Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 260 of 410
Found at i:80343535 original size:44 final size:43
Alignment explanation
Indices: 80343479--80343687 Score: 154
Period size: 44 Copynumber: 4.7 Consensus size: 43
80343469 CCACCAAACT
*
80343479 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATA
1 TTAA-CCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATC
* * * * *** * *
80343523 TTATCGCCCTAAGCAGTAGGGAAAC-AGATCAAAGGCGA-CGAGC
1 TTAAC-CCCTAAGCAGTAGGGTAACAAGCT-GAAGTTTATAGATC
* *
80343566 TTTAAATCCCTAAGCAGTAGGGTAACAAGCTGATGTTTATAAGATC
1 -TT-AACCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTAT-AGATC
* * * * *
80343612 TTATCACCCTAAGCAGTAGGGTAGCAAGCCGAA-TTTACAGACC
1 TTAAC-CCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATC
* *
80343655 TTGAACCCCTAAGCAGTAGGGTAATAGGCTGAA
1 TT-AACCCCTAAGCAGTAGGGTAACAAGCTGAA
80343688 AATCAGATGC
Statistics
Matches: 123, Mismatches: 33, Indels: 19
0.70 0.19 0.11
Matches are distributed among these distances:
43 35 0.28
44 55 0.45
45 30 0.24
46 3 0.02
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.22
Consensus pattern (43 bp):
TTAACCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATC
Found at i:80343829 original size:44 final size:44
Alignment explanation
Indices: 80343788--80343931 Score: 179
Period size: 44 Copynumber: 3.3 Consensus size: 44
80343778 ATGTCTTATC
*
80343788 CCCCTAAGTAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAA
1 CCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAA
* * * * *
80343832 CCCCTAAGCAGTAG-GGTAACAGA-CCAA-ATTGCA-GATCTTAAA
1 CCCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CGAAGGGTCTTAAA
*
80343874 CCCCTAAGCAGTAGTGGAGCAGATTGAAGACGAAGGGTCTTAAA
1 CCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAA
80343918 CCCCTAAGCAGTAG
1 CCCCTAAGCAGTAG
80343932 GGTAACAGAC
Statistics
Matches: 82, Mismatches: 12, Indels: 12
0.77 0.11 0.11
Matches are distributed among these distances:
42 28 0.34
43 13 0.16
44 41 0.50
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.18
Consensus pattern (44 bp):
CCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAA
Found at i:80343879 original size:42 final size:42
Alignment explanation
Indices: 80343825--80343957 Score: 153
Period size: 42 Copynumber: 3.1 Consensus size: 42
80343815 AGACGAAGGG
*
80343825 TCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGA
1 TCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTGAAGA
* ** * *
80343867 TCTTAAACCCCTAAGCAGTAGTGG-AGCAGATTGAAGA-CGAAGGG
1 TCTTAAACCCCTAAGCAGTAG-GGTAACAGA-CCAA-ATTGAA-GA
*
80343911 TCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTGTAGA
1 TCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTGAAGA
80343953 TCTTA
1 TCTTA
80343958 TTTCCCTAAG
Statistics
Matches: 73, Mismatches: 12, Indels: 12
0.75 0.12 0.12
Matches are distributed among these distances:
42 33 0.45
43 12 0.16
44 28 0.38
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (42 bp):
TCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTGAAGA
Found at i:80343888 original size:86 final size:86
Alignment explanation
Indices: 80343788--80343989 Score: 341
Period size: 86 Copynumber: 2.3 Consensus size: 86
80343778 ATGTCTTATC
*
80343788 CCCCTAAGTAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACA
1 CCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACA
80343853 GACCAAATTGCAGATCTTAAA
66 GACCAAATTGCAGATCTTAAA
*
80343874 CCCCTAAGCAGTAGTGGAGCAGATTGAAGACGAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACA
1 CCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACA
* **
80343939 GACCAAATTGTAGATCTTATT
66 GACCAAATTGCAGATCTTAAA
* *
80343960 TCCCTAAGCTGTAGTGGAGCAGATCGAAGA
1 CCCCTAAGCAGTAGTGGAGCAGATCGAAGA
80343990 TTGACAAACC
Statistics
Matches: 108, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
86 108 1.00
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.20
Consensus pattern (86 bp):
CCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACA
GACCAAATTGCAGATCTTAAA
Found at i:80344827 original size:2 final size:2
Alignment explanation
Indices: 80344822--80344848 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
80344812 ACACACACAC
80344822 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
80344849 CGCTTTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:80345496 original size:25 final size:22
Alignment explanation
Indices: 80345452--80345503 Score: 59
Period size: 25 Copynumber: 2.2 Consensus size: 22
80345442 TTACTTTTCC
*
80345452 ATATTATTCCAATTTAATTTTA
1 ATATTATTACAATTTAATTTTA
80345474 ATATTATTTACAATATTATATTTTA
1 ATATTA-TTACAAT-TTA-ATTTTA
*
80345499 TTATT
1 ATATT
80345504 GTTGTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 6 0.24
23 6 0.24
24 3 0.12
25 10 0.40
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.58
Consensus pattern (22 bp):
ATATTATTACAATTTAATTTTA
Found at i:80345592 original size:15 final size:15
Alignment explanation
Indices: 80345572--80345606 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
80345562 TGTTATAAAA
80345572 TATTATTAATAGTT-T
1 TATTATTAATA-TTCT
80345587 TATTATTAATATTCT
1 TATTATTAATATTCT
80345602 TATTA
1 TATTA
80345607 ATACACATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 2 0.11
15 17 0.89
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (15 bp):
TATTATTAATATTCT
Found at i:80345980 original size:27 final size:27
Alignment explanation
Indices: 80345950--80346023 Score: 71
Period size: 31 Copynumber: 2.6 Consensus size: 27
80345940 ATTATTATTG
80345950 TTAATATA-AATATTATATATACATCTT
1 TTAATATATAATATTATATATACAT-TT
*
80345977 TTAACATCATATAA-ATATATATATATATTT
1 TT-A-AT-ATATAATAT-TATATATACATTT
*
80346007 TTAATATATCATATTAT
1 TTAATATATAATATTAT
80346024 TGTTATGTCT
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
27 10 0.26
28 5 0.13
29 3 0.08
30 9 0.23
31 12 0.31
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.49
Consensus pattern (27 bp):
TTAATATATAATATTATATATACATTT
Found at i:80349526 original size:46 final size:46
Alignment explanation
Indices: 80349476--80349741 Score: 252
Period size: 46 Copynumber: 5.7 Consensus size: 46
80349466 TGGTTGAGCA
80349476 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * * *
80349522 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ATG
*
80349569 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * * * * * *
80349615 TCCAAACTCATTGAGTTGAGCCCGAGTTC-GTGAAATGTA-ACTAGGTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ATG
*
80349662 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80349708 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
80349742 GGGGCGGGTT
Statistics
Matches: 170, Mismatches: 40, Indels: 20
0.74 0.17 0.09
Matches are distributed among these distances:
45 2 0.01
46 98 0.58
47 68 0.40
48 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80349596 original size:47 final size:47
Alignment explanation
Indices: 80349522--80349690 Score: 200
Period size: 47 Copynumber: 3.6 Consensus size: 47
80349512 GATGCGAATG
80349522 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGTA
* * * * * * * *
80349569 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACT--TATGGATGCGA-ATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGTA
* * *
80349615 TCCAAACTCATTGAGTTGAGCCCGAGTTCGTGAAATGTAACTAGGTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGTA
80349662 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
80349691 ACTTATGGAT
Statistics
Matches: 95, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
45 1 0.01
46 32 0.34
47 61 0.64
48 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGTA
Found at i:80349634 original size:93 final size:93
Alignment explanation
Indices: 80349475--80349736 Score: 452
Period size: 93 Copynumber: 2.8 Consensus size: 93
80349465 ATGGTTGAGC
80349475 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
80349540 AGTCCGAGTTCGTGAAATGTAACTAGGT
66 AGTCCGAGTTCGTGAAATGTAACTAGGT
* * *
80349568 ATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCAAACTCATTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
*
80349633 AGCCCGAGTTCGTGAAATGTAACTAGGT
66 AGTCCGAGTTCGTGAAATGTAACTAGGT
* * *
80349661 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
*
80349726 AGTCCAAGTTC
66 AGTCCGAGTTC
80349737 ACTTAGGGGC
Statistics
Matches: 157, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 157 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
AGTCCGAGTTCGTGAAATGTAACTAGGT
Found at i:80353168 original size:40 final size:40
Alignment explanation
Indices: 80353008--80353171 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
80352998 TGAATGATAC
* * * *
80353008 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTAAAT
* *
80353048 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTAAAT
* * **
80353088 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTAAAT
* * * *
80353128 CCGGGTTAAGACCCGAAGGAAATTGTGCTTGTGGTTAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTAAAT
80353168 CCGG
1 CCGG
80353172 TTAAATCCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.92
41 5 0.05
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTAAAT
Found at i:80356142 original size:40 final size:39
Alignment explanation
Indices: 80356090--80356207 Score: 134
Period size: 39 Copynumber: 3.0 Consensus size: 39
80356080 TCCAATTTCT
* *
80356090 AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTACC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATAT-TAATACC
* * *
80356130 AGCACTAGGCCTGC-GGACTATAAGTCCGGATA-TAATACC
1 AGCACTAAGCCTGCGGGA-TTTAA-CCCGGATATTAATACC
*
80356169 AGCATTAAGCCTGCGGGATTTAACCCGGATA-TAATACC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATATTAATACC
80356207 A
1 A
80356208 CATAAATTTT
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
38 15 0.23
39 25 0.38
40 19 0.29
41 7 0.11
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.22
Consensus pattern (39 bp):
AGCACTAAGCCTGCGGGATTTAACCCGGATATTAATACC
Found at i:80360102 original size:127 final size:126
Alignment explanation
Indices: 80359861--80360178 Score: 402
Period size: 127 Copynumber: 2.5 Consensus size: 126
80359851 GAAAATTTCA
** * * *
80359861 TAAAACCAAGGCAATACTTAATGTTTGGAAATTCGGGGAATAGTGCCTCATCGCGCTGGGTTTCG
1 TAAAA-CAAGGCAATGTTTAATGTTTGGAAATTCGGGGAATCGTCCCT-ATCGTGCTGGGTTTCG
** * *
80359926 ATTTCCCGTTTGTTCAAAATAATTGAATATTCCTTTAGAATTTTACTCGTGTTTTCTAAATCC
64 ATTTCCCGTTTGCCCAAAATAATCGAATATTCCTTTAGAATTTCACTCGTGTTTTCTAAATCC
* *
80359989 TAAAACAAGGCAATGTTTGATATTTGGAAATTCGGGGAATCGTACCCTATCGTGCTGGGTTTCGA
