 TATTATTTTTCTTTTGGTTTCTCTAAGAAAATCATCCGGATCTTTAT
* *
79406280 TATTATTTTTCTTTTGGTTTCTTTGAGAAAATCATCCGGATCTTTAT
1 TATTATTTTTCTTTTGGTTTCTCTAAGAAAATCATCCGGATCTTTAT
79406327 TATTATTTT
1 TATTATTTT
79406336 CTTATGAGTT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 53 1.00
ACGTcount: A:0.21, C:0.13, G:0.12, T:0.54
Consensus pattern (47 bp):
TATTATTTTTCTTTTGGTTTCTCTAAGAAAATCATCCGGATCTTTAT
Found at i:79410240 original size:31 final size:31
Alignment explanation
Indices: 79410199--79410282 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
79410189 TCAGTCTCAA
79410199 CATAT-ACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
*
79410229 CATATCACTGGGCTGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
*
79410260 CATATCACCGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
79410283 ACTGTAAACA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATTATT
Found at i:79410608 original size:10 final size:10
Alignment explanation
Indices: 79410595--79410633 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
79410585 ATATATGAAT
79410595 ATATCATGGC
1 ATATCATGGC
79410605 ATATCATGTGC
1 ATATCATG-GC
79410616 ATATCATGGC
1 ATATCATGGC
79410626 ATATCATG
1 ATATCATG
79410634 TAAAGAACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:79410621 original size:21 final size:21
Alignment explanation
Indices: 79410595--79410634 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
79410585 ATATATGAAT
79410595 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
79410616 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
79410635 AAAGAACAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:79410702 original size:25 final size:25
Alignment explanation
Indices: 79410674--79410722 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
79410664 TAGCATATCT
* *
79410674 CTAGGGGTATAATGGTCATTTTCAC
1 CTAGGGGCAAAATGGTCATTTTCAC
*
79410699 CTAGGGGCAAAATGTTCATTTTCA
1 CTAGGGGCAAAATGGTCATTTTCA
79410723 TATTATAGGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (25 bp):
CTAGGGGCAAAATGGTCATTTTCAC
Found at i:79419943 original size:28 final size:28
Alignment explanation
Indices: 79419870--79419944 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
79419860 TATATAAATG
* * * *
79419870 TGGCATTTAGTGTGTGAAATTTTGAGAA
1 TGGCACTTAGTGTGCGAGATATTGAGAA
* *
79419898 TGGCACTTGGTGTGCGAGATATTGAGTA
1 TGGCACTTAGTGTGCGAGATATTGAGAA
79419926 TGGCACTTAGTGTGCGAGA
1 TGGCACTTAGTGTGCGAGA
79419945 CATCGAAGAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.24, C:0.09, G:0.33, T:0.33
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAGATATTGAGAA
Found at i:79423354 original size:21 final size:21
Alignment explanation
Indices: 79423330--79423372 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
79423320 AGCTATCCCA
79423330 TGCATCAATTTTTTCAATTGT
1 TGCATCAATTTTTTCAATTGT
79423351 TGCATCAATTTTTTCAATTGT
1 TGCATCAATTTTTTCAATTGT
79423372 T
1 T
79423373 CAGTTTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.14, G:0.09, T:0.53
Consensus pattern (21 bp):
TGCATCAATTTTTTCAATTGT
Found at i:79426067 original size:30 final size:30
Alignment explanation
Indices: 79426017--79426078 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
79426007 TTTAAAGAGG
*
79426017 TTGCCTGCAAATCAAGTTAAACAAAATATA
1 TTGCCTGCAAATCAACTTAAACAAAATATA
* *
79426047 TTGCTTGCAAGTCAACTTAAACAAAATATA
1 TTGCCTGCAAATCAACTTAAACAAAATATA
79426077 TT
1 TT
79426079 TTCTTTTTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.44, C:0.16, G:0.10, T:0.31
Consensus pattern (30 bp):
TTGCCTGCAAATCAACTTAAACAAAATATA
Found at i:79428015 original size:21 final size:21
Alignment explanation
Indices: 79427989--79428028 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
79427979 TTCTTGAAAT
*
79427989 AGGGCAACACGCCCGTGTGGA
1 AGGGCAACACGCCCATGTGGA
79428010 AGGGCAACACGCCCATGTG
1 AGGGCAACACGCCCATGTG
79428029 CTCATTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.30, G:0.35, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGGA
Found at i:79429367 original size:46 final size:46
Alignment explanation
Indices: 79429220--79429468 Score: 197
Period size: 46 Copynumber: 5.3 Consensus size: 46
79429210 CCATTCCTAA
*
79429220 ACATGGTCTTACACTGACTCATCATGCATC-AGTGCCGATGCCATGTCCCAG
1 ACAT-GTCTTACACTGGCTC-TCAT--ATCGAG-GCCGATG-CATGTCCCAG
* * *
79429271 ACATGGTCTTACACTGACACATC-T-T-GTA-GCTGATGCATGTCCCAG
1 ACAT-GTCTTACACTGGCTC-TCATATCG-AGGCCGATGCATGTCCCAG
79429316 ACATGTCTTACACTGGCT-TACATATCGAGGCCGATGCATGTCCCAG
1 ACATGTCTTACACTGGCTCT-CATATCGAGGCCGATGCATGTCCCAG
* * * * * * * * * *
79429362 GCATGTCTGATACTAGCTCTCGTCTCAATGTCGATGCCATGTCCCCG
1 ACATGTCTTACACTGGCTCTCATATCGAGGCCGATG-CATGTCCCAG
*
79429409 ACATGATCTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCCCAG
1 ACATG-TCTTACACTGGCTCTCAT-ATCGAGGCCGATGCATGTCCCAG
79429456 ACATGTCTTACAC
1 ACATGTCTTACAC
79429469 AAGCACACAA
Statistics
Matches: 161, Mismatches: 26, Indels: 27
0.75 0.12 0.13
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 13 0.08
45 16 0.10
46 56 0.35
47 29 0.18
48 21 0.13
49 1 0.01
50 1 0.01
51 22 0.14
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
ACATGTCTTACACTGGCTCTCATATCGAGGCCGATGCATGTCCCAG
Found at i:79440093 original size:440 final size:442
Alignment explanation
Indices: 79439270--79440155 Score: 1605
Period size: 440 Copynumber: 2.0 Consensus size: 442
79439260 GACACCTACT
* * *
79439270 ATTTATGGTGTATGTCACATGGGCACGTCATTGACCTTGCCTATTTCATCGCCCTCGCGATTCAG
1 ATTTATGGTGTATGTCACACGGGCACGTCATCGACCTTGCCTATTTCATCGCCCTCGCGATTCAA
*
79439335 CACCAGACTGAGCGGCATAGGAAGGGGGTCATCTCCATTAGCCCCTATGGTACCTGGTTGGCTCA
66 CACCAGACGGAGCGGCATAGGAAGGGGGTCATCTCCATTAGCCCCTATGGTACCTGGTTGGCTCA
