Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 261 of 410
Found at i:80576275 original size:15 final size:15
Alignment explanation
Indices: 80576249--80576304 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
80576239 CAAGGAAACC
80576249 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
80576264 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
80576279 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
80576294 GAATAAAGAAA
1 GAATAAAGAAA
80576305 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:80579328 original size:46 final size:46
Alignment explanation
Indices: 80579261--80579435 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
80579251 AACCCTCCCC
*
80579261 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCA
* * *
80579307 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-TTAGCATCCA
* * * ** *
80579353 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCA
*
80579400 TAAGTGAATTCGGACTCAACTCAACGAGTTCGGATG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
80579436 CTCAACCATC
Statistics
Matches: 105, Mismatches: 19, Indels: 10
0.78 0.14 0.07
Matches are distributed among these distances:
45 2 0.02
46 67 0.64
47 34 0.32
48 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCA
Found at i:80579372 original size:93 final size:93
Alignment explanation
Indices: 80579266--80579436 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
80579256 TCCCCTAAGT
* **
80579266 GAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTAGCATCCATAAGTGAACTCGGACTCAACTCAA
80579331 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
80579359 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAATTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTAGCATCCATAAGTGAACTCGGACTCAACTCAA
80579424 CGAGTTCGGATGC
66 CGAGTTCGGATGC
80579437 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTAGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:80590815 original size:93 final size:93
Alignment explanation
Indices: 80590703--80590874 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
80590693 GCCCATAAGT
*
80590703 GAACTCGGACTCAACTCAACGACCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGACCTC-GGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
80590767 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
**
80590796 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGACCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80590861 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
80590875 CAAATATCCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGACCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:80590868 original size:46 final size:46
Alignment explanation
Indices: 80590695--80590870 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
80590685 TGTAACCCGC
** *
80590695 CCATAAGTGAACTCGGACTCAACTCAACGACCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACGCTCGCAT
* *
80590741 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
80590791 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
80590834 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
80590871 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 4 0.04
46 65 0.59
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:80590889 original size:46 final size:45
Alignment explanation
Indices: 80590746--80590889 Score: 148
Period size: 46 Copynumber: 3.1 Consensus size: 45
80590736 CGCATCCATA
* *
80590746 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
80590794 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
80590839 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
80590885 AGTGA
1 AGTGA
80590890 CATGTCACTT
Statistics
Matches: 78, Mismatches: 13, Indels: 12
0.76 0.13 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.47
47 31 0.40
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:80594427 original size:20 final size:20
Alignment explanation
Indices: 80594402--80594442 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
80594392 ACATTTACCG
80594402 TCAAAACATGAACTATCGCT
1 TCAAAACATGAACTATCGCT
80594422 TCAAAACATGAACTATCGCT
1 TCAAAACATGAACTATCGCT
80594442 T
1 T
80594443 TACATTCTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.24, G:0.10, T:0.27
Consensus pattern (20 bp):
TCAAAACATGAACTATCGCT
Found at i:80601994 original size:50 final size:50
Alignment explanation
Indices: 80601922--80602104 Score: 305
Period size: 50 Copynumber: 3.7 Consensus size: 50
80601912 AACGTCTTTT
*
80601922 CCATGTCCAAGACATGGTCTTACACGGGATCTCATATATTGATGCCAATG
1 CCATGTCCAAGACATGGTCTTACATGGGATCTCATATATTGATGCCAATG
* *
80601972 CCATGTTCCAAG-CATGGTCTTACATGGGATCTCATATATCGATGCCAATT
1 CCATG-TCCAAGACATGGTCTTACATGGGATCTCATATATTGATGCCAATG
*
80602022 CCATGTCCCAGACATGGTCTTACATGGGATCTCATATATTGATGCCAATG
1 CCATGTCCAAGACATGGTCTTACATGGGATCTCATATATTGATGCCAATG
*
80602072 CCATGTCCCAGACATGGTCTTACATGGGATCTC
1 CCATGTCCAAGACATGGTCTTACATGGGATCTC
80602105 GTATCGGTGT
Statistics
Matches: 125, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
49 5 0.04
50 114 0.91
51 6 0.05
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (50 bp):
CCATGTCCAAGACATGGTCTTACATGGGATCTCATATATTGATGCCAATG
Found at i:80602041 original size:100 final size:98
Alignment explanation
Indices: 80601871--80602244 Score: 353
Period size: 100 Copynumber: 3.8 Consensus size: 98
80601861 ATCAATGTCG
* * * * * * ** *
80601871 ATGCCATGTCCCAGACATGGTCTTACACT-GGCTCACATATCAACGTCTTTTCCATGTCCAAGAC
1 ATGCCATGTCCAAGACATGGTCTTACA-TGGGATCTCATATCGATGCCAATTCCATGTCCCAGAC
80601935 ATGGTCTTACACGGGATCTCATATATTGATGCCA
65 ATGGTCTTACACGGGATCTCATATATTGATGCCA
80601969 ATGCCATGTTCCAAG-CATGGTCTTACATGGGATCTCATATATCGATGCCAATTCCATGTCCCAG
1 ATGCCATG-TCCAAGACATGGTCTTACATGGGATCTC--ATATCGATGCCAATTCCATGTCCCAG
*
80602033 ACATGGTCTTACATGGGATCTCATATATTGATGCCA
63 ACATGGTCTTACACGGGATCTCATATATTGATGCCA
* * * *** *
80602069 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCGTATCGGTGTTGATGCCATGTCCCAGACA
1 ATGCCATGTCCAAGACATGGTCTTACATGGGATCTCATATCGATGCCAATTCCATGTCCCAGACA
* * * * * *
80602134 TGGTCTTATACGAGACCTC--ATCTTAATG-TA
66 TGGTCTTACACGGGATCTCATATATTGATGCCA
* * * * * * * * * * *
80602164 GATTCCATATCCCAGATATGGTCTTATACGGGGTCTCATATCCATGTCGATGCCATGTCCCAGAC
1 -ATGCCATGTCCAAGACATGGTCTTACATGGGATCTCATATCGATGCCAATTCCATGTCCCAGAC
*
80602229 ATGGTCTTATACGGGA
65 ATGGTCTTACACGGGA
80602245 CCTTATCTCG
Statistics
Matches: 235, Mismatches: 35, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
95 1 0.00
96 76 0.32
97 1 0.00
98 63 0.27
99 10 0.04
100 84 0.36
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (98 bp):
ATGCCATGTCCAAGACATGGTCTTACATGGGATCTCATATCGATGCCAATTCCATGTCCCAGACA
TGGTCTTACACGGGATCTCATATATTGATGCCA
Found at i:80602238 original size:48 final size:48
Alignment explanation
Indices: 80601842--80602244 Score: 349
Period size: 48 Copynumber: 8.3 Consensus size: 48
80601832 GGCTATTACA
* * * *
80601842 GTCTTACACTGGCTCACATATCAATGTCGATGCCATGTCCCAGACATG
1 GTCTTACACGGGATCTCATATCGATGTCGATGCCATGTCCCAGACATG
* * * * * ** * *
80601890 GTCTTACACTGGCTCACATATCAACGTCTTTTCCATGTCCAAGACATG
1 GTCTTACACGGGATCTCATATCGATGTCGATGCCATGTCCCAGACATG
* * * *
80601938 GTCTTACACGGGATCTCATATATTGATGCCAATGCCATGTTCCA-AGCATG
1 GTCTTACACGGGATCTC--ATATCGATGTCGATGCCATGTCCCAGA-CATG
* * * *
80601988 GTCTTACATGGGATCTCATATATCGATGCCAATTCCATGTCCCAGACATG
1 GTCTTACACGGGATCTC--ATATCGATGTCGATGCCATGTCCCAGACATG
* * * *
80602038 GTCTTACATGGGATCTCATATATTGATGCCAATGCCATGTCCCAGACATG
1 GTCTTACACGGGATCTC--ATATCGATGTCGATGCCATGTCCCAGACATG
* * * *
80602088 GTCTTACATGGGATCTCGTATCGGTGTTGATGCCATGTCCCAGACATG
1 GTCTTACACGGGATCTCATATCGATGTCGATGCCATGTCCCAGACATG
* * * * ** * * * *
80602136 GTCTTATACGAGACCTCATCTTAATGTAGATTCCATATCCCAGATATG
1 GTCTTACACGGGATCTCATATCGATGTCGATGCCATGTCCCAGACATG
* * *
80602184 GTCTTATACGGGGTCTCATATCCATGTCGATGCCATGTCCCAGACATG
1 GTCTTACACGGGATCTCATATCGATGTCGATGCCATGTCCCAGACATG
*
80602232 GTCTTATACGGGA
1 GTCTTACACGGGA
80602245 CCTTATCTCG
Statistics
Matches: 298, Mismatches: 53, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
48 167 0.56
49 1 0.00
50 129 0.43
51 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (48 bp):
GTCTTACACGGGATCTCATATCGATGTCGATGCCATGTCCCAGACATG
Found at i:80610003 original size:13 final size:13
Alignment explanation
Indices: 80609975--80610017 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
80609965 TTTCATACTC
*
80609975 TGTTTC-AAACTA
1 TGTTTCTAAGCTA
*
80609987 TGTTTCTAAGTTA
1 TGTTTCTAAGCTA
*
80610000 TGTTTTTAAGCTA
1 TGTTTCTAAGCTA
80610013 TGTTT
1 TGTTT
80610018 TAAAAATATG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
12 6 0.23
13 20 0.77
ACGTcount: A:0.23, C:0.09, G:0.14, T:0.53
Consensus pattern (13 bp):
TGTTTCTAAGCTA
Found at i:80627515 original size:38 final size:39
Alignment explanation
Indices: 80627419--80627569 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
80627409 AATGTTCGAG
80627419 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
80627458 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
80627497 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
80627535 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
80627570 GGTTACCATA
Statistics
Matches: 106, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
38 36 0.34
39 53 0.50
40 17 0.16
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:80627515 original size:77 final size:79
Alignment explanation
Indices: 80627419--80627569 Score: 252
Period size: 77 Copynumber: 1.9 Consensus size: 79
80627409 AATGTTCGAG
80627419 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCCGAAGGC
80627483 AATTGTGCGAGCTA
66 AATTGTGCGAGCTA
* * *