1 TAAAACAAGGCAATGTTTAATGTTTGGAAATTCGGGGAATCGT-CCCTATCGTGCTGGGTTTCGA
* * * * *
80360054 TTTCCCGTTTGCCCAAAATAGTCGAATATTTCTTTAGGATTTCCCTCGTGTTTTCTAAATTC
65 TTTCCCGTTTGCCCAAAATAATCGAATATTCCTTTAGAATTTCACTCGTGTTTTCTAAATCC
* * * * * *
80360116 TAAGATAAGGCAATGTTCAATGTTTGGAAATTTGGGGAATCGTGCCCCACCGTGCTGGGTTTC
1 TAAAACAAGGCAATGTTTAATGTTTGGAAATTCGGGGAATCGT-CCCTATCGTGCTGGGTTTC
80360179 AGTTTTTCGT
Statistics
Matches: 164, Mismatches: 25, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
127 156 0.95
128 8 0.05
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (126 bp):
TAAAACAAGGCAATGTTTAATGTTTGGAAATTCGGGGAATCGTCCCTATCGTGCTGGGTTTCGAT
TTCCCGTTTGCCCAAAATAATCGAATATTCCTTTAGAATTTCACTCGTGTTTTCTAAATCC
Found at i:80362721 original size:34 final size:34
Alignment explanation
Indices: 80362683--80362753 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
80362673 GTAAACTATA
80362683 TTGGATGGATTTAATAATGAACTAATTGTGGATG
1 TTGGATGGATTTAATAATGAACTAATTGTGGATG
80362717 TTGGATGGATTTAATAATGAACTAATTGTGGATG
1 TTGGATGGATTTAATAATGAACTAATTGTGGATG
80362751 TTG
1 TTG
80362754 TTGCTATAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.31, C:0.03, G:0.27, T:0.39
Consensus pattern (34 bp):
TTGGATGGATTTAATAATGAACTAATTGTGGATG
Found at i:80365153 original size:16 final size:16
Alignment explanation
Indices: 80365129--80365171 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
80365119 CTTTTAAAAG
80365129 TTTTAAAATAACATAA
1 TTTTAAAATAACATAA
* **
80365145 TTTTTAAATTTCATAA
1 TTTTAAAATAACATAA
80365161 -TTTAAAATAAC
1 TTTTAAAATAAC
80365172 TGTTAAAAGT
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (16 bp):
TTTTAAAATAACATAA
Found at i:80365466 original size:24 final size:25
Alignment explanation
Indices: 80365432--80365478 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
80365422 CCCACAAGTA
80365432 AAAAAACTAATATA-TATGATGTGT
1 AAAAAACTAATATAGTATGATGTGT
* *
80365456 AAAAAATTAATATAGTTTGATGT
1 AAAAAACTAATATAGTATGATGT
80365479 TAGTAAAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (25 bp):
AAAAAACTAATATAGTATGATGTGT
Found at i:80367326 original size:24 final size:23
Alignment explanation
Indices: 80367294--80367344 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 23
80367284 TTGGTTTCAA
*
80367294 TTATTATTTTAATATGTTTAAT-TT
1 TTATTATTTT-AT-TATTTAATATT
80367318 TTATTATTTTATTATTTAATATT
1 TTATTATTTTATTATTTAATATT
80367341 TTAT
1 TTAT
80367345 ATATAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 7 0.28
23 8 0.32
24 10 0.40
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (23 bp):
TTATTATTTTATTATTTAATATT
Found at i:80367329 original size:8 final size:8
Alignment explanation
Indices: 80367294--80367344 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
80367284 TTGGTTTCAA
80367294 TTATTATT
1 TTATTATT
*
80367302 TTAATATGT
1 TTATTAT-T
*
80367311 TTAAT-TT
1 TTATTATT
80367318 TTATTATT
1 TTATTATT
80367326 TTATTA-T
1 TTATTATT
*
80367333 TTAATATT
1 TTATTATT
80367341 TTAT
1 TTAT
80367345 ATATAAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
7 11 0.31
8 19 0.53
9 6 0.17
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (8 bp):
TTATTATT
Found at i:80367344 original size:15 final size:15
Alignment explanation
Indices: 80367294--80367344 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
80367284 TTGGTTTCAA
80367294 TTATTATTTTAATATGT
1 TTATTA-TTTAATAT-T
*
80367311 TTAATT-TTTATTATT
1 TT-ATTATTTAATATT
80367326 TTATTATTTAATATT
1 TTATTATTTAATATT
80367341 TTAT
1 TTAT
80367345 ATATAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
14 3 0.10
15 15 0.50
16 7 0.23
17 2 0.07
18 3 0.10
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (15 bp):
TTATTATTTAATATT
Found at i:80374838 original size:19 final size:19
Alignment explanation
Indices: 80374814--80374851 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
80374804 AAAGTTAATA
80374814 ACAAATTTGATTACGGTGG
1 ACAAATTTGATTACGGTGG
*
80374833 ACAAATTTGATTATGGTGG
1 ACAAATTTGATTACGGTGG
80374852 GTGACAGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.34
Consensus pattern (19 bp):
ACAAATTTGATTACGGTGG
Found at i:80376839 original size:29 final size:27
Alignment explanation
Indices: 80376803--80376870 Score: 68
Period size: 28 Copynumber: 2.4 Consensus size: 27
80376793 TTGAATACAT
80376803 AAATTATTTATTTTAGAAA-AATTTTAA
1 AAATTATTTATTTTA-AAATAATTTTAA
80376830 GAAATCTA-TTATTTTAAAACTTAATTTTAA
1 -AAAT-TATTTATTTTAAAA--TAATTTTAA
80376860 AAATATATTTA
1 AAAT-TATTTA
80376871 CCAACAGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
27 3 0.09
28 12 0.35
29 8 0.24
30 11 0.32
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (27 bp):
AAATTATTTATTTTAAAATAATTTTAA
Found at i:80379548 original size:3 final size:3
Alignment explanation
Indices: 80379535--80379615 Score: 51
Period size: 3 Copynumber: 27.0 Consensus size: 3
80379525 TACTTGTAAC
* * *
80379535 ATT ATTT ATT ATT A-T ATTT ACT ATT ATT ATT ATT AAT ATT ACT ATT
1 ATT A-TT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT
** * *
80379581 A-T ATTT ATT AAC A-T ATT ATC ATT ATT TTT ATT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
80379616 CATATTAATA
Statistics
Matches: 59, Mismatches: 13, Indels: 12
0.70 0.15 0.14
Matches are distributed among these distances:
2 5 0.08
3 47 0.80
4 7 0.12
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:80379554 original size:12 final size:12
Alignment explanation
Indices: 80379537--80379621 Score: 63
Period size: 12 Copynumber: 7.3 Consensus size: 12
80379527 CTTGTAACAT
80379537 TATTTATTATTA
1 TATTTATTATTA
*
80379549 TATTTACTA-T-
1 TATTTATTATTA
80379559 TA-TTATTATTA
1 TATTTATTATTA
*
80379570 -ATATTACTATTA
1 TAT-TTATTATTA
**
80379582 TATTTATTAACA
1 TATTTATTATTA
*
80379594 TA-TTATCATTA
1 TATTTATTATTA
*
80379605 TTTTTATTATTCA
1 TATTTATTATT-A
80379618 TATT
1 TATT
80379622 AATATATATA
Statistics
Matches: 54, Mismatches: 12, Indels: 13
0.68 0.15 0.16
Matches are distributed among these distances:
9 5 0.09
10 4 0.07
11 8 0.15
12 31 0.57
13 6 0.11
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (12 bp):
TATTTATTATTA
Found at i:80379566 original size:21 final size:21
Alignment explanation
Indices: 80379535--80379613 Score: 74
Period size: 21 Copynumber: 3.6 Consensus size: 21
80379525 TACTTGTAAC
80379535 ATTATTTATTATT-ATATTTACT
1 ATTA-TTATTATTAATA-TTACT
80379557 ATTATTATTATTAATATTACT
1 ATTATTATTATTAATATTACT
80379578 ATTA-TATTTATTAACATATTA-T
1 ATTATTA-TTATT-A-ATATTACT
*
80379600 CATTATTTTTATTA
1 -ATTATTATTATTA
80379614 TTCATATTAA
Statistics
Matches: 50, Mismatches: 1, Indels: 12
0.79 0.02 0.19
Matches are distributed among these distances:
20 2 0.04
21 22 0.44
22 10 0.20
23 15 0.30
24 1 0.02
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTATTATTATTAATATTACT
Found at i:80390982 original size:27 final size:28
Alignment explanation
Indices: 80390926--80390995 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
80390916 AAACTTGTAC
80390926 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
80390954 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
80390981 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
80390996 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:80391006 original size:27 final size:27
Alignment explanation
Indices: 80390926--80391007 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
80390916 AAACTTGTAC
* *
80390926 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
80390954 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
80390981 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
80391008 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:80392764 original size:44 final size:45
Alignment explanation
Indices: 80392722--80392917 Score: 176
Period size: 43 Copynumber: 4.5 Consensus size: 45
80392712 AAATCTTAAC
* * * * *
80392722 CCCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGAG-CCTTAAA
1 CCCCTAAGCAGTAGGGTAACAGAGCTAAGATGATCAGACCTTAAA
** *
80392766 CCCCTAAGCAGTAGGGTAACAG-GCTAA-ATTTTCAGATCTTAAA
1 CCCCTAAGCAGTAGGGTAACAGAGCTAAGATGATCAGACCTTAAA
* * *
80392809 CCCCTAAGCAGTAGGGTAAC-GGGCTAA-AT-TTACAGATCTTAAA
1 CCCCTAAGCAGTAGGGTAACAGAGCTAAGATGAT-CAGACCTTAAA
* * *
80392852 CCCCTAAGCAGTAGGGAAACAGATC-AATGATGA-CA-AGCCTTAAC
1 CCCCTAAGCAGTAGGGTAACAGAGCTAA-GATGATCAGA-CCTTAAA
80392896 CCCCTAAGCAGTAGGGTAACAG
1 CCCCTAAGCAGTAGGGTAACAG
80392918 GTTGAAAATC
Statistics
Matches: 129, Mismatches: 15, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
42 7 0.05
43 69 0.53
44 51 0.40
45 2 0.02
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (45 bp):
CCCCTAAGCAGTAGGGTAACAGAGCTAAGATGATCAGACCTTAAA
Found at i:80392821 original size:43 final size:43
Alignment explanation
Indices: 80392760--80392918 Score: 205
Period size: 43 Copynumber: 3.7 Consensus size: 43
80392750 GGTGATGAGC
*
80392760 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTTCAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
*
80392803 CTTAAACCCCTAAGCAGTAGGGTAACGGGCTAAATTTACAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
* * * * *
80392846 CTTAAACCCCTAAGCAGTAGGGAAACA-GATCAATGATGACA-AGC
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAAT--TTACAGA-T
*
80392890 CTTAACCCCCTAAGCAGTAGGGTAACAGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGG
80392919 TTGAAAATCA
Statistics
Matches: 102, Mismatches: 10, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
42 5 0.05
43 67 0.66
44 29 0.28
45 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.21
Consensus pattern (43 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
Found at i:80393023 original size:41 final size:42
Alignment explanation
Indices: 80392965--80393044 Score: 135
Period size: 41 Copynumber: 1.9 Consensus size: 42
80392955 GAGCAGCTAA
80392965 AAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG-ATTAAGCG
1 AAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGAATTAAGCG
* *
80393006 AAGCTACAGCAGGTCTCCTTGAAGTTTCAGTGGAATTAA
1 AAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGAATTAA
80393045 TGGAAGTCAC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
41 31 0.86
42 5 0.14
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (42 bp):
AAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGAATTAAGCG
Found at i:80393697 original size:13 final size:13
Alignment explanation
Indices: 80393679--80393719 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 13
80393669 TTCGAATCGG
80393679 TTTTCTTTTTTTC
1 TTTTCTTTTTTTC
80393692 TTTTC--TTTTTC
1 TTTTCTTTTTTTC
*
80393703 TTTACTCTTTTTTC
1 TTTTCT-TTTTTTC
80393717 TTT
1 TTT
80393720 GTTTACATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