79439400 ACACTTCGGGCTCCTCAGCACCGCAGCCCAAGAATCATCCTTAACCCTCATTGGCCAGATGTCTC
131 ACACTTCGGGCTCCTCAGCACCGCAGCCCAAGAATCATCCTTAACCCTCATTGGCCAGATGTCTC
*
79439465 CACAAGGCATCTCGAGCATGCTTAGCATGAGGATGATCGAAAAGTGCCGAGGAACCTACCCTCCT
196 CACAAGGCATCTCGAGCATGCTTAGCATGAGGATGATCGAAAAGCGCCGAGGAACCTACCCTCCT
*
79439530 CATTATCGTCTCGCCCAATCTACCGAGGAGGAGGCCTACGAAGACATTCCTGATAATGACCCTCC
261 CAATATCGTCTCGCCCAATCTACCGAGGAGGAGGCCTACGAAGACATTCCTGATAATGACCCTCC
79439595 ACAGCACGAGGACCCACCGACTCAGCCACCACCACCCTCTCGTCCAGTTCATGCGGCGACTTCAT
326 ACAGCACGAGGACCCACCGACTCAGCCACCACCACCCTCTCGTCCAGTTCATGCGGCGACTTCAT
79439660 ATGCTGACATCTCTGAGCGCCTCACTCAATTCGAGCAGTAGTGTTTTCAACG
391 ATGCTGACATCTCTGAGCGCCTCACTCAATTCGAGCAGTAGTGTTTTCAACG
*
79439712 ATTTATGGTGTATGTCGCACGGGCACGTCATCGACCTTGCCTATTTCATCGCCCTCGCGATTCAA
1 ATTTATGGTGTATGTCACACGGGCACGTCATCGACCTTGCCTATTTCATCGCCCTCGCGATTCAA
*
79439777 CACCAGA-GGAGTGGCATAGGAAGGGGGTCATCTCCATTAGCCCCTATGGTACCTGGTTGGCTCA
66 CACCAGACGGAGCGGCATAGGAAGGGGGTCATCTCCATTAGCCCCTATGGTACCTGGTTGGCTCA
*
79439841 ACACTTCGGGCTCCTCAGCA-CGCAGCCCAAGAATCATCCTTAACCTTCATTGGCCAGATGTCTC
131 ACACTTCGGGCTCCTCAGCACCGCAGCCCAAGAATCATCCTTAACCCTCATTGGCCAGATGTCTC
* * *
79439905 CACAAGGCATCTCGAGCATTCTTAGCATGAGGATGATCGAAAAGCGCCGAGGAACTTACCTTCCT
196 CACAAGGCATCTCGAGCATGCTTAGCATGAGGATGATCGAAAAGCGCCGAGGAACCTACCCTCCT
*
79439970 CAATATCGTCTCGCCCAATCTACCGAGGAGGAGGCCTATGAAGACATTCCTGATAATGACCCTCC
261 CAATATCGTCTCGCCCAATCTACCGAGGAGGAGGCCTACGAAGACATTCCTGATAATGACCCTCC
* *
79440035 ACAGCACGAGGACCCACCGATTCAGTCACCACCACCCTCTCGTCCAGTTCATGCGGCGACTTCAT
326 ACAGCACGAGGACCCACCGACTCAGCCACCACCACCCTCTCGTCCAGTTCATGCGGCGACTTCAT
* *
79440100 ATGCTGACATCTCTGAGCGCCTCACTCGATTCGAGCAGTAGTGTTTTCAATG
391 ATGCTGACATCTCTGAGCGCCTCACTCAATTCGAGCAGTAGTGTTTTCAACG
79440152 ATTT
1 ATTT
79440156 GACAACATTG
Statistics
Matches: 427, Mismatches: 17, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
440 284 0.67
441 75 0.18
442 68 0.16
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.24
Consensus pattern (442 bp):
ATTTATGGTGTATGTCACACGGGCACGTCATCGACCTTGCCTATTTCATCGCCCTCGCGATTCAA
CACCAGACGGAGCGGCATAGGAAGGGGGTCATCTCCATTAGCCCCTATGGTACCTGGTTGGCTCA
ACACTTCGGGCTCCTCAGCACCGCAGCCCAAGAATCATCCTTAACCCTCATTGGCCAGATGTCTC
CACAAGGCATCTCGAGCATGCTTAGCATGAGGATGATCGAAAAGCGCCGAGGAACCTACCCTCCT
CAATATCGTCTCGCCCAATCTACCGAGGAGGAGGCCTACGAAGACATTCCTGATAATGACCCTCC
ACAGCACGAGGACCCACCGACTCAGCCACCACCACCCTCTCGTCCAGTTCATGCGGCGACTTCAT
ATGCTGACATCTCTGAGCGCCTCACTCAATTCGAGCAGTAGTGTTTTCAACG
Found at i:79446056 original size:40 final size:40
Alignment explanation
Indices: 79446001--79446201 Score: 253
Period size: 40 Copynumber: 5.0 Consensus size: 40
79445991 ATGATAACCA
* * *
79446001 GGCTAAGTCCCGAAGGCATTTTTGCTAGTGACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCG
79446041 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCG
* *
79446081 GGCTAAGTTCCGAAGGCATTTGTACGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * ** *
79446121 GGTTAAGTCCCAAAGGCATTTGTGCGAACTACTATATCTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* **
79446161 GGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
79446201 G
1 G
79446202 TTGAAGCCCG
Statistics
Matches: 140, Mismatches: 20, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
40 139 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:79447955 original size:27 final size:27
Alignment explanation
Indices: 79447918--79448117 Score: 213
Period size: 27 Copynumber: 7.4 Consensus size: 27
79447908 TGGATAAGTT
* *
79447918 GTAGAAATACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
79447945 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*** *
79447972 GTAGAATTTTTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
** *
79447999 GTAGAATTATTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
79448026 ATAGACTTACCGAAATACCCTTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
79448053 GTAGAAATT-CCAAAATACCCCTGTAGG
1 GTAG-AATTACCGAAATACCCCTGTAGG
* * * *
79448080 GTAGAATTACTGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
79448107 GTAAAATTACC
1 GTAGAATTACC
79448118 ATTTTGCCCC
Statistics
Matches: 147, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 4 0.03
27 140 0.95
28 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:79455611 original size:27 final size:27
Alignment explanation
Indices: 79455483--79455655 Score: 177
Period size: 27 Copynumber: 6.4 Consensus size: 27
79455473 TGGATAAGTT
* *
79455483 GTAGAATTATCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
79455510 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
***
79455537 GTAGAATTATTAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
79455564 ATAGAATTACCGAAATACCCTTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
79455591 GTAGAAATACCGAAATACCCTTATGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
79455618 GTAAAATTACC-ATTATACCCTTGTGGG
1 GTAGAATTACCGA-AATACCCCTGTAGG
*
79455645 GTAAAATTACC
1 GTAGAATTACC
79455656 ATTTTGCCCC
Statistics
Matches: 127, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
26 1 0.01
27 126 0.99
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:79459023 original size:89 final size:89
Alignment explanation
Indices: 79458871--79459045 Score: 287
Period size: 89 Copynumber: 2.0 Consensus size: 89
79458861 TCACACACAG
* *
79458871 CCTAAGCATCTAGGGCCACGCCCGTGTCCCATGCCCGTGTTAATTAAATTCTAAATTCAAACCTA
1 CCTAAGCATCTAGGGACACGCCCGTGTCCCATGCCCGTGTTAATGAAATTCTAAATTCAAACCTA
* *
79458936 TAAGGGTTTTCACATGGCCTGGCA
66 CAAGGGTTTTCACACGGCCTGGCA
* * *
79458960 CCTAAGTATCTAGGGACACGCCCGTGTCCCATGCCCGTGTTAATGAAATTTTAAATTCGAACCTA
1 CCTAAGCATCTAGGGACACGCCCGTGTCCCATGCCCGTGTTAATGAAATTCTAAATTCAAACCTA
79459025 CAAGGGTTTTCACACGGCCTG
66 CAAGGGTTTTCACACGGCCTG
79459046 ACACATACTC
