Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 262 of 410
Found at i:80954043 original size:19 final size:19
Alignment explanation
Indices: 80953976--80954043 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 19
80953966 CCTGATACTG
* *
80953976 ATTCTGATTCTATCGCCTA
1 ATTCTGATTCTGTCACCTA
** *
80953995 ATTCTGATTCTG--ATTTTG
1 ATTCTGATTCTGTCA-CCTA
80954013 ATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGTCACCTA
80954032 ATTCTGATTCTG
1 ATTCTGATTCTG
80954044 ATTCTCATTT
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
18 13 0.34
19 24 0.63
20 1 0.03
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.47
Consensus pattern (19 bp):
ATTCTGATTCTGTCACCTA
Found at i:80954046 original size:37 final size:37
Alignment explanation
Indices: 80953974--80954046 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
80953964 TACCTGATAC
*
80953974 TGATTCTGATTCTATCGCCTAATTCTGATTCTGATTT
1 TGATTCTGATTCTATCACCTAATTCTGATTCTGATTT
*
80954011 TGATTCTGATTCTGTCACCTAATTCTGATTCTGATT
1 TGATTCTGATTCTATCACCTAATTCTGATTCTGATT
80954047 CTCATTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (37 bp):
TGATTCTGATTCTATCACCTAATTCTGATTCTGATTT
Found at i:80954060 original size:37 final size:37
Alignment explanation
Indices: 80953967--80954061 Score: 118
Period size: 37 Copynumber: 2.6 Consensus size: 37
80953957 ATTCTGTTAC
* * *
80953967 CTGATACTGATTCTGATTCTATCGCCTAATTCTGATT
1 CTGATTCTCATTCTGATTCTATCACCTAATTCTGATT
* * *
80954004 CTGATTTTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGATTCTCATTCTGATTCTATCACCTAATTCTGATT
* *
80954041 CTGATTCTCATTTTTATTCTA
1 CTGATTCTCATTCTGATTCTA
80954062 GTTTTGATAA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.48
Consensus pattern (37 bp):
CTGATTCTCATTCTGATTCTATCACCTAATTCTGATT
Found at i:80956095 original size:27 final size:27
Alignment explanation
Indices: 80956048--80956360 Score: 369
Period size: 27 Copynumber: 11.6 Consensus size: 27
80956038 TTAGTTTATC
* *
80956048 AAATCACC-AAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
80956074 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
80956101 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
80956128 AAAGTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
80956155 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
80956182 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * *
80956209 AAACTACTAAAATACCTTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
80956236 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * *
80956263 AAATTGCCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
* * ***
80956290 AAATTACTAAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
** *
80956317 AAATTACTGAAATACCCTTGACTTT-TA
1 AAATTACCAAAATACCCTTG-GTTTGTA
*
80956344 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
80956361 CCAATTTACA
Statistics
Matches: 246, Mismatches: 39, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
26 7 0.03
27 238 0.97
28 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:80956373 original size:27 final size:27
Alignment explanation
Indices: 80956343--80956404 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
80956333 CTTGACTTTT
80956343 AAAATTACCAAAGTACCCCCAATTTAC
1 AAAATTACCAAAGTACCCCCAATTTAC
* *** * *
80956370 AAAATTGCCATTTTACCCTCGATTTAC
1 AAAATTACCAAAGTACCCCCAATTTAC
80956397 AAAATTAC
1 AAAATTAC
80956405 AGAAATACCC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.40, C:0.26, G:0.05, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAGTACCCCCAATTTAC
Found at i:80956429 original size:27 final size:27
Alignment explanation
Indices: 80956399--80956540 Score: 169
Period size: 27 Copynumber: 5.3 Consensus size: 27
80956389 CGATTTACAA
* *
80956399 AATTACAGAAATACCCTTGGAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
80956426 AATTACTGAAATACTCC-TGTAGGTTAG
1 AATTACCGAAATAC-CCTTGTAGGGTAG