80627497 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCCGAAGGC
*
80627561 ATTTGTGCG
66 AATTGTGCG
80627570 GGTTACCATA
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
77 46 0.68
78 22 0.32
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGCTA
Found at i:80627585 original size:40 final size:39
Alignment explanation
Indices: 80627419--80627599 Score: 229
Period size: 39 Copynumber: 4.6 Consensus size: 39
80627409 AATGTTCGAG
*
80627419 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
80627458 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
80627497 TGAT-ACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * * * *
80627535 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTA
** *
80627575 CCATAACCGGGCTATGTCCCGAAGG
1 TGATAACCGGGCTAAG-CCCGAAGG
80627600 TGTTTTGAAC
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 35 0.28
39 52 0.41
40 40 0.31
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:80635446 original size:39 final size:39
Alignment explanation
Indices: 80635392--80635542 Score: 241
Period size: 39 Copynumber: 3.9 Consensus size: 39
80635382 AATGTTCGAG
80635392 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
80635431 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
80635470 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
80635509 TGA-ATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
80635543 GGTTACCATA
Statistics
Matches: 105, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
38 10 0.10
39 95 0.90
ACGTcount: A:0.24, C:0.23, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:80635558 original size:78 final size:78
Alignment explanation
Indices: 80635398--80635572 Score: 235
Period size: 78 Copynumber: 2.2 Consensus size: 78
80635388 CGAGTGATAT
80635398 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAATTGTG
** *
80635463 CGAGCTATGATAC
66 CGAGCTACCATAA
* * * *
80635476 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGA-ATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAG-CCCGAAGGCAATTGT
* *
80635540 GCGGGTTACCATAA
65 GCGAGCTACCATAA
*
80635554 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAG-CCCGAAGG
80635573 TGTTTTGAAC
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
77 11 0.13
78 66 0.78
79 8 0.09
ACGTcount: A:0.23, C:0.24, G:0.32, T:0.21
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAATTGTG
CGAGCTACCATAA
Found at i:80637438 original size:40 final size:40
Alignment explanation
Indices: 80637383--80637462 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
80637373 TCTTTGGAGA
80637383 GAAAACTGCTCTCCAAATTCCCCCTCCAAAATCCTTGTGT
1 GAAAACTGCTCTCCAAATTCCCCCTCCAAAATCCTTGTGT
80637423 GAAAACTGCTCTCCAAATTCCCCCTCCAAAATCCTTGTGT
1 GAAAACTGCTCTCCAAATTCCCCCTCCAAAATCCTTGTGT
80637463 CCTCTTTCTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.28, C:0.35, G:0.10, T:0.28
Consensus pattern (40 bp):
GAAAACTGCTCTCCAAATTCCCCCTCCAAAATCCTTGTGT
Found at i:80639074 original size:24 final size:23
Alignment explanation
Indices: 80639031--80639076 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
80639021 TGTAAAAATC
*
80639031 AAAAAAAAAAATTTGCAAATGAA
1 AAAAAAAAAAACTTGCAAATGAA
80639054 AAAAAAACAAAAGCTTG-AAATGA
1 AAAAAAA-AAAA-CTTGCAAATGA
80639077 TTTGTGTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 7 0.35
24 10 0.50
25 3 0.15
ACGTcount: A:0.67, C:0.07, G:0.11, T:0.15
Consensus pattern (23 bp):
AAAAAAAAAAACTTGCAAATGAA
Found at i:80640440 original size:13 final size:13
Alignment explanation
Indices: 80640422--80640446 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80640412 CCGTTCCCTC
80640422 CACACGGTTGAGA
1 CACACGGTTGAGA
80640435 CACACGGTTGAG
1 CACACGGTTGAG
80640447 TATCTGACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.24, G:0.32, T:0.16
Consensus pattern (13 bp):
CACACGGTTGAGA
Found at i:80645152 original size:40 final size:39
Alignment explanation
Indices: 80644971--80645122 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
80644961 AATGTTCGAG
80644971 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
80645010 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
80645049 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
80645088 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
80645123 GGTTACCATA
Statistics
Matches: 106, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:80653035 original size:39 final size:39
Alignment explanation
Indices: 80652981--80653125 Score: 189
Period size: 39 Copynumber: 3.9 Consensus size: 39
80652971 TGAATGTTCG
80652981 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
80653020 ATGATATCCGGGCTAAGCCCGAAGGCAATTGT----GC-
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
*
80653054 --GATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
* * *
80653090 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 ATGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
80653126 GGTTACCATA
Statistics
Matches: 94, Mismatches: 3, Indels: 17
0.82 0.03 0.15
Matches are distributed among these distances:
31 25 0.27
32 4 0.04
35 3 0.03
38 4 0.04
39 41 0.44
40 17 0.18
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (39 bp):
ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
Found at i:80653065 original size:31 final size:32
Alignment explanation
Indices: 80653022--80653086 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 32
80653012 TGCGAGCTAT
80653022 GATATCCGGGCTAAGCCCGAAGGCAATTGTGC
1 GATATCCGGGCTAAGCCCGAAGGCAATTGTGC
80653054 GATA-CCGGGCTAAGCCCGAAGGCAATTGTGC
1 GATATCCGGGCTAAGCCCGAAGGCAATTGTGC
80653085 GA
1 GA
80653087 GTTGTGATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 29 0.88
32 4 0.12
ACGTcount: A:0.26, C:0.25, G:0.32, T:0.17
Consensus pattern (32 bp):
GATATCCGGGCTAAGCCCGAAGGCAATTGTGC
Found at i:80653101 original size:70 final size:72
Alignment explanation
Indices: 80652983--80653125 Score: 236
Period size: 70 Copynumber: 2.0 Consensus size: 72
80652973 AATGTTCGAT
80652983 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAG-CCCGAAGGCA
1 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCCGAAGGCA
80653047 ATTGTGC
66 ATTGTGC
* * *
80653054 GATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCCGAAGGCA
*
80653118 TTTGTGC
66 ATTGTGC
80653125 G
1 G
80653126 GGTTACCATA
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
70 46 0.69
71 21 0.31
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (72 bp):
GATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCCGAAGGCA
ATTGTGC
Found at i:80653141 original size:40 final size:40
Alignment explanation
Indices: 80653057--80653154 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 40
80653047 ATTGTGCGAT
***
80653057 ACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATA
1 ACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATA
* * * *
80653096 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATA
1 ACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATA
*
80653136 ACCGGGCTATGT-CCGAAGG
1 ACCGGGCTAAGTCCCGAAGG
80653155 TGTTTTGAAC
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
39 16 0.33
40 32 0.67
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.22
Consensus pattern (40 bp):
ACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATA
Found at i:80658172 original size:46 final size:46
Alignment explanation
Indices: 80658122--80658297 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
80658112 TGGTTGAGCA
80658122 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80658168 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80658213 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
80658261 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80658298 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80658278 original size:93 final size:93
Alignment explanation
Indices: 80658119--80658289 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
80658109 GGATGGTTGA
* *
80658119 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80658184 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80658212 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80658277 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80658290 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80661251 original size:15 final size:15
Alignment explanation
Indices: 80661231--80661299 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
80661221 GTATCTTGGG
80661231 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
80661246 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
80661261 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
80661276 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
80661291 TTTCTTTAT
1 TTTCTTTAT
80661300 TCGTTTTCTT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:80661300 original size:30 final size:30
Alignment explanation
Indices: 80661222--80661301 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
80661212 CATAGTATCG
* * *
80661222 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
* *
80661252 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
80661282 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
80661302 GTTTTCTTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 1 0.02
30 41 0.95
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:80663730 original size:45 final size:45
Alignment explanation
Indices: 80663681--80663854 Score: 203
Period size: 45 Copynumber: 3.8 Consensus size: 45
80663671 TGGTTGAGCA
80663681 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
* * *
80663726 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-T--G
* *