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
89 79 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (89 bp):
CCTAAGCATCTAGGGACACGCCCGTGTCCCATGCCCGTGTTAATGAAATTCTAAATTCAAACCTA
CAAGGGTTTTCACACGGCCTGGCA
Found at i:79460883 original size:68 final size:67
Alignment explanation
Indices: 79460811--79460960 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
79460801 CATCATGTGT
* * * *
79460811 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
79460873 ATGTAG
62 ATGTAG
** * *
79460879 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
79460944 AG
66 AG
79460946 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
79460961 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:79460916 original size:64 final size:64
Alignment explanation
Indices: 79460835--79461018 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
79460825 AGACATTATG
* *
79460835 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
79460899 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
79460964 AA
63 AA
* * * *
79460966 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
79461019 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:79463665 original size:37 final size:37
Alignment explanation
Indices: 79463606--79463714 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
79463596 AGCTCAGACG
* * *
79463606 AAATCTCCACACGAAGTTATCGGGTCTCACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
79463643 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
79463680 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
79463715 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:79463898 original size:48 final size:48
Alignment explanation
Indices: 79463759--79463904 Score: 220
Period size: 48 Copynumber: 3.0 Consensus size: 48
79463749 TGTTACAACA
* * * * *
79463759 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAC
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
79463807 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
79463855 TTCATATTAGCCATTCGGCTTTACCGCATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
79463903 TT
1 TT
79463905 ATTTATCTTG
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:79467816 original size:94 final size:92
Alignment explanation
Indices: 79467653--79467832 Score: 236
Period size: 94 Copynumber: 1.9 Consensus size: 92
79467643 TGACTCATCC
* **
79467653 ATCAAGTCGATTCCATATCCCAGACATGTCATACACTGGCTTACATCTTGAGGCCAATGCATGTC
1 ATCAAGTCGATGCCATATCCCAGACATGTCATACACTGGCTTACATAATGAGGCCAATGCATGTC
79467718 CCAGACATGTCTTACACTAGCTCCCGT
66 CCAGACATGTCTTACACTAGCTCCCGT
* * * * * *
79467745 ATCAATGTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTTTCCTAAT-ATGGCCGATGCAT
1 ATCAA-GTCGATGCCATATCCCAGACAT-GTCATACACTGGCTTACATAATGA-GGCCAATGCAT
*
79467809 GTTCCAGACATGTCTTACACTAGC
63 GTCCCAGACATGTCTTACACTAGC
79467833 ACACAAATAA
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
92 5 0.07
93 20 0.27
94 50 0.67
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (92 bp):
ATCAAGTCGATGCCATATCCCAGACATGTCATACACTGGCTTACATAATGAGGCCAATGCATGTC
CCAGACATGTCTTACACTAGCTCCCGT
Found at i:79470339 original size:28 final size:28
Alignment explanation
Indices: 79470270--79470370 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
79470260 GACAAGATTG
* * * *
79470270 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
79470300 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
79470328 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
79470357 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79470371 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:79470364 original size:29 final size:28
Alignment explanation
Indices: 79470299--79470370 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
79470289 AAAATTGTAC
*
79470299 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
79470327 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
79470356 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79470371 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:79478088 original size:28 final size:28
Alignment explanation
Indices: 79478019--79478119 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
79478009 GACAAGATTG
* * * *
79478019 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
79478049 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
79478077 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
79478106 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
79478120 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:79478113 original size:29 final size:28
Alignment explanation
Indices: 79478048--79478119 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
79478038 AAAATTGTAC
*
79478048 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
79478076 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
79478105 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
79478120 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:79484389 original size:40 final size:40
Alignment explanation
Indices: 79484327--79484534 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
79484317 CATTGGAATG
* * * *
79484327 ATATCCGGGCTAAGGCCTGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
79484367 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * * * **
79484407 ATATTCGGGTTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
79484447 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
79484487 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
79484527 ATATCCGG
1 ATATCCGG
79484535 TTAAATTCCG
Statistics
Matches: 138, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
39 3 0.02
40 133 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:79486152 original size:93 final size:93