80956453 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
80956480 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
80956507 AATTACCGAGATACCATTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
80956534 AATTACC
1 AATTACC
80956541 ATTTTGCCCC
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 2 0.02
27 94 0.96
28 2 0.02
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:80956457 original size:54 final size:54
Alignment explanation
Indices: 80956399--80956539 Score: 194
Period size: 54 Copynumber: 2.6 Consensus size: 54
80956389 CGATTTACAA
* * *
80956399 AATTACAGAAATACCCTTGGAGGGTAGAATTACTGAAATACTCCTGTAGGTTAG
1 AATTACCGAAATACCCTTGGAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* *
80956453 AATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGGAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * *
80956507 AATTACCGAGATACCATTGTG-GGGTAAAATTAC
1 AATTACCGAAATACCCTTG-GAGGGTAGAATTAC
80956540 CATTTTGCCC
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
54 76 1.00
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.26
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGGAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
Found at i:80957209 original size:27 final size:26
Alignment explanation
Indices: 80957179--80957257 Score: 104
Period size: 27 Copynumber: 3.0 Consensus size: 26
80957169 TATTTTTGGT
*
80957179 GGCTATGCCACAAATATCTGTTCTGGA
1 GGCTCTGCCAC-AATATCTGTTCTGGA
*
80957206 GGCTCTGCCACAATATCTGTATCTGGT
1 GGCTCTGCCACAATATCTGT-TCTGGA
* *
80957233 GACTCTGTCACAATATCTGTTCTGG
1 GGCTCTGCCACAATATCTGTTCTGG
80957258 CAGCCATGCT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
26 14 0.30
27 33 0.70
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.33
Consensus pattern (26 bp):
GGCTCTGCCACAATATCTGTTCTGGA
Found at i:80957384 original size:6 final size:6
Alignment explanation
Indices: 80957375--80957472 Score: 67
Period size: 6 Copynumber: 15.8 Consensus size: 6
80957365 TTGCATTCAC
* * *
80957375 ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCT- ATCACCTG ATTTTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* * *
80957425 ATTCTA ATTTTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCT
80957473 CATTTTTATT
Statistics
Matches: 71, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
5 5 0.07
6 54 0.76
7 8 0.11
8 4 0.06
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:80957403 original size:25 final size:25
Alignment explanation
Indices: 80957375--80957429 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
80957365 TTGCATTCAC
* *
80957375 ATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTATCACCTGATACTG
**
80957400 ATTCTGATTCTATCACCTGATTTTG
1 ATTCTGATTCTATCACCTGATACTG
80957425 ATTCT
1 ATTCT
80957430 AATTTTGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTATCACCTGATACTG
Found at i:80957419 original size:19 final size:19
Alignment explanation
Indices: 80957397--80957466 Score: 81
Period size: 19 Copynumber: 3.7 Consensus size: 19
80957387 TTACCTGATA
80957397 CTGATTCTGATTCTATCAC
1 CTGATTCTGATTCTATCAC
* *
80957416 CTGATTTTGATTCTA--ATT
1 CTGATTCTGATTCTATCA-C
* *
80957434 TTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTATCAC
80957453 CTGATTCTGATTCT
1 CTGATTCTGATTCT
80957467 GATTCTCATT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
17 1 0.02
18 12 0.29
19 27 0.66
20 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.49
Consensus pattern (19 bp):
CTGATTCTGATTCTATCAC
Found at i:80957484 original size:37 final size:37
Alignment explanation
Indices: 80957400--80957485 Score: 109
Period size: 37 Copynumber: 2.3 Consensus size: 37
80957390 CCTGATACTG
* * *
80957400 ATTCTGATTCTATCACCTGATTTTGATTCTAATTTTG
1 ATTCTGATTCTATCACCTGATTCTGATTCTAATTCTC
* *
80957437 ATTCTGATTCTGTCACCTGATTCTGATTCTGATTCTC
1 ATTCTGATTCTATCACCTGATTCTGATTCTAATTCTC
* *
80957474 ATTTTTATTCTA