11 10 0.42
13 5 0.21
14 9 0.38
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTCTTTTTTTC
Found at i:80394365 original size:3 final size:3
Alignment explanation
Indices: 80394352--80394432 Score: 51
Period size: 3 Copynumber: 27.0 Consensus size: 3
80394342 TACTTGTAAC
* * *
80394352 ATT ATTT ATT ATT A-T ATTT ACT ATT ATT ATT ATT AAT ATT ACT ATT
1 ATT A-TT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT
** * *
80394398 A-T ATTT ATT AAC A-T ATT ATC ATT ATT TTT ATT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
80394433 CATATTAATA
Statistics
Matches: 59, Mismatches: 13, Indels: 12
0.70 0.15 0.14
Matches are distributed among these distances:
2 5 0.08
3 47 0.80
4 7 0.12
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:80394371 original size:12 final size:12
Alignment explanation
Indices: 80394354--80394438 Score: 63
Period size: 12 Copynumber: 7.3 Consensus size: 12
80394344 CTTGTAACAT
80394354 TATTTATTATTA
1 TATTTATTATTA
*
80394366 TATTTACTA-T-
1 TATTTATTATTA
80394376 TA-TTATTATTA
1 TATTTATTATTA
*
80394387 -ATATTACTATTA
1 TAT-TTATTATTA
**
80394399 TATTTATTAACA
1 TATTTATTATTA
*
80394411 TA-TTATCATTA
1 TATTTATTATTA
*
80394422 TTTTTATTATTCA
1 TATTTATTATT-A
80394435 TATT
1 TATT
80394439 AATATATATA
Statistics
Matches: 54, Mismatches: 12, Indels: 13
0.68 0.15 0.16
Matches are distributed among these distances:
9 5 0.09
10 4 0.07
11 8 0.15
12 31 0.57
13 6 0.11
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (12 bp):
TATTTATTATTA
Found at i:80394383 original size:21 final size:21
Alignment explanation
Indices: 80394352--80394430 Score: 74
Period size: 21 Copynumber: 3.6 Consensus size: 21
80394342 TACTTGTAAC
80394352 ATTATTTATTATT-ATATTTACT
1 ATTA-TTATTATTAATA-TTACT
80394374 ATTATTATTATTAATATTACT
1 ATTATTATTATTAATATTACT
80394395 ATTA-TATTTATTAACATATTA-T
1 ATTATTA-TTATT-A-ATATTACT
*
80394417 CATTATTTTTATTA
1 -ATTATTATTATTA
80394431 TTCATATTAA
Statistics
Matches: 50, Mismatches: 1, Indels: 12
0.79 0.02 0.19
Matches are distributed among these distances:
20 2 0.04
21 22 0.44
22 10 0.20
23 15 0.30
24 1 0.02
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTATTATTATTAATATTACT
Found at i:80395866 original size:328 final size:331
Alignment explanation
Indices: 80395256--80395867 Score: 734
Period size: 329 Copynumber: 1.9 Consensus size: 331
80395246 CGTATTCGGT
* ** * * *
80395256 AATTTGAGATAATCGTGCCCTAACTTACTGGGTTTCGATTTTTCTCATTTAACTTAAATAACAGA
1 AATTCGAGATAATCGTGCCCTAACTTACTGGGCCTCGACTTTTCTCATTCAACTTAAATAACAAA
** * * * * * *
80395321 ATACTCTTTTAAATTGCTATACGAATTTTGAAAATGCTCACTCTCGGAAATACGAAGTGTTGTGC
66 ATACTCTTTTAAATCACAACACGAAGTCTAAAAATGCTCACTCTCGGAAATACGAAGTGTGGTGC
* * * *
80395386 CCTAACTTACCGGGTATGATATTTCGTCACCTAGAAATATGAATTTGTTTTAAAACAAAGGCAAT
131 CCTAACTTACCGGGTATGACATTTCGTCACCTAGAAATAAGAATCTGTTTGAAAACAAAGGCAAT
* ** *
80395451 ATTCGGTGTTCGAGAACTCGGAAAACATACCCTAACTTACTGGGTTTCGATTTTTCCCGTTTACT
196 ATTCGGTGTTCGAAAACTCGGAAAACATACCCTAACTTACTGGGTTTCGATTTTTCCCGTCCACC
80395516 CTAAATAACCGAATACCCTTTTAACAAATTAAAAGACGTAAATTTTATACAAAAGGCAAGCTCGC
261 CTAAATAACCGAATACCCTTTTAACAAATTAAAAGACGTAAATTTTATACAAAAGGCAAGCTCGC
80395581 TCTAAA
326 TCTAAA
*
80395587 AATTCGAGATAATCGTGCCCTAACTTACTGGGCCTCGACTTTTCTCATTCAA-TCTAAAT-GCAA
1 AATTCGAGATAATCGTGCCCTAACTTACTGGGCCTCGACTTTTCTCATTCAACT-TAAATAACAA
* * * * * ** * *
80395650 AATATTCTTTTAAATCACAACATG-AGTCTAAAAATGCTTATTTTCGGAGCTTCGAGGTGTGGTG
65 AATACTCTTTTAAATCACAACACGAAGTCTAAAAATGCTCACTCTCGGAAATACGAAGTGTGGTG
* * * * *
80395714 CCCTAACTTACCGGGTATGACATTTTGAT-ATCTCGAAATAAG-ATCT-TTTGCAAATAAAGGCA
130 CCCTAACTTACCGGGTATGACATTTCG-TCACCTAGAAATAAGAATCTGTTTGAAAACAAAGGCA
* * * * *
80395776 ATGTTCGGTGTTCGAAAATTCGAGGAAACGTGCCCTAACTTACTGGGTTTCGA-TTTTCCTCGTC
194 ATATTCGGTGTTCGAAAACTCG-GAAAACATACCCTAACTTACTGGGTTTCGATTTTTCC-CGTC
* * *
80395840 CGCCCTAACTAACCGAATATCCTTTTAA
257 CACCCTAAATAACCGAATACCCTTTTAA
80395868 AAGAGGTTAA
Statistics
Matches: 232, Mismatches: 45, Indels: 11
0.81 0.16 0.04
Matches are distributed among these distances:
327 38 0.16
328 56 0.24
329 64 0.28
330 22 0.09
331 52 0.22
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (331 bp):
AATTCGAGATAATCGTGCCCTAACTTACTGGGCCTCGACTTTTCTCATTCAACTTAAATAACAAA
ATACTCTTTTAAATCACAACACGAAGTCTAAAAATGCTCACTCTCGGAAATACGAAGTGTGGTGC
CCTAACTTACCGGGTATGACATTTCGTCACCTAGAAATAAGAATCTGTTTGAAAACAAAGGCAAT
ATTCGGTGTTCGAAAACTCGGAAAACATACCCTAACTTACTGGGTTTCGATTTTTCCCGTCCACC
CTAAATAACCGAATACCCTTTTAACAAATTAAAAGACGTAAATTTTATACAAAAGGCAAGCTCGC
TCTAAA
Found at i:80396685 original size:17 final size:17
Alignment explanation
Indices: 80396655--80396687 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
80396645 AACAGACTAT
80396655 TATTATTATAAAAATAG
1 TATTATTATAAAAATAG
80396672 TATT-TTATATAAAATA
1 TATTATTATA-AAAATA
80396688 AATTTAATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
TATTATTATAAAAATAG
Found at i:80397035 original size:26 final size:26
Alignment explanation
Indices: 80397006--80397060 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
80396996 TATTATTTAA
*
80397006 TATTTGATATTTAATAATA-CTTTTCT
1 TATTTGATA-TTAAAAATATCTTTTCT
*
80397032 TATTTGATATTAAAAATATTTTTTCT
1 TATTTGATATTAAAAATATCTTTTCT
80397058 TAT
1 TAT
80397061 CAAGGATCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.58
Consensus pattern (26 bp):
TATTTGATATTAAAAATATCTTTTCT
Found at i:80401491 original size:16 final size:17
Alignment explanation
Indices: 80401448--80401499 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
80401438 GTTTTGACAG
*
80401448 AAGAAAGAAAGAAGAAA
1 AAGAAAGAAGGAAGAAA
* * *
80401465 AAAAAATAAGGAAGGAA
1 AAGAAAGAAGGAAGAAA
80401482 AAGAAA-AAGGATAGAAA
1 AAGAAAGAAGGA-AGAAA
80401499 A
1 A
80401500 GGAGGGAAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
16 5 0.18
17 23 0.82
ACGTcount: A:0.73, C:0.00, G:0.23, T:0.04
Consensus pattern (17 bp):
AAGAAAGAAGGAAGAAA
Found at i:80406284 original size:24 final size:25
Alignment explanation
Indices: 80406238--80406286 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
80406228 TAGTGTTCAC
* **
80406238 ATATATAGGGTTTGTATTCTAAATT
1 ATATATAGGGTTTGCATAATAAATT
80406263 ATATA-AGGGTTTGCATAATAAATT
1 ATATATAGGGTTTGCATAATAAATT
80406287 CATAGGTGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.37, C:0.04, G:0.16, T:0.43
Consensus pattern (25 bp):
ATATATAGGGTTTGCATAATAAATT
Found at i:80406314 original size:15 final size:15
Alignment explanation
Indices: 80406294--80406331 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
80406284 ATTCATAGGT
80406294 GTTTGCATTCCTAAG-
1 GTTTGCATT-CTAAGC
*
80406309 GTTTGCATTGTAAGC
1 GTTTGCATTCTAAGC
80406324 GTTTGCAT
1 GTTTGCAT
80406332 ACATTAGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 4 0.19
15 17 0.81
ACGTcount: A:0.18, C:0.16, G:0.24, T:0.42
Consensus pattern (15 bp):
GTTTGCATTCTAAGC
Found at i:80406499 original size:22 final size:22
Alignment explanation
Indices: 80406447--80406518 Score: 74
Period size: 23 Copynumber: 3.2 Consensus size: 22
80406437 TAAATAAATT
*
80406447 ATAGGGTTTGCATATTAGTACATG
1 ATAGGGTTTGCATATTA-AACA-G
* *
80406471 -TAGGGTTTGCATCTTACACAG
1 ATAGGGTTTGCATATTAAACAG
*
80406492 ATAGGGTTCGCATATCTAAACAG
1 ATAGGGTTTGCATAT-TAAACAG
80406515 ATAG
1 ATAG
80406519 AGCTCGCATG
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
21 1 0.02
22 15 0.37
23 25 0.61
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.32
Consensus pattern (22 bp):
ATAGGGTTTGCATATTAAACAG
Found at i:80406518 original size:23 final size:22
Alignment explanation
Indices: 80406447--80406527 Score: 65
Period size: 23 Copynumber: 3.6 Consensus size: 22
80406437 TAAATAAATT
* *
80406447 ATAGGGTTTGCATATTAGTACATG
1 ATAGGGTTCGCATATTA-AACA-G
* * *
80406471 -TAGGGTTTGCATCTTACACAG
1 ATAGGGTTCGCATATTAAACAG
80406492 ATAGGGTTCGCATATCTAAACAG
1 ATAGGGTTCGCATAT-TAAACAG
* *
80406515 ATAGAGCTCGCAT
1 ATAGGGTTCGCAT
80406528 GGCAAAAAGA
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
21 1 0.02
22 15 0.31
23 32 0.67
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (22 bp):
ATAGGGTTCGCATATTAAACAG
Found at i:80411665 original size:66 final size:68
Alignment explanation
Indices: 80411594--80411734 Score: 214
Period size: 66 Copynumber: 2.1 Consensus size: 68
80411584 TTTTTAGTTC
* * *
80411594 CTTTTAATTATAAAATATTAAATTTAAGC-TGTTTTAAAGAATTTTTTTTTTAATTTTCACC-CC
1 CTTTTAATTATAAAATATTAAATTCAAGCTTGTTTTAAAGAATTTTGTTTTTAATTTTAACCTCC
80411657 AAA
66 AAA
* * *
80411660 CTTTTAATTATAAAATATTAAATTCAAGCTTTTTTTAAAGAATTTTGTTTTTATTTTTAACCTTC
1 CTTTTAATTATAAAATATTAAATTCAAGCTTGTTTTAAAGAATTTTGTTTTTAATTTTAACCTCC
80411725 AAA
66 AAA
80411728 CTTTTAA
1 CTTTTAA
80411735 AACTTTATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
66 28 0.42
67 28 0.42
68 11 0.16
ACGTcount: A:0.35, C:0.10, G:0.04, T:0.50
Consensus pattern (68 bp):
CTTTTAATTATAAAATATTAAATTCAAGCTTGTTTTAAAGAATTTTGTTTTTAATTTTAACCTCC
AAA
Found at i:80413109 original size:9 final size:9
Alignment explanation
Indices: 80413095--80413139 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
80413085 TCTTTATTTT
*
80413095 TTTTTAGAA
1 TTTTTAAAA
80413104 TTTTT--AA
1 TTTTTAAAA
80413111 TTTTTAAAA
1 TTTTTAAAA
80413120 TTTTTAAAA
1 TTTTTAAAA
80413129 --TTTAAAA
1 TTTTTAAAA
80413136 TTTT
1 TTTT
80413140 GGAATTTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
7 14 0.44
9 18 0.56
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:80413113 original size:20 final size:19
Alignment explanation
Indices: 80413062--80413115 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
80413052 TTATTCTAGA
*
80413062 AAATTTTTAA-CTTTTTTT
1 AAATTTTTAATTTTTTTTT
80413080 AATATTCTTT-ATTTTTTTTT
1 AA-ATT-TTTAATTTTTTTTT
80413100 AGAATTTTTAATTTTT
1 A-AATTTTTAATTTTT
80413116 AAAATTTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
18 2 0.07
19 7 0.23
20 20 0.67
21 1 0.03
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.69
Consensus pattern (19 bp):
AAATTTTTAATTTTTTTTT
Found at i:80413114 original size:16 final size:16
Alignment explanation
Indices: 80413095--80413173 Score: 77
Period size: 16 Copynumber: 4.7 Consensus size: 16
80413085 TCTTTATTTT
*
80413095 TTTTTAGAATTTTTAA
1 TTTTTAAAATTTTTAA
80413111 TTTTTAAAATTTTTAA
1 TTTTTAAAATTTTTAA
** *
80413127 AATTTAAAATTTTGGAA
1 TTTTTAAAATTTT-TAA
80413144 TTTTTATAAATATTTTGAA
1 TTTTTA-AAAT-TTTT-AA
*
80413163 TTTTAAAAATT
1 TTTTTAAAATT
80413174 ATTTTGAATT
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
16 26 0.51
17 7 0.14
18 8 0.16
19 10 0.20
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (16 bp):
TTTTTAAAATTTTTAA