80663771 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AATG
* *
80663819 -CCCAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80663855 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 6 0.05
43 1 0.01
44 2 0.02
45 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
Found at i:80663835 original size:92 final size:92
Alignment explanation
Indices: 80663678--80663846 Score: 286
Period size: 92 Copynumber: 1.8 Consensus size: 92
80663668 GGATGGTTGA
* * *
80663678 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAACGTCCCAACTCGTTGAGTT
80663743 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
80663770 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG-CCCAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGC-AACGTCCCAACTCGTTGAGT
80663834 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
80663847 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 69 0.96
93 3 0.04
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAACGTCCCAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80665610 original size:45 final size:45
Alignment explanation
Indices: 80665546--80665707 Score: 197
Period size: 45 Copynumber: 3.6 Consensus size: 45
80665536 TATCGTACGG
* * *
80665546 TACTATTCGGGCTTTTGAGCCTAGCAGGCTATGATGTCGATGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGTCGATGAGA
* * *
80665591 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAAT-TCCGATGGGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGT-CGATGAGA
* * *
80665636 TACTATTCGGGCCTTCGAGACTAGCAGGCTATAATGTCGGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGTCGATGAGA
80665681 TGA-TA-TCGGG-CTTCGAGCCTAGCAGGC
1 T-ACTATTCGGGCCTTCGAGCCTAGCAGGC
80665708 GAAATGCCGG
Statistics
Matches: 103, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
43 16 0.16
44 6 0.06
45 79 0.77
46 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (45 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGTCGATGAGA
Found at i:80690837 original size:22 final size:22
Alignment explanation
Indices: 80690807--80690852 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
80690797 GCAGTAGGAT
80690807 AGTTCAGTGGATTACCAACTGA
1 AGTTCAGTGGATTACCAACTGA
* *
80690829 AGTTTAGTGGATTACCAATTGA
1 AGTTCAGTGGATTACCAACTGA
80690851 AG
1 AG
80690853 ATCCAAAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (22 bp):
AGTTCAGTGGATTACCAACTGA
Found at i:80691440 original size:35 final size:35
Alignment explanation
Indices: 80691390--80691541 Score: 130
Period size: 35 Copynumber: 4.3 Consensus size: 35
80691380 CAATCCAACC
* * * * *
80691390 AAACATACCAGATGCTCCTAAGATCCAATCCATCT-
1 AAACACACCA-ATGCTCATAAGAGCTAATCCCTCTG
** *
80691425 AGAACACACCAATGCTTGTAAAAGCTAATCCCT-TCG
1 A-AACACACCAATGCTCATAAGAGCTAATCCCTCT-G
80691461 AAACACACCAATGCTCATAAGAGCTAATCCCTCTG
1 AAACACACCAATGCTCATAAGAGCTAATCCCTCTG
* * * * *
80691496 AAACACACCAGTGCTCGTAAAAGTTAATCCAATC-G
1 AAACACACCAATGCTCATAAGAGCTAATCC-CTCTG
80691531 AAACACACCAA
1 AAACACACCAA
80691542 AACAGAGAGT
Statistics
Matches: 96, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
34 1 0.01
35 83 0.86
36 12 0.12
ACGTcount: A:0.39, C:0.30, G:0.11, T:0.20
Consensus pattern (35 bp):
AAACACACCAATGCTCATAAGAGCTAATCCCTCTG
Found at i:80691501 original size:70 final size:70
Alignment explanation
Indices: 80691381--80691541 Score: 191
Period size: 70 Copynumber: 2.3 Consensus size: 70
80691371 GTACATCGAC
* * * * *
80691381 AATCCAA-CCAAACATACCAGATGCTCCTAAGATCCAATCCATCTAGAACACACCAATGCTTGTA
1 AATCCAATCGAAACACACCA-ATGCTCATAAGAGCCAATCCATCTAGAACACACCAATGCTCGTA
80691445 AAAGCT
65 AAAGCT
** * * *
80691451 AATCCCTTCGAAACACACCAATGCTCATAAGAGCTAATCCCTCT-GAAACACACCAGTGCTCGTA
1 AATCCAATCGAAACACACCAATGCTCATAAGAGCCAATCCATCTAG-AACACACCAATGCTCGTA
*
80691515 AAAGTT
65 AAAGCT
80691521 AATCCAATCGAAACACACCAA
1 AATCCAATCGAAACACACCAA
80691542 AACAGAGAGT
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
69 1 0.01
70 65 0.86
71 10 0.13
ACGTcount: A:0.40, C:0.30, G:0.11, T:0.19
Consensus pattern (70 bp):
AATCCAATCGAAACACACCAATGCTCATAAGAGCCAATCCATCTAGAACACACCAATGCTCGTAA
AAGCT
Found at i:80692305 original size:16 final size:15
Alignment explanation
Indices: 80692279--80692309 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
80692269 GAGAAAGTTT
80692279 AGTTTTTAAAAATTA
1 AGTTTTTAAAAATTA
80692294 AGTTTTTAAAAATTA
1 AGTTTTTAAAAATTA
80692309 A
1 A
80692310 AAATTTGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (15 bp):
AGTTTTTAAAAATTA
Found at i:80705752 original size:16 final size:16
Alignment explanation
Indices: 80705727--80705757 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80705717 CCCCAATTTC
*
80705727 ATTCATTCATTCGTTT
1 ATTCACTCATTCGTTT
80705743 ATTCACTCATTCGTT
1 ATTCACTCATTCGTT
80705758 CATTTGTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.23, G:0.06, T:0.52
Consensus pattern (16 bp):
ATTCACTCATTCGTTT
Found at i:80705759 original size:24 final size:24
Alignment explanation
Indices: 80705725--80705771 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
80705715 TGCCCCAATT
80705725 TCATTCATTCATTCGTTTATTCAC
1 TCATTCATTCATTCGTTTATTCAC
* *
80705749 TCATTCGTTCATTTGTTTATTCA
1 TCATTCATTCATTCGTTTATTCA
80705772 GAAGCATCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.19, C:0.21, G:0.06, T:0.53
Consensus pattern (24 bp):
TCATTCATTCATTCGTTTATTCAC
Found at i:80708202 original size:32 final size:32
Alignment explanation
Indices: 80708166--80708228 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
80708156 GGAAGAGGAA
*
80708166 GTACCAA-AGCACTACTCATCTCAGTAAAGTGC
1 GTACCAAGA-CACTACACATCTCAGTAAAGTGC
80708198 GTACCAAGACACTACACATCTCAGTAAAGTG
1 GTACCAAGACACTACACATCTCAGTAAAGTG
80708229 TAAAGCCTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 28 0.97
33 1 0.03
ACGTcount: A:0.37, C:0.27, G:0.16, T:0.21
Consensus pattern (32 bp):
GTACCAAGACACTACACATCTCAGTAAAGTGC
Found at i:80709957 original size:50 final size:50
Alignment explanation
Indices: 80709898--80709994 Score: 194
Period size: 50 Copynumber: 1.9 Consensus size: 50
80709888 ATGACTAATA
80709898 CTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTACAATG
1 CTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTACAATG
80709948 CTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTACA
1 CTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTACA
80709995 TACTCACATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (50 bp):
CTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTACAATG
Found at i:80710021 original size:50 final size:50
Alignment explanation
Indices: 80709894--80710006 Score: 165
Period size: 50 Copynumber: 2.3 Consensus size: 50
80709884 TTACATGACT
* *
80709894 AATACTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTAC
1 AATACTACATTAATAACAAGACAATGCCTTTGGCTAAATCATAATATTAC
* * *
80709944 AATGCTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTAC
1 AATACTACATTAATAACAAGACAATGCCTTTGGCTAAATCATAATATTAC
80709994 -ATACTCACATTAA
1 AATACT-ACATTAA
80710007 AACCCTATAC
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
49 4 0.07
50 55 0.93
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (50 bp):
AATACTACATTAATAACAAGACAATGCCTTTGGCTAAATCATAATATTAC
Found at i:80711811 original size:20 final size:18
Alignment explanation
Indices: 80711777--80711813 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
80711767 GCAACTCATA
80711777 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
80711795 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
80711814 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:80719115 original size:42 final size:42
Alignment explanation
Indices: 80719040--80719291 Score: 360
Period size: 42 Copynumber: 6.0 Consensus size: 42
80719030 GAGAACATTT
* *
80719040 ATTGCATTTAGAGGCCTAGGTGTGTAGGTCCATTTACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
* * *
80719082 ATTGTATTTAGAGGCCCAGATGTGGAGGCCCATTTACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
* * *
80719124 ATTACTTTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
* *
80719166 ATTGCATTTAGAGGCCCAGGTGTTGAGGCCCATTTACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
* * *
80719208 ATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTGACTTTTT
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
* * *
80719250 ATTGCATTTAGAGACCTAAGTGTGGAGGTCCATTTACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
80719292 TAGTTTACTT
Statistics
Matches: 185, Mismatches: 25, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 185 1.00
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.37
Consensus pattern (42 bp):
ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
Found at i:80727840 original size:27 final size:28
Alignment explanation
Indices: 80727783--80727852 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
80727773 AAACTTGTAC
*
80727783 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
80727811 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
80727838 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
80727853 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:80727863 original size:27 final size:27
Alignment explanation
Indices: 80727783--80727864 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
80727773 AAACTTGTAC
* * *
80727783 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
80727811 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
80727838 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
80727865 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:80735778 original size:27 final size:28
Alignment explanation
Indices: 80735721--80735790 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