Alignment explanation
Indices: 79486040--79486211 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
79486030 GCCCATAAGT
* *
79486040 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79486105 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
79486133 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79486198 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
79486212 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:79486207 original size:46 final size:46
Alignment explanation
Indices: 79486032--79486207 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
79486022 TGTAACCCGC
* * *
79486032 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
79486078 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
79486128 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
79486171 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
79486208 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:79495175 original size:40 final size:40
Alignment explanation
Indices: 79495116--79495323 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 40
79495106 CATTGGAATG
* * *
79495116 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
79495156 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * **
79495196 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
79495236 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
79495276 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
79495316 ATATCCGG
1 ATATCCGG
79495324 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.02
40 136 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:79499098 original size:27 final size:27
Alignment explanation
Indices: 79499058--79499116 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
79499048 TTTTAGGTTC
* * *
79499058 ACACTGGCTGTCACATGGCCGTGTGCA
1 ACACAGGCTATCACATGGCCGTATGCA
*
79499085 ACACAGGCTATCACATGGCCGTATGCC
1 ACACAGGCTATCACATGGCCGTATGCA
79499112 ACACA
1 ACACA
79499117 TGATCGCTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.32, G:0.24, T:0.19
Consensus pattern (27 bp):
ACACAGGCTATCACATGGCCGTATGCA
Found at i:79502465 original size:16 final size:16
Alignment explanation
Indices: 79502444--79502474 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79502434 TTTCACTATT
*
79502444 ATGTATTTTTTATTTC
1 ATGTATTTTATATTTC
79502460 ATGTATTTTATATTT
1 ATGTATTTTATATTT
79502475 TGCATGCATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.03, G:0.06, T:0.68
Consensus pattern (16 bp):
ATGTATTTTATATTTC
Found at i:79505885 original size:80 final size:80
Alignment explanation
Indices: 79505733--79505901 Score: 202
Period size: 80 Copynumber: 2.1 Consensus size: 80
79505723 TCGAATGATG
* *
79505733 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
**
79505798 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * *
79505813 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGGCAT
*
79505876 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
79505893 TCC-GGTTAA
1 TCCGGGTTAA
79505902 ACTCCGAAGG
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
79 9 0.12
80 61 0.79
81 7 0.09
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:79505892 original size:40 final size:40
Alignment explanation
Indices: 79505734--79505878 Score: 188
Period size: 40 Copynumber: 3.6 Consensus size: 40
79505724 CGAATGATGT
* * *
79505734 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
*
79505774 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
79505813 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
79505854 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
79505879 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
39 2 0.02
40 80 0.87
41 10 0.11
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:79513978 original size:80 final size:80
Alignment explanation
Indices: 79513826--79513994 Score: 202
Period size: 80 Copynumber: 2.1 Consensus size: 80
79513816 TCGAATGATG
* *
79513826 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
**
79513891 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * *
79513906 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGGCAT
*
79513969 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
79513986 TCC-GGTTAA
1 TCCGGGTTAA
79513995 ACTCCGAAGG
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
79 9 0.12
80 61 0.79
81 7 0.09
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:79513985 original size:40 final size:40
Alignment explanation
Indices: 79513827--79513971 Score: 188
Period size: 40 Copynumber: 3.6 Consensus size: 40
79513817 CGAATGATGT
* * *
79513827 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
*
79513867 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
79513906 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
79513947 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
79513972 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
39 2 0.02
40 80 0.87
41 10 0.11
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:79515462 original size:12 final size:12
Alignment explanation
Indices: 79515445--79515495 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
79515435 ATTTTAGTAG
79515445 TTTAATATTAA-A
1 TTTAAT-TTAATA
79515457 TTTAATTTAATA
1 TTTAATTTAATA
79515469 TTT-ATCTTAATA
1 TTTAAT-TTAATA
*
79515481 GTATAATTTAATA
1 -TTTAATTTAATA
79515494 TT
1 TT
79515496 AAAGTGATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
11 6 0.18
12 17 0.52
13 8 0.24
14 2 0.06
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (12 bp):
TTTAATTTAATA
Found at i:79520430 original size:39 final size:39
Alignment explanation
Indices: 79520349--79520591 Score: 380