Found at i:80413166 original size:18 final size:18
Alignment explanation
Indices: 80413131--80413183 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 18
80413121 TTTTAAAATT
80413131 TAAA-ATTTTGGAATTTTTA
1 TAAATATTTT-GAA-TTTTA
80413150 TAAATATTTTGAATTTTA
1 TAAATATTTTGAATTTTA
*
80413168 AAAATTATTTTGAATT
1 TAAA-TATTTTGAATT
80413184 ATTTTATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 8 0.26
19 18 0.58
20 5 0.16
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.53
Consensus pattern (18 bp):
TAAATATTTTGAATTTTA
Found at i:80413289 original size:18 final size:18
Alignment explanation
Indices: 80413266--80413304 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
80413256 ACACCAATTC
*
80413266 ATTATTTGAGTTATTCAA
1 ATTATTTGACTTATTCAA
*
80413284 ATTATTTGACTTATTCTA
1 ATTATTTGACTTATTCAA
80413302 ATT
1 ATT
80413305 GTAAAATTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (18 bp):
ATTATTTGACTTATTCAA
Found at i:80415357 original size:53 final size:53
Alignment explanation
Indices: 80415294--80415401 Score: 189
Period size: 53 Copynumber: 2.0 Consensus size: 53
80415284 TTAACGAATA
*
80415294 TTCACTAAGATAATTGTACCACATACGTCCAGATTTTTTTAATCCATATAAAC
1 TTCACTAAGATAATTGTACCACATACGTCCAGATTGTTTTAATCCATATAAAC
* *
80415347 TTCACTAAGATAATTGTACCACGTACGTCTAGATTGTTTTAATCCATATAAAC
1 TTCACTAAGATAATTGTACCACATACGTCCAGATTGTTTTAATCCATATAAAC
80415400 TT
1 TT
80415402 TTATTTAATT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.37
Consensus pattern (53 bp):
TTCACTAAGATAATTGTACCACATACGTCCAGATTGTTTTAATCCATATAAAC
Found at i:80421985 original size:40 final size:40
Alignment explanation
Indices: 80421939--80422223 Score: 191
Period size: 40 Copynumber: 7.0 Consensus size: 40
80421929 AAAAAACAAC
80421939 GCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAATACT
1 GCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAATACT
* *
80421979 GCTATAGATCGAGCATTAGCGGCGCTTCTTGAAAAATGCCT
1 GCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAAT-ACT
* * * * * *
80422020 -CTATAGGTCTAGCATTAGCGGCACTTTCTGAAAAACACC
1 GCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAATACT
* * * * * * *
80422059 GCAAAAAAGTTAAGTAAGGCTTTAGCGGCACATTTTG-AAAA-ACGT
1 GC--TATAGAT-CG--A-GCATTAGCGGCGCTTTTTGAAAAATAC-T
* * ** *
80422104 CGCTATAGATCAAGCATTAGCGGCGCTTCTTGAAAAACGCC
1 -GCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAATACT
* * * * *
80422145 ACTATAGATTGAGCATTAGCGACGTTTTTTTAAAAA-ACATT
1 GCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAATAC--T
** *
80422186 GCTATAGATCGAGCATTTTCGGCGCTTTTTAAAAAATA
1 GCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAATA
80422224 TCGCAATAGT
Statistics
Matches: 184, Mismatches: 46, Indels: 28
0.71 0.18 0.11
Matches are distributed among these distances:
39 2 0.01
40 111 0.60
41 36 0.20
42 6 0.03
44 6 0.03
45 5 0.03
46 18 0.10
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (40 bp):
GCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAATACT
Found at i:80423972 original size:22 final size:22
Alignment explanation
Indices: 80423947--80423989 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
80423937 CTAAATCAAC
* *
80423947 AGGACGGCTCAACGCCATAGAT
1 AGGACGACCCAACGCCATAGAT
*
80423969 AGGACGACCCAACGCCGTAGA
1 AGGACGACCCAACGCCATAGA
80423990 CAAGATGGCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.30, G:0.28, T:0.09
Consensus pattern (22 bp):
AGGACGACCCAACGCCATAGAT
Found at i:80430310 original size:40 final size:41
Alignment explanation
Indices: 80430266--80430437 Score: 136
Period size: 41 Copynumber: 4.2 Consensus size: 41
80430256 ATACATTAGC
* *
80430266 GGCG-TTTGAAACAAAATGCTGCTAAAAACTGAGCAATAGT
1 GGCGTTTTGAAACAAAACGCCGCTAAAAACTGAGCAATAGT
* ** *
80430306 GGCGTTTTTATCCAAAACGCCGCTAAAAACTGAGTAATAGT
1 GGCGTTTTGAAACAAAACGCCGCTAAAAACTGAGCAATAGT
* * ** * * *
80430347 GGCATTTTCATCCAAAACGCCACAAAAAAACTGAGAAATAGT
1 GGCGTTTTGAAACAAAACGCCGC-TAAAAACTGAGCAATAGT
** * *
80430389 -GCGTTTT-ATTCAAAACGCCACAAAAAACTGAG-ATATAGT
1 GGCGTTTTGAAACAAAACGCCGCTAAAAACTGAGCA-ATAGT
80430428 GGCGCTTTTG
1 GGCG-TTTTG
80430438 TTCCAAACGC
Statistics
Matches: 113, Mismatches: 13, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 16 0.14
40 20 0.18
41 60 0.53
42 16 0.14
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (41 bp):
GGCGTTTTGAAACAAAACGCCGCTAAAAACTGAGCAATAGT
Found at i:80430331 original size:41 final size:40
Alignment explanation
Indices: 80430289--80430452 Score: 192
Period size: 41 Copynumber: 4.0 Consensus size: 40
80430279 AAATGCTGCT
* *
80430289 AAAAACTGAGCAATAGTGGCGTTTTTATCCAAAACGCCGCT
1 AAAAACTGAG-AATAGTGGCGTTTTTATCCAAAACGCCACA
* *
80430330 AAAAACTGAGTAATAGTGGCATTTTCATCCAAAACGCCACAA
1 AAAAACTGAG-AATAGTGGCGTTTTTATCCAAAACGCCAC-A
*
80430372 AAAAACTGAGAAATAGT-GCG-TTTTATTCAAAACGCCACA
1 AAAAACTGAG-AATAGTGGCGTTTTTATCCAAAACGCCACA
80430411 AAAAACTGAGATATAGTGGCGCTTTTGT-TCC-AAACGCCACA
1 AAAAACTGAGA-ATAGTGGCG-TTTT-TATCCAAAACGCCACA
80430452 A
1 A
80430453 CAGGTTGAGC
Statistics
Matches: 107, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 16 0.15
40 19 0.18
41 49 0.46
42 21 0.20
43 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (40 bp):
AAAAACTGAGAATAGTGGCGTTTTTATCCAAAACGCCACA
Found at i:80430404 original size:81 final size:83
Alignment explanation
Indices: 80430289--80430452 Score: 219
Period size: 81 Copynumber: 2.0 Consensus size: 83
80430279 AAATGCTGCT
* * *
80430289 AAAAACTGAGCAATAGTGGCGTTTTTATCCAAAACGCCGCTAAAAACTGAG-TAATAGTGGC-AT
1 AAAAACTGAGAAATAGTGGCGTTTTTATCCAAAACGCCACAAAAAACTGAGAT-ATAGTGGCGAT
80430352 TTTCATCCAAAACGCCACAA
65 TTTCATCC-AAACGCCACAA
* *
80430372 AAAAACTGAGAAATAGT-GCG-TTTTATTCAAAACGCCACAAAAAACTGAGATATAGTGGCGCTT
1 AAAAACTGAGAAATAGTGGCGTTTTTATCCAAAACGCCACAAAAAACTGAGATATAGTGGCGATT
**
80430435 TTGTTCCAAACGCCACAA
66 TTCATCCAAACGCCACAA
80430453 CAGGTTGAGC
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
81 45 0.62
82 11 0.15
83 16 0.22
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (83 bp):
AAAAACTGAGAAATAGTGGCGTTTTTATCCAAAACGCCACAAAAAACTGAGATATAGTGGCGATT
TTCATCCAAACGCCACAA
Found at i:80431075 original size:26 final size:27
Alignment explanation
Indices: 80431010--80431076 Score: 73
Period size: 29 Copynumber: 2.4 Consensus size: 27
80431000 AATATGAAGC
* *
80431010 CTAACCCCTAAATCATAACCTATGACCGT
1 CTAAACCCTAAATCATAACCCATGA-C-T
*
80431039 CTAACCCCTAAATCATAACCCATGA-T
1 CTAAACCCTAAATCATAACCCATGACT
*
80431065 CTAAACTCTAAA
1 CTAAACCCTAAA
80431077 CCTTTTAAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 11 0.31
29 24 0.69
ACGTcount: A:0.39, C:0.33, G:0.04, T:0.24
Consensus pattern (27 bp):
CTAAACCCTAAATCATAACCCATGACT
Found at i:80433909 original size:40 final size:40
Alignment explanation
Indices: 80433850--80433991 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
80433840 AAATTGAATG
* * *
80433850 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
80433890 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
80433930 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
80433970 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
80433992 GCATTTGTGC
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 3 0.04
40 82 0.96
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:80434015 original size:40 final size:39
Alignment explanation
Indices: 80433888--80434017 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
80433878 ATGCTGGAAA
* * *
80433888 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
80433929 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
80433967 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
80434008 TTATATCCGG
1 TTATATCCGG
80434018 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:80436903 original size:40 final size:40
Alignment explanation
Indices: 80436809--80436953 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
80436799 TACTCGAATG
*
80436809 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
80436850 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
80436890 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
*
80436930 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
80436954 CTTGTGCGAG
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 63 0.68
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:80443390 original size:71 final size:71
Alignment explanation
Indices: 80443306--80443469 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
80443296 CGATTTGTCT
80443306 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
80443371 CTTTCA
66 CTTTCA
80443377 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
80443442 CTTTCA
66 CTTTCA
80443448 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
80443470 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:80443507 original size:71 final size:70
Alignment explanation
Indices: 80443306--80443503 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
80443296 CGATTTGTCT
* * * *
80443306 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
80443371 CTTTCA
65 CTTTCA
* * * *
80443377 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
80443442 CTTTCA
65 CTTTCA
* *
80443448 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
80443504 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:80448667 original size:71 final size:71
Alignment explanation
Indices: 80448581--80448744 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
80448571 CGATTTGTCT
80448581 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
80448646 CTTTCA
66 CTTTCA
80448652 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
80448717 CTTTCA
66 CTTTCA
80448723 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
80448745 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:80448782 original size:71 final size:70
Alignment explanation
Indices: 80448581--80448778 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
80448571 CGATTTGTCT
* * * *
80448581 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
80448646 CTTTCA
65 CTTTCA
* * * *
80448652 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
80448717 CTTTCA
65 CTTTCA
* *
80448723 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
80448779 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:80452347 original size:19 final size:19
Alignment explanation
Indices: 80452323--80452360 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
80452313 AAATATCCTT
80452323 CTGCCGTTGAAGACTCCGA
1 CTGCCGTTGAAGACTCCGA
80452342 CTGCCGTTGAAGACTCCGA
1 CTGCCGTTGAAGACTCCGA
80452361 GTGGACAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.32, G:0.26, T:0.21
Consensus pattern (19 bp):