80735711 AAACTTGTAC
*
80735721 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
80735749 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
80735776 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
80735791 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:80735801 original size:27 final size:27
Alignment explanation
Indices: 80735721--80735802 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
80735711 AAACTTGTAC
* * *
80735721 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
80735749 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
80735776 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
80735803 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:80738355 original size:56 final size:55
Alignment explanation
Indices: 80738296--80738492 Score: 234
Period size: 56 Copynumber: 3.7 Consensus size: 55
80738286 CAGATAGGGT
* * *
80738296 CTTACTCGTACACATATATCGGAGTCATATATCGATGCCAACGTATTAAACGTGGT
1 CTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTATTAAA-GTGGA
80738352 CTTACTCGCACACATATATCGGAGTCACATATCGATG--AACG---T--A---GA
1 CTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTATTAAAGTGGA
* * *
80738397 CTTACTTGTACATATATATCGGAGTCACATATCGATGCCAACGTATTAAAGGTGGA
1 CTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTATTAAA-GTGGA
* *
80738453 CTTACTCGCACATATATACCGGAGTCACATATCGATGCCA
1 CTTACTCGCACACATATATCGGAGTCACATATCGATGCCA
80738493 CATATACTTC
Statistics
Matches: 121, Mismatches: 9, Indels: 22
0.80 0.06 0.14
Matches are distributed among these distances:
45 35 0.29
47 4 0.03
49 1 0.01
50 1 0.01
51 1 0.01
52 1 0.01
54 4 0.03
56 74 0.61
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (55 bp):
CTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTATTAAAGTGGA
Found at i:80738438 original size:101 final size:101
Alignment explanation
Indices: 80738296--80738489 Score: 325
Period size: 101 Copynumber: 1.9 Consensus size: 101
80738286 CAGATAGGGT
* *
80738296 CTTACTCGTACACATATATCGGAGTCATATATCGATGCCAACGTATTAAACGTGGTCTTACTCGC
1 CTTACTCGTACACATATATCGGAGTCACATATCGATGCCAACGTATTAAACGTGGACTTACTCGC
*
80738361 ACACATATATCGGAGTCACATATCGATGAACGTAGA
66 ACACATATACCGGAGTCACATATCGATGAACGTAGA
* * *
80738397 CTTACTTGTACATATATATCGGAGTCACATATCGATGCCAACGTATTAAAGGTGGACTTACTCGC
1 CTTACTCGTACACATATATCGGAGTCACATATCGATGCCAACGTATTAAACGTGGACTTACTCGC
*
80738462 ACATATATACCGGAGTCACATATCGATG
66 ACACATATACCGGAGTCACATATCGATG
80738490 CCACATATAC
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
101 86 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.28
Consensus pattern (101 bp):
CTTACTCGTACACATATATCGGAGTCACATATCGATGCCAACGTATTAAACGTGGACTTACTCGC
ACACATATACCGGAGTCACATATCGATGAACGTAGA
Found at i:80741797 original size:28 final size:29
Alignment explanation
Indices: 80741724--80741867 Score: 113
Period size: 28 Copynumber: 5.1 Consensus size: 29
80741714 ACATACATGT
* *
80741724 ATATGG-CCTTTAGGCCCAA-TCTA-ATTT
1 ATATGGCCCATTAGGCCCAATTC-ACATTC
** * *
80741751 ATATGGCCCATCCGACCCAATTCACGTTC
1 ATATGGCCCATTAGGCCCAATTCACATTC
*
80741780 ATATGGCCTATT-GGCCCAATTCACATTC
1 ATATGGCCCATTAGGCCCAATTCACATTC
* *
80741808 ATATGGCCCATTAGGCCCAA-TCCCATTT
1 ATATGGCCCATTAGGCCCAATTCACATTC
* * *
80741836 ATATGGCTCATCCA-GCCCAAATCACATT-
1 ATATGGCCCAT-TAGGCCCAATTCACATTC
80741864 ATAT
1 ATAT
80741868 TCATGCTCAC
Statistics
Matches: 95, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
27 6 0.06
28 61 0.64
29 28 0.29
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAATTCACATTC
Found at i:80741840 original size:56 final size:56
Alignment explanation
Indices: 80741718--80741842 Score: 130
Period size: 56 Copynumber: 2.2 Consensus size: 56
80741708 ACCTCTACAT
* * *
80741718 ACATGTATATGGCCTTTAGGCCCAATCTAATTTATATGGCCCATCCGACCCAATTC
1 ACATTTATATGGCCTTTAGGCCCAATCTAATTCATATGGCCCATCAGACCCAATTC
* * * *
80741774 ACGTTCATATGGCCTATT-GGCCCAAT-TCACATTCATATGGCCCATTAGGCCCAA-TC
1 ACATTTATATGGCCT-TTAGGCCCAATCT-A-ATTCATATGGCCCATCAGACCCAATTC
*
80741830 CCATTTATATGGC
1 ACATTTATATGGC
80741843 TCATCCAGCC
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
55 1 0.02
56 33 0.59
57 22 0.39
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (56 bp):
ACATTTATATGGCCTTTAGGCCCAATCTAATTCATATGGCCCATCAGACCCAATTC
Found at i:80745889 original size:27 final size:27
Alignment explanation
Indices: 80745851--80745968 Score: 128
Period size: 27 Copynumber: 4.4 Consensus size: 27
80745841 GAATAAGTTG
*
80745851 TAGAATTACCGAAATACCCCTGTATGA
1 TAGAATTACCGAAATACCCCTGTAGGA
* *
80745878 TAGAATTACCGAAATACCCTTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGA
* *
80745905 TAGAAATACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGA
* * * * * *
80745932 TAAAATTACTGAGATACCCTTGTGGGG
1 TAGAATTACCGAAATACCCCTGTAGGA
*
80745959 TAAAATTACC
1 TAGAATTACC
80745969 ATTTTGCCCC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCCTGTAGGA
Found at i:80745925 original size:54 final size:54
Alignment explanation
Indices: 80745850--80745964 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
80745840 TGAATAAGTT
* * *
80745850 GTAGAATTACCGAAATACCCCTGTATGATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAAATACCGAAATACCCCTGTAGGATAAAATTACCGAAATACCCTTGTAGG
* * * *
80745904 GTAGAAATACCGAAATACCCCTGTAGGGTAAAATTACTGAGATACCCTTGTGGG
1 GTAGAAATACCGAAATACCCCTGTAGGATAAAATTACCGAAATACCCTTGTAGG
80745958 GTA-AAAT
1 GTAGAAAT
80745965 TACCATTTTG
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 4 0.07
54 50 0.93
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (54 bp):
GTAGAAATACCGAAATACCCCTGTAGGATAAAATTACCGAAATACCCTTGTAGG
Found at i:80746662 original size:27 final size:26
Alignment explanation
Indices: 80746618--80746668 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
80746608 CTCGCTACAA
*
80746618 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
80746645 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
80746669 AGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:80749840 original size:35 final size:35
Alignment explanation
Indices: 80749801--80749936 Score: 175
Period size: 35 Copynumber: 3.9 Consensus size: 35
80749791 ACACCCCAGG
* * *
80749801 TGCTCCTAAAATCCAATCCATCCGAAACACACCAA
1 TGCTCATAAAAGCTAATCCATCCGAAACACACCAA
* * *
80749836 TGCTC-TAAGAGCTAATCCCTCTGAAACACACCAA
1 TGCTCATAAAAGCTAATCCATCCGAAACACACCAA
* *
80749870 TGCTCATAAGAGCTAATCCCTCCGAAACACACCAA
1 TGCTCATAAAAGCTAATCCATCCGAAACACACCAA
* *
80749905 TGCTCATAAAAGCTAATCCAACCAAAACACAC
1 TGCTCATAAAAGCTAATCCATCCGAAACACAC
80749937 AAAAACAGAG
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
34 29 0.32
35 61 0.68
ACGTcount: A:0.40, C:0.34, G:0.09, T:0.18
Consensus pattern (35 bp):
TGCTCATAAAAGCTAATCCATCCGAAACACACCAA
Found at i:80749862 original size:34 final size:35
Alignment explanation
Indices: 80749815--80749923 Score: 184
Period size: 35 Copynumber: 3.1 Consensus size: 35
80749805 CCTAAAATCC
*
80749815 AATCCATCCGAAACACACCAATGCTC-TAAGAGCT
1 AATCCCTCCGAAACACACCAATGCTCATAAGAGCT
*
80749849 AATCCCTCTGAAACACACCAATGCTCATAAGAGCT
1 AATCCCTCCGAAACACACCAATGCTCATAAGAGCT
*
80749884 AATCCCTCCGAAACACACCAATGCTCATAAAAGCT
1 AATCCCTCCGAAACACACCAATGCTCATAAGAGCT
80749919 AATCC
1 AATCC
80749924 AACCAAAACA
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
34 24 0.34
35 46 0.66
ACGTcount: A:0.39, C:0.33, G:0.10, T:0.18
Consensus pattern (35 bp):
AATCCCTCCGAAACACACCAATGCTCATAAGAGCT
Found at i:80751890 original size:10 final size:10
Alignment explanation
Indices: 80751877--80751915 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
80751867 ATATGTGAAT
80751877 ATATCATGGC
1 ATATCATGGC
80751887 ATATCATGTGC
1 ATATCATG-GC
80751898 ATATCATGGC
1 ATATCATGGC
80751908 ATATCATG
1 ATATCATG
80751916 TACAAAAGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:80751903 original size:21 final size:21
Alignment explanation
Indices: 80751877--80751916 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
80751867 ATATGTGAAT
80751877 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
80751898 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
80751917 ACAAAAGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:80761622 original size:80 final size:80
Alignment explanation
Indices: 80761538--80761686 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
80761528 TATGGTAACC
* * * *
80761538 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
80761602 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
80761618 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
80761683 CCGG
66 CCGG
80761687 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:80761628 original size:40 final size:38
Alignment explanation
Indices: 80761579--80761686 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
80761569 ATCACGATTT
*
80761579 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
80761619 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
80761659 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
80761687 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:80769721 original size:80 final size:80
Alignment explanation
Indices: 80769637--80769785 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
80769627 TATGGTAACC
* * * *
80769637 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
80769701 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
80769717 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
80769782 CCGG
66 CCGG
80769786 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:80769727 original size:40 final size:38
Alignment explanation
Indices: 80769678--80769785 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
80769668 ATCACGATTT
*
80769678 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
80769718 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
80769758 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
80769786 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:80780987 original size:42 final size:42
Alignment explanation
Indices: 80780894--80781006 Score: 115
Period size: 42 Copynumber: 2.7 Consensus size: 42
80780884 CAATATTGAT
* *
80780894 GCCTCTGTCCCAAACAGGGTCTTACACGAAATTAGATACGAT
1 GCCTGTGTCCCAAACAGGGTCTTACACGAAATTAGATACGAG
* *
80780936 GCC-GATGTCCCAAACATGGTCTTATACGAAATCTCA-AT-CGAG
1 GCCTG-TGTCCCAAACAGGGTCTTACACGAAAT-T-AGATACGAG
* * *
80780978 GCCTGTGTCCCAGACACGATCTTACACGA
1 GCCTGTGTCCCAAACAGGGTCTTACACGA
80781007 TGTCTCAAAC
Statistics
Matches: 59, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
42 54 0.92
43 4 0.07
44 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (42 bp):
GCCTGTGTCCCAAACAGGGTCTTACACGAAATTAGATACGAG
Found at i:80784598 original size:40 final size:40
Alignment explanation
Indices: 80784539--80784731 Score: 190
Period size: 40 Copynumber: 4.8 Consensus size: 40
80784529 CAATTGAATG
* * * *
80784539 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * **
80784579 GTATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
80784619 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
80784659 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* *
80784699 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
80784732 TGTGGTTATA
Statistics
Matches: 126, Mismatches: 25, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:80784677 original size:80 final size:80
Alignment explanation
Indices: 80784581--80784731 Score: 216
Period size: 80 Copynumber: 1.9 Consensus size: 80
80784571 TAGTAATTGT
* *
80784581 ATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGT-GACCACATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTCGACC-CATCCGGGCTAAGACCCGAAGGCA
80784644 TTCGTGCAAGTTGTTAA
64 TTCGTGCAAGTTGTTAA
* ** *
80784661 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATT
80784726 CGTGCA
66 CGTGCA
80784732 TGTGGTTATA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
79 2 0.03
80 59 0.94
81 2 0.03
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTGTTAA
Found at i:80787917 original size:29 final size:29
Alignment explanation
Indices: 80787870--80787970 Score: 114
Period size: 29 Copynumber: 3.4 Consensus size: 29
80787860 ACCGGTATAT
*
80787870 AGTACCTGATAAATATAACACTAGCACAA
1 AGTACCTGATAAATGTAACACTAGCACAA
* * *
80787899 AGTGCCTGATAATTGTAACACTAGTACAA
1 AGTACCTGATAAATGTAACACTAGCACAA
* *
80787928 AGTACCTGATAACTGTAATCACCAGCA-AA
1 AGTACCTGATAAATGTAA-CACTAGCACAA
*
80787957 TAGTATCTGATAAA
1 -AGTACCTGATAAA
80787971 CCCTAATGAC
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
29 43 0.72
30 17 0.28
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.25
Consensus pattern (29 bp):
AGTACCTGATAAATGTAACACTAGCACAA
Found at i:80795731 original size:21 final size:21
Alignment explanation
Indices: 80795679--80795724 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
80795669 GATAAATAAC
*
80795679 ATTAAATTACTTAAAATGACT
1 ATTAAATTACTTAAAATGACA
80795700 ATTAAATTACTTAAAATGACA
1 ATTAAATTACTTAAAATGACA
80795721 ATTA
1 ATTA
80795725 TGTTACTACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.37
Consensus pattern (21 bp):
ATTAAATTACTTAAAATGACA
Found at i:80797623 original size:25 final size:25
Alignment explanation
Indices: 80797591--80797643 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
80797581 TAAGTTCAGC
*
80797591 TTCAGAAAGTACTAACTACAGTGTT
1 TTCAGAAAGTACTAACTACAATGTT
* *
80797616 TTCAGAAATTTCTAACTACAATGTT
1 TTCAGAAAGTACTAACTACAATGTT
80797641 TTC
1 TTC
80797644 TAAATTCAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (25 bp):
TTCAGAAAGTACTAACTACAATGTT
Found at i:80798965 original size:30 final size:30
Alignment explanation
Indices: 80798899--80798989 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
80798889 CCACATACCA
* * * *
80798899 GTGTGGCTTGCCTGTGTGGGCCCATACGCCC
1 GTGTGGCATGCCCGTG-GAGCCCACACGCCC
* *
80798930 ATGTGGCATGCCCGTGGAGCCCACATGCCC
1 GTGTGGCATGCCCGTGGAGCCCACACGCCC
* *
80798960 GTGTGGCATGCCCGTAGCGCCCACACGCCC
1 GTGTGGCATGCCCGTGGAGCCCACACGCCC
80798990 AATTCAGCCT
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
30 37 0.74
31 13 0.26
ACGTcount: A:0.12, C:0.37, G:0.32, T:0.19
Consensus pattern (30 bp):
GTGTGGCATGCCCGTGGAGCCCACACGCCC
Found at i:80800911 original size:2 final size:2
Alignment explanation
Indices: 80800906--80800947 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
80800896 TTTCACACAC
80800906 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80800947 A
1 A
80800948 AAGTTCATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80805037 original size:27 final size:27
Alignment explanation
Indices: 80804989--80805105 Score: 137
Period size: 27 Copynumber: 4.3 Consensus size: 27
80804979 TAAAATGTGA
*
80804989 CACAAAGGTGTTCC-TTTACATAGATTGC
1 CACAAAGG-CTTCCATTT-CATAGATTGC
*
80805017 CACAAAGGCTTCCATTTCATAGATTGT
1 CACAAAGGCTTCCATTTCATAGATTGC
* * * *
80805044 CACAAAGACTTCCATGTCAAAGGTTGC
1 CACAAAGGCTTCCATTTCATAGATTGC
* *
80805071 CACAAAGGCTTCAATTTCATAGATTGT
1 CACAAAGGCTTCCATTTCATAGATTGC
80805098 CACAAAGG
1 CACAAAGG
80805106 TTTTCACCAA
Statistics
Matches: 75, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
27 64 0.85
28 11 0.15
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (27 bp):
CACAAAGGCTTCCATTTCATAGATTGC
Found at i:80808740 original size:41 final size:41
Alignment explanation
Indices: 80808683--80808842 Score: 302
Period size: 41 Copynumber: 3.9 Consensus size: 41
80808673 ATTACATTTG
80808683 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
1 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
* *
80808724 GCACTTAGTGTGCGAGATTATAATAGCTTTGGCTACGTAAT
1 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
80808765 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
1 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
80808806 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATG
1 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATG
80808843 CTTTGGCACT
Statistics
Matches: 115, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 115 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (41 bp):
GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
Found at i:80810824 original size:27 final size:27
Alignment explanation
Indices: 80810780--80810852 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
80810770 TGAAACTGCT
* * *
80810780 TTTCTT-AGTGTTCGCCATACGTACTA
1 TTTCTTCAGAGTTCACCATACGTAATA
*
80810806 TTTCTTCAGAGTTCACCATATGTAATA
1 TTTCTTCAGAGTTCACCATACGTAATA
* *
80810833 TTCCTTCAAAGTTCACCATA
1 TTTCTTCAGAGTTCACCATA
80810853 TTTATCATTC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
26 6 0.15
27 34 0.85
ACGTcount: A:0.26, C:0.23, G:0.11, T:0.40
Consensus pattern (27 bp):
TTTCTTCAGAGTTCACCATACGTAATA
Found at i:80811035 original size:27 final size:27
Alignment explanation
Indices: 80810952--80811062 Score: 100
Period size: 27 Copynumber: 4.1 Consensus size: 27
80810942 TGTTCCTTTC
* * *
80810952 CATAGATTGCCATAAA-AGCTTTTATTT
1 CATAAATTGCCACAAAGA-CTTCTATTT
* * *
80810979 CA-AAGATTTCCCCAAAGACTTCTATGT
1 CATAA-ATTGCCACAAAGACTTCTATTT
* *
80811006 CATAAATTGCCACAAAGCCTTCCATTT
1 CATAAATTGCCACAAAGACTTCTATTT
* *
80811033 CATAGATTGCCACAAAGGCTTCTATTT
1 CATAAATTGCCACAAAGACTTCTATTT
80811060 CAT
1 CAT
80811063 CGGCGTGCTC
Statistics
Matches: 67, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
26 1 0.01
27 63 0.94
28 3 0.04
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.33
Consensus pattern (27 bp):
CATAAATTGCCACAAAGACTTCTATTT
Found at i:80813339 original size:66 final size:66
Alignment explanation
Indices: 80813254--80813404 Score: 178
Period size: 66 Copynumber: 2.3 Consensus size: 66
80813244 GTTCAGGAAC
* * * * * * *
80813254 TTGAGAAGACCAAATATCTCGTTTAGGGGCTTGGGAAGACTCAATATCTCATTTAAGATCTTGGG
1 TTGAGAAGACCAAATATCTCGTTTAGGAGCTTCGAAAGACTCAATATCGCATTCAAGAGCTTGAG
80813319 A
66 A
* * *
80813320 TTGAGAAGA-CATGATATCTCGTTTAGGAGCTTCGAAAGCCTCGATATCGCATTCAAGAGCTTGA
1 TTGAGAAGACCA-AATATCTCGTTTAGGAGCTTCGAAAGACTCAATATCGCATTCAAGAGCTTGA
80813384 GA
65 GA
* *
80813386 TTGAGAAGGCCTAATATCT
1 TTGAGAAGACCAAATATCT
80813405 TATTCAGGAT
Statistics
Matches: 70, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
65 2 0.03
66 67 0.96
67 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (66 bp):
TTGAGAAGACCAAATATCTCGTTTAGGAGCTTCGAAAGACTCAATATCGCATTCAAGAGCTTGAG
A
Found at i:80815989 original size:42 final size:42
Alignment explanation
Indices: 80815917--80816032 Score: 135
Period size: 42 Copynumber: 2.8 Consensus size: 42
80815907 TCGTATCAAT
* * * *
80815917 GCCATATCCCAGATATGGTCTTACATGAAAT-ATCATATCGAC
1 GCCATATCCCAGATATGGTCTTATACGAAATCA-CACACCGAC
* * * *
80815959 GCCATGTCCCTGACATGGTCTTATACGAAATCACACACCGAT
1 GCCATATCCCAGATATGGTCTTATACGAAATCACACACCGAC
*
80816001 GCCATATCCCAGATATGGTCTTATACGGAATC
1 GCCATATCCCAGATATGGTCTTATACGAAATC
80816033 TCAGTAGCTC
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 60 0.98
43 1 0.02
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (42 bp):
GCCATATCCCAGATATGGTCTTATACGAAATCACACACCGAC
Found at i:80819511 original size:6 final size:6
Alignment explanation
Indices: 80819477--80819510 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
80819467 AAAATAATAT
*
80819477 TACTCC TACTCC TACTCC TACTCC TACTAC TACT
1 TACTCC TACTCC TACTCC TACTCC TACTCC TACT
80819511 AACATCAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.21, C:0.44, G:0.00, T:0.35
Consensus pattern (6 bp):
TACTCC
Found at i:80829155 original size:57 final size:56
Alignment explanation
Indices: 80829068--80829186 Score: 179
Period size: 57 Copynumber: 2.1 Consensus size: 56
80829058 AATGGAGAAT
*
80829068 ATGAAACATTTGGAAATGATTATGATTTTCTCCAAAATG-AAAATG-AAAATGTATAA
1 ATGAAACATTTGGAAATGAATATGATTTTCTCCAAAATGAAAAATGAAAAATG-A-AA
*
80829124 ATGAAACAATTTGGAAATGAATGTGATTTTCTCCAAAATGAAAAATGAAAAATGAAA
1 ATGAAAC-ATTTGGAAATGAATATGATTTTCTCCAAAATGAAAAATGAAAAATGAAA
80829181 ATGAAA
1 ATGAAA
80829187 ATGACCTGAA
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
56 7 0.12
57 38 0.66
58 7 0.12
59 6 0.10
ACGTcount: A:0.50, C:0.07, G:0.15, T:0.29
Consensus pattern (56 bp):
ATGAAACATTTGGAAATGAATATGATTTTCTCCAAAATGAAAAATGAAAAATGAAA
Found at i:80829170 original size:7 final size:7
Alignment explanation
Indices: 80829158--80829187 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
80829148 GATTTTCTCC
80829158 AAAATGA
1 AAAATGA
80829165 AAAATGA
1 AAAATGA
80829172 AAAATG-
1 AAAATGA
80829178 AAAATGA
1 AAAATGA
80829185 AAA
1 AAA
80829188 TGACCTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (7 bp):
AAAATGA
Found at i:80829181 original size:13 final size:14
Alignment explanation
Indices: 80829158--80829187 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
80829148 GATTTTCTCC
80829158 AAAATGAAAAATGA
1 AAAATGAAAAATGA
80829172 AAAATG-AAAATGA
1 AAAATGAAAAATGA
80829185 AAA
1 AAA
80829188 TGACCTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (14 bp):
AAAATGAAAAATGA
Found at i:80830143 original size:16 final size:16
Alignment explanation
Indices: 80830122--80830152 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80830112 ACAAATGCAT
80830122 AAAAAGGACTAAATTG
1 AAAAAGGACTAAATTG
*
80830138 AAAAAGGAGTAAATT
1 AAAAAGGACTAAATT
80830153 AAGTGATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.03, G:0.19, T:0.19
Consensus pattern (16 bp):
AAAAAGGACTAAATTG
Found at i:80830927 original size:42 final size:42
Alignment explanation
Indices: 80830771--80830927 Score: 138
Period size: 42 Copynumber: 3.6 Consensus size: 42
80830761 AGTGATTTTG
* * **
80830771 TATAAGACCATGTCTGGGACATGGCATCGATATGAGGCCCCA
1 TATAAGACCATGTCTGGGACATGGCATCGATGTGTGGTTCCA
* * *
80830813 TATAAGACCATGTCTGGGACATGGCATCGACACCGAT-TCGAAACTT-CG
1 TATAAGACCATGTCTGGGACATGGCATCG--A-TG-TGT-G---GTTCCA
* *
80830861 TATAAGACCATATCTGGGATATGGCATCGATGTGTGGTTCCA
1 TATAAGACCATGTCTGGGACATGGCATCGATGTGTGGTTCCA
*
80830903 TGTAAGACCATGTCTGGGACATGGC
1 TATAAGACCATGTCTGGGACATGGC
80830928 TTTGGCACCC
Statistics
Matches: 90, Mismatches: 15, Indels: 20
0.72 0.12 0.16
Matches are distributed among these distances:
41 2 0.02
42 52 0.58
44 3 0.03
45 2 0.02
46 3 0.03
48 28 0.31
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (42 bp):
TATAAGACCATGTCTGGGACATGGCATCGATGTGTGGTTCCA
Found at i:80837859 original size:51 final size:51
Alignment explanation
Indices: 80837778--80837880 Score: 188
Period size: 51 Copynumber: 2.0 Consensus size: 51
80837768 TTGAAGCATG
* *
80837778 ATCTTTCCATTTCTAGCCATACTTTGAGCTAGGGTTCATGTTCAAAAACTT
1 ATCTATCCATTTCTAGCCATACTTTAAGCTAGGGTTCATGTTCAAAAACTT
80837829 ATCTATCCATTTCTAGCCATACTTTAAGCTAGGGTTCATGTTCAAAAACTT
1 ATCTATCCATTTCTAGCCATACTTTAAGCTAGGGTTCATGTTCAAAAACTT
80837880 A
1 A
80837881 ACCATGTGTG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (51 bp):
ATCTATCCATTTCTAGCCATACTTTAAGCTAGGGTTCATGTTCAAAAACTT
Found at i:80838003 original size:18 final size:18
Alignment explanation
Indices: 80837982--80838016 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
80837972 AAAAATGCAT
80837982 AAAAAGGACTAAATTAAA
1 AAAAAGGACTAAATTAAA
*
80838000 AAAAAGGAGTAAATTAA
1 AAAAAGGACTAAATTAA
80838017 GTGATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.14, T:0.17
Consensus pattern (18 bp):
AAAAAGGACTAAATTAAA
Found at i:80839131 original size:23 final size:23
Alignment explanation
Indices: 80839104--80839153 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
80839094 TATTTATTAT
80839104 TTACATACAACTTAGCTTTATGC
1 TTACATACAACTTAGCTTTATGC
80839127 TTACATACAACTTAGCTTTATGC
1 TTACATACAACTTAGCTTTATGC
80839150 TTAC
1 TTAC
80839154 CTCCTTTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (23 bp):
TTACATACAACTTAGCTTTATGC
Found at i:80839881 original size:22 final size:23
Alignment explanation
Indices: 80839792--80839917 Score: 96
Period size: 23 Copynumber: 5.3 Consensus size: 23
80839782 CAGTTCGTAT
* *
80839792 GAGCTTACCGATATATCAGTTCAAAA
1 GAGCTTACCG-T-T-TCAGCTCATAA
* * * *
80839818 GAGCTTACAGTTTTTAGCTTATTA
1 GAGCTTACCG-TTTCAGCTCATAA
80839842 GAGCTTACCGTTTCAGCTCATAA
1 GAGCTTACCGTTTCAGCTCATAA
* *
80839865 GAGCTTACTG-TTCAGCTTGATAA
1 GAGCTTACCGTTTCAGC-TCATAA
*
80839888 -AGCTTACCGTTTCAACTCA-ATA
1 GAGCTTACCGTTTCAGCTCATA-A
80839910 GAGCTTAC
1 GAGCTTAC
80839918 TGTTCATTAG
Statistics
Matches: 80, Mismatches: 16, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
21 1 0.01
22 17 0.21
23 36 0.45
24 15 0.19
25 1 0.01
26 10 0.12
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCATAA
Found at i:80843175 original size:46 final size:46
Alignment explanation
Indices: 80843125--80843300 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
80843115 TGGTTGAGCA
80843125 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80843171 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80843216 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80843264 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80843301 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80843281 original size:93 final size:93
Alignment explanation
Indices: 80843122--80843293 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80843112 GGATGGTTGA
* *
80843122 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80843187 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80843215 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80843280 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
80843294 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80850755 original size:46 final size:46
Alignment explanation
Indices: 80850705--80850880 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
80850695 TGGTTGAGCA
80850705 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80850751 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80850796 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80850844 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80850881 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80850861 original size:93 final size:93
Alignment explanation
Indices: 80850702--80850873 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80850692 GGATGGTTGA
* *
80850702 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80850767 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80850795 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80850860 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
80850874 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80854331 original size:26 final size:25
Alignment explanation
Indices: 80854295--80854430 Score: 209
Period size: 26 Copynumber: 5.2 Consensus size: 25
80854285 CATGATATTC
80854295 TTATCATGAAACATTTACCTAACTCA
1 TTATCATGAAACATTTACCTAAC-CA
80854321 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAA-CCA
*
80854347 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACC-A
*
80854373 TTATCATGAAGCATTTACCTAACACA
1 TTATCATGAAACATTTACCTAAC-CA
80854399 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACC-A
80854425 TTATCA
1 TTATCA
80854431 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 4, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.03
26 97 0.95
27 2 0.02
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.34
Consensus pattern (25 bp):
TTATCATGAAACATTTACCTAACCA
Found at i:80858454 original size:137 final size:137
Alignment explanation
Indices: 80858220--80858494 Score: 478
Period size: 137 Copynumber: 2.0 Consensus size: 137
80858210 GCCCATTCAA
80858220 GTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAACCCCTTATTC
1 GTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAACCCCTTATTC
*
80858285 AGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCC
66 AGATAACAATATGACCCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCC
80858350 CATTTGG
131 CATTTGG
* * *
80858357 GTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTATAATAAACTGGGCCTTAGCCCCTTATTC
1 GTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAACCCCTTATTC
* * * *
80858422 AGGTAACAGTATGACCCATAGGCCCATTTCAAAATACATGTAACATCAGTAAACATATGCAAGCC
66 AGATAACAATATGACCCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCC
80858487 CATTTGG
131 CATTTGG
80858494 G
1 G
80858495 GAGACTACTC
Statistics
Matches: 130, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
137 130 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (137 bp):
GTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAACCCCTTATTC
AGATAACAATATGACCCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCC
CATTTGG
Found at i:80858779 original size:25 final size:27
Alignment explanation
Indices: 80858742--80858794 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
80858732 TCAAACATGC
80858742 ATTTAGGTCAATTTA-A-CCCTAGGGGT
1 ATTTAGGTCAATTTATATCCC-AGGGGT
*
80858768 ATTTCGGT-AATTTATATCCCAGGGGT
1 ATTTAGGTCAATTTATATCCCAGGGGT
80858794 A
1 A
80858795 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 6 0.25
26 15 0.62
27 3 0.12
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (27 bp):
ATTTAGGTCAATTTATATCCCAGGGGT
Found at i:80862615 original size:46 final size:46
Alignment explanation
Indices: 80862565--80862740 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
80862555 TGGTTGAGCA
80862565 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80862611 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80862656 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80862704 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80862741 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80862721 original size:93 final size:93
Alignment explanation
Indices: 80862562--80862733 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80862552 GGATGGTTGA
* *
80862562 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80862627 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80862655 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80862720 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
80862734 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80864889 original size:15 final size:15
Alignment explanation
Indices: 80864871--80864900 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
80864861 GGGCTTAACG
80864871 AAGACATTAAGGTAT
1 AAGACATTAAGGTAT
80864886 AAGACATTAAGGTAT
1 AAGACATTAAGGTAT
80864901 TTGTTGGATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.27
Consensus pattern (15 bp):
AAGACATTAAGGTAT
Found at i:80870199 original size:46 final size:46
Alignment explanation
Indices: 80870149--80870324 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
80870139 TGGTTGAGCA
80870149 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80870195 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80870240 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80870288 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80870325 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80870305 original size:93 final size:93
Alignment explanation
Indices: 80870146--80870317 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80870136 GGATGGTTGA
* *
80870146 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80870211 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80870239 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80870304 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
80870318 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80882776 original size:47 final size:45
Alignment explanation
Indices: 80882660--80882779 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 45
80882650 CTCGTAGCCG
*
80882660 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCAATGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTC-TCTCAATGCCA
* *
80882706 ATGTATGTCCTAGACATGTCTTACACTGGCAT-T-TCAT-AATGTGGCCA
1 ATGCATGTCCCAGACATGTCTTACACTGGC-TCTCTC-TCAA--T-GCCA
80882753 ATGCATGTCCCAGACATGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
80882780 AGCACACACA
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
44 4 0.06
45 1 0.02
46 30 0.47
47 29 0.45
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTCTCTCTCAATGCCA
Found at i:80887031 original size:49 final size:48
Alignment explanation
Indices: 80886903--80887044 Score: 185
Period size: 49 Copynumber: 2.9 Consensus size: 48
80886893 TATTGTGAGG
* *
80886903 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCCTACCCGAAAACTGTGA
1 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CC--AGACTGTGA
* * * * *
80886954 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGC
1 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTG-TGA
80887003 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
80887045 TAGCTTCGGC
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
48 5 0.06
49 40 0.51
50 2 0.03
51 32 0.41
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (48 bp):
TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTGTGA
Found at i:80892872 original size:72 final size:72
Alignment explanation
Indices: 80892788--80892928 Score: 282
Period size: 72 Copynumber: 2.0 Consensus size: 72
80892778 GGTGTGACCC
80892788 TGTAGGTTATTATAATGTTAGTAGTAATACTAGAAAGATTCAAATATTACAAAAAATGAGTGGCA
1 TGTAGGTTATTATAATGTTAGTAGTAATACTAGAAAGATTCAAATATTACAAAAAATGAGTGGCA
80892853 TCTACCT
66 TCTACCT
80892860 TGTAGGTTATTATAATGTTAGTAGTAATACTAGAAAGATTCAAATATTACAAAAAATGAGTGGCA
1 TGTAGGTTATTATAATGTTAGTAGTAATACTAGAAAGATTCAAATATTACAAAAAATGAGTGGCA
80892925 TCTA
66 TCTA
80892929 GCAATGCATC
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.33
Consensus pattern (72 bp):
TGTAGGTTATTATAATGTTAGTAGTAATACTAGAAAGATTCAAATATTACAAAAAATGAGTGGCA
TCTACCT
Found at i:80904475 original size:48 final size:48
Alignment explanation
Indices: 80904378--80904503 Score: 135
Period size: 48 Copynumber: 2.6 Consensus size: 48
80904368 CATTAGGGGA
* * * *** *
80904378 TACATTGAGTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGTGAGT
1 TACATCGATTTGGCTTCGGGCCATGATATAAGCACTTCAGACATAAGT
* *
80904426 TATATCGATTTGGCTTCGGGCCATGATATAAGCATTTCAGACATAAGT
1 TACATCGATTTGGCTTCGGGCCATGATATAAGCACTTCAGACATAAGT
* * * *
80904474 TACCTTGATTTGGCTTCGGGGCATGGTATA
1 TACATCGATTTGGCTTCGGGCCATGATATA
80904504 GGTACTTAGT
Statistics
Matches: 64, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 64 1.00
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (48 bp):
TACATCGATTTGGCTTCGGGCCATGATATAAGCACTTCAGACATAAGT
Found at i:80911779 original size:40 final size:39
Alignment explanation
Indices: 80911590--80911779 Score: 152
Period size: 40 Copynumber: 4.8 Consensus size: 39
80911580 GGATATAACG
* ** * **
80911590 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
80911630 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
80911670 ACTTGAACAATGCCTTCGGG-C-TAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
80911707 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATATAGTA
* *
80911747 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
80911780 CATCATTCGA
Statistics
Matches: 120, Mismatches: 24, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
37 21 0.17
38 10 0.08
39 13 0.11
40 68 0.57
41 8 0.07
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:80919790 original size:40 final size:39
Alignment explanation
Indices: 80919601--80919790 Score: 161
Period size: 40 Copynumber: 4.8 Consensus size: 39
80919591 GGATATAACG
* ** * **
80919601 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
80919641 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
80919681 ACTTGCACAATGCCTTCGGG-CTTAG-CCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
80919718 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATATAGTA
* *
80919758 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
80919791 CATCATTCGA
Statistics
Matches: 122, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
37 19 0.16
38 13 0.11
39 16 0.13
40 66 0.54
41 8 0.07
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:80927719 original size:39 final size:39
Alignment explanation
Indices: 80927588--80927778 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
80927578 GGATATAACG
* ** **
80927588 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
80927628 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
80927668 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
80927706 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
80927746 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
80927779 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:80927723 original size:78 final size:80
Alignment explanation
Indices: 80927628--80927778 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
80927618 GGTTATAGCG
* * * *
80927628 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
80927690 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
80927706 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
80927771 AGCCCGGA
66 AGCCCGGA
80927779 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:80930430 original size:40 final size:40
Alignment explanation
Indices: 80930374--80930584 Score: 298
Period size: 40 Copynumber: 5.2 Consensus size: 40
80930364 AACATTGGAA
80930374 ATATAATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATAT-ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80930415 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80930455 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
80930495 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
80930534 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
80930575 CTATATCCGG
1 ATATATCCGG
80930585 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 2 0.01
40 145 0.96
41 4 0.03
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:80938568 original size:40 final size:40
Alignment explanation
Indices: 80938513--80938722 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
80938503 AACATTGGAA
80938513 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80938553 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80938593 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
80938633 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
80938672 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
80938713 CTATATCCGG
1 ATATATCCGG
80938723 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:80946595 original size:11 final size:11
Alignment explanation
Indices: 80946579--80946629 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
80946569 TACTAAATAA
80946579 AATAATAAAAT
1 AATAATAAAAT
80946590 AATAATAAATAT
1 AATAATAAA-AT
* *
80946602 ATTATTAAAAT
1 AATAATAAAAT
*
80946613 ATTAA-ATAAAT
1 AATAATA-AAAT
80946624 AATAAT
1 AATAAT
80946630 TATCTAATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
10 1 0.03
11 23 0.70
12 9 0.27