Period size: 39 Copynumber: 6.2 Consensus size: 39
79520339 TATGGTAACC
* * *
79520349 CGCACAAATGCCTTTGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
79520389 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
79520428 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
79520467 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
79520506 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
79520545 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
79520584 CGCA-AATT
1 CGCACAATT
79520592 CATACACATC
Statistics
Matches: 187, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
38 4 0.02
39 167 0.89
40 16 0.09
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:79524896 original size:31 final size:31
Alignment explanation
Indices: 79524858--79524921 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
79524848 AATAAATAAA
79524858 GTTAATTTCACATTTCACTATTATGTCTTTT
1 GTTAATTTCACATTTCACTATTATGTCTTTT
79524889 GTTAATTTCACATTTCACTATTATGTCTTTT
1 GTTAATTTCACATTTCACTATTATGTCTTTT
79524920 GT
1 GT
79524922 ATTTTCTATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.22, C:0.16, G:0.08, T:0.55
Consensus pattern (31 bp):
GTTAATTTCACATTTCACTATTATGTCTTTT
Found at i:79526232 original size:19 final size:20
Alignment explanation
Indices: 79526195--79526232 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
79526185 GTAATTGAAC
*
79526195 TTTAAAATTGGACTTGAGAT
1 TTTAAAATTGGACTCGAGAT
*
79526215 TTTAAATTTGG-CTCGAGA
1 TTTAAAATTGGACTCGAGA
79526233 GTCCAAAATC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (20 bp):
TTTAAAATTGGACTCGAGAT
Found at i:79526572 original size:19 final size:19
Alignment explanation
Indices: 79526548--79526615 Score: 55
Period size: 19 Copynumber: 3.4 Consensus size: 19
79526538 ATTCCAAAAA
*
79526548 TAATATTATTTTAATAGTT
1 TAATATTATTTTAATAATT
* * *
79526567 TAATATTAAATGTAACTTATTT
1 TAATATT-ATTTTAA--TAATT
* *
79526589 TAATAGTATTTTATTAATT
1 TAATATTATTTTAATAATT
79526608 TAATATTA
1 TAATATTA
79526616 AAATGATTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
19 18 0.49
20 5 0.14
21 4 0.11
22 10 0.27
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.54
Consensus pattern (19 bp):
TAATATTATTTTAATAATT
Found at i:79529460 original size:12 final size:13
Alignment explanation
Indices: 79529441--79529470 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
79529431 TTTATTATAA
*
79529441 GAAAAAAAAATTT
1 GAAAAAAAGATTT
79529454 GAAAAAAAGATTT
1 GAAAAAAAGATTT
79529467 GAAA
1 GAAA
79529471 TATAATTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.13, T:0.20
Consensus pattern (13 bp):
GAAAAAAAGATTT
Found at i:79531107 original size:50 final size:50
Alignment explanation
Indices: 79531047--79531187 Score: 162
Period size: 50 Copynumber: 2.8 Consensus size: 50
79531037 TACTTAAATA
* *
79531047 TAATTAACATAT-AAGGTGCATAAATGCATGGC-TTAATTAAAATGCAAACT
1 TAATTAACATATGAA-GTGCAT-AATGCATGACATAAATTAAAATGCAAACT
* * * *
79531097 TATTTAACATATGAATTTCATAATGCATGACATAAATTAAGATGCAAACT
1 TAATTAACATATGAAGTGCATAATGCATGACATAAATTAAAATGCAAACT
* * *
79531147 TAATTAACATATGAATTACATAATACATGACAT-AATTAAAA
1 TAATTAACATATGAAGTGCATAATGCATGACATAAATTAAAA
79531188 CACAATTAAC
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
49 16 0.20
50 61 0.77
51 2 0.03
ACGTcount: A:0.47, C:0.11, G:0.10, T:0.32
Consensus pattern (50 bp):
TAATTAACATATGAAGTGCATAATGCATGACATAAATTAAAATGCAAACT
Found at i:79531284 original size:32 final size:33
Alignment explanation
Indices: 79531220--79531302 Score: 109
Period size: 32 Copynumber: 2.6 Consensus size: 33
79531210 TTTATGCATG
*
79531220 ACATAATT-AA-ATGCAAAACACATAATGTAAA
1 ACATAATTAAAGATGCAAAACACATAATGCAAA
* *
79531251 ACATAATTAAAGATGC-TAACATATAATGCAAA
1 ACATAATTAAAGATGCAAAACACATAATGCAAA
79531283 ACATAATTTAAAGATGCAAA
1 ACATAA-TTAAAGATGCAAA
79531303 CTTATGAAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
31 8 0.18
32 21 0.48
33 14 0.32
34 1 0.02
ACGTcount: A:0.55, C:0.12, G:0.08, T:0.24
Consensus pattern (33 bp):
ACATAATTAAAGATGCAAAACACATAATGCAAA
Found at i:79531355 original size:116 final size:116
Alignment explanation
Indices: 79531207--79531438 Score: 437
Period size: 116 Copynumber: 2.0 Consensus size: 116
79531197 CATATGAGAT
79531207 ACTTTTATGCATGACATAATTAAATGCAAAACACATAATGTAAAACATAATTAAAGATGCTAACA
1 ACTTTTATGCATGACATAATTAAATGCAAAACACATAATGTAAAACATAATTAAAGATGCTAACA
79531272 TATAATGCAAAACATAATTTAAAGATGCAAACTTATGAAACTGAAATAAAA
66 TATAATGCAAAACATAATTTAAAGATGCAAACTTATGAAACTGAAATAAAA
* * *
79531323 ACTTTTATGCATGACTTAATTAAATGCAAAACACATCATGTAAAACATAATTAAATATGCTAACA
1 ACTTTTATGCATGACATAATTAAATGCAAAACACATAATGTAAAACATAATTAAAGATGCTAACA
79531388 TATAATGCAAAACATAATTTAAAGATGCAAACTTATGAAACTGAAATAAAA
66 TATAATGCAAAACATAATTTAAAGATGCAAACTTATGAAACTGAAATAAAA
79531439 CTTAATTTAA
Statistics
Matches: 113, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
116 113 1.00
ACGTcount: A:0.51, C:0.12, G:0.09, T:0.28
Consensus pattern (116 bp):
ACTTTTATGCATGACATAATTAAATGCAAAACACATAATGTAAAACATAATTAAAGATGCTAACA
TATAATGCAAAACATAATTTAAAGATGCAAACTTATGAAACTGAAATAAAA
Found at i:79532311 original size:13 final size:12
Alignment explanation
Indices: 79532281--79532323 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 12
79532271 ATACTTATAT
79532281 AATAAATTATTC
1 AATAAATTATTC
*
79532293 ATATAATTTACTTC
1 A-ATAAATTA-TTC
79532307 AATAAAATTATTC
1 AAT-AAATTATTC
79532320 AATA
1 AATA
79532324 TTAAAATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
12 2 0.08
13 15 0.58
14 9 0.35
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (12 bp):
AATAAATTATTC
Found at i:79543102 original size:40 final size:39
Alignment explanation
Indices: 79543017--79543202 Score: 187
Period size: 40 Copynumber: 4.7 Consensus size: 39
79543007 TTCGAATGAT
* * * *
79543017 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT
1 ATCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAA
*
79543057 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAA
* * *
79543097 TTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
* * *
79543136 ATCTGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATA
1 ATCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-A
* *
79543177 A-CTGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGCTAAGT-CCGAAGGCATTTG
79543203 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 34 0.27
40 81 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:79543224 original size:79 final size:79
Alignment explanation
Indices: 79543071--79543235 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
79543061 GGACTAAGAT
* **
79543071 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
* *
79543136 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* * * *
79543150 CCGAAGGCATTTGTGTGAGTTACT-ATAACTGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
79543213 TATATC-CGGTTAAATT
63 TAAATCTCGGTTAAATC
79543229 CCGAAGG
1 CCGAAGG
79543236 TACGTGATTC
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.65
80 23 0.32
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCTCGGTTAAATC
Found at i:79545739 original size:35 final size:35
Alignment explanation
Indices: 79545693--79545778 Score: 120
Period size: 35 Copynumber: 2.5 Consensus size: 35
79545683 TGATTTGTAC
* *
79545693 ATCTGTATCTGTATCTG-ATATGGGCTTAGGCCCGA
1 ATCTGTATCTGTATCTGTA-ATGGGCTTAAGCCCAA
*
79545728 ATCTGTATCTGTATTTGTAATGGGCTTAAGCCCAA
1 ATCTGTATCTGTATCTGTAATGGGCTTAAGCCCAA
*
79545763 ATTTGTATCTGTATCT
1 ATCTGTATCTGTATCT
79545779 AACTGAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
35 44 0.98
36 1 0.02
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (35 bp):
ATCTGTATCTGTATCTGTAATGGGCTTAAGCCCAA
Found at i:79549969 original size:32 final size:32
Alignment explanation
Indices: 79549928--79549991 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
79549918 CTTCTCGTTG
*
79549928 AATTTCCTCAAGTTCTTGAATATGTAATTTTC
1 AATTTCCTCAAGTTCCTGAATATGTAATTTTC
*
79549960 AATTTCCTCACGTTCCTGAATATGTAATTTTC
1 AATTTCCTCAAGTTCCTGAATATGTAATTTTC
79549992 TATACTTACC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.27, C:0.19, G:0.09, T:0.45
Consensus pattern (32 bp):
AATTTCCTCAAGTTCCTGAATATGTAATTTTC
Found at i:79551876 original size:19 final size:19
Alignment explanation
Indices: 79551846--79551903 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
79551836 ATTTTAAAAT
79551846 CAAGTGCAAATGATTTTAAC
1 CAAGT-CAAATGATTTTAAC
* *
79551866 CAAGTCAAATGATTTCAAT
1 CAAGTCAAATGATTTTAAC
* *
79551885 CAAGTTAAAATCATTTTAA
1 CAAG-TCAAATGATTTTAA
79551904 AATGATTTTC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (19 bp):
CAAGTCAAATGATTTTAAC
Found at i:79562571 original size:20 final size:20
Alignment explanation
Indices: 79562546--79562597 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
79562536 AATCAAGTGC
79562546 AAATGATTTTAACCAAATCA
1 AAATGATTTTAACCAAATCA
* * * *
79562566 AAATGATTTAAATCAAGTTA
1 AAATGATTTTAACCAAATCA
*
79562586 AAATCATTTTAA
1 AAATGATTTTAA
79562598 AATGATTTTG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.35
Consensus pattern (20 bp):
AAATGATTTTAACCAAATCA
Found at i:79564643 original size:20 final size:21
Alignment explanation
Indices: 79564618--79564657 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
79564608 CACCTGAAGT
* *
79564618 AGGGC-ACACGCCCTTGTGGA
1 AGGGCAACACACCCGTGTGGA
79564638 AGGGCAACACACCCGTGTGG
1 AGGGCAACACACCCGTGTGG
79564658 CCATTATGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.30, G:0.35, T:0.12
Consensus pattern (21 bp):
AGGGCAACACACCCGTGTGGA
Found at i:79565958 original size:48 final size:48
Alignment explanation
Indices: 79565854--79566212 Score: 185
Period size: 48 Copynumber: 7.6 Consensus size: 48
79565844 AAATGCTGAC
* * *
79565854 GCCATGTCCCAGACATGGTCTTACACTAGCTAGCATAT-TAAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTAGCTATCATATATCAGGTCGAT
* * * *
79565902 GTCGTGTCCCAGACAGGTCTTACACTAACTTTCATATATCTAGGT-GAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTATCATATATC-AGGTCGAT
* * * * *
79565950 GCCATGTCCCAGACAGGTCTTACATTGGCTCTCATCTATCGGTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTATCATATATCAG-GTCGAT
* * * ** * *
79565999 GCCATGTTCCAGACAGGTCTTACA-TTGAC-A-CACA-AAAAGCT-GAC
1 GCCATGTCCCAGACAGGTCTTACACTAG-CTATCATATATCAGGTCGAT
* * *
79566043 GCCATGTCCCAGACAGGTCTTACACTAGCT-T-GTATATCCCGATGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTATCATATAT--C-AGGTCGAT
* * * * * * * *
79566092 G-TATGTCCTAGACATGTCTTACACTAGCTCTC--CTCTCAATGTCAAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTATCATATATC-AGGTCGAT
** * *
79566138 G-CATGTCCCAGACACCTCTTACACTAGC-ACTCATGATGT--GGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTA-TCAT-ATATCAGGTCGAT
* *
79566184 G-CATGTCCCAGATATGTCTTACACTAGCT
1 GCCATGTCCCAGACAGGTCTTACACTAGCT
79566213 CACATACCAC
Statistics
Matches: 235, Mismatches: 56, Indels: 41
0.71 0.17 0.12
Matches are distributed among these distances:
44 27 0.11
45 4 0.02
46 64 0.27
47 22 0.09
48 82 0.35
49 36 0.15
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCATGTCCCAGACAGGTCTTACACTAGCTATCATATATCAGGTCGAT
Found at i:79572401 original size:20 final size:21
Alignment explanation
Indices: 79572376--79572415 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
79572366 CACTTGAAGC
*
79572376 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCCTGTGGA
79572396 AGGGCAACACGCCCCTGTGG
1 AGGGCAACACGCCCCTGTGG
79572416 CCATTATGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.33, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCCTGTGGA
Found at i:79573706 original size:48 final size:48
Alignment explanation
Indices: 79573649--79573867 Score: 155
Period size: 48 Copynumber: 4.6 Consensus size: 48
79573639 CATTAAAATC
* *
79573649 GATGTCATGTCCCAGACAAGTCTTACACTAACTTTCATATATCGAGGT
1 GATGCCATATCCCAGACAAGTCTTACACTAACTTTCATATATCGAGGT
* * ** *
79573697 GATGCCATGTCCCAGACAAGTCTTACACTAGCACTCATCTATCG-GTGT
1 GATGCCATATCCCAGACAAGTCTTACACTAACTTTCATATATCGAG-GT
* * * * * * *
79573745 CGATACCATATCCCAGACAGGTCTTACACTGAC--ACACA-A-CAAGCT
1 -GATGCCATATCCCAGACAAGTCTTACACTAACTTTCATATATCGAGGT
* * * * *
79573790 GATGCCATATCCCAGACAGGCCTTACACTAGCTTGT-ATATCTCGAGGCC
1 GATGCCATATCCCAGACAAGTCTTACACTAACTT-TCATATATCGAGG-T
* * *
79573839 GATG-CATTTCCCAGACATGTGTTACACTA
1 GATGCCATATCCCAGACAAGTCTTACACTA
79573868 GCTCTCATCT
Statistics
Matches: 133, Mismatches: 29, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
44 28 0.21
45 2 0.02
46 4 0.03
47 3 0.02
48 65 0.49
49 31 0.23
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (48 bp):
GATGCCATATCCCAGACAAGTCTTACACTAACTTTCATATATCGAGGT
Found at i:79573897 original size:46 final size:46
Alignment explanation
Indices: 79573835--79573963 Score: 136
Period size: 46 Copynumber: 2.8 Consensus size: 46
79573825 TATATCTCGA
* * * *
79573835 GGCCGATGCATTTCCCAGACATGTGTTACACTAGCTCTCATC-TCAAT
1 GGCCAATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCAT--AT
* * * * *
79573882 -GCCAATGCATGTCCCAGAAACGTCTTACACTGGCACTCATGATGT
1 GGCCAATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCATAT
*
79573927 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTC
1 GGCCAATGCATGTCCCAGACATGTCTTACACTGGCTC
79573964 ACATACCACC
Statistics
Matches: 67, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
45 1 0.01
46 65 0.97
47 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (46 bp):
GGCCAATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCATAT
Found at i:79582303 original size:27 final size:25
Alignment explanation
Indices: 79582262--79582334 Score: 83
Period size: 27 Copynumber: 2.8 Consensus size: 25
79582252 TCTTATTCCA
* * *
79582262 ATTTTACTTCAGTAAAATTTTGACG
1 ATTTTCCTTCGGTAAAATTTTGAAG
79582287 ATTTTACCCTTCGGTAAAATTTTGAAG
1 ATTTT--CCTTCGGTAAAATTTTGAAG
*
79582314 ATTTTCCTCCTGGTAAAATTT
1 ATTTTCCTTC-GGTAAAATTT
79582335 CGAGAAAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
25 9 0.22
26 10 0.24
27 22 0.54
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (25 bp):
ATTTTCCTTCGGTAAAATTTTGAAG
Found at i:79582493 original size:12 final size:12
Alignment explanation
Indices: 79582476--79582510 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
79582466 TAGGATTGCA
*
79582476 AATTTCAATTTC
1 AATTTCCATTTC
79582488 AATTTCCATTTC
1 AATTTCCATTTC
*
79582500 CATTTCCATTT
1 AATTTCCATTT
79582511 TTGGAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.26, C:0.23, G:0.00, T:0.51
Consensus pattern (12 bp):
AATTTCCATTTC
Found at i:79584722 original size:73 final size:71
Alignment explanation
Indices: 79584605--79584770 Score: 314
Period size: 73 Copynumber: 2.3 Consensus size: 71
79584595 CGATTTGTCT
79584605 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
79584670 CTTTCA
66 CTTTCA
79584676 CGTAGCTCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTT
1 CGTAG--CTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTT
79584741 ATCTTTCA
64 ATCTTTCA
79584749 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
79584771 GATACATTTC
Statistics
Matches: 93, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
71 22 0.24
73 71 0.76
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:79587835 original size:33 final size:33
Alignment explanation
Indices: 79587798--79587872 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 33
79587788 CCTTGCCATA
* *
79587798 GTCTTACACTC-GTAATGCCATAACCTAGTTATG
1 GTCTTACACTCAG-AATGCCATAACCCAGCTATG
* *
79587831 GTCTTATCA-TCAGGATGCCATAGCCCAGCTATG
1 GTCTTA-CACTCAGAATGCCATAACCCAGCTATG
79587864 GTCTTACAC
1 GTCTTACAC
79587873 GTATATACAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
32 2 0.06
33 30 0.86
34 3 0.09
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (33 bp):
GTCTTACACTCAGAATGCCATAACCCAGCTATG
Found at i:79592434 original size:14 final size:14
Alignment explanation
Indices: 79592415--79592441 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
79592405 GCTATCGTTT
79592415 TACTATTTTGTTGC
1 TACTATTTTGTTGC
79592429 TACTATTTTGTTG
1 TACTATTTTGTTG
79592442 TTATTGTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.11, G:0.15, T:0.59
Consensus pattern (14 bp):
TACTATTTTGTTGC
Found at i:79597354 original size:18 final size:18
Alignment explanation
Indices: 79597331--79597365 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
79597321 AGTTGAAATC
*
79597331 CTTTTATTTTTTTTCTTT
1 CTTTTATTTTTCTTCTTT
79597349 CTTTTATTTTTCTTCTT
1 CTTTTATTTTTCTTCTT
79597366 CGTCCGTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.80
Consensus pattern (18 bp):
CTTTTATTTTTCTTCTTT
Found at i:79602860 original size:11 final size:11
Alignment explanation
Indices: 79602846--79602878 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
79602836 AAATTTATAC
79602846 ACAATTATAAA
1 ACAATTATAAA
79602857 ACAATTATAAA
1 ACAATTATAAA
*
79602868 A-TATTATAAA
1 ACAATTATAAA
79602878 A
1 A
79602879 ATTTTAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (11 bp):
ACAATTATAAA
Found at i:79603090 original size:21 final size:21
Alignment explanation
Indices: 79603061--79603101 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
79603051 TAAGATAAAT
79603061 AAATATTTATC-TTACTATTTA
1 AAATATTTATCATTA-TATTTA
*
79603082 AAATTTTTATCATTATATTT
1 AAATATTTATCATTATATTT
79603102 TTTAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (21 bp):
AAATATTTATCATTATATTTA
Found at i:79603388 original size:4 final size:4
Alignment explanation
Indices: 79603379--79603409 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
79603369 GCTAAGCATA
79603379 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
79603410 AATAGTAGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:79610991 original size:22 final size:23
Alignment explanation
Indices: 79610966--79611008 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
79610956 CAATGCCCTC
79610966 TTTTATTATTCA-ATTTATTGGA
1 TTTTATTATTCATATTTATTGGA
*
79610988 TTTTATTATTCATTTTTATTG
1 TTTTATTATTCATATTTATTG
79611009 AAAATAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.23, C:0.05, G:0.07, T:0.65
Consensus pattern (23 bp):
TTTTATTATTCATATTTATTGGA
Found at i:79614612 original size:8 final size:8
Alignment explanation
Indices: 79614601--79614646 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
79614591 TACAATTTAA
79614601 AAAATATT
1 AAAATATT
79614609 AAAA-ATTT
1 AAAATA-TT
79614617 AAAAT-TT
1 AAAATATT
*
79614624 AAAATTTT
1 AAAATATT
*
79614632 AAAATTTT
1 AAAATATT
79614640 AAAATAT
1 AAAATAT
79614647 ATTTTATTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
7 8 0.24
8 26 0.76
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
AAAATATT
Found at i:79614622 original size:7 final size:7
Alignment explanation
Indices: 79614610--79614644 Score: 52
Period size: 8 Copynumber: 4.7 Consensus size: 7
79614600 AAAAATATTA
79614610 AAAATTT
1 AAAATTT
79614617 AAAATTT
1 AAAATTT
79614624 AAAATTTT
1 AAAA-TTT
79614632 AAAATTTT
1 AAAA-TTT
79614640 AAAAT
1 AAAAT
79614645 ATATTTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 12 0.44
8 15 0.56
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
AAAATTT
Found at i:79614633 original size:23 final size:23
Alignment explanation
Indices: 79614601--79614644 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
79614591 TACAATTTAA
79614601 AAAATATTAAAAATTTAAAATTT
1 AAAATATTAAAAATTTAAAATTT
* *
79614624 AAAATTTTAAAATTTTAAAAT
1 AAAATATTAAAAATTTAAAAT
79614645 ATATTTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
AAAATATTAAAAATTTAAAATTT
Found at i:79620174 original size:33 final size:33
Alignment explanation
Indices: 79620103--79620175 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 33
79620093 GTTAAATGTT
*
79620103 AGTGACAATGTTTTGCTAAAAATGAAAATATAC
1 AGTGATAATGTTTTGCTAAAAATGAAAATATAC
*
79620136 AGTGATAATGTTTTGCTAAAAATGAAAATATGC
1 AGTGATAATGTTTTGCTAAAAATGAAAATATAC
79620169 AGTGATA
1 AGTGATA
79620176 GTGCAAGGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.44, C:0.07, G:0.18, T:0.32
Consensus pattern (33 bp):
AGTGATAATGTTTTGCTAAAAATGAAAATATAC
Found at i:79620566 original size:15 final size:16
Alignment explanation
Indices: 79620525--79620569 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
79620515 ATTATCTTAA
79620525 ATTATGAATATGTGTGT
1 ATTATG-ATATGTGTGT
* *
79620542 ATTGTGATATGTGTTT
1 ATTATGATATGTGTGT
79620558 A-TATGATATGTG
1 ATTATGATATGTG
79620570 ACCATTTTGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 10 0.40
16 10 0.40
17 5 0.20
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (16 bp):
ATTATGATATGTGTGT
Found at i:79620645 original size:39 final size:39
Alignment explanation
Indices: 79620602--79620739 Score: 240
Period size: 39 Copynumber: 3.5 Consensus size: 39
79620592 AACATGTTTT
*
79620602 TGAGTATTGTGATATATACTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
79620641 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
*
79620680 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* *
79620719 TGTGTAATGTGATATATGCTT
1 TGAGTATTGTGATATATGCTT
79620740 AAAAGTGAAT
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 95 1.00
ACGTcount: A:0.29, C:0.03, G:0.22, T:0.46
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
Found at i:79620653 original size:17 final size:17
Alignment explanation
Indices: 79620631--79620697 Score: 57
Period size: 17 Copynumber: 3.7 Consensus size: 17
79620621 TTGAATGTTA
79620631 TGTGATTATATGAGTAT
1 TGTGATTATATGAGTAT
*
79620648 TGTGATATATGCTTGAATGT-T
1 TGTGAT-TAT--ATG-A-GTAT
79620669 ATGTGATTATATGAGTAT
1 -TGTGATTATATGAGTAT
79620687 TGTGA-TATATG
1 TGTGATTATATG
79620698 CTTAAATGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 15
0.71 0.03 0.26
Matches are distributed among these distances:
16 6 0.15
17 13 0.32
18 5 0.12
19 2 0.05
20 2 0.05
21 5 0.12
22 8 0.20
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.46
Consensus pattern (17 bp):
TGTGATTATATGAGTAT
Found at i:79620764 original size:39 final size:38
Alignment explanation
Indices: 79620648--79620757 Score: 94
Period size: 39 Copynumber: 2.8 Consensus size: 38
79620638 ATATGAGTAT
* * * * * * *
79620648 TGTGATATATGCTTGAATGTTATGTGATTATATGAGTAT
1 TGTGATATATGCTTAAAAGTAATATGATTACA-GTGTAA
* * * *
79620687 TGTGATATATGCTTAAATGTTATGTGATTATATGTGTAA
1 TGTGATATATGCTTAAAAGTAATATGATTACA-GTGTAA
79620726 TGTGATATATGCTTAAAAGTGAATATGATTAC
1 TGTGATATATGCTTAAAAGT-AATATGATTAC
79620758 CATGTAAAAG
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 55 0.87
40 8 0.13
ACGTcount: A:0.32, C:0.04, G:0.21, T:0.44
Consensus pattern (38 bp):
TGTGATATATGCTTAAAAGTAATATGATTACAGTGTAA
Found at i:79621421 original size:12 final size:12
Alignment explanation
Indices: 79621404--79621428 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79621394 CGATACTCAA
79621404 GGTAATTTTATC
1 GGTAATTTTATC
79621416 GGTAATTTTATC
1 GGTAATTTTATC
79621428 G
1 G
79621429 ATACTTTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (12 bp):
GGTAATTTTATC
Done.