CTGCCGTTGAAGACTCCGA
Found at i:80454256 original size:7 final size:7
Alignment explanation
Indices: 80454244--80454276 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
80454234 GGTTTATAGA
80454244 TTTGCTT
1 TTTGCTT
80454251 TTTGCTT
1 TTTGCTT
80454258 TTTGCTT
1 TTTGCTT
80454265 TTTGCTT
1 TTTGCTT
80454272 TTTGC
1 TTTGC
80454277 GTTTATAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.00, C:0.15, G:0.15, T:0.70
Consensus pattern (7 bp):
TTTGCTT
Found at i:80454698 original size:11 final size:11
Alignment explanation
Indices: 80454679--80454708 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
80454669 TTATCTACTC
*
80454679 TTTTATTTTCT
1 TTTTTTTTTCT
80454690 TTTTTTTTTCT
1 TTTTTTTTTCT
80454701 TTTTTTTT
1 TTTTTTTT
80454709 AAGTTACCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.03, C:0.07, G:0.00, T:0.90
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:80455130 original size:64 final size:64
Alignment explanation
Indices: 80455057--80455190 Score: 241
Period size: 64 Copynumber: 2.1 Consensus size: 64
80455047 TAATATTTCT
* *
80455057 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACGAGTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
*
80455121 ATATTTCTATCATGAGTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACGAGTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
80455185 ATATTT
1 ATATTT
80455191 AATAAAATAT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
64 67 1.00
ACGTcount: A:0.38, C:0.11, G:0.04, T:0.46
Consensus pattern (64 bp):
ATATTTCTATCACGAGTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
Found at i:80455465 original size:29 final size:29
Alignment explanation
Indices: 80455433--80455506 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
80455423 AACGACATGT
* *
80455433 ATATTATTTAATTAAAATAATTTTTTTCA
1 ATATTATTTAATTAAAATAATTTTTATAA
80455462 ATATTATTTAATTAAAATAATTTTTATAA
1 ATATTATTTAATTAAAATAATTTTTATAA
80455491 ATATTATTTAATTAAA
1 ATATTATTTAATTAAA
80455507 TATTATTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (29 bp):
ATATTATTTAATTAAAATAATTTTTATAA
Found at i:80455506 original size:15 final size:15
Alignment explanation
Indices: 80455433--80455517 Score: 88
Period size: 15 Copynumber: 5.8 Consensus size: 15
80455423 AACGACATGT
80455433 ATATTATTTAATTAA
1 ATATTATTTAATTAA
* ** *
80455448 A-ATAATTTTTTTCA
1 ATATTATTTAATTAA
80455462 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
80455478 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
80455491 ATATTATTTAATTAA
1 ATATTATTTAATTAA
80455506 ATATTATTTAAT
1 ATATTATTTAAT
80455518 CCACAACTTA
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
12 3 0.05
13 7 0.12
14 12 0.21
15 25 0.45
16 6 0.11
17 3 0.05
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:80455678 original size:44 final size:44
Alignment explanation
Indices: 80455630--80455974 Score: 447
Period size: 44 Copynumber: 7.4 Consensus size: 44
80455620 AATATTTAAC
80455630 ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAATAT
1 ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAATAT
*
80455674 ATAACTTATATAACTTACATAACTTATATAACTTATATAACTTAGATAAATAT
1 ATAAC---T-T-AC--A-A-AACTTACATAACTTATATAACTTAGATAAATAT
* *
80455727 ATAACTTACATAACTTATATAACTTATATAACTTAGATAAATAT
1 ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAATAT
*
80455771 ATAACTTACATAACTTACATAACTTATATAACTTAGATAAATAT
1 ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAATAT
80455815 ATAACTTATATAACTTATATAACTTACATAACTTATATAACTTAGATAAATAT
1 ATAAC---T-T-AC--A-A-AACTTACATAACTTATATAACTTAGATAAATAT
*
80455868 ATAACTTACATAACTTACATAACTTATATAACTTAGATAAATAT
1 ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAATAT
* *
80455912 ATAACTTACATAACTTATATAACTTATATAACTTAGATAAATAT
1 ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAATAT
80455956 ATAACTTACATAATACTTA
1 ATAACTTACA-AA-ACTTA
80455975 AATATATTTG
Statistics
Matches: 274, Mismatches: 7, Indels: 38
0.86 0.02 0.12
Matches are distributed among these distances:
44 172 0.63
45 1 0.00
46 7 0.03
47 2 0.01
48 6 0.02
49 6 0.02
50 2 0.01
51 2 0.01
52 1 0.00
53 75 0.27
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.38
Consensus pattern (44 bp):
ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAATAT
Found at i:80455698 original size:53 final size:54
Alignment explanation
Indices: 80455630--80455968 Score: 386
Period size: 53 Copynumber: 6.6 Consensus size: 54
80455620 AATATTTAAC
* * *
80455630 ATAACTTACAAAACTTACATAACTTATATAACTTAGATAA-ATATATAACTTAT
1 ATAACTTACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTAT
80455683 ATAACTTACATAACTTATATAACTTATATAACTTAG-------ATA-AA--TAT
1 ATAACTTACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTAT
* *
80455727 ATAACTTACATAACTTATATAACTTATATAACTTAGATAA-ATATATAACTTAC
1 ATAACTTACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTAT
* * *
80455780 ATAACTTACATAACTTATATAACTTAGATAA-ATATATAACTTATATAACTTAT
1 ATAACTTACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTAT
* * * * *
80455833 ATAACTTACATAACTTATATAACTTAGATAA-ATATATAACTTACATAACTTAC
1 ATAACTTACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTAT
* * * *
80455886 ATAACTTATATAACTTAGATAA-ATATATAACTTACATAACTTATATAACTTAT
1 ATAACTTACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTAT
* * *
80455939 ATAACTTAGATAA-ATATATAACTTACATAA
1 ATAACTTACATAACTTATATAACTTATATAA
80455969 TACTTAAATA
Statistics
Matches: 251, Mismatches: 23, Indels: 24
0.84 0.08 0.08
Matches are distributed among these distances:
44 39 0.16
46 2 0.01
47 3 0.01
50 3 0.01
51 2 0.01
52 18 0.07
53 184 0.73
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.37
Consensus pattern (54 bp):
ATAACTTACATAACTTATATAACTTATATAACTTAGATAACTTATATAACTTAT
Found at i:80455754 original size:97 final size:96
Alignment explanation
Indices: 80455630--80455968 Score: 505
Period size: 97 Copynumber: 3.6 Consensus size: 96
80455620 AATATTTAAC
* *
80455630 ATAACTTACAAAACTTACATAACTTATATAACTTAGATAAATATATAACTTATATAACTTACATA
1 ATAACTTACATAACTTATATAACTTATATAACTTAGATAAATATATAA-TTATATAACTTACATA
*
80455695 ACTTATATAACTTATATAACTTAGATAAATAT
65 ACTTACATAACTTATATAACTTAGATAAATAT
80455727 ATAACTTACATAACTTATATAACTTATATAACTTAG------ATA-AA-TATATAACTTACATAA
1 ATAACTTACATAACTTATATAACTTATATAACTTAGATAAATATATAATTATATAACTTACATAA
80455784 CTTACATAACTTATATAACTTAGATAAATAT
66 CTTACATAACTTATATAACTTAGATAAATAT
* * * * * *
80455815 ATAACTTATATAACTTATATAACTTACATAACTTATATAACTTAGATAAATATATAACTTACATA
1 ATAACTTACATAACTTATATAACTTATATAACTTAGATAA-ATATATAATTATATAACTTACATA
80455880 ACTTACATAACTTATATAACTTAGATAAATAT
65 ACTTACATAACTTATATAACTTAGATAAATAT
*
80455912 ATAACTTACATAACTTATATAACTTATATAACTTAGATAAATATATAACTTACATAA
1 ATAACTTACATAACTTATATAACTTATATAACTTAGATAAATATATAA-TTATATAA
80455969 TACTTAAATA
Statistics
Matches: 218, Mismatches: 14, Indels: 20
0.87 0.06 0.08
Matches are distributed among these distances:
88 79 0.36
90 2 0.01
91 3 0.01
95 2 0.01
96 8 0.04
97 124 0.57
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.37
Consensus pattern (96 bp):
ATAACTTACATAACTTATATAACTTATATAACTTAGATAAATATATAATTATATAACTTACATAA
CTTACATAACTTATATAACTTAGATAAATAT
Found at i:80455835 original size:11 final size:10
Alignment explanation
Indices: 80455648--80455961 Score: 199
Period size: 9 Copynumber: 35.6 Consensus size: 10
80455638 CAAAACTTAC
80455648 ATAACT-TAT
1 ATAACTATAT
*
80455657 ATAACT-TAG
1 ATAACTATAT
80455666 ATAA--ATAT
1 ATAACTATAT
80455674 ATAACT-TAT
1 ATAACTATAT
*
80455683 ATAACT-TAC
1 ATAACTATAT
80455692 ATAACT-TAT
1 ATAACTATAT
80455701 ATAACT-TAT
1 ATAACTATAT
*
80455710 ATAACT-TAG
1 ATAACTATAT
80455719 ATAA--ATAT
1 ATAACTATAT
*
80455727 ATAACT-TAC
1 ATAACTATAT
80455736 ATAACT-TAT
1 ATAACTATAT
80455745 ATAACT-TAT
1 ATAACTATAT
*
80455754 ATAACT-TAG
1 ATAACTATAT
80455763 ATAA--ATAT
1 ATAACTATAT
*
80455771 ATAACT-TAC
1 ATAACTATAT
*
80455780 ATAACT-TAC
1 ATAACTATAT
80455789 ATAACT-TAT
1 ATAACTATAT
*
80455798 ATAACT-TAG
1 ATAACTATAT
80455807 ATAA--ATAT
1 ATAACTATAT
80455815 ATAACT-TAT
1 ATAACTATAT
80455824 ATAACT-TAT
1 ATAACTATAT
*
80455833 ATAACT-TAC
1 ATAACTATAT
80455842 ATAACT-TAT
1 ATAACTATAT
*
80455851 ATAACT-TAG
1 ATAACTATAT
80455860 ATAA--ATAT
1 ATAACTATAT
*
80455868 ATAACT-TAC
1 ATAACTATAT
*
80455877 ATAACT-TAC
1 ATAACTATAT
80455886 ATAACT-TAT
1 ATAACTATAT
*
80455895 ATAACT-TAG
1 ATAACTATAT
80455904 ATAA--ATAT
1 ATAACTATAT
*
80455912 ATAACT-TAC
1 ATAACTATAT
80455921 ATAACT-TAT
1 ATAACTATAT
80455930 ATAACT-TAT
1 ATAACTATAT
*
80455939 ATAACT-TAG
1 ATAACTATAT
80455948 ATAA--ATAT
1 ATAACTATAT
80455956 ATAACT
1 ATAACT
80455962 TACATAATAC
Statistics
Matches: 258, Mismatches: 26, Indels: 41
0.79 0.08 0.13
Matches are distributed among these distances:
8 42 0.16
9 216 0.84
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.38
Consensus pattern (10 bp):
ATAACTATAT
Found at i:80455981 original size:26 final size:26
Alignment explanation
Indices: 80455680--80455942 Score: 163
Period size: 26 Copynumber: 10.0 Consensus size: 26
80455670 ATATATAACT
* *
80455680 TATATAACTTACATAACTTATATAACT
1 TATATAACTTACATAACTTAGATAA-A
* * * *
80455707 TATATAACTTAGATAA-ATATATAACT
1 TATATAACTTACATAACTTAGATAA-A
* * * *
80455733 TACATAACTTATATAACTTATATAACT
1 TATATAACTTACATAACTTAGATAA-A
* * * * *
80455760 TAGATAA-ATATATAACTTACATAACT
1 TATATAACTTACATAACTTAGATAA-A
* *
80455786 TACATAACTTATATAACTTAGATAAA
1 TATATAACTTACATAACTTAGATAAA
* * *
80455812 TATATAACTTATATAACTTATATAACT
1 TATATAACTTACATAACTTAGATAA-A
* *
80455839 TACATAACTTATATAACTTAGATAAA
1 TATATAACTTACATAACTTAGATAAA
* *
80455865 TATATAACTTACATAACTTACATAACT
1 TATATAACTTACATAACTTAGATAA-A
* * * *
80455892 TATATAACTTAGATAA-ATATATAACT
1 TATATAACTTACATAACTTAGATAA-A
* * *
80455918 TACATAACTTATATAACTTATATAA
1 TATATAACTTACATAACTTAGATAA
80455943 CTTAGATAAA
Statistics
Matches: 203, Mismatches: 28, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
26 113 0.56
27 90 0.44
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.38
Consensus pattern (26 bp):
TATATAACTTACATAACTTAGATAAA
Found at i:80457855 original size:12 final size:12
Alignment explanation
Indices: 80457838--80457862 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80457828 AAGATCGAGG
80457838 GATGAATCTGAT
1 GATGAATCTGAT
80457850 GATGAATCTGAT
1 GATGAATCTGAT
80457862 G
1 G
80457863 GAGAGGATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:80461686 original size:93 final size:93
Alignment explanation
Indices: 80461574--80461744 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
80461564 GCCCATAAGT
* *
80461574 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80461639 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
80461667 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80461732 CGAGTTCGGATGC
66 CGAGTTCGGATGC
80461745 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:80461760 original size:46 final size:46
Alignment explanation
Indices: 80461566--80461746 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
80461556 TGTAACCCGC
* * *
80461566 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
80461612 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
80461662 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
80461705 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
80461747 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:80464147 original size:29 final size:29
Alignment explanation
Indices: 80464108--80464195 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
80464098 CAAAGATAAC
*
80464108 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
80464137 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
80464166 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
80464196 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:80464166 original size:15 final size:15
Alignment explanation
Indices: 80464108--80464186 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
80464098 CAAAGATAAC
*
80464108 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
80464122 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
80464137 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
80464151 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
80464166 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
80464181 AAGAAA
1 AAGAAA
80464187 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:80464195 original size:15 final size:15
Alignment explanation
Indices: 80464119--80464195 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
80464109 AGAAAACCGA
80464119 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
80464134 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
80464148 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
80464162 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
80464178 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
80464193 ATA
1 ATA
80464196 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:80467257 original size:93 final size:93
Alignment explanation
Indices: 80467145--80467315 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
80467135 GCCCATAAGT
* *
80467145 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80467210 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
80467238 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80467303 CGAGTTCGGATGC
66 CGAGTTCGGATGC
80467316 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:80467331 original size:46 final size:46
Alignment explanation
Indices: 80467137--80467317 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
80467127 TGTAACCCGC
* * *
80467137 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
80467183 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
80467233 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
80467276 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
80467318 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:80469487 original size:25 final size:25
Alignment explanation
Indices: 80469459--80469509 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
80469449 GATCTCCTTT
80469459 GACATCCGAAGCTGGAGAAATTATG
1 GACATCCGAAGCTGGAGAAATTATG
*
80469484 GACATCCGAAGCTGGAGAACTTATG
1 GACATCCGAAGCTGGAGAAATTATG
80469509 G
1 G
80469510 TATATTTACT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (25 bp):
GACATCCGAAGCTGGAGAAATTATG
Found at i:80469563 original size:13 final size:14
Alignment explanation
Indices: 80469547--80469575 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
80469537 TTCTAAATAT
80469547 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
80469560 TTATAATTGTTTAA
1 TTATAATTGTTTAA
80469574 TT
1 TT
80469576 CCATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:80470018 original size:21 final size:21
Alignment explanation
Indices: 80469990--80470065 Score: 100
Period size: 21 Copynumber: 3.6 Consensus size: 21
80469980 ACTTAGAGAG
*
80469990 GAGGCAGCAGAGAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
* *
80470011 GCGGCAGCAGCGATGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
*
80470032 AAGGCA-CGAGCGAGGGAGGCA
1 GAGGCAGC-AGCGAGGGAGGCA
80470053 GAGGCAGCAGCGA
1 GAGGCAGCAGCGA
80470066 TGGCAGTAGA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
20 1 0.02
21 44 0.96
22 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.49, T:0.01
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGCA
Found at i:80470378 original size:31 final size:32
Alignment explanation
Indices: 80470301--80470378 Score: 77
Period size: 31 Copynumber: 2.4 Consensus size: 32
80470291 AATTAATGTT
* *
80470301 TTTGGTTGTATTTTTTATGCTAAATTTGCTATT
1 TTTGGTTGCATTTTTTA-GCTAAATTTGCTATA
* * * *
80470334 TTTAGTTGCATTTTTTA-CTATATTTGTTGTA
1 TTTGGTTGCATTTTTTAGCTAAATTTGCTATA
*
80470365 TTTGGTTGGATTTT
1 TTTGGTTGCATTTT
80470379 AATGTAGGAA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
31 22 0.59
33 15 0.41
ACGTcount: A:0.17, C:0.05, G:0.17, T:0.62
Consensus pattern (32 bp):
TTTGGTTGCATTTTTTAGCTAAATTTGCTATA
Found at i:80470491 original size:17 final size:17
Alignment explanation
Indices: 80470469--80470503 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
80470459 CTAAAAGTAA
*
80470469 TGGCTTTTAGCGGCGCT
1 TGGCTTTTAGCCGCGCT
80470486 TGGCTTTTAGCCGCGCT
1 TGGCTTTTAGCCGCGCT
80470503 T
1 T
80470504 TCCCAACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.06, C:0.26, G:0.31, T:0.37
Consensus pattern (17 bp):
TGGCTTTTAGCCGCGCT
Found at i:80470537 original size:43 final size:43
Alignment explanation
Indices: 80470489--80470616 Score: 175
Period size: 43 Copynumber: 3.0 Consensus size: 43
80470479 CGGCGCTTGG
* ***
80470489 CTTTTAGCCGCGCTTTCCCAACAAACGCCGCTAAAAGCCATGA
1 CTTTTAGCAGCGCTTTTTTAACAAACGCCGCTAAAAGCCATGA
* * *
80470532 CTTTTAGTAGTGCTTTTTTAACAAACGTCGCTAAAAGCCATGA
1 CTTTTAGCAGCGCTTTTTTAACAAACGCCGCTAAAAGCCATGA
* *
80470575 CTTTTAGCGGCGCTTTTTTAACAAACGCCGCTAAAAGTCATG
1 CTTTTAGCAGCGCTTTTTTAACAAACGCCGCTAAAAGCCATG
80470617 GCTTAAAAAA
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 73 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (43 bp):
CTTTTAGCAGCGCTTTTTTAACAAACGCCGCTAAAAGCCATGA
Found at i:80470747 original size:19 final size:19
Alignment explanation
Indices: 80470719--80470761 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
80470709 GTAGTGTATC
80470719 TTTA-TATTTAATCTAATT
1 TTTATTATTTAATCTAATT
* * *
80470737 TTTATTATTTATTTTAGTT
1 TTTATTATTTAATCTAATT
80470756 TTTATT
1 TTTATT
80470762 CTATATTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (19 bp):
TTTATTATTTAATCTAATT
Found at i:80470768 original size:19 final size:17
Alignment explanation
Indices: 80470734--80470789 Score: 67
Period size: 19 Copynumber: 3.1 Consensus size: 17
80470724 ATTTAATCTA
80470734 ATTTTTATTATTTATTTT
1 ATTTTTATT-TTTATTTT
*
80470752 AGTTTTTATTCTATATTTT
1 A-TTTTTATT-TTTATTTT
80470771 CATTTTTATTTTTATTTT
1 -ATTTTTATTTTTATTTT
80470789 A
1 A
80470790 ATATTTAAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
17 1 0.03
18 8 0.24
19 23 0.70
20 1 0.03
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.73
Consensus pattern (17 bp):
ATTTTTATTTTTATTTT
Found at i:80470777 original size:7 final size:6
Alignment explanation
Indices: 80470734--80470788 Score: 58
Period size: 6 Copynumber: 8.8 Consensus size: 6
80470724 ATTTAATCTA
* *
80470734 ATTTTT ATTATTT A-TTTT AGTTTTT ATTCTAT ATTTTC ATTTTT ATTTTT
1 ATTTTT ATT-TTT ATTTTT A-TTTTT ATT-TTT ATTTTT ATTTTT ATTTTT
80470784 ATTTT
1 ATTTT
80470789 AATATTTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
5 4 0.10
6 23 0.56
7 14 0.34
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.75
Consensus pattern (6 bp):
ATTTTT
Found at i:80471061 original size:42 final size:41
Alignment explanation
Indices: 80470990--80471266 Score: 243
Period size: 42 Copynumber: 6.5 Consensus size: 41
80470980 AAATATTTTT
* * * **
80470990 TAAAGGTTATGTTCTTTAGCGGTGTTTGTGAGAAAAGCGTTGC
1 TAAAGG-TCTGTTCTATAGCGGCGTTTGTG-GAAAAGCGCCGC
* * *
80471033 TAAAGGTCTATTCTATAGTGGCGTTTGTGGCAAAA-CTGCCAC
1 TAAAGGTCTGTTCTATAGCGGCGTTTGTGG-AAAAGC-GCCGC
**
80471075 TAAAGGTCTGTTCTATAGCGGTATTTGTGGGAAAAAGCGCCGC
1 TAAAGGTCTGTTCTATAGCGGCGTTTGT-GG-AAAAGCGCCGC
* * * **
80471118 TAAAGGT-TGTTCTATAGCAGCATTTGTGGGGAAAGCATCGC
1 TAAAGGTCTGTTCTATAGCGGCGTTTGT-GGAAAAGCGCCGC
* * *
80471159 TAAATGTCATGTTCTATAGTGGCGTTTGTGGTAAAGCGCCGC
1 TAAAGGTC-TGTTCTATAGCGGCGTTTGTGGAAAAGCGCCGC
* *
80471201 TAAAGGTCATGTTCTATAACGGCGTTTGTGGAAAAAGCGCCAC
1 TAAAGGTC-TGTTCTATAGCGGCGTTTGTGG-AAAAGCGCCGC
* *
80471244 CAAAGGTCATGTTCTACAGCGGC
1 TAAAGGTC-TGTTCTATAGCGGC
80471267 CTTTTTTTAC
Statistics
Matches: 193, Mismatches: 34, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
41 16 0.08
42 107 0.55
43 69 0.36
44 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (41 bp):
TAAAGGTCTGTTCTATAGCGGCGTTTGTGGAAAAGCGCCGC
Found at i:80471120 original size:85 final size:84
Alignment explanation
Indices: 80470990--80471265 Score: 281
Period size: 85 Copynumber: 3.3 Consensus size: 84
80470980 AAATATTTTT
* * * ** * *
80470990 TAAAGGTTATGTTCTTTAGCGGTGTTTGTGAGAAAAGCGTTGCTAAAGGTCTATTCTATAGTGGC
1 TAAAGGTCATGTTCTATAGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGGTCTGTTCTATAGCGGC
*
80471055 GTTTGTGGCAAAACTGCCAC
66 GTTTGTGGAAAAAC-GCCAC
* *
80471075 TAAAGGTC-TGTTCTATAGCGGTATTTGTGGGAAAAAGCGCCGCTAAAGGT-TGTTCTATAGCAG
1 TAAAGGTCATGTTCTATAGCGGTGTTTGTGGG-AAAAGCGCCGCTAAAGGTCTGTTCTATAGCGG
* ** *
80471138 CATTTGTGGGGAAA-GCATCGC
65 CGTTTGTGGAAAAACGC--CAC
* * * * *
80471159 TAAATGTCATGTTCTATAGTGGCGTTTGT-GGTAAAGCGCCGCTAAAGGTCATGTTCTATAACGG
1 TAAAGGTCATGTTCTATAGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGGTC-TGTTCTATAGCGG
80471223 CGTTTGTGGAAAAAGCGCCAC
65 CGTTTGTGGAAAAA-CGCCAC
* *
80471244 CAAAGGTCATGTTCTACAGCGG
1 TAAAGGTCATGTTCTATAGCGG
80471266 CCTTTTTTTA
Statistics
Matches: 155, Mismatches: 28, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
82 2 0.01
83 17 0.11
84 52 0.34
85 82 0.53
87 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (84 bp):
TAAAGGTCATGTTCTATAGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGGTCTGTTCTATAGCGGC
GTTTGTGGAAAAACGCCAC
Found at i:80471528 original size:40 final size:40
Alignment explanation
Indices: 80471484--80471606 Score: 192