1 ATTCTGATTCTA
80957486 GTTCAGATAA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.20, C:0.19, G:0.10, T:0.51
Consensus pattern (37 bp):
ATTCTGATTCTATCACCTGATTCTGATTCTAATTCTC
Found at i:80959450 original size:27 final size:27
Alignment explanation
Indices: 80959403--80959822 Score: 443
Period size: 27 Copynumber: 15.6 Consensus size: 27
80959393 TTAGTTTACC
* *
80959403 AAATCACC-AAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
80959429 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
80959456 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
80959483 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * *
80959510 AAATTACTAAAATATCATTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
80959537 AAATTACCAAAATACCCCTT-GTTTATA
1 AAATTACCAAAATA-CCCTTGGTTTGTA
* *
80959564 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
80959591 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
80959618 AAATTACC-AAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * *
80959644 AAATTACTAAAATATCATTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
80959671 AAATTACCAAAATACCCCTT-GTTTGTA
1 AAATTACCAAAATA-CCCTTGGTTTGTA
* *
80959698 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* ** * *
80959725 AAATTACCAAAATACCCCTAATTTATG
1 AAATTACCAAAATACCCTTGGTTTGTA
** * * **
80959752 AAATTACTGAAATACCATCGGCCTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
** * **
80959779 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
80959806 AAACTACCAAAGTACCC
1 AAATTACCAAAATACCC
80959823 CCAATTTACA
Statistics
Matches: 337, Mismatches: 51, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
26 38 0.11
27 293 0.87
28 6 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:80959875 original size:27 final size:27
Alignment explanation
Indices: 80959778--80959877 Score: 69
Period size: 27 Copynumber: 3.7 Consensus size: 27
80959768 ATCGGCCTGT
* * * **
80959778 AAAATTACTGAAATACCCTCGACTTGT
1 AAAATTACCGAAGTACCCTCGATTTAC
* * * *
80959805 AAAACTACCAAAGTACCCCCAATTTAC
1 AAAATTACCGAAGTACCCTCGATTTAC
* *
80959832 AGAATTGCC-ATTA-TACCCTCGATTTAC
1 AAAATTACCGA--AGTACCCTCGATTTAC
80959859 AAAATTACCGAAGTACCCT
1 AAAATTACCGAAGTACCCT
80959878 TGTAAGGTAG
Statistics
Matches: 53, Mismatches: 16, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
26 2 0.04
27 49 0.92
28 2 0.04
ACGTcount: A:0.38, C:0.27, G:0.09, T:0.26
Consensus pattern (27 bp):
AAAATTACCGAAGTACCCTCGATTTAC
Found at i:80959934 original size:26 final size:25
Alignment explanation
Indices: 80959861--80959988 Score: 87
Period size: 26 Copynumber: 4.9 Consensus size: 25
80959851 CGATTTACAA
*
80959861 AATTACCGAAGTACCCTTGTAAGGTAG
1 AATTACCGAAATACCCTTGT--GGTAG
* * *
80959888 GATTACCGAAATGCCCCTGTGGTTAG
1 AATTACCGAAATACCCTTGTGG-TAG
*
80959914 AATTACCGAAATACCTTTGTGGGTAG
1 AATTACCGAAATACCCTTGT-GGTAG
* *** * *
80959940 AAATATTAAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCTTGT--GGTAG
80959967 AATTACC-AAGATACCCTTGTGG
1 AATTACCGAA-ATACCCTTGTGG
80959989 GGTAAAATTA
Statistics
Matches: 78, Mismatches: 19, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
25 4 0.05
26 38 0.49
27 36 0.46
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (25 bp):
AATTACCGAAATACCCTTGTGGTAG
Found at i:80959980 original size:27 final size:27
Alignment explanation
Indices: 80959950--80960001 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
80959940 AAATATTAAA
80959950 ATACCCCTGTAGGGTAAAATTACCAAG
1 ATACCCCTGTAGGGTAAAATTACCAAG
* *
80959977 ATACCCTTGTGGGGTAAAATTACCA
1 ATACCCCTGTAGGGTAAAATTACCA
80960002 TTTTGTCCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (27 bp):
ATACCCCTGTAGGGTAAAATTACCAAG
Found at i:80975502 original size:60 final size:59
Alignment explanation
Indices: 80975363--80975475 Score: 165
Period size: 60 Copynumber: 1.9 Consensus size: 59
80975353 CTATTCAGAA
*
80975363 ATCAGAