Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 259 of 410
Found at i:79942466 original size:9 final size:9
Alignment explanation
Indices: 79942454--79942508 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
79942444 TAAGAGCTAT
*
79942454 ATGATTTAC
1 ATGAATTAC
79942463 ATGAATT--
1 ATGAATTAC
79942470 AT-AAGTTAC
1 ATGAA-TTAC
*
79942479 ATGATTTAC
1 ATGAATTAC
*
79942488 ATGAATTAT
1 ATGAATTAC
79942497 ATGAATTAC
1 ATGAATTAC
79942506 ATG
1 ATG
79942509 GATATTATGA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
6 2 0.05
7 4 0.11
9 30 0.81
10 1 0.03
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (9 bp):
ATGAATTAC
Found at i:79949896 original size:23 final size:23
Alignment explanation
Indices: 79949868--79949948 Score: 85
Period size: 23 Copynumber: 3.6 Consensus size: 23
79949858 TAGCTCATAT
79949868 GAGCTTACCGTTTCAGCTCTTTG
1 GAGCTTACCGTTTCAGCTCTTTG
* * *
79949891 GGGCTTATCGTTTCAGCT-TTACG
1 GAGCTTACCGTTTCAGCTCTT-TG
* *
79949914 GAGCTTACCG-TTCATCTCTTTA
1 GAGCTTACCGTTTCAGCTCTTTG
*
79949936 GAGCTTATCGTTT
1 GAGCTTACCGTTT
79949949 ATCAGCTCAG
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
22 17 0.37
23 29 0.63
ACGTcount: A:0.15, C:0.23, G:0.21, T:0.41
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCTTTG
Found at i:79950137 original size:9 final size:9
Alignment explanation
Indices: 79950125--79950179 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
79950115 TAAGAGCTAT
*
79950125 ATGATTTAC
1 ATGAATTAC
79950134 ATGAATT--
1 ATGAATTAC
79950141 AT-AAGTTAC
1 ATGAA-TTAC
*
79950150 ATGATTTAC
1 ATGAATTAC
*
79950159 ATGAATTAT
1 ATGAATTAC
79950168 ATGAATTAC
1 ATGAATTAC
79950177 ATG
1 ATG
79950180 GATATTATGA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
6 2 0.05
7 4 0.11
9 30 0.81
10 1 0.03
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (9 bp):
ATGAATTAC
Found at i:79955339 original size:47 final size:49
Alignment explanation
Indices: 79955265--79955495 Score: 250
Period size: 47 Copynumber: 4.9 Consensus size: 49
79955255 CGTGGGTAAG
79955265 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTC-
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCA
** * *
79955312 ATGTTGATGCCATGTACCAGACATGGTCTTACACTGACT-ATCATCTC-
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCA
* * * * *
79955359 GTAGCTGATG-CATGTCCCAGATAT-GTCTTACACTGGCTTA-CGTCTCA
1 AT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCA
* * * * *
79955406 AGGCCGATG-CATGTCCCAAACAT-ATCTTACACTAGCTC-TCGTCTCA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCA
79955452 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCAT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAT
79955496 AATGTGGCCA
Statistics
Matches: 154, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
46 65 0.42
47 67 0.44
48 22 0.14
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (49 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCA
Found at i:79955513 original size:47 final size:46
Alignment explanation
Indices: 79955267--79955537 Score: 161
Period size: 47 Copynumber: 5.8 Consensus size: 46
79955257 TGGGTAAGAT
*
79955267 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCATGT-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTC-TCA--TAATGTG
* * * * * *
79955316 --TGATGCCATGTACCAGACATGGTCTTACACTGACTATCAT-CTCGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAAT-GTG
* *
79955362 GCTGATGCATGTCCCAGATATGTCTTACACTGGCTTACGTC-TCAA---G
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-T-C-TCAT-AATGTG
* * * *
79955408 GCCGATGCATGTCCCAAACATATCTTACACTAGCTCTCGTCTCAA--T-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTC--AT-AATGTG
79955454 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGTG
* * *
79955502 GCCAATGCATGTCCCAGACATGTATTACACTAGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTC
79955538 ACAAACAAAT
Statistics
Matches: 180, Mismatches: 23, Indels: 41
0.74 0.09 0.17
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 6 0.03
46 67 0.37
47 74 0.41
48 27 0.15
49 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTG
Found at i:79955530 original size:140 final size:141
Alignment explanation
Indices: 79955267--79955532 Score: 342
Period size: 140 Copynumber: 1.9 Consensus size: 141
79955257 TGGGTAAGAT
* * * **
79955267 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCATGTTGATGCCATGTACCAG
1 GCCGATGCCATGTCCCAAACATGATCTTACACTAGCTCATATCTCATGCCGATGCCATGTACCAG
* ** * *
79955332 ACATGGTCTTACACTGACTATCATCTCGTAGCTGATGCATGTCCCAGATATGTCTTACACTGGCT
66 ACATGGTCTTACACTGACTATCATATCGTAGCCAATGCATGTCCCAGACATGTATTACACTGGCT
79955397 TACGTCTCAAG
131 TACGTCTCAAG
* *
79955408 GCCGATG-CATGTCCCAAACAT-ATCTTACACTAGCTC-TCGTCTCAATGCCGATGCCATGTCCC
1 GCCGATGCCATGTCCCAAACATGATCTTACACTAGCTCAT-ATCTC-ATGCCGATGCCATGTACC
* * *
79955470 AGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCAATGCATGTCCCAGACATGTATTACACT
64 AGACATGGTCTTACACTGACTATCAT-ATCGTAGCCAATGCATGTCCCAGACATGTATTACACT
79955533 AGCTCACAAA
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
138 1 0.01
139 17 0.16
140 81 0.76
141 8 0.07
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAAACATGATCTTACACTAGCTCATATCTCATGCCGATGCCATGTACCAG
ACATGGTCTTACACTGACTATCATATCGTAGCCAATGCATGTCCCAGACATGTATTACACTGGCT
TACGTCTCAAG
Found at i:79957712 original size:37 final size:36
Alignment explanation
Indices: 79957627--79957724 Score: 115
Period size: 37 Copynumber: 2.6 Consensus size: 36
79957617 TGATTTGTCT
79957627 TAAACTAAGACACATTAAAACGACTATTTAATATGTAC
1 TAAACTAAGACACATTAAAAC--CTATTTAATATGTAC
** * * *
79957665 TTCACTAAGACATATTAAACACCTATTTAATTTTTAC
1 TAAACTAAGACACATTAAA-ACCTATTTAATATGTAC
*
79957702 TAAACGAAGACACATTAAAACCT
1 TAAACTAAGACACATTAAAACCT
79957725 TAATTAAAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
36 4 0.08
37 28 0.56
38 16 0.32
39 2 0.04
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.31
Consensus pattern (36 bp):
TAAACTAAGACACATTAAAACCTATTTAATATGTAC
Found at i:79964228 original size:27 final size:28
Alignment explanation
Indices: 79964179--79964247 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
79964169 ATAGTGAGTC
*
79964179 CGCACAC-TAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
79964205 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
79964233 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
79964248 GTACAAGTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
26 7 0.18
27 13 0.33
28 19 0.49
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:79972178 original size:28 final size:27
Alignment explanation
Indices: 79972115--79972184 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
79972105 ATAGTGAGTC
*
79972115 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
79972142 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
79972170 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
79972185 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:79984528 original size:40 final size:40
Alignment explanation
Indices: 79984462--79984628 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
79984452 AAATTGAATG
* * *
79984462 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
79984501 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
79984541 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
79984581 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
79984621 ATATCCGG
1 ATATCCGG
79984629 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:79992532 original size:40 final size:40
Alignment explanation
Indices: 79992466--79992632 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
79992456 AAATTGAATG
* * *
79992466 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
79992505 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
79992545 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
79992585 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
79992625 ATATCCGG
1 ATATCCGG
79992633 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:80001672 original size:40 final size:40
Alignment explanation
Indices: 80001570--80001721 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
80001560 AAATTGAATG
* * * * *
80001570 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* ***
80001610 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* *
80001650 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* * *
80001690 CTAGCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
80001722 ACGGGATTAT
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
39 3 0.03
40 88 0.95
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:80010072 original size:14 final size:15
Alignment explanation
Indices: 80010055--80010097 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 15
80010045 TAAAATTAAA
80010055 AATTGAGGATTGA-T
1 AATTGAGGATTGAGT
*
80010069 AATTTAGGATTGAGT
1 AATTGAGGATTGAGT
*
80010084 -ATTGAGTATTGAGT
1 AATTGAGGATTGAGT
80010098 TGAAAAGAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 24 0.96
15 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.28, T:0.40
Consensus pattern (15 bp):
AATTGAGGATTGAGT
Found at i:80010474 original size:19 final size:19
Alignment explanation
Indices: 80010413--80010474 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
80010403 TTTGGGTTGT
80010413 TTTTTATTAT-TTTTATAA
1 TTTTTATTATATTTTATAA
80010431 TATTTTATTTATATTTTA-ACA
1 T-TTTTA-TTATATTTTATA-A
* *
80010452 -TTTTATAATATTTTATGA
1 TTTTTATTATATTTTATAA
80010470 TTTTT
1 TTTTT
80010475 TAGTTTGTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
18 11 0.31
19 14 0.39
20 5 0.14
21 6 0.17
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (19 bp):
TTTTTATTATATTTTATAA
Found at i:80010476 original size:10 final size:10
Alignment explanation
Indices: 80010414--80010467 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
80010404 TTGGGTTGTT
*
80010414 TTTTATTAT-
1 TTTTATAATA
80010423 TTTTATAATA
1 TTTTATAATA
*
80010433 TTTTAT-TTA
1 TTTTATAATA
*
80010442 TATTT-TAACA
1 T-TTTATAATA
80010452 TTTTATAATA
1 TTTTATAATA
80010462 TTTTAT
1 TTTTAT
80010468 GATTTTTTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
9 15 0.42
10 21 0.58
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTTATAATA
Found at i:80013519 original size:13 final size:13
Alignment explanation
Indices: 80013503--80013549 Score: 87
Period size: 13 Copynumber: 3.7 Consensus size: 13
80013493 AAAATAAGTA
80013503 TATTAAATTCAAT
1 TATTAAATTCAAT
80013516 TATTAAATTCAAT
1 TATTAAATTCAAT
80013529 TATTAAATTCAAT
1 TATTAAATTCAAT
80013542 TA-TAAATT
1 TATTAAATT
80013550 TTAATAATCG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 6 0.18
13 28 0.82
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (13 bp):
TATTAAATTCAAT
Found at i:80014925 original size:25 final size:25
Alignment explanation
Indices: 80014897--80014947 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
80014887 TTTCTTATAA
**
80014897 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
80014922 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
80014947 A
1 A
80014948 TTTTCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAGATTAGG
Found at i:80014946 original size:12 final size:12
Alignment explanation
Indices: 80014900--80014947 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
80014890 CTTATAAACT
80014900 TTAAATTAGGAA
1 TTAAATTAGGAA
** *
80014912 TTCTATTAGGACT
1 TTAAATTAGGA-A
80014925 TTAAATTAGGAA
1 TTAAATTAGGAA
*
80014937 TTAGATTAGGA
1 TTAAATTAGGA
80014948 TTTTCCTTTG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38
Consensus pattern (12 bp):
TTAAATTAGGAA
Found at i:80019601 original size:25 final size:25
Alignment explanation
Indices: 80019567--80019617 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
80019557 TTCCTTATAA
**
80019567 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
80019592 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
80019617 A
1 A
80019618 TTTTCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAGATTAGG
Found at i:80019616 original size:12 final size:12
Alignment explanation
Indices: 80019570--80019617 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
80019560 CTTATAAACT
80019570 TTAAATTAGGAA
1 TTAAATTAGGAA
** *
80019582 TTCTATTAGGACT
1 TTAAATTAGGA-A
80019595 TTAAATTAGGAA
1 TTAAATTAGGAA
*
80019607 TTAGATTAGGA
1 TTAAATTAGGA
80019618 TTTTCCTTTG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38
Consensus pattern (12 bp):
TTAAATTAGGAA
Found at i:80027037 original size:40 final size:40
Alignment explanation
Indices: 80026983--80027203 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
80026973 TATTCGGATG
*
80026983 ATATCC-GGCTAAGTCCCTAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
80027022 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* *
80027065 ATA-CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
80027104 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
80027144 ATATCCGGGCTAAGACCCGAA-GCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
80027183 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
80027204 ATACTTGGGT
Statistics
Matches: 161, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 12 0.07
39 33 0.20
40 78 0.48
41 1 0.01
42 28 0.17
43 9 0.06
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:80027126 original size:82 final size:80
Alignment explanation
Indices: 80026983--80027203 Score: 283
Period size: 82 Copynumber: 2.8 Consensus size: 80
80026973 TATTCGGATG
* *
80026983 ATATCC-GGCTAAGTCCCTAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
**
80027047 TTTGTGCGAGTAGTTG-CT
66 TTCATGC---TAG-TGACT
*
80027065 ATA-CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
80027129 TTCATGCTAGTGACT
66 TTCATGCTAGTGACT
* * *
80027144 ATATCCGGGCTAAGACCCGAA-GCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
80027204 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 8, Indels: 12
0.86 0.05 0.08
Matches are distributed among these distances:
78 16 0.13
79 28 0.22
80 18 0.14
81 2 0.02
82 63 0.50
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTCATGCTAGTGACT
Found at i:80029835 original size:29 final size:29
Alignment explanation
Indices: 80029801--80029878 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
80029791 GTGACGAGAT
* *
80029801 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
80029830 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
80029859 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
80029879 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:80037835 original size:29 final size:29
Alignment explanation
Indices: 80037802--80037903 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
80037792 TGACGAGATC
80037802 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
80037831 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
80037860 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
80037889 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
80037904 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:80050401 original size:41 final size:41
Alignment explanation
Indices: 80050279--80050423 Score: 125
Period size: 41 Copynumber: 3.5 Consensus size: 41
80050269 TTTTATCAAA
* *
80050279 TCACCGGCATTTAGCCTGCTAGGTTTTAAA-CCCGAATTCA-
1 TCACCGGCATTTAGCCTGCTAGG-CTTAAAGCCCGAACTCAT
* *** * * * *
80050319 TCACCTGCACGAAGCCTGCTAGACTTTAAGTCTGAACTCAT
1 TCACCGGCATTTAGCCTGCTAGGCTTAAAGCCCGAACTCAT
*
80050360 TCACCGGCATTTCGCCTGCTAGGCTTAAAGCCCGATA-TCATT
1 TCACCGGCATTTAGCCTGCTAGGCTTAAAGCCCGA-ACTCA-T
*
80050402 TCACAGGCATTATAGCCTGCTA
1 TCACCGGCATT-TAGCCTGCTA
80050424 CGCCCGAAAC
Statistics
Matches: 79, Mismatches: 21, Indels: 7
0.74 0.20 0.07
Matches are distributed among these distances:
39 4 0.05
40 25 0.32
41 29 0.37
42 12 0.15
43 9 0.11
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (41 bp):
TCACCGGCATTTAGCCTGCTAGGCTTAAAGCCCGAACTCAT
Found at i:80050482 original size:43 final size:44
Alignment explanation
Indices: 80050386--80050482 Score: 108
Period size: 43 Copynumber: 2.2 Consensus size: 44
80050376 TGCTAGGCTT
* *
80050386 AAAGCCCGATATCATTTCACAGGCATTATAGCCTGCTACGCCCG
1 AAAGCCCGATATCATCTCACAGGCATTATAGCCTACTACGCCCG
* * ** * *
80050430 AAA-CACGATATTATCTCACCTGCATTATAGCCTACTATGTCC-
1 AAAGCCCGATATCATCTCACAGGCATTATAGCCTACTACGCCCG
80050472 AAAGCCCGATA
1 AAAGCCCGATA
80050483 ATATTATTCA
Statistics
Matches: 43, Mismatches: 9, Indels: 3
0.78 0.16 0.05
Matches are distributed among these distances:
42 3 0.07
43 37 0.86
44 3 0.07
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.25
Consensus pattern (44 bp):
AAAGCCCGATATCATCTCACAGGCATTATAGCCTACTACGCCCG
Found at i:80055465 original size:48 final size:48
Alignment explanation
Indices: 80055341--80055529 Score: 184
Period size: 48 Copynumber: 3.9 Consensus size: 48
80055331 AAAGGGTAAG
* * * * *
80055341 ATGCCGATGCCATGTCCCAGACATGGTCTTACAATGGCTCTCATATATCT
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGC-C-CACATATCA
* * * * * *
80055391 ATGC-CATGACATGTTCCAAACATGGTCTTACACTAGCCCACATGTCG
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCA
* * *
80055438 AGGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCA
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCA
* * *
80055486 ATG-TCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT
1 ATGCT-GATGCCATGTCCCAGACATGGTCTTACACTAGCCCACAT
80055530 GCTCACATAA
Statistics
Matches: 115, Mismatches: 22, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
47 10 0.09
48 74 0.64
49 27 0.23
50 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCA
Found at i:80061862 original size:46 final size:45
Alignment explanation
Indices: 80061809--80061984 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
80061799 TATTTGGGCA
80061809 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
80061855 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
80061902 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
80061948 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80061985 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:80061964 original size:93 final size:93
Alignment explanation
Indices: 80061805--80061976 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
80061795 AGGATATTTG
* *
80061805 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80061870 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
80061898 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80061963 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
80061977 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:80068810 original size:10 final size:10
Alignment explanation
Indices: 80068795--80068823 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
80068785 TTAAACTCTA
80068795 AAAGATAAAT
1 AAAGATAAAT
80068805 AAAGATAAAT
1 AAAGATAAAT
80068815 AAAGATAAA
1 AAAGATAAA
80068824 AGCTGAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.17
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:80070835 original size:26 final size:25
Alignment explanation
Indices: 80070773--80070846 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 25
80070763 TCGATTTTCC
80070773 TATATATAAGAAGAGAGAATAAAAATTA
1 TATATATAAGAA-A-A-AATAAAAATTA
*
80070801 T-TAACATAAGAAAAAATAGAAAATTA
1 TAT-ATATAAGAAAAAATA-AAAATTA
*
80070827 TATATATAA-ATAAAATAAAA
1 TATATATAAGAAAAAATAAAA
80070847 TAAACATAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
24 3 0.08
25 11 0.28
26 14 0.35
27 3 0.08
28 9 0.22
ACGTcount: A:0.65, C:0.01, G:0.08, T:0.26
Consensus pattern (25 bp):
TATATATAAGAAAAAATAAAAATTA
Found at i:80072121 original size:21 final size:21
Alignment explanation
Indices: 80072097--80072142 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
80072087 AAAATCTTTT
*
80072097 GTTTCCTAATGGAAATCAAGA
1 GTTTCCTAATGGAAATCAACA
* **
80072118 GTTTGCTGTTGGAAATCAACA
1 GTTTCCTAATGGAAATCAACA
80072139 GTTT
1 GTTT
80072143 ATCGTTGTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (21 bp):
GTTTCCTAATGGAAATCAACA
Found at i:80075142 original size:289 final size:289
Alignment explanation
Indices: 80074623--80075203 Score: 1153
Period size: 289 Copynumber: 2.0 Consensus size: 289
80074613 ATTTTTACTT
80074623 TATCTAACTAAACCCTAAATGAAAGCTTGATAAATGGATTTAGTAAAATTCATGGGATTTGCTTG
1 TATCTAACTAAACCCTAAATGAAAGCTTGATAAATGGATTTAGTAAAATTCATGGGATTTGCTTG
80074688 TATATGAAAATGATAATTTGAATTATGGAAATTTTTTAAAGGTGCAATTGTGTTCTTAAAATGAA
66 TATATGAAAATGATAATTTGAATTATGGAAATTTTTTAAAGGTGCAATTGTGTTCTTAAAATGAA
80074753 TTGAAAAGTATATATGTAGTGAATTTGAAGAAAAATGACTAAATTGCTAAATTTTTAAAAGTTAG
131 TTGAAAAGTATATATGTAGTGAATTTGAAGAAAAATGACTAAATTGCTAAATTTTTAAAAGTTAG
80074818 ATAGGTTAAATAGATATTAATATGAATAATTTAAGTGAAATCTTAAATGCTATTACAATAAATGT
196 ATAGGTTAAATAGATATTAATATGAATAATTTAAGTGAAATCTTAAATGCTATTACAATAAATGT
80074883 AAAGTGAAATTTGATGATTGTTGATTCTA
261 AAAGTGAAATTTGATGATTGTTGATTCTA
80074912 TATCTAACTAAACCCTAAATGAAAGCTTGATAAATGGATTTAGTAAAATTCATGGGATTTGCTTG
1 TATCTAACTAAACCCTAAATGAAAGCTTGATAAATGGATTTAGTAAAATTCATGGGATTTGCTTG
*
80074977 TATATTAAAATGATAATTTGAATTATGGAAATTTTTTAAAGGTGCAATTGTGTTCTTAAAATGAA
66 TATATGAAAATGATAATTTGAATTATGGAAATTTTTTAAAGGTGCAATTGTGTTCTTAAAATGAA
80075042 TTGAAAAGTATATATGTAGTGAATTTGAAGAAAAATGACTAAATTGCTAAATTTTTAAAAGTTAG
131 TTGAAAAGTATATATGTAGTGAATTTGAAGAAAAATGACTAAATTGCTAAATTTTTAAAAGTTAG
80075107 ATAGGTTAAATAGATATTAATATGAATAATTTAAGTGAAATCTTAAATGCTATTACAATAAATGT
196 ATAGGTTAAATAGATATTAATATGAATAATTTAAGTGAAATCTTAAATGCTATTACAATAAATGT
80075172 AAAGTGAAATTTGATGATTGTTGATTCTA
261 AAAGTGAAATTTGATGATTGTTGATTCTA
80075201 TAT
1 TAT
80075204 AGATAAGGAC
Statistics
Matches: 291, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
289 291 1.00
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.37
Consensus pattern (289 bp):
TATCTAACTAAACCCTAAATGAAAGCTTGATAAATGGATTTAGTAAAATTCATGGGATTTGCTTG
TATATGAAAATGATAATTTGAATTATGGAAATTTTTTAAAGGTGCAATTGTGTTCTTAAAATGAA
TTGAAAAGTATATATGTAGTGAATTTGAAGAAAAATGACTAAATTGCTAAATTTTTAAAAGTTAG
ATAGGTTAAATAGATATTAATATGAATAATTTAAGTGAAATCTTAAATGCTATTACAATAAATGT
AAAGTGAAATTTGATGATTGTTGATTCTA
Found at i:80083027 original size:45 final size:45
Alignment explanation
Indices: 80082963--80083053 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
80082953 TATGGTTCTC
*
80082963 TTTTCTAAATTTAAAATGTTGAGAAAAATAAATATCCTTAAATGT
1 TTTTCTAAATTTAAAATGTTGAGAAAAATAAATATCCTCAAATGT
* * *
80083008 TTTTCTAAATTTCAAATGTTGATAAAATTAAATATCCTCAAATGT
1 TTTTCTAAATTTAAAATGTTGAGAAAAATAAATATCCTCAAATGT
80083053 T
1 T
80083054 GAGAAAGATG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.42
Consensus pattern (45 bp):
TTTTCTAAATTTAAAATGTTGAGAAAAATAAATATCCTCAAATGT
Found at i:80084260 original size:16 final size:15
Alignment explanation
Indices: 80084239--80084274 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
80084229 ACTAAAATAG
80084239 AAAAAAAATGAAAAAT
1 AAAAAAAATG-AAAAT
*
80084255 AAAAAAGATGAAAAT
1 AAAAAAAATGAAAAT
80084270 AAAAA
1 AAAAA
80084275 CTAAACCTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.11
Consensus pattern (15 bp):
AAAAAAAATGAAAAT
Found at i:80089620 original size:29 final size:31
Alignment explanation
Indices: 80089568--80089636 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 31
80089558 CCACCCTTAA
* * *
80089568 AATATTTATACTATTAGTCCTTCAACTTTT-
1 AATATTTACACTATTAATCCTTCAAATTTTG
*
80089598 CATATTTACACT-TTAATCCTTCAAATTTTG
1 AATATTTACACTATTAATCCTTCAAATTTTG
80089628 AATATTTAC
1 AATATTTAC
80089637 TCTAGAGCCA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
29 15 0.45
30 18 0.55
ACGTcount: A:0.32, C:0.17, G:0.03, T:0.48
Consensus pattern (31 bp):
AATATTTACACTATTAATCCTTCAAATTTTG
Found at i:80091770 original size:44 final size:43
Alignment explanation
Indices: 80091629--80091784 Score: 171
Period size: 42 Copynumber: 3.7 Consensus size: 43
80091619 AGCTCGTACA
* *
80091629 ATGCCAACGTCCCAGACGTGGTCTCAC-TGT-AATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAATCAAA-GTCG
* *
80091671 ATGCC-ACTGTCCCAGACAG-GGTCTTATACG-AAATC-AAGTACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAAATCAAAGT-CG
*
80091713 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACCATAAGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAATCA-AAGTCG
*
80091757 ATGCCAACGTCCCAGATGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
80091785 CAAAAACACA
Statistics
Matches: 96, Mismatches: 8, Indels: 18
0.79 0.07 0.15
Matches are distributed among these distances:
41 4 0.04
42 47 0.49
43 12 0.12
44 29 0.30
45 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAAATCAAAGTCG
Found at i:80094274 original size:30 final size:30
Alignment explanation
Indices: 80094240--80094308 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
80094230 ATGGGGCTAA
80094240 CCGTGTGTCACACACGGCCTAGACACACGC
1 CCGTGTGTCACACACGGCCTAGACACACGC
*
80094270 CCGTGTGTCACACACGGCCTAGACGCACGC
1 CCGTGTGTCACACACGGCCTAGACACACGC
80094300 CCGTGTGTC
1 CCGTGTGTC
80094309 TACCCATGTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.19, C:0.39, G:0.26, T:0.16
Consensus pattern (30 bp):
CCGTGTGTCACACACGGCCTAGACACACGC
Found at i:80120661 original size:49 final size:49
Alignment explanation
Indices: 80120605--80120729 Score: 137
Period size: 49 Copynumber: 2.5 Consensus size: 49
80120595 GTGGTGTTTT
* *
80120605 AGTGTAAGACCTATTTGGGACATGGCATCGTCAC-CGATAGATGAGAGCC
1 AGTGTAAGACCTATTTGGGACATGGCATCGAC-CTCGATAGATGAAAGCC
* * * * *
80120654 AGTGTAAGACCTGTCTGGGACATAGCATCGACCTCGCTATATGAAAGCC
1 AGTGTAAGACCTATTTGGGACATGGCATCGACCTCGATAGATGAAAGCC
*
80120703 TGTGTAAGACC-ATGTCTGGGACATGGC
1 AGTGTAAGACCTAT-T-TGGGACATGGC
80120730 GTCAACATCT
Statistics
Matches: 62, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
48 2 0.03
49 50 0.81
50 10 0.16
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCTATTTGGGACATGGCATCGACCTCGATAGATGAAAGCC
Found at i:80125827 original size:29 final size:28
Alignment explanation
Indices: 80125793--80125895 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
80125783 TACTCAATCA
*
80125793 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
80125822 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
80125851 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
80125880 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
80125896 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:80134929 original size:29 final size:28
Alignment explanation
Indices: 80134895--80134997 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
80134885 TACTCAATCA
*
80134895 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
80134924 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
80134953 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
80134982 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
80134998 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:80142931 original size:29 final size:28
Alignment explanation
Indices: 80142897--80142999 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
80142887 TACTCAATCA
*
80142897 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
80142926 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
80142955 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
80142984 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
80143000 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:80148680 original size:46 final size:47
Alignment explanation
Indices: 80148512--80148682 Score: 143
Period size: 46 Copynumber: 3.7 Consensus size: 47
80148502 TATGTGTGCT
* * * * *
80148512 AGTGTAAGACATGTCTGGGACATGCATCAGC---CACAACATGATGGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAAC-GGA-AGCC
* ***
80148558 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA-ACGGAAGCC
* * * * * *
80148606 AGTGCAAAACTTGTCTGGGACATACATCGGCATTGAG-ACGGGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAACGGAAGCC
*
80148652 AGTGTAAGACATGTTTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
80148683 CTTGCAATAT
Statistics
Matches: 100, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
46 60 0.60
48 35 0.35
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAACGGAAGCC
Found at i:80150062 original size:20 final size:21
Alignment explanation
Indices: 80150023--80150062 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
80150013 GTTATAATGA
* *
80150023 CCACACGGGCGTGTTGCCCTT
1 CCACACGAGAGTGTTGCCCTT
80150044 CCACACGAGAGTG-TGCCCT
1 CCACACGAGAGTGTTGCCCT
80150063 GTTTCAAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.38, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACGAGAGTGTTGCCCTT
Found at i:80153347 original size:38 final size:38
Alignment explanation
Indices: 80153296--80153370 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
80153286 AAGTTAGTTC
*
80153296 ACAATTTCTTACTTCTTTAAAACATTTTCTATGGCATT
1 ACAATTTCTTACTTCTTTAAAACATTTCCTATGGCATT
*
80153334 ACAATTTCTTACTTCTTTAAAACATTTCCTGTGGCAT
1 ACAATTTCTTACTTCTTTAAAACATTTCCTATGGCAT
80153371 CCTAATTGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.45
Consensus pattern (38 bp):
ACAATTTCTTACTTCTTTAAAACATTTCCTATGGCATT
Found at i:80154687 original size:24 final size:24
Alignment explanation
Indices: 80154660--80154707 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
80154650 TATGCATTTG
80154660 CCTAGACTCACATTTTGTGAGGTT
1 CCTAGACTCACATTTTGTGAGGTT
*
80154684 CCTAGACTCATATTTTGTGAGGTT
1 CCTAGACTCACATTTTGTGAGGTT
80154708 TGCCCGTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.40
Consensus pattern (24 bp):
CCTAGACTCACATTTTGTGAGGTT
Found at i:80157108 original size:9 final size:9
Alignment explanation
Indices: 80157094--80157119 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
80157084 GACTAAATCA
80157094 GAAACATTT
1 GAAACATTT
80157103 GAAACATTT
1 GAAACATTT
80157112 GAAACATT
1 GAAACATT
80157120 GAGGAAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.31
Consensus pattern (9 bp):
GAAACATTT
Found at i:80159114 original size:26 final size:26
Alignment explanation
Indices: 80159085--80159140 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
80159075 TCACACAAGT
* *
80159085 TGTGAAATGGATCTGCTCACATGAGC
1 TGTGAAATGGACCTGCTCACATGAGA
*
80159111 TGTGAAATGGGCCTGCTCACATGAGA
1 TGTGAAATGGACCTGCTCACATGAGA
80159137 TGTG
1 TGTG
80159141 GGTTAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (26 bp):
TGTGAAATGGACCTGCTCACATGAGA
Found at i:80160046 original size:178 final size:178
Alignment explanation
Indices: 80159713--80160074 Score: 690
Period size: 178 Copynumber: 2.0 Consensus size: 178
80159703 CCAAATTTCC
*
80159713 ATGGCACCCAATACAGCCCACATTTATAATAGTTTCACATCAAGTCCTTATATTTTTATTATTTC
1 ATGGCACCCAATACAGCCCACATTTATAATAGTTTCACATCAAATCCTTATATTTTTATTATTTC
80159778 AACAATTTAGTCCCTAATTGGTAAATTCATCAAAATTACTTAACATAATATTTTTAAATATCAAC
66 AACAATTTAGTCCCTAATTGGTAAATTCATCAAAATTACTTAACATAATATTTTTAAATATCAAC
80159843 AAACATTTCAAATTCATCATTAACATCTAAAACCACAAAGATTTATCA
131 AAACATTTCAAATTCATCATTAACATCTAAAACCACAAAGATTTATCA
80159891 ATGGCACCCAATACAGCCCACATTTATAATAGTTTCACATCAAATCCTTATATTTTTATTATTTC
1 ATGGCACCCAATACAGCCCACATTTATAATAGTTTCACATCAAATCCTTATATTTTTATTATTTC
*
80159956 AACAATTTAGTCCTTAATTGGTAAATTCATCAAAATTACTTAACATAATA-TTTTAAATATCAAC
66 AACAATTTAGTCCCTAATTGGTAAATTCATCAAAATTACTTAACATAATATTTTTAAATATCAAC
80160020 AAACATTTCAAATTCATCATTTAACATCTAAAACCACAAAGATTTATCA
131 AAACATTTCAAATTCATCA-TTAACATCTAAAACCACAAAGATTTATCA
80160069 ATGGCA
1 ATGGCA
80160075 GCATTAAATA
Statistics
Matches: 181, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
177 33 0.18
178 148 0.82
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.35
Consensus pattern (178 bp):
ATGGCACCCAATACAGCCCACATTTATAATAGTTTCACATCAAATCCTTATATTTTTATTATTTC
AACAATTTAGTCCCTAATTGGTAAATTCATCAAAATTACTTAACATAATATTTTTAAATATCAAC
AAACATTTCAAATTCATCATTAACATCTAAAACCACAAAGATTTATCA
Found at i:80166342 original size:27 final size:26
Alignment explanation
Indices: 80166287--80166372 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 26
80166277 ATAACATTTG
* *
80166287 AAAATTGTAAAATAA-AAAAAAACTA-A
1 AAAATTTTAAAA-AAGATAAAAA-TATA
* *
80166313 AAAATATTTTAAAAATATAAAAATATA
1 AAAAT-TTTAAAAAAGATAAAAATATA
80166340 AAAATTTTAAAAAAGATATAAAATATA
1 AAAATTTTAAAAAAGATA-AAAATATA
*
80166367 GAAATT
1 AAAATT
80166373 AATATATAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
26 20 0.40
27 30 0.60
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.28
Consensus pattern (26 bp):
AAAATTTTAAAAAAGATAAAAATATA
Found at i:80167154 original size:5 final size:5
Alignment explanation
Indices: 80167144--80167174 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
80167134 TATTTTATGA
80167144 ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG A
1 ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG A
80167175 GTGAAGATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.39, T:0.19
Consensus pattern (5 bp):
ATAGG
Found at i:80168484 original size:2 final size:2
Alignment explanation
Indices: 80168477--80168508 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
80168467 TAAAGAAATG
*
80168477 TA TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
80168509 CGTGTTGGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:80171958 original size:10 final size:10
Alignment explanation
Indices: 80171916--80171977 Score: 72
Period size: 10 Copynumber: 6.1 Consensus size: 10
80171906 GGGGAATGTG
80171916 TAAA-AAAAA
1 TAAATAAAAA
* *
80171925 TATATATAAA
1 TAAATAAAAA
*
80171935 TAGACATGAAAA
1 TA-A-ATAAAAA
80171947 TAAATAAAAA
1 TAAATAAAAA
80171957 TAAATAAAAA
1 TAAATAAAAA
80171967 TAAATAAAAA
1 TAAATAAAAA
80171977 T
1 T
80171978 TATACAAGTG
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
9 3 0.07
10 33 0.75
11 1 0.02
12 7 0.16
ACGTcount: A:0.73, C:0.02, G:0.03, T:0.23
Consensus pattern (10 bp):
TAAATAAAAA
Found at i:80172031 original size:24 final size:25
Alignment explanation
Indices: 80172000--80172046 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
80171990 AATAAATATA
80172000 AACATTAAA-ATA-AATGGTATAATT
1 AACATTAAATATATAAT-GTATAATT
80172024 AACATTAAATATATAATGTATAA
1 AACATTAAATATATAATGTATAA
80172047 ATGCAAGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.43
25 9 0.43
26 3 0.14
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
AACATTAAATATATAATGTATAATT
Found at i:80173024 original size:5 final size:5
Alignment explanation
Indices: 80173014--80173044 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
80173004 AAAAAAGTAG
80173014 AAGAA AAGAA AAGAA AAGAA AAGAA ATAGAA
1 AAGAA AAGAA AAGAA AAGAA AAGAA A-AGAA
80173045 TGCTTCTAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 21 0.84
6 4 0.16
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.03
Consensus pattern (5 bp):
AAGAA
Found at i:80173845 original size:152 final size:150
Alignment explanation
Indices: 80173683--80174156 Score: 519
Period size: 152 Copynumber: 3.1 Consensus size: 150
80173673 TAAAGTTTTC
* * * * *
80173683 TTTAGAAAAAATCATTATTTTTCTTAAAAATCAAAAC-CTTATTTCGAATTAGTTAAAAAAAAGT
1 TTTAAAAAAAATCATTATTTTTCTTAAAAATTAAAGCTTTTATTT-GAAATAGTTAAAAAAAA-T
*
80173747 CAAAACTTTGTTTTAAAAAATTTAAACTTTCCTTTAAAATGACTTAAAAAAAGATATTTTTATTT
64 CAAAACTTTGTTTT-AAAAATTTAAACTTTCCTTTAAAATGACTTAAAAAAAAATATTTTTATTT
*
80173812 TTCAAAATCTAAACTTTCTCCCT
128 TTCAAAATCTAAACTTTCTCCTT
*
80173835 TTTAAAAAAAAT-ATTATTTTTCTTAAAAATTGAAGCTTTTTATTTTGAAATAGTTAAAAAAAAT
1 TTTAAAAAAAATCATTATTTTTCTTAAAAATTAAAGC-TTTTA-TTTGAAATAGTTAAAAAAAAT
* * *
80173899 AAAAAGTTTTGTTTT-AAAATTTGAAACTTTCCTTTAAAATGAC-TAGAAAAAACATATTTTTAT
64 CAAAA-CTTTGTTTTAAAAATTT-AAACTTTCCTTTAAAATGACTTA-AAAAAAAATATTTTTAT
*
80173962 TTTTCAAAATCCAAACTTTCTCCTTTTTTT
126 TTTTCAAAATCTAAACTTTCTCC-----TT
* * * *
80173992 TTTAAAAAAAAACACTATTTTTCTTGAAGATTAAAGCTTTTACTTTGAAATAGTTGAAGAAAAAA
1 TTTAAAAAAAATCATTATTTTTCTTAAAAATTAAAGCTTTTA-TTTGAAATAGTT----AAAAAA
* ** * * *
80174057 AATCAAAACTTTGTTTTAAAATTTTAATTTTTCCTTTAAAATTACTAAAAAAAAAAGATTTTTA-
61 AATCAAAACTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATGACTTAAAAAAAAATATTTTTAT
* *
80174121 -TGTCAAAATCTAAACTTTCTCTTTT
126 TTTTCAAAATCTAAACTTTCTC-CTT
80174146 TTTAAAAAAAA
1 TTTAAAAAAAA
80174157 AATCAAAACT
Statistics
Matches: 274, Mismatches: 29, Indels: 36
0.81 0.09 0.11
Matches are distributed among these distances:
151 30 0.11
152 74 0.27
153 27 0.10
154 16 0.06
157 29 0.11
158 39 0.14
160 39 0.14
161 20 0.07
ACGTcount: A:0.43, C:0.10, G:0.05, T:0.42
Consensus pattern (150 bp):
TTTAAAAAAAATCATTATTTTTCTTAAAAATTAAAGCTTTTATTTGAAATAGTTAAAAAAAATCA
AAACTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATGACTTAAAAAAAAATATTTTTATTTTTC
AAAATCTAAACTTTCTCCTT
Found at i:80174197 original size:21 final size:20
Alignment explanation
Indices: 80174173--80174212 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
80174163 AACTTTTCCC
* *
80174173 AAAATCAAACCTTTTTTTTA
1 AAAAACAAACCTTTATTTTA
*
80174193 AAAAAGAAACCTTTATTTTA
1 AAAAACAAACCTTTATTTTA
80174213 GAAAGGGGGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.12, G:0.03, T:0.40
Consensus pattern (20 bp):
AAAAACAAACCTTTATTTTA
Found at i:80184262 original size:44 final size:42
Alignment explanation
Indices: 80184189--80184288 Score: 139
Period size: 44 Copynumber: 2.3 Consensus size: 42
80184179 TCCCAGGTAG
* * *
80184189 GGTCTTACATGAAATCAAATACAATGCCAACGTCTCAGACGT
1 GGTCTTACACGAAATCAAATACAATGCCAACGTCCCAAACGT
80184231 GGTCTTACACGTAAATCATAAGT-CAATGCCAACGTCCCAAACGT
1 GGTCTTACACG-AAATCA-AA-TACAATGCCAACGTCCCAAACGT
80184275 GGTCTTACACGAAA
1 GGTCTTACACGAAA
80184289 ACACATATTG
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
42 10 0.19
43 9 0.17
44 32 0.62
45 1 0.02
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACAATGCCAACGTCCCAAACGT
Found at i:80185392 original size:36 final size:36
Alignment explanation
Indices: 80185348--80185426 Score: 124
Period size: 36 Copynumber: 2.2 Consensus size: 36
80185338 ACTCAGTCGA
*
80185348 TTCT-AGTGTAAGTATTCTGTTCTCCCAAGCGATTT
1 TTCTAAGTGTAAGTATTCTGTTCTCCCAAGAGATTT
*
80185383 TTCTAAGTGTAAGTATTCTGTTCTCGCAAGAGATTT
1 TTCTAAGTGTAAGTATTCTGTTCTCCCAAGAGATTT
*
80185419 TGCTAAGT
1 TTCTAAGT
80185427 ATCAATTATT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
35 4 0.10
36 36 0.90
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (36 bp):
TTCTAAGTGTAAGTATTCTGTTCTCCCAAGAGATTT
Found at i:80190687 original size:47 final size:47
Alignment explanation
Indices: 80190598--80190691 Score: 129
Period size: 47 Copynumber: 2.0 Consensus size: 47
80190588 GAGCATAACT
* *
80190598 GTAAATGTGATTAGGCCTAATGGCCGTATGAATGTGATTTGGGCCTA
1 GTAAATGTGATTAGGCCTAATGGCCATATGAATGAGATTTGGGCCTA
*
80190645 GTAAATGTGATTGGGCCTAATGGGCCATATGGAA-GAGA-TTGGGCCTA
1 GTAAATGTGATTAGGCCTAAT-GGCCATAT-GAATGAGATTTGGGCCTA
80190692 ATGGGCTATA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
47 29 0.69
48 10 0.24
49 3 0.07
ACGTcount: A:0.27, C:0.13, G:0.32, T:0.29
Consensus pattern (47 bp):
GTAAATGTGATTAGGCCTAATGGCCATATGAATGAGATTTGGGCCTA
Found at i:80193669 original size:14 final size:14
Alignment explanation
Indices: 80193635--80193669 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
80193625 CTCTTTGGGC
80193635 TTTATGGTTTTTAG
1 TTTATGGTTTTTAG
* *
80193649 TTGATGGTTTTTGG
1 TTTATGGTTTTTAG
80193663 TTTATGG
1 TTTATGG
80193670 ATAATTTGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.29, T:0.60
Consensus pattern (14 bp):
TTTATGGTTTTTAG
Found at i:80201910 original size:30 final size:30
Alignment explanation
Indices: 80201874--80201974 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
80201864 GACAAGATTG
* * *
80201874 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
80201904 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
80201932 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
80201961 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
80201975 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:80201986 original size:29 final size:28
Alignment explanation
Indices: 80201903--80201978 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
80201893 AAAATTGTAC
* *
80201903 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
80201931 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
80201960 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
80201979 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:80206962 original size:27 final size:29
Alignment explanation
Indices: 80206908--80206978 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 29
80206898 AAAATTGTAC
*
80206908 AGCACTAAGTGTGCGAGTTTG---TACTAT
1 AGCACTAAGTGTGCGAGTCTGAAATA-TAT
80206935 AGCACTAAGTGTGCGAG-CTGAAAATATAT
1 AGCACTAAGTGTGCGAGTCTG-AAATATAT
80206964 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
80206979 GATTCACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
26 2 0.05
27 17 0.44
29 18 0.46
30 2 0.05
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGTCTGAAATATAT
Found at i:80214796 original size:30 final size:30
Alignment explanation
Indices: 80214760--80214860 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
80214750 GACAAGATTG
* * *
80214760 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
80214790 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
80214818 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
80214847 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
80214861 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:80214872 original size:29 final size:28
Alignment explanation
Indices: 80214789--80214864 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
80214779 AAAATTGTAC
* *
80214789 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
80214817 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
80214846 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
80214865 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:80217761 original size:42 final size:43
Alignment explanation
Indices: 80217713--80217906 Score: 333
Period size: 42 Copynumber: 4.6 Consensus size: 43
80217703 CCGGCATTAC
80217713 GCCTGCTAGGCACGAAGGCCCGAATACACAT-ACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
80217755 GCCTGCTAGGCACGAAGGCCCGAATACACAT-ACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
80217797 GCCTGCTAGGCACGAAGG-CCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
80217839 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
80217882 GCCTGCTAGGCACGAAGGCCC-AATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
80217907 TAATACCAGC
Statistics
Matches: 147, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
41 12 0.08
42 90 0.61
43 45 0.31
ACGTcount: A:0.30, C:0.33, G:0.25, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:80217962 original size:36 final size:37
Alignment explanation
Indices: 80217904--80217976 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 37
80217894 CGAAGGCCCA
* * *
80217904 ATATAATACCAGCACTAGGCCT-GGGATTTATCCCGG
1 ATATAATACCAGCACGAAGCCTCGGGATTTAACCCGG
80217940 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
1 ATATAATACCAGCACGAAGCCT-CGGGATTTAACCCG
80217977 AATACACATC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
36 20 0.62
38 12 0.38
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (37 bp):
ATATAATACCAGCACGAAGCCTCGGGATTTAACCCGG
Found at i:80221179 original size:12 final size:12
Alignment explanation
Indices: 80221162--80221187 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
80221152 TATTTGTTTC
80221162 TTGTTTTAATAT
1 TTGTTTTAATAT
80221174 TTGTTTTAATAT
1 TTGTTTTAATAT
80221186 TT
1 TT
80221188 TTAAATGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (12 bp):
TTGTTTTAATAT
Found at i:80221203 original size:22 final size:23
Alignment explanation
Indices: 80221165--80221214 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
80221155 TTGTTTCTTG
*
80221165 TTTT-AATATTTGTTTTAATAT-
1 TTTTAAATATTTGATTTAATATA
* *
80221186 TTTTAAATGTTTGATTTATTATA
1 TTTTAAATATTTGATTTAATATA
80221209 TTTTAA
1 TTTTAA
80221215 TTTTTTTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 4 0.17
22 14 0.58
23 6 0.25
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (23 bp):
TTTTAAATATTTGATTTAATATA
Found at i:80221225 original size:23 final size:22
Alignment explanation
Indices: 80221165--80221226 Score: 54
Period size: 23 Copynumber: 2.8 Consensus size: 22
80221155 TTGTTTCTTG
* *
80221165 TTTTAATATTTGT-TTTAATAT
1 TTTTAATTTTTTTATTTAATAT
* * * *
80221186 TTTTAAATGTTTGATTTATTAT
1 TTTTAATTTTTTTATTTAATAT
80221208 ATTTTAATTTTTTTATTTA
1 -TTTTAATTTTTTTATTTA
80221227 CTGAAATAAG
Statistics
Matches: 30, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
21 8 0.27
22 7 0.23
23 15 0.50
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (22 bp):
TTTTAATTTTTTTATTTAATAT
Found at i:80221785 original size:42 final size:42
Alignment explanation
Indices: 80221726--80221911 Score: 219
Period size: 42 Copynumber: 4.4 Consensus size: 42
80221716 ACAGGACCTC
** * * * *
80221726 GTCTCTAAATACAATGAAAAGTGAAAGGACCTCTACACCCGA
1 GTCTCTAAATGTAATGAAAAGTGAATGGACCTCCACACCTGG
* * * *
80221768 GTCTCTAGATGCAATGAAAAGTGAATGGACCACCACTCCTGG
1 GTCTCTAAATGTAATGAAAAGTGAATGGACCTCCACACCTGG
*
80221810 GTCTCCAAATGTAATGAAAAGTGAATGGACCTCCACACCTGG
1 GTCTCTAAATGTAATGAAAAGTGAATGGACCTCCACACCTGG
* * ** *
80221852 GTCTCCAAATGTAATGAAAAGTGAATGGACCCCCACACAAGC
1 GTCTCTAAATGTAATGAAAAGTGAATGGACCTCCACACCTGG
*
80221894 GTCTCTAGATGTAATGAA
1 GTCTCTAAATGTAATGAA
80221912 TGTTTTCCTT
Statistics
Matches: 125, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 125 1.00
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.21
Consensus pattern (42 bp):
GTCTCTAAATGTAATGAAAAGTGAATGGACCTCCACACCTGG
Found at i:80224330 original size:17 final size:19
Alignment explanation
Indices: 80224233--80224323 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
80224223 ATAATCTTCA
*
80224233 ATGATATACAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80224252 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80224271 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80224288 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80224306 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
80224324 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:80224612 original size:18 final size:18
Alignment explanation
Indices: 80224587--80224623 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
80224577 TGTTTCCTTG
*
80224587 ATTTTTTTTATATATTTTA
1 ATTTTTTTAATA-ATTTTA
80224606 ATTTTTTTAATAATTTTA
1 ATTTTTTTAATAATTTTA
80224624 GTATCATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
ATTTTTTTAATAATTTTA
Found at i:80227729 original size:8 final size:8
Alignment explanation
Indices: 80227716--80227743 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
80227706 AAAAAGAGAA
80227716 AGAAAGAG
1 AGAAAGAG
80227724 AGAAAGAG
1 AGAAAGAG
80227732 AGAAAGAG
1 AGAAAGAG
80227740 AGAA
1 AGAA
80227744 GAGGGTCACG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (8 bp):
AGAAAGAG
Found at i:80232961 original size:78 final size:78
Alignment explanation
Indices: 80232850--80233117 Score: 412
Period size: 78 Copynumber: 3.4 Consensus size: 78
80232840 TTTTGACAGA
* *
80232850 GAGCAGATCGAAGACATAGTAGATCTGACCTTCATTGAAGCAGATCTAAGATGATTTGGCATCTC
1 GAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
80232915 TGTATTAGACGGG
66 TGTATTAGACGGG
* *
80232928 GAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAAGTAGATCCAAGATGATTTGGCATCTC
1 GAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
80232993 TGTATTAGACGGG
66 TGTATTAGACGGG
* * *
80233006 GAGCAGATCGAAGACAAAACAGAT-TGGACCTTCATTGAAGCAGATCGAAGATGATTTGGCATCT
1 GAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCT
**
80233070 CTGTATTAGATAGG
65 CTGTATTAGACGGG
** *
80233084 GAATAGATCGAAGACATAGCAGATCTGAACTTCA
1 GAGCAGATCGAAGACATAGCAGATCTGACCTTCA
80233118 AATGTTTACA
Statistics
Matches: 173, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
77 1 0.01
78 171 0.99
79 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (78 bp):
GAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
TGTATTAGACGGG
Found at i:80233214 original size:45 final size:45
Alignment explanation
Indices: 80233141--80233286 Score: 170
Period size: 45 Copynumber: 3.3 Consensus size: 45
80233131 GAGAAGATCC
* * * *
80233141 AAGATGAG-AGATTTGACATCTATATATTAGACGAGGAGCAAATCG
1 AAGAT-AGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
* * * *
80233186 GAGATAACAGATTTGGCATCTCTGTATTAGACGGGGACCAAATTG
1 AAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
* * *
80233231 AAGA-AGCAGATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCG
1 AAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
80233275 AAGATAGCAGAT
1 AAGATAGCAGAT
80233287 ATCGCCTTCC
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
44 39 0.46
45 45 0.54
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (45 bp):
AAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
Found at i:80233651 original size:17 final size:18
Alignment explanation
Indices: 80233639--80233680 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 18
80233629 AATCTTCAGT
80233639 GATATGCAATCTTAGATA
1 GATATGCAATCTTAGATA
80233657 CGATATGCAATCTTAGA-A
1 -GATATGCAATCTTAGATA
80233675 GATATG
1 GATATG
80233681 ATTTTGTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 6 0.26
18 1 0.04
19 16 0.70
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (18 bp):
GATATGCAATCTTAGATA
Found at i:80233986 original size:18 final size:18
Alignment explanation
Indices: 80233963--80233998 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
80233953 TGTTTCCCTG
80233963 ATTTTTTT-ATATATTTTA
1 ATTTTTTTAATA-ATTTTA
80233981 ATTTTTTTAATAATTTTA
1 ATTTTTTTAATAATTTTA
80233999 GTATTATATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.82
19 3 0.18
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTTTTTAATAATTTTA
Found at i:80241449 original size:48 final size:47
Alignment explanation
Indices: 80241235--80241506 Score: 177
Period size: 48 Copynumber: 5.7 Consensus size: 47
80241225 TAGGGTATGA
* * ** *
80241235 TGTCAATGCCATGTCCCAGACATGGTCTTCCACTGGCTCAT-TCAT-CC
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTAACTC-TCT-ATACG
* * * * * * *
80241282 AGTCGATGCCCTGTCCCAAACATGGTCTTACACTGACTATCGAAATCG
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCTATA-CG
* * * * * *
80241330 AGGCCGACGCCATGTCCTAGACATGGT-TATACACTAGCTCTCACATATCCG
1 -TGTCGATGCCATGTCCCAGACATGGTCT-TACACTAACTCT--C-TATACG
*
80241381 TG-CTGATGCTATGTCCCAGACATGGTCTTACACTAACATCTCTATACG
1 TGTC-GATGCCATGTCCCAGACATGGTCTTACACTAAC-TCTCTATACG
80241429 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTC-ATA--
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACT-A-AC-TCTCTATACG
*
80241476 -GCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACT
80241507 GGCTTACATC
Statistics
Matches: 181, Mismatches: 30, Indels: 31
0.75 0.12 0.13
Matches are distributed among these distances:
44 10 0.06
45 14 0.08
46 8 0.04
47 32 0.18
48 38 0.21
49 36 0.20
50 35 0.19
51 7 0.04
52 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (47 bp):
TGTCGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCTATACG
Found at i:80241518 original size:46 final size:45
Alignment explanation
Indices: 80241244--80241537 Score: 161
Period size: 50 Copynumber: 6.2 Consensus size: 45
80241234 ATGTCAATGC
* * * * *
80241244 CATGTCCCAGACATGGTCTTCCACTGGCTCATTCATC-CAGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGACACA-TC-TCGAAGCCGATG
* * ** * *
80241290 CCCTGTCCCAAACATGGTCTTACACTGACTATCGAAATCGAGGCCGACG
1 -CATGTCCCAGACATGGTCTTACACTGAC-A-C-ATCTCGAAGCCGATG
* * * * *
80241339 CCATGTCCTAGACATGGT-TATACACTAGCTCTCACATATCCG-TGCTGATG
1 -CATGTCCCAGACATGGTCT-TACACT-G---ACACATCT-CGAAGCCGATG
* *
80241389 CTATGTCCCAGACATGGTCTTACACT-A-ACATCTCTATACGTGTCGATG
1 C-ATGTCCCAGACATGGTCTTACACTGACACATCTCGA-A---GCCGATG
80241437 CCATGTCCCAGACATGGTCTTACACTGACACATCTC-ATAGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGACACATCTCGA-AGCCGATG
* *
80241483 CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGAAGCCGATG
80241529 CATGTCCCA
1 CATGTCCCA
80241538 AAATTCTCAT
Statistics
Matches: 195, Mismatches: 29, Indels: 47
0.72 0.11 0.17
Matches are distributed among these distances:
43 1 0.01
44 17 0.09
45 14 0.07
46 29 0.15
47 25 0.13
48 32 0.16
49 33 0.17
50 38 0.19
51 4 0.02
52 1 0.01
53 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATGGTCTTACACTGACACATCTCGAAGCCGATG
Found at i:80243421 original size:42 final size:42
Alignment explanation
Indices: 80243369--80243452 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
80243359 GTACTTGGTG
80243369 TTCGGCTTTCACTTGTTGACAAATTAGACACTTAGAAACGAA
1 TTCGGCTTTCACTTGTTGACAAATTAGACACTTAGAAACGAA
*
80243411 TTCGTCTTTCACTTGTTGACAAATTAGACACTTAGAAACGAA
1 TTCGGCTTTCACTTGTTGACAAATTAGACACTTAGAAACGAA
80243453 CTCTGAAATG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.32
Consensus pattern (42 bp):
TTCGGCTTTCACTTGTTGACAAATTAGACACTTAGAAACGAA
Found at i:80248475 original size:29 final size:29
Alignment explanation
Indices: 80248442--80248514 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
80248432 GTGACGAGAT
80248442 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* *
80248471 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
80248500 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
80248515 GAGCTCGAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:80248530 original size:29 final size:29
Alignment explanation
Indices: 80248498--80248574 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 29
80248488 GCTGGAAATA
* *
80248498 TATGGCACTAAGTGTGCGAGCTCGAAGGG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
** * * *
80248527 TATGGCACTGTGTGTGCGGGCTTAAATCG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
*
80248556 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
80248575 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.18, G:0.35, T:0.25
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAGCTCAAAGCG
Found at i:80248531 original size:58 final size:59
Alignment explanation
Indices: 80248442--80248574 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 59
80248432 GTGACGAGAT
* * *
80248442 TGGCACTAAGTGTGC-ATGCTGGAAAAATATGGCACTGAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCT-GAAATCACA
*** * * * *
80248500 TGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCTGAAATCACA
80248558 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
80248575 AATCGAGTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 4 0.06
58 58 0.92
59 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.33, T:0.25
Consensus pattern (59 bp):
TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCTGAAATCACA
Found at i:80251350 original size:45 final size:46
Alignment explanation
Indices: 80251297--80251505 Score: 157
Period size: 45 Copynumber: 4.6 Consensus size: 46
80251287 GTTTCAATGC
*
80251297 CATGTCCCAGACATGGTCTTACATTGAC-ACATCTCGTA-GCCGATG
1 CATGTCCCAGACATGGTCTTACACTGACTACATCTCG-AGGCCGATG
* * *
80251342 CATGTCCCAG--ATTGTCTTACACTGGCTTACATCTTGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGAC-TACATCTCGAGGCCGATG
* * * * *
80251387 CATGTCCCAGACAT-GTGTTACACT-AGCTCTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGA-CT-ACATCTCGAGGCCGATG
* * * *
80251433 CCATGTCCTAGACATGGTCTTACACT-AGCTTTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGA-C-TACAT-CTCGAGGCCGATG
*
80251481 CTTGTCCCAGACAT-GTCTTACACTG
1 CATGTCCCAGACATGGTCTTACACTG
80251506 GCACACAAAT
Statistics
Matches: 132, Mismatches: 20, Indels: 22
0.76 0.11 0.13
Matches are distributed among these distances:
43 13 0.10
44 1 0.01
45 35 0.27
46 32 0.24
47 27 0.20
48 22 0.17
49 2 0.02
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGACTACATCTCGAGGCCGATG
Found at i:80251431 original size:46 final size:43
Alignment explanation
Indices: 80251335--80251504 Score: 155
Period size: 46 Copynumber: 3.7 Consensus size: 43
80251325 ACATCTCGTA
* * * *
80251335 GCCGATGCATGTCCCAGA-TTGTCTTACACTGGCTTACATCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTT-C-TC-TAAT
*
80251380 GCCGATGCATGTCCCAGACATGTGTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TC-TCT-AAT
*
80251426 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTT-TCATAATGT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTCTC-TAA--T
*
80251473 GGCCGATGCTTGTCCCAGACATGTCTTACACT
1 -GCCGATGCATGTCCCAGACATGTCTTACACT
80251505 GGCACACAAA
Statistics
Matches: 106, Mismatches: 10, Indels: 17
0.80 0.08 0.13
Matches are distributed among these distances:
45 23 0.22
46 35 0.33
47 28 0.26
48 20 0.19
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (43 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTCTCTAAT
Found at i:80251477 original size:94 final size:91
Alignment explanation
Indices: 80251335--80251504 Score: 232
Period size: 94 Copynumber: 1.8 Consensus size: 91
80251325 ACATCTCGTA
* * **
80251335 GCCGATGCATGTCCCAGATTGTCTTACACTGGCTTACATCTTGAGGCCGATGCATGTCCCAGACA
1 GCCGATGCATGTCCCAGATGGTCTTACACTAGCTTACATAATGAGGCCGATGCATGTCCCAGACA
*
80251400 TGTGTTACACTAGCTCTCGTCTCAAT
66 TGTCTTACACTAGCTCTCGTCTCAAT
* * * *
80251426 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTTTCATAATGTGGCCGATGCTTGTCCCAG
1 GCCGATG-CATGTCCCAG--ATGGTCTTACACTAGCTTACATAATGAGGCCGATGCATGTCCCAG
80251491 ACATGTCTTACACT
63 ACATGTCTTACACT
80251505 GGCACACAAA
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
91 7 0.10
92 9 0.13
94 51 0.76
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (91 bp):
GCCGATGCATGTCCCAGATGGTCTTACACTAGCTTACATAATGAGGCCGATGCATGTCCCAGACA
TGTCTTACACTAGCTCTCGTCTCAAT
Found at i:80254084 original size:24 final size:24
Alignment explanation
Indices: 80254057--80254105 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
80254047 TCAATCCGGC
80254057 AAGTTAGTCATAAATTTTTTAAAT
1 AAGTTAGTCATAAATTTTTTAAAT
*
80254081 AAGTTATTCATAAATTTTTTAAAT
1 AAGTTAGTCATAAATTTTTTAAAT
80254105 A
1 A
80254106 CTTTTCCAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (24 bp):
AAGTTAGTCATAAATTTTTTAAAT
Found at i:80257055 original size:47 final size:47
Alignment explanation
Indices: 80256980--80257090 Score: 161
Period size: 47 Copynumber: 2.4 Consensus size: 47
80256970 CCCCTCGGGA
* * *
80256980 CTTATCACATT-TATACACTTTCATATTCATCGCATTGGCCATTCGGC
1 CTTATCAC-TTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
80257027 CTTATCACTTATATACACTTTGACATTCATCACATCGGCCATTCGGC
1 CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
80257074 CTTATCACATATATACA
1 CTTATCACTTATATACA
80257091 TCTCATACAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 2 0.03
47 56 0.97
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.36
Consensus pattern (47 bp):
CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:80257146 original size:46 final size:46
Alignment explanation
Indices: 80257094--80257321 Score: 429
Period size: 46 Copynumber: 5.0 Consensus size: 46
80257084 ATATACATCT
* * *
80257094 CATACATGTTTCATACTAGCCATTTGGCTTTACCACACATATATCT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
80257140 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
80257186 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
80257232 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
80257278 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
80257322 ATATTTAACT
Statistics
Matches: 179, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 179 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (46 bp):
CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
Found at i:80260072 original size:40 final size:40
Alignment explanation
Indices: 80260014--80260123 Score: 107
Period size: 40 Copynumber: 2.8 Consensus size: 40
80260004 GGATATAGCG
* * * *
80260014 ACTCACTCGATTGTCTTCGGGACATAGCCCGG-TTATAGTG
1 ACTCACACAATTGCCTTCGGGACATAGCCCGGATT-TAGTA
*
80260054 ATTCACACAATTGCCTTCGGGA-ATTAGCCCGGATTTAGTA
1 ACTCACACAATTGCCTTCGGGACA-TAGCCCGGATTTAGTA
* ** *
80260094 ACTCGCACAAAAGCCTTCGGGACTTAGCCC
1 ACTCACACAATTGCCTTCGGGACATAGCCC
80260124 AGATACCATT
Statistics
Matches: 57, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
39 1 0.02
40 54 0.95
41 2 0.04
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
ACTCACACAATTGCCTTCGGGACATAGCCCGGATTTAGTA
Found at i:80260836 original size:40 final size:40
Alignment explanation
Indices: 80260787--80261054 Score: 430
Period size: 40 Copynumber: 6.7 Consensus size: 40
80260777 CCAGCATGAT
* *
80260787 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
80260827 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * *
80260867 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
80260907 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
80260947 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *
80260987 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
80261027 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGAACTTAGCCCGGATACATC
80261055 GTCGAGACCT
Statistics
Matches: 217, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
39 3 0.01
40 214 0.99
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:80263683 original size:47 final size:47
Alignment explanation
Indices: 80263608--80263718 Score: 161
Period size: 47 Copynumber: 2.4 Consensus size: 47
80263598 CCCCTCGGGA
* * *
80263608 CTTATCACATT-TATACACTTTCATATTCATCGCATTGGCCATTCGGC
1 CTTATCAC-TTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
80263655 CTTATCACTTATATACACTTTGACATTCATCACATCGGCCATTCGGC
1 CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
80263702 CTTATCACATATATACA
1 CTTATCACTTATATACA
80263719 TCTCATACAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 2 0.03
47 56 0.97
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.36
Consensus pattern (47 bp):
CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:80263774 original size:46 final size:46
Alignment explanation
Indices: 80263722--80263949 Score: 429
Period size: 46 Copynumber: 5.0 Consensus size: 46
80263712 ATATACATCT
* * *
80263722 CATACATGTTTCATACTAGCCATTTGGCTTTACCACACATATATCT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
80263768 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
80263814 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
80263860 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
80263906 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
80263950 ATATTTAACT
Statistics
Matches: 179, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 179 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (46 bp):
CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
Found at i:80268647 original size:45 final size:45
Alignment explanation
Indices: 80268594--80268809 Score: 222
Period size: 45 Copynumber: 4.7 Consensus size: 45
80268584 CAAGTAAGCT
* *
80268594 AGTGTAAGACCATGTTGGACAAGGCATCGGCGTGGATTGTGAGTC
1 AGTGTAAGACCATGTTGGACATGGCATCGGCGTAGATTGTGAGTC
* * *
80268639 ATTGTAAGACCATGTTGGACATGGCATTGGCATAGATTGTGA-TCC
1 AGTGTAAGACCATGTTGGACATGGCATCGGCGTAGATTGTGAGT-C
* *
80268684 AGTGTAAGACCATGTTGGACATGGCATCGGCGTTGATTGTAAG-C
1 AGTGTAAGACCATGTTGGACATGGCATCGGCGTAGATTGTGAGTC
* * * *
80268728 TAGTGTAAGACCATGTTTGGGACATGGCATCGACCTCGGCA-TGTGAGCC
1 -AGTGTAAGACCATG-TT-GGACATGGCATCGGCGT-AG-ATTGTGAGTC
* *
80268777 AGTCTAAGACCATGTCTGGGAGATGGCATCGGC
1 AGTGTAAGACCATGT-T-GGACATGGCATCGGC
80268810 AATTCACCCT
Statistics
Matches: 145, Mismatches: 17, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
44 2 0.01
45 89 0.61
46 2 0.01
47 16 0.11
48 34 0.23
49 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (45 bp):
AGTGTAAGACCATGTTGGACATGGCATCGGCGTAGATTGTGAGTC
Found at i:80277891 original size:42 final size:41
Alignment explanation
Indices: 80277832--80277949 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 41
80277822 TAGGGTTATT
80277832 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATT-CGTGTAAGACCATATCTGGGATATGGCATCGATA
* * *
80277874 TGAGACTTCGTGTAAGACCAAAGCTGGGCTATTGGCATCGATA
1 TGAGA-TTCGTGTAAGACCATATCTGGGATA-TGGCATCGATA
* * * *
80277917 TGAGATCCCATATAAGACCATATCTAGGATATG
1 TGAGAT-TCGTGTAAGACCATATCTGGGATATG
80277950 ACATTGGTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
42 28 0.44
43 35 0.56
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (41 bp):
TGAGATTCGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:80284701 original size:42 final size:43
Alignment explanation
Indices: 80284591--80284754 Score: 147
Period size: 43 Copynumber: 3.8 Consensus size: 43
80284581 CATAGGATTT
* * * * *
80284591 TCGATATGTGATTTCGTGTAAGATCACGTCT-AGA-ATGTTTGCA
1 TCGATATTTGATTTCGTGTAAGACCATGTCTGGGACA-G-TAGCA
* * *
80284634 TCGAT-TTGAGATTTACGTGTAAGACCATGTTTGGGACATTAGCA
1 TCGATATT-TGATTT-CGTGTAAGACCATGTCTGGGACAGTAGCA
* *
80284678 TCG-TATTTGATTTCGTGTAAGACCTTGTCTGGGACAGTGGCA
1 TCGATATTTGATTTCGTGTAAGACCATGTCTGGGACAGTAGCA
* * *
80284720 TCGATATTTGATTACATGTAAGACCACGTCTGGGA
1 TCGATATTTGATTTCGTGTAAGACCATGTCTGGGA
80284755 TGTTGGCATT
Statistics
Matches: 98, Mismatches: 17, Indels: 12
0.77 0.13 0.09
Matches are distributed among these distances:
42 29 0.30
43 43 0.44
44 23 0.23
45 2 0.02
46 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (43 bp):
TCGATATTTGATTTCGTGTAAGACCATGTCTGGGACAGTAGCA
Found at i:80287325 original size:27 final size:27
Alignment explanation
Indices: 80287011--80287324 Score: 425
Period size: 27 Copynumber: 11.6 Consensus size: 27
80287001 AAAGTACTCC
80287011 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
80287038 C-AGGTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
80287065 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
80287092 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
80287119 C-AGTTTATAGAATTTACTATTTTACCCT
1 CGA-TTTACAGAA-TTACCGTTTTACCCT
*
80287147 CGATTTACAGAATTACCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
80287174 CAATTTACATAATTACCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* *
80287201 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
80287228 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
80287255 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
80287282 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
80287309 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
80287325 TAAAATACCC
Statistics
Matches: 254, Mismatches: 28, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
26 2 0.01
27 228 0.90
28 23 0.09
29 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.39
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:80288663 original size:9 final size:9
Alignment explanation
Indices: 80288651--80288707 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
80288641 TTTGATAAAC
80288651 ATGATATGT
1 ATGATATGT
*
80288660 ATGATATGCAC
1 ATGATATG--T
*
80288671 ATGACATGT
1 ATGATATGT
*
80288680 ATGATATGC
1 ATGATATGT
80288689 ACGTGATATGT
1 A--TGATATGT
80288700 ATGATATG
1 ATGATATG
80288708 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.33, C:0.09, G:0.23, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:80288674 original size:20 final size:20
Alignment explanation
Indices: 80288649--80288719 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
80288639 ATTTTGATAA
80288649 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
80288669 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
80288689 ACGTGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
80288709 ACATGAGATGT
1 ACATGATATGT
80288720 TCATAAATGC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:80288791 original size:24 final size:24
Alignment explanation
Indices: 80288764--80288931 Score: 250
Period size: 24 Copynumber: 7.0 Consensus size: 24
80288754 GGAGGAAGTG
*
80288764 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
80288788 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
80288812 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
80288836 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
80288860 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
80288883 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
80288907 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
80288932 ATGATAAAGC
Statistics
Matches: 135, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
23 22 0.16
24 102 0.76
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:80288888 original size:47 final size:47
Alignment explanation
Indices: 80288766--80288910 Score: 245
Period size: 47 Copynumber: 3.1 Consensus size: 47
80288756 AGGAAGTGCA
* *
80288766 AAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT-T
80288814 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
* *
80288861 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
80288908 AAA
1 AAA
80288911 AGAGGCTAGG
Statistics
Matches: 93, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
47 48 0.52
48 45 0.48
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:80295523 original size:26 final size:26
Alignment explanation
Indices: 80295489--80295540 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
80295479 TAAGCTAATT
80295489 TTTTATTATAGATCAAGAAGAACAAA
1 TTTTATTATAGATCAAGAAGAACAAA
80295515 TTTTATTATAGATCAAGAAGAACAAA
1 TTTTATTATAGATCAAGAAGAACAAA
80295541 ATCCGGAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.31
Consensus pattern (26 bp):
TTTTATTATAGATCAAGAAGAACAAA
Found at i:80295912 original size:55 final size:53
Alignment explanation
Indices: 80295804--80296050 Score: 195
Period size: 55 Copynumber: 4.7 Consensus size: 53
80295794 ATTAGGGTTC
* * * ** *
80295804 AAGGAGACCATGTAAGACCATG-CTAAGGCATGGTAATTGGCAAGGTTTC-TAAGGT
1 AAGGATACCATGTAAGACCATGTC-AAGACATGG-CATTGATAA-G-TTCATAAGGA
* *
80295859 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-C-ATAAGG-A
* * * * *
80295915 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATT-ATTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGA-TAAGTTCATAAGGA
* * *
80295967 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCA--A
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGA
* * *
80296016 AAGGATACCACGTAAGACCATGACAAGTCATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
80296051 ATGGTAAGGT
Statistics
Matches: 159, Mismatches: 25, Indels: 22
0.77 0.12 0.11
Matches are distributed among these distances:
49 32 0.20
51 2 0.01
52 6 0.04
53 41 0.26
54 8 0.05
55 65 0.41
56 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGA
Found at i:80296010 original size:108 final size:109
Alignment explanation
Indices: 80295811--80296011 Score: 275
Period size: 108 Copynumber: 1.8 Consensus size: 109
80295801 TTCAAGGAGA
* * *
80295811 CCATGTAAGACCATGCTAAGGCATGGTAATTGGCAAGGTTTCTAAGGTAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGTAATTGG-AAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
80295876 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
65 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
80295921 CCATGTAAGACCATGCCAAGGCATGGCATTATT-G-A-G-TTCATAAGGCAAGGATACCATGTAA
1 CCATGTAAGACCATGCCAAGGCATGG--TAATTGGAAGGTTTC-TAAGGCAAGGAAACCATGTAA
*
80295982 GACCATGTCAAGACATGGCAATGGTAAGTT
63 GACCATGTCAAGACATGGCAATGATAAGTT
80296012 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 7, Indels: 8
0.84 0.07 0.08
Matches are distributed among these distances:
107 3 0.04
108 47 0.58
109 1 0.01
110 25 0.31
111 1 0.01
112 4 0.05
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (109 bp):
CCATGTAAGACCATGCCAAGGCATGGTAATTGGAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:80296276 original size:16 final size:16
Alignment explanation
Indices: 80296255--80296285 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80296245 ATAAATTTGA
80296255 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
80296271 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
80296286 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:80297954 original size:28 final size:28
Alignment explanation
Indices: 80297922--80297977 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
80297912 AAGTAACAGC
* *
80297922 ACAGTGTGGGCCTTAGCCCAATATAGTA
1 ACAGTGTGGGCCTAAGCCCAATACAGTA
80297950 ACAGTGTGGGCCTAAGCCCAATACAGTA
1 ACAGTGTGGGCCTAAGCCCAATACAGTA
80297978 TCAAAATCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.21
Consensus pattern (28 bp):
ACAGTGTGGGCCTAAGCCCAATACAGTA
Found at i:80298906 original size:27 final size:27
Alignment explanation
Indices: 80298780--80298969 Score: 177
Period size: 27 Copynumber: 7.0 Consensus size: 27
80298770 TTCACCTTAC
* *
80298780 AGGGTTATTTCGATAATTTTACACTAC-A
1 AGGG-TATTTCGGTAATTTTACA-AACTA
* *
80298808 AGGGTATTTTGGTAATTTTACAAA-TCG
1 AGGGTATTTCGGTAATTTTACAAACT-A
* ** *
80298835 AGGGTATTTTGGTAATTTTACAATTTG
1 AGGGTATTTCGGTAATTTTACAAACTA
80298862 AGGGTATTTCGGTAATTTTACAAACTA
1 AGGGTATTTCGGTAATTTTACAAACTA
* * *
80298889 AGGGTATTTTGGTGATTTTACAAACTG
1 AGGGTATTTCGGTAATTTTACAAACTA
* * * * *
80298916 GGGGCATTTCGATTATTTTACAAACCA
1 AGGGTATTTCGGTAATTTTACAAACTA
* *
80298943 GGGGCATTTCGGTAATTTTACAAACTA
1 AGGGTATTTCGGTAATTTTACAAACTA
80298970 TGGTCTGAAC
Statistics
Matches: 137, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
26 1 0.01
27 131 0.96
28 5 0.04
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAACTA
Found at i:80298934 original size:81 final size:80
Alignment explanation
Indices: 80298779--80298969 Score: 215
Period size: 81 Copynumber: 2.4 Consensus size: 80
80298769 TTTCACCTTA
* * *
80298779 CAGGGTTATTTCGATAATTTTACACTAC-AAGGGTATTTTGGTAATTTTACAAATCGAGGGTATT
1 CAGGG-TATTTCGGTAATTTTACA-AACTAAGGGTATTTTGGTAATTTTACAAATCGAGGGCATT
* * **
80298843 TTGGTAATTTTACAATTT
64 TCGATAATTTTACAA-AC
* * *
80298861 GAGGGTATTTCGGTAATTTTACAAACTAAGGGTATTTTGGTGATTTTACAAA-CTGGGGGCATTT
1 CAGGGTATTTCGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAATC-GAGGGCATTT
*
80298925 CGATTATTTTACAAAC
65 CGATAATTTTACAAAC
*
80298941 CAGGGGCATTTCGGTAATTTTACAAACTA
1 CA-GGGTATTTCGGTAATTTTACAAACTA
80298970 TGGTCTGAAC
Statistics
Matches: 93, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 4 0.04
81 85 0.91
82 4 0.04
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (80 bp):
CAGGGTATTTCGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAATCGAGGGCATTTC
GATAATTTTACAAAC
Found at i:80305343 original size:29 final size:29
Alignment explanation
Indices: 80305310--80305403 Score: 143
Period size: 29 Copynumber: 3.2 Consensus size: 29
80305300 GTGACGAGAT
*
80305310 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
80305339 TGGCACTAAGTGTGCATGCTGGAAATATT
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* *
80305368 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
80305397 CGGCACT
1 TGGCACT
80305404 GGGTGTGCGA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 59 1.00
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:80319027 original size:29 final size:29
Alignment explanation
Indices: 80318994--80319096 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
80318984 GTGACGAGAT
80318994 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
80319023 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
80319052 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
80319081 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
80319097 AGTTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:80319114 original size:29 final size:29
Alignment explanation
Indices: 80319082--80319156 Score: 141
Period size: 29 Copynumber: 2.6 Consensus size: 29
80319072 GGAAAAATAC
*
80319082 GGCACTGGGTGTGCGAGTTCGGAGGGTAT
1 GGCACTGTGTGTGCGAGTTCGGAGGGTAT
80319111 GGCACTGTGTGTGCGAGTTCGGAGGGTAT
1 GGCACTGTGTGTGCGAGTTCGGAGGGTAT
80319140 GGCACTGTGTGTGCGAG
1 GGCACTGTGTGTGCGAG
80319157 CTTAAATTAC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.13, C:0.15, G:0.47, T:0.25
Consensus pattern (29 bp):
GGCACTGTGTGTGCGAGTTCGGAGGGTAT
Found at i:80324242 original size:43 final size:42
Alignment explanation
Indices: 80324117--80324267 Score: 137
Period size: 43 Copynumber: 3.5 Consensus size: 42
80324107 TGAAAAGCTC
* *
80324117 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAA
1 ATACAATGCCAATGTCCCAGACG-GGTCTTACACGTAAATCAA
* * * *
80324159 ATATCGATGCCAGTGTCCCCGACAGGGTCTTACAC-AAAATCAA
1 ATA-CAATGCCAATGTCCCAGAC-GGGTCTTACACGTAAATCAA
* *
80324202 ATACAATGCCAATGTCTCAAACGCGGTCTTACACGTAAATCATA
1 ATACAATGCCAATGTCCCAGACG-GGTCTTACACGTAAATCA-A
* *
80324246 AGT-CGATGCCAACGTCCCAGAC
1 A-TACAATGCCAATGTCCCAGAC
80324268 ATCGTCTTAC
Statistics
Matches: 86, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.31
43 39 0.45
44 18 0.21
45 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (42 bp):
ATACAATGCCAATGTCCCAGACGGGTCTTACACGTAAATCAA
Found at i:80324275 original size:86 final size:85
Alignment explanation
Indices: 80324117--80324279 Score: 202
Period size: 86 Copynumber: 1.9 Consensus size: 85
80324107 TGAAAAGCTC
* * * ** *
80324117 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCAGTGTCCCCGAC
1 ATACAATGCCAACGTCCCAAACGCGGTCTTACACGTAATCAAATATCGATGCCAACGTCCCAGAC
*
80324182 AGGGTCTTACACAAAATCAA
66 AGCGTCTTACACAAAATCAA
* * *
80324202 ATACAATGCCAATGTCTCAAACGCGGTCTTACACGTAAATCATAA-GTCGATGCCAACGTCCCAG
1 ATACAATGCCAACGTCCCAAACGCGGTCTTACACGT-AATCA-AATATCGATGCCAACGTCCCAG
*
80324266 ACATCGTCTTACAC
64 ACAGCGTCTTACAC
80324280 GAGAACACAT
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
85 31 0.48
86 32 0.49
87 2 0.03
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.23
Consensus pattern (85 bp):
ATACAATGCCAACGTCCCAAACGCGGTCTTACACGTAATCAAATATCGATGCCAACGTCCCAGAC
AGCGTCTTACACAAAATCAA
Found at i:80328776 original size:18 final size:16
Alignment explanation
Indices: 80328744--80328782 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
80328734 TTAGTAAATA
80328744 AATAATAAAATGTTAT
1 AATAATAAAATGTTAT
*
80328760 TATAATAATATATGTTAT
1 AATAATAA-A-ATGTTAT
80328778 AATAA
1 AATAA
80328783 AATTAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 7 0.37
17 1 0.05
18 11 0.58
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (16 bp):
AATAATAAAATGTTAT
Found at i:80329879 original size:70 final size:70
Alignment explanation
Indices: 80329766--80329913 Score: 233
Period size: 70 Copynumber: 2.1 Consensus size: 70
80329756 TAGTTTAGTA
* * * * *
80329766 CTAATTAATATGTTGTTGTTATACTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTG
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAATTCATGGCG
80329831 CTTAG
66 CTTAG
*
80329836 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGCG
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAATTCATGGCG
*
80329901 TTTAG
66 CTTAG
80329906 CTAATTAA
1 CTAATTAA
80329914 AATGTGTTGT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAATTCATGGCG
CTTAG
Found at i:80335829 original size:43 final size:43
Alignment explanation
Indices: 80335770--80335851 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
80335760 GTTTGCATCC
* *
80335770 ATTTGATTTCGTGTAAGACC-CTGTCTGGGACAGTGGCATCGAT
1 ATTTGATTACATGTAAGACCAC-GTCTGGGACAGTGGCATCGAT
*
80335813 ATTTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
1 ATTTGATTACATGTAAGACCACGTCTGGGACAGTGGCAT
80335852 TGTACGAGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
43 34 0.97
44 1 0.03
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
ATTTGATTACATGTAAGACCACGTCTGGGACAGTGGCATCGAT
Found at i:80336136 original size:19 final size:22
Alignment explanation
Indices: 80336096--80336137 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
80336086 CCTAAATTTA
80336096 AAACCCAAGATATTACAAACCC
1 AAACCCAAGATATTACAAACCC
80336118 AAACCCAA-AT-TTA-AAACCC
1 AAACCCAAGATATTACAAACCC
80336137 A
1 A
80336138 TTACAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 3 0.15
21 2 0.10
22 8 0.40
ACGTcount: A:0.52, C:0.31, G:0.02, T:0.14
Consensus pattern (22 bp):
AAACCCAAGATATTACAAACCC
Found at i:80337665 original size:46 final size:46
Alignment explanation
Indices: 80337613--80337783 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
80337603 TGGTTGAGCA
*
80337613 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
80337659 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80337704 CATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
80337751 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
80337784 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 13, Indels: 21
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 19 0.19
45 15 0.15
46 34 0.33
47 23 0.23
49 3 0.03
50 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Done.