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
AATAATAAAAT
Found at i:80946631 original size:23 final size:23
Alignment explanation
Indices: 80946572--80946631 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
80946562 ATTTATATAC
80946572 TAAAT-AA-AATAA-TAAAATAA
1 TAAATAAATAATAATTAAAATAA
* *
80946592 T-AATAAATATATTATTAAAATAT
1 TAAATAAATA-ATAATTAAAATAA
80946615 TAAATAAATAATAATTA
1 TAAATAAATAATAATTA
80946632 TCTAATTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
19 3 0.09
20 3 0.09
21 1 0.03
22 3 0.09
23 14 0.44
24 8 0.25
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (23 bp):
TAAATAAATAATAATTAAAATAA
Found at i:80946654 original size:34 final size:31
Alignment explanation
Indices: 80946566--80946641 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
80946556 GCACATATTT
*
80946566 ATATACTAAATAAAATAATAAAAT-AATAATAA
1 ATATA-TAATTAAAAT-ATAAAATAAATAATAA
* *
80946598 ATATATTATTAAAATATTAAATAAATAATAA
1 ATATATAATTAAAATATAAAATAAATAATAA
* *
80946629 TTATCTAATTAAA
1 ATATATAATTAAA
80946642 TAACTATAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
30 6 0.16
31 26 0.70
32 5 0.14
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (31 bp):
ATATATAATTAAAATATAAAATAAATAATAA
Found at i:80947507 original size:14 final size:14
Alignment explanation
Indices: 80947488--80947516 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
80947478 TATTAAAGGG
80947488 GAGGTCCTTATGAT
1 GAGGTCCTTATGAT
80947502 GAGGTCCTTATGAT
1 GAGGTCCTTATGAT
80947516 G
1 G
80947517 CAATTAGACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.31, T:0.34
Consensus pattern (14 bp):
GAGGTCCTTATGAT
Found at i:80952461 original size:27 final size:27
Alignment explanation
Indices: 80952431--80952956 Score: 561
Period size: 27 Copynumber: 19.4 Consensus size: 27
80952421 TTACCAGATC
80952431 ACCAAAATACCCCTGGTTTGTAAAATT
1 ACCAAAATACCCCTGGTTTGTAAAATT
** **
80952458 ACCAAAATACCTTTGGTTTACAAAATT
1 ACCAAAATACCCCTGGTTTGTAAAATT
*
80952485 ACCAAAATACCCCTGATTTGTAAAATT
1 ACCAAAATACCCCTGGTTTGTAAAATT
*
80952512 ACCAAAATACCCTTGGTTTGTAAAATT
1 ACCAAAATACCCCTGGTTTGTAAAATT
* * *
80952539 ACTAAAATACCCTTGGTTTATAAAATT
1 ACCAAAATACCCCTGGTTTGTAAAATT
*
80952566 ACCAAAATACCCCTAGTTTGTAAAATT
1 ACCAAAATACCCCTGGTTTGTAAAATT
* *
80952593 ACCAAAATAGCCCTAGTTTGTAAAATT
1 ACCAAAATACCCCTGGTTTGTAAAATT
* ** * **
80952620 ACCAAAATTCCTTTAGTTTACAAAATT
1 ACCAAAATACCCCTGGTTTGTAAAATT
* **
80952647 AGCAAAATACCCCTCGACTTGTAAAATT
1 ACCAAAATACCCCT-GGTTTGTAAAATT
* *
80952675 ACCAAAATACCCTTAGTTTGTAAAATT
1 ACCAAAATACCCCTGGTTTGTAAAATT
* ** **
80952702 ACTAAAATACCATTGGTTCATAAAATT
1 ACCAAAATACCCCTGGTTTGTAAAATT
*
80952729 GCCAAAATACCCCTGGTTTGTAAAATT
1 ACCAAAATACCCCTGGTTTGTAAAATT
* *
80952756 ACTAAAATACCCTTGGTTTGTAAAATT
1 ACCAAAATACCCCTGGTTTGTAAAATT
* * *
80952783 ACTAAAATACCCTTGGTTTATAAAATT
1 ACCAAAATACCCCTGGTTTGTAAAATT
*
80952810 ACCAAAATACCTCTGGTTTGTAAAATT
1 ACCAAAATACCCCTGGTTTGTAAAATT
* **
80952837 ACCAAAACACCCCTAATTTGTAAAATT
1 ACCAAAATACCCCTGGTTTGTAAAATT
* *
80952864 ACCAAAATACCCCTGATTTGTGAAATT
1 ACCAAAATACCCCTGGTTTGTAAAATT
** ***
80952891 ACTGAAATA-CCCTCGACCTGTAAAATT
1 ACCAAAATACCCCT-GGTTTGTAAAATT
** **
80952918 ACTGAAATA-CCCTCGACTTGTAAAATT
1 ACCAAAATACCCCT-GGTTTGTAAAATT
*
80952945 ACCAAAGTACCC
1 ACCAAAATACCC
80952957 TCGATTTACA
Statistics
Matches: 423, Mismatches: 73, Indels: 5
0.84 0.15 0.01
Matches are distributed among these distances:
26 4 0.01
27 397 0.94
28 22 0.05
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
ACCAAAATACCCCTGGTTTGTAAAATT
Found at i:80952566 original size:81 final size:81
Alignment explanation
Indices: 80952431--80952983 Score: 653
Period size: 81 Copynumber: 6.8 Consensus size: 81
80952421 TTACCAGATC
* * *
80952431 ACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCTTTGGTTTACAAAATTACCAAAATACC
1 ACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACC
80952496 CCTGATTTGTAAAATT
66 CCTGATTTGTAAAATT
*
80952512 ACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACC
1 ACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACC
80952577 CCT-AGTTTGTAAAATT
66 CCTGA-TTTGTAAAATT
* * * * * *
80952593 ACCAAAATAGCCC-TAGTTTGTAAAATTACCAAAATTCCTTTAGTTTACAAAATTAGCAAAATAC
1 ACCAAAATA-CCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATAC
*
80952657 CCCTCGACTTGTAAAATT
65 CCCT-GATTTGTAAAATT
* * * * *
80952675 ACCAAAATACCCTTAGTTTGTAAAATTACTAAAATACCATTGGTTCATAAAATTGCCAAAATACC
1 ACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACC
*
80952740 CCTGGTTTGTAAAATT
66 CCTGATTTGTAAAATT
* *
80952756 ACTAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACC
1 ACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACC
* *
80952821 TCTGGTTTGTAAAATT
66 CCTGATTTGTAAAATT
* * ** * * * * **
80952837 ACCAAAACACCCCTAATTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATA-C
1 ACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACC
**
80952901 CCTCGACCTGTAAAATT
66 CCT-GATTTGTAAAATT
** * ** * * * * * *
80952918 ACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAAAATTACCGAAGTACC
1 ACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACC
80952983 C
66 C
80952984 TTATAGGGTA
Statistics
Matches: 406, Mismatches: 59, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
80 4 0.01
81 330 0.81
82 71 0.17
83 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (81 bp):
ACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACC
CCTGATTTGTAAAATT
Found at i:80952998 original size:27 final size:27
Alignment explanation
Indices: 80952968--80953095 Score: 157
Period size: 27 Copynumber: 4.7 Consensus size: 27
80952958 CGATTTACAA
* *
80952968 AATTACCGAAGTACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
80952995 AATTATCGAAATACCCCTGTAGGTTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
80953022 AATTTCTGAAATATCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
80953049 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
80953076 AATTACCGAGATACCCTTGT
1 AATTACCGAAATACCCTTGT
80953096 GGGATTAAAA
Statistics
Matches: 82, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:80953549 original size:22 final size:22
Alignment explanation
Indices: 80953497--80953561 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
80953487 GCCAATTATT
* *
80953497 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
80953519 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
80953541 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
80953562 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:80953750 original size:27 final size:27
Alignment explanation
Indices: 80953720--80953827 Score: 121
Period size: 27 Copynumber: 4.0 Consensus size: 27
80953710 ATTCTGTTAA
* *
80953720 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
80953747 GTGGCTATGCCACAAATATCT-ATTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
80953774 GAGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
80953801 GTGACTCTGTCACAATATCTG-TTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
80953827 G
1 G
80953828 CAGCCATGCT
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
26 12 0.18
27 50 0.74
28 6 0.09
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:80953785 original size:54 final size:53
Alignment explanation
Indices: 80953722--80953827 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 53
80953712 TCTGTTAAGT
* * * *
80953722 GGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATCTATTCTGGA
1 GGCTCTGCCACAATATCTGTATCTGGTGACTATGCCAC-AATATCTATTCTGGA
* * *
80953776 GGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATCTGTTCTGG
1 GGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATCTATTCTGG
80953828 CAGCCATGCT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 13 0.29
54 32 0.71
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (53 bp):
GGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATCTATTCTGGA
Found at i:80953954 original size:6 final size:6
Alignment explanation
Indices: 80953945--80954048 Score: 79
Period size: 6 Copynumber: 16.8 Consensus size: 6
80953935 TTGCATTCAC
* * *
80953945 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCT- ATCGCCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
80953995 ATTCTG ATTCTG ATTTTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
80954044 ATTCT
1 ATTCT
80954049 CATTTTTATT
Statistics
Matches: 78, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
5 5 0.06
6 62 0.79
7 7 0.09
8 4 0.05
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:80953976 original size:25 final size:25
Alignment explanation
Indices: 80953948--80954009 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
80953938 CATTCACATT
* * *
80953948 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTATCACCTAATA
* *
80953973 CTGATTCTGATTCTATCGCCTAATT
1 CTGATTCTGATTCTATCACCTAATA
80953998 CTGATTCTGATT
1 CTGATTCTGATT
80954010 TTGATTCTGA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTATCACCTAATA
Found at i:80953980 original size:31 final size:31
Alignment explanation
Indices: 80953945--80954048 Score: 106
Period size: 31 Copynumber: 3.4 Consensus size: 31
80953935 TTGCATTCAC
* *
80953945 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTAACCTGATTCTG
*
80953976 ATTCTGATTCT-A-TC-GCCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTG--TAA-CCTGATTCTG
* * *
80954007 ATTTTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTAACCTGATTCTG
80954038 ATTCTGATTCT
1 ATTCTGATTCT
80954049 CATTTTTATT
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
28 1 0.02
29 2 0.03
30 3 0.05
31 47 0.80
32 3 0.05
33 2 0.03
34 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTAACCTGATTCTG
Done.