Period size: 40 Copynumber: 3.1 Consensus size: 40
80471474 CTGTTGGATT
*
80471484 TACCGAAATGTATGCGCTTTCGAGCCATACCTACTGGATC
1 TACCGAAATGTATGCGCTTTCGAGCCATACCTACTGAATC
* * *
80471524 TACCGAAAAGTATGTGCTTTCGAGCCATACGTACTGAATC
1 TACCGAAATGTATGCGCTTTCGAGCCATACCTACTGAATC
* *
80471564 TACCGAAATTTATGCGCTTTCGAGCCATACGTACTGAATC
1 TACCGAAATGTATGCGCTTTCGAGCCATACCTACTGAATC
80471604 TAC
1 TAC
80471607 ATGGCTTGGA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (40 bp):
TACCGAAATGTATGCGCTTTCGAGCCATACCTACTGAATC
Found at i:80474418 original size:27 final size:27
Alignment explanation
Indices: 80474388--80474532 Score: 164
Period size: 27 Copynumber: 5.4 Consensus size: 27
80474378 TCTTAATCGA
* * *
80474388 TAAAATAACTATATTGCCCTTATGGGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* * *
80474415 TAAAATGACTGTTTTGCTCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* *
80474442 TAAAATGAGTATTTTTCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
*
80474469 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* * * *
80474496 TAAAATGATTGTTTTGCCCTTTTATGG
1 TAAAATGACTATTTTGCCCTTATGTGG
*
80474523 TAATATGACT
1 TAAAATGACT
80474533 GATATAACCC
Statistics
Matches: 100, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.41
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGTGG
Found at i:80474516 original size:54 final size:54
Alignment explanation
Indices: 80474401--80474533 Score: 185
Period size: 54 Copynumber: 2.5 Consensus size: 54
80474391 AATAACTATA
* *
80474401 TTGCCCTTATGGGGTAAAATGACTGTTTTGCTCTTATGAGGTAAAATGAGTATT
1 TTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGAGGTAAAATGAGTATT
* * * *
80474455 TTTCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTGGTAAAATGATTGTT
1 TTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGAGGTAAAATGAGTATT
* * *
80474509 TTGCCCTTTTATGGTAATATGACTG
1 TTGCCCTTATGTGGTAAAATGACTG
80474534 ATATAACCCT
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.23, C:0.13, G:0.22, T:0.42
Consensus pattern (54 bp):
TTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGAGGTAAAATGAGTATT
Found at i:80474547 original size:54 final size:54
Alignment explanation
Indices: 80474401--80474548 Score: 136
Period size: 54 Copynumber: 2.7 Consensus size: 54
80474391 AATAACTATA
** * ** * *
80474401 TTGCCCTTATGGGGTAAAATGACTGTTTTGCTCTTATGAGGTAAAATGAGTATT
1 TTGCCCTTATATGGTAAAATGACTGTATAACCCTTATGTGGTAAAATGAGTATT
* * * ** * *
80474455 TTTCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTGGTAAAATGATTGTT
1 TTGCCCTTATATGGTAAAATGACTGTATAACCCTTATGTGGTAAAATGAGTATT
* *
80474509 TTGCCCTTTTATGGTAATATGACTGATATAACCC-TATGTG
1 TTGCCCTTATATGGTAAAATGACTG-TATAACCCTTATGTG
80474549 ATGTATGACT
Statistics
Matches: 80, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
54 75 0.94
55 5 0.06
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.41
Consensus pattern (54 bp):
TTGCCCTTATATGGTAAAATGACTGTATAACCCTTATGTGGTAAAATGAGTATT
Found at i:80474836 original size:18 final size:18
Alignment explanation
Indices: 80474813--80474849 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
80474803 ACTTGTATAT
*
80474813 TGTTTATTGTTACTACAC
1 TGTTTAATGTTACTACAC
*
80474831 TGTTTAATGTTACTGCAC
1 TGTTTAATGTTACTACAC
80474849 T
1 T
80474850 AGGCCAAGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.16, G:0.14, T:0.49
Consensus pattern (18 bp):
TGTTTAATGTTACTACAC
Found at i:80475758 original size:40 final size:40
Alignment explanation
Indices: 80475714--80475895 Score: 188
Period size: 40 Copynumber: 4.6 Consensus size: 40
80475704 GGGCGTTACA
80475714 CATACCTACTGAATCTACCAAAAAGTATGCACTTTCGAGC
1 CATACCTACTGAATCTACCAAAAAGTATGCACTTTCGAGC
* * *
80475754 CATACCTACTGAATCTATCAAAAAGTATGCATTTTTGAGC
1 CATACCTACTGAATCTACCAAAAAGTATGCACTTTCGAGC
* * * * *
80475794 CATAGCTACTGAATCTACTAAAATGTATGCGCTTTCGAAC
1 CATACCTACTGAATCTACCAAAAAGTATGCACTTTCGAGC
* * ** * *
80475834 CATACCTATTGATTCTA-CTGAAAGTATGC-CTTAACAAGC
1 CATACCTACTGAATCTACCAAAAAGTATGCACTT-TCGAGC
* * *
80475873 GATACCTACTGATTCTACTAAAA
1 CATACCTACTGAATCTACCAAAA
80475896 GTTGCTCAAA
Statistics
Matches: 114, Mismatches: 26, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
38 3 0.03
39 26 0.23
40 85 0.75
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.30
Consensus pattern (40 bp):
CATACCTACTGAATCTACCAAAAAGTATGCACTTTCGAGC
Found at i:80475891 original size:79 final size:80
Alignment explanation
Indices: 80475714--80475895 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
80475704 GGGCGTTACA
* *
80475714 CATACCTACTGAATCTACCAAAAAGTATGCACTTTCGAGCCATACCTACTGAATCTATCAAAAAG
1 CATACCTACTGAATCTACTAAAAAGTATGCACTTTCGAACCATACCTACTGAATCTATCAAAAAG
****
80475779 TATGCATTTTTGAGC
66 TATGCATTAACAAGC
* * * * * **
80475794 CATAGCTACTGAATCTACTAAAATGTATGCGCTTTCGAACCATACCTATTGATTCTA-CTGAAAG
1 CATACCTACTGAATCTACTAAAAAGTATGCACTTTCGAACCATACCTACTGAATCTATCAAAAAG
*
80475858 TATGCCTTAACAAGC
66 TATGCATTAACAAGC
* *
80475873 GATACCTACTGATTCTACTAAAA
1 CATACCTACTGAATCTACTAAAA
80475896 GTTGCTCAAA
Statistics
Matches: 85, Mismatches: 17, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
79 35 0.41
80 50 0.59
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.30
Consensus pattern (80 bp):
CATACCTACTGAATCTACTAAAAAGTATGCACTTTCGAACCATACCTACTGAATCTATCAAAAAG
TATGCATTAACAAGC
Found at i:80487217 original size:39 final size:39
Alignment explanation
Indices: 80487172--80487303 Score: 169
Period size: 40 Copynumber: 3.3 Consensus size: 39
80487162 GGACTAAGAT
*
80487172 CCGAAGGCATTTGTGCGGGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGTTAATAAA-CCGGGTTAAGTC
*
80487211 CCGAAGGCATTTGTGCGAGTTATTAAACCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTAATAAA-CCGGGTTAAGTC
* * *
80487251 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTTGTGCGAGTTAATA-AACC-GGGTTAAGTC
80487291 CCGAAGGCATTTG
1 CCGAAGGCATTTG
80487304 AGCTAGTCGT
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
39 35 0.42
40 41 0.49
41 7 0.08
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTAATAAACCGGGTTAAGTC
Found at i:80487325 original size:79 final size:79
Alignment explanation
Indices: 80487172--80487336 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
80487162 GGACTAAGAT
* * * *
80487172 CCGAAGGCATTTGTGCGGGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGTTATTAA
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGCGAGTCATTAA
*
80487237 ACCCGGGTTAAGTC
66 ACCCGGGTTAAATC
* * * *
80487251 CCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGGTT-TGTCCCGAAGGCATTTGAGCTAGTCGT
1 CCGAAGGCATTCGTGCGAGTTAATA-AATCC-GGGTTAAG-CCCGAAGGCATTTGAGCGAGTCAT
* * *
80487314 TATATCC-GGTTAAATT
63 TAAACCCGGGTTAAATC
80487330 CCGAAGG
1 CCGAAGG
80487337 TACGTGATTC
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
79 39 0.55
80 32 0.45
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGCGAGTCATTAA
ACCCGGGTTAAATC
Found at i:80492831 original size:40 final size:41
Alignment explanation
Indices: 80492787--80492922 Score: 125
Period size: 41 Copynumber: 3.3 Consensus size: 41
80492777 ACGTATCGAG
* *
80492787 ATAGCTTCAGCTATATAAAGCACATAGTGTGTGA-ATCGGA
1 ATAGCTTCAGCTATATAAAGCACTTAGTGTGTGAGATCAGA
** ** *
80492827 ATAGCTTTGGCTATATATGGCACTTAGTGTGTGAGA-CTGA
1 ATAGCTTCAGCTATATAAAGCACTTAGTGTGTGAGATCAGA
* * * * *
80492867 GATAGCTTCGGCTAT-TAAAGGTACTTAGTGTGCGAGATTATA
1 -ATAGCTTCAGCTATATAAA-GCACTTAGTGTGTGAGATCAGA
80492909 ATAGCTTCAGCTAT
1 ATAGCTTCAGCTAT
80492923 GCATTGGTAC
Statistics
Matches: 77, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
40 34 0.44
41 42 0.55
42 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.32
Consensus pattern (41 bp):
ATAGCTTCAGCTATATAAAGCACTTAGTGTGTGAGATCAGA
Found at i:80492893 original size:41 final size:42
Alignment explanation
Indices: 80492784--80492904 Score: 126
Period size: 41 Copynumber: 3.0 Consensus size: 42
80492774 TGTACGTATC
* *
80492784 GAGATAGCTTCAGCTATATAAA-GCACATAGTGTGTGA-ATCG
1 GAGATAGCTTCGGCTAT-TAAAGGCACTTAGTGTGTGAGATCG
* * *
80492825 GA-ATAGCTTTGGCTA-TATATGGCACTTAGTGTGTGAGA-CT
1 GAGATAGCTTCGGCTATTA-AAGGCACTTAGTGTGTGAGATCG
* *
80492865 GAGATAGCTTCGGCTATTAAAGGTACTTAGTGTGCGAGAT
1 GAGATAGCTTCGGCTATTAAAGGCACTTAGTGTGTGAGAT
80492905 TATAATAGCT
Statistics
Matches: 65, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
38 2 0.03
39 1 0.02
40 28 0.43
41 32 0.49
42 2 0.03
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (42 bp):
GAGATAGCTTCGGCTATTAAAGGCACTTAGTGTGTGAGATCG
Found at i:80500213 original size:15 final size:15
Alignment explanation
Indices: 80500193--80500222 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80500183 AATATGAAAT
80500193 ATATGTTTTGGATTG
1 ATATGTTTTGGATTG
*
80500208 ATATGTTTTGTATTG
1 ATATGTTTTGGATTG
80500223 GAATTTTTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.00, G:0.23, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTG
Found at i:80518512 original size:48 final size:48
Alignment explanation
Indices: 80518454--80518550 Score: 167
Period size: 48 Copynumber: 2.0 Consensus size: 48
80518444 AAACTATGAT
* * *
80518454 AGTGTGATGACTCTTGATGTTTTCAAATGTGTTTTTATATAGTAATGG
1 AGTGTGATGACTCATGATGTTTTCAAATATATTTTTATATAGTAATGG
80518502 AGTGTGATGACTCATGATGTTTTCAAATATATTTTTATATAGTAATGG
1 AGTGTGATGACTCATGATGTTTTCAAATATATTTTTATATAGTAATGG
80518550 A
1 A
80518551 TCCCAAATGA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.29, C:0.06, G:0.21, T:0.44
Consensus pattern (48 bp):
AGTGTGATGACTCATGATGTTTTCAAATATATTTTTATATAGTAATGG
Found at i:80520228 original size:40 final size:39
Alignment explanation
Indices: 80520178--80520381 Score: 153
Period size: 39 Copynumber: 5.2 Consensus size: 39
80520168 CAAATCCAAT
* *
80520178 CACCACCACAAAGCATGCGGGACTTTAAGCCCGAATATAA
1 CACCAGCACAAAGCATACGGGACTTT-AGCCCGAATATAA
* * *
80520218 TACCAGCACAAAGCCTACGGGACTTTAGCCCGGATATAA
1 CACCAGCACAAAGCATACGGGACTTTAGCCCGAATATAA
* * * * * *
80520257 CACCAGCACGAATGCCTTCGGGGC-TTAGCTCGGATATAA
1 CACCAGCAC-AAAGCATACGGGACTTTAGCCCGAATATAA
* * * ** *
80520296 CACCAGCACGAATGCCTTCGACAC-TTAGCCCGGATATAA
1 CACCAGCAC-AAAGCATACGGGACTTTAGCCCGAATATAA
* * * * *
80520335 CACCAGCACGAATGCCTTCGAGAC-TTAGCCCGGATATAA
1 CACCAGCAC-AAAGCATACGGGACTTTAGCCCGAATATAA
80520374 CACCAGCA
1 CACCAGCA
80520382 TGAATGCCTT
Statistics
Matches: 148, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 115 0.78
40 33 0.22
ACGTcount: A:0.32, C:0.31, G:0.20, T:0.17
Consensus pattern (39 bp):
CACCAGCACAAAGCATACGGGACTTTAGCCCGAATATAA
Found at i:80520262 original size:39 final size:39
Alignment explanation
Indices: 80520205--80520412 Score: 310
Period size: 39 Copynumber: 5.3 Consensus size: 39
80520195 CGGGACTTTA
* * * * *
80520205 AGCCCGAATATAATACCAGCAC-AAAGCCTACGGGACTTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGAGAC-TT
* *
80520244 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGAGACTT
* *
80520283 AGCTCGGATATAACACCAGCACGAATGCCTTCGACACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGAGACTT
80520322 AGCCCGGATATAACACCAGCACGAATGCCTTCGAGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGAGACTT
*
80520361 AGCCCGGATATAACACCAGCATGAATGCCTTCGAGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGAGACTT
80520400 AGCCCGGATATAA
1 AGCCCGGATATAA
80520413 TTCTCCATTA
Statistics
Matches: 156, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 145 0.93
40 11 0.07
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGAGACTT
Found at i:80528931 original size:27 final size:28
Alignment explanation
Indices: 80528900--80528957 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
80528890 CGTCACATAG
*
80528900 GGGCAAAACGGTCATCTTACCATATA-A
1 GGGCAAAACAGTCATCTTACCATATATA
* * *
80528927 GGGCAAAATAGTCATTTTATCATATATA
1 GGGCAAAACAGTCATCTTACCATATATA
80528955 GGG
1 GGG
80528958 GGTCTAGGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.28
Consensus pattern (28 bp):
GGGCAAAACAGTCATCTTACCATATATA
Found at i:80545325 original size:28 final size:29
Alignment explanation
Indices: 80545258--80545358 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
80545248 ATAGTGAATC
*
80545258 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
80545287 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
80545315 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
80545345 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80545359 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:80553238 original size:28 final size:29
Alignment explanation
Indices: 80553171--80553271 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
80553161 ATAGTGAATC
*
80553171 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
80553200 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
80553228 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
80553258 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80553272 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:80557777 original size:54 final size:54
Alignment explanation
Indices: 80557609--80557894 Score: 191
Period size: 54 Copynumber: 5.3 Consensus size: 54
80557599 TCCCTACATA
* * * * * * * **
80557609 TGTAACTCACTGAGTTGGGCCACACGGCCGTGTCGTAGGCTTTGTGCTAGACCG
1 TGTAACTCACTGACTTGTGACACATGACCATGTCGCAGGCCATGTGCTAGACCG
** * ** * * * *
80557663 TGTAACTTTCTAACTTGTGACAGGTGACCATGTCTCAGACCGTGT-CTCAG-CCTA
1 TGTAACTCACTGACTTGTGACACATGACCATGTCGCAGGCCATGTGCT-AGACC-G
* * * * * * *
80557717 TATAACTCACTGAGTTGGGCCACATGACCATGTCGCGGGCCGTGTGCCAGACCG
1 TGTAACTCACTGACTTGTGACACATGACCATGTCGCAGGCCATGTGCTAGACCG
* * * * * *
80557771 TGTAACTCTCTCATTTTTGACACATAACCATGTCGCAGGCTATGTGCTA-AGCCG
1 TGTAACTCACTGACTTGTGACACATGACCATGTCGCAGGCCATGTGCTAGA-CCG
** * * *
80557825 TGTAACTCTTTGACTTGTGACACATGACCATGTCGTAGGCCATGTGCTAGGCTG
1 TGTAACTCACTGACTTGTGACACATGACCATGTCGCAGGCCATGTGCTAGACCG
*
80557879 TGTAACACACTGACTT
1 TGTAACTCACTGACTT
80557895 AATACACCCA
Statistics
Matches: 171, Mismatches: 55, Indels: 12
0.72 0.23 0.05
Matches are distributed among these distances:
53 5 0.03
54 163 0.95
55 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.28
Consensus pattern (54 bp):
TGTAACTCACTGACTTGTGACACATGACCATGTCGCAGGCCATGTGCTAGACCG
Found at i:80557831 original size:108 final size:108
Alignment explanation
Indices: 80557607--80557871 Score: 253
Period size: 108 Copynumber: 2.5 Consensus size: 108
80557597 TGTCCCTACA
* * * * ** * *
80557607 TATGTAACTCACTGAGTTGGGCCACACGGCCGTGTCGTAGGCTTTGTGCTAGACCGTGTAACTTT
1 TATGTAACTCACTGAGTTGGGCCACATGACCATGTCGCAGGCCGTGTGCCAGACCGTGTAACTCT
** * * * *
80557672 CTAACTTGTGACAGGTGACCATGTCTCAGACCGTGTCTCAGCC
66 CTAACTTGTGACACATAACCATGTCGCAGACCATGTCTAAGCC
* *
80557715 TATATAACTCACTGAGTTGGGCCACATGACCATGTCGCGGGCCGTGTGCCAGACCGTGTAACTCT
1 TATGTAACTCACTGAGTTGGGCCACATGACCATGTCGCAGGCCGTGTGCCAGACCGTGTAACTCT
* * * * *
80557780 CTCATTTTTGACACATAACCATGTCGCAGGCTATGTGCTAAGCC
66 CTAACTTGTGACACATAACCATGTCGCAGACCATGT-CTAAGCC
* ** * * * * *
80557824 -GTGTAACTCTTTGACTTGTGACACATGACCATGTCGTAGGCCATGTGC
1 TATGTAACTCACTGAGTTGGGCCACATGACCATGTCGCAGGCCGTGTGC
80557872 TAGGCTGTGT
Statistics
Matches: 125, Mismatches: 31, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
108 119 0.95
109 6 0.05
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.28
Consensus pattern (108 bp):
TATGTAACTCACTGAGTTGGGCCACATGACCATGTCGCAGGCCGTGTGCCAGACCGTGTAACTCT
CTAACTTGTGACACATAACCATGTCGCAGACCATGTCTAAGCC
Found at i:80558828 original size:37 final size:37
Alignment explanation
Indices: 80558787--80558884 Score: 178
Period size: 37 Copynumber: 2.6 Consensus size: 37
80558777 CAATTGCTTG
*
80558787 TAAGAGCTAATCCACCTGATAACATGCCAAATGCTCA
1 TAAGAGCTAATCCACCCGATAACATGCCAAATGCTCA
80558824 TAAGAGCTAATCCACCCGATAACATGCCAAATGCTCA
1 TAAGAGCTAATCCACCCGATAACATGCCAAATGCTCA
*
80558861 TAAAAGCTAATCCACCCGATAACA
1 TAAGAGCTAATCCACCCGATAACA
80558885 CCCCAAATCA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.40, C:0.29, G:0.12, T:0.19
Consensus pattern (37 bp):
TAAGAGCTAATCCACCCGATAACATGCCAAATGCTCA
Found at i:80565607 original size:48 final size:48
Alignment explanation
Indices: 80565555--80565729 Score: 179
Period size: 48 Copynumber: 3.6 Consensus size: 48
80565545 ATGTAAGTGT
* *
80565555 CGATGCCATGTCCCAGACATGGTCTTACACTACCACACATATCAACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTACCTCACATATCAACGC
* ** ***
80565603 CGATGCCATGTCCCAGTCATCATCTTACACTGGTTCACATATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTACCTCACATATCAACGC
* * * * * * * *
80565651 CGATGCCATGTGCGAGACATGGTCTTACGCCGGATCTCATATATCGATGC
1 CGATGCCATGTCCCAGACATGGTCTTAC-AC-TACCTCACATATCAACGC
*
80565701 CAATGCCATGTCCCAGACATGGTCTTACA
1 CGATGCCATGTCCCAGACATGGTCTTACA
80565730 TGGGATCTCA
Statistics
Matches: 100, Mismatches: 25, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
48 63 0.63
49 1 0.01
50 36 0.36
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTACCTCACATATCAACGC
Found at i:80565709 original size:50 final size:50
Alignment explanation
Indices: 80565653--80565978 Score: 268
Period size: 50 Copynumber: 6.6 Consensus size: 50
80565643 ATCAACGCCG
* * *** *
80565653 ATGCCATGTGCGAGACATGGTCTTACGCCGGATCTCATATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATATTGATGCCA
*
80565703 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATTTATTGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATATTGATGCCA
* * * *
80565753 ATGTCATGTCCCAAATATGGTCTTACATGGGATCTCATATATTGATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATATTGATGCCA
* * * * * * *
80565803 ATGTCATGTCCCAAACATGGTTTTACATGGGATCTC--GTATCGGTACCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATATTGATGCCA
* * * ** * * * **
80565851 ATTCCATGTCCCAAACATGGTCTTATACAGGACCTC--ATCTCGATGCTG
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATATTGATGCCA
* * * * * * * *
80565899 ATACCATATCTCAGATATGGTCTTATATGGGGTCTC--ATATCGATGCTA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATATTGATGCCA
* *
80565947 ATACCATGTCCCAGACATGGTCTTACACGGGA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGA
80565979 CCTTATCTCG
Statistics
Matches: 227, Mismatches: 49, Indels: 2
0.82 0.18 0.01
Matches are distributed among these distances:
48 105 0.46
50 122 0.54
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.30
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATATTGATGCCA
Found at i:80565922 original size:48 final size:48
Alignment explanation
Indices: 80565854--80565989 Score: 155
Period size: 48 Copynumber: 2.8 Consensus size: 48
80565844 GGTACCAATT
* * * *
80565854 CCATGTCCCAAACATGGTCTTATACAGGACCTCATCTCGATGCTGATA
1 CCATATCCCAGACATGGTCTTATACGGGACCTCATCTCGATGCTAATA
* * * ** *
80565902 CCATATCTCAGATATGGTCTTATATGGGGTCTCATATCGATGCTAATA
1 CCATATCCCAGACATGGTCTTATACGGGACCTCATCTCGATGCTAATA
* * *
80565950 CCATGTCCCAGACATGGTCTTACACGGGACCTTATCTCGA
1 CCATATCCCAGACATGGTCTTATACGGGACCTCATCTCGA
80565990 AAGTTTGTCG
Statistics
Matches: 69, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (48 bp):
CCATATCCCAGACATGGTCTTATACGGGACCTCATCTCGATGCTAATA
Found at i:80568765 original size:27 final size:27
Alignment explanation
Indices: 80568667--80568759 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
80568657 TACATCACAT
*
80568667 AGGGCAAAACAGTCATCTTACCATATA
1 AGGGCAAAACAGTCATCTTACCAAATA
* * * *
80568694 ATGGCAAAATAGTCATCGTACCACATA
1 AGGGCAAAACAGTCATCTTACCAAATA
* *
80568721 AGGGCAAAACAGTTATTTTACCAAATA
1 AGGGCAAAACAGTCATCTTACCAAATA
80568748 AGGGCAAAACAG
1 AGGGCAAAACAG
80568760 ACATTTATAA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.20
Consensus pattern (27 bp):
AGGGCAAAACAGTCATCTTACCAAATA
Found at i:80571625 original size:40 final size:40
Alignment explanation
Indices: 80571570--80571777 Score: 294
Period size: 40 Copynumber: 5.2 Consensus size: 40
80571560 TGAATGATAC
* * *
80571570 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
80571610 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
80571650 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
80571690 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
80571730 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
80571770 CC-GGCTAA
1 CCGGGCTAA
80571778 ATTCCGAAGA
Statistics
Matches: 152, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 5 0.03
40 145 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:80573797 original size:93 final size:93
Alignment explanation
Indices: 80573689--80573859 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
80573679 GCCCCTAAGT
* * *
80573689 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
80573754 TGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
80573782 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80573847 CGAGTTCGGATGC
66 CGAGTTCGGATGC
80573860 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:80573856 original size:46 final size:46
Alignment explanation
Indices: 80573684--80573856 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
80573674 AACCCGCCCC
* * * *
80573684 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
80573730 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
80573778 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
80573823 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
80573857 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.58
47 28 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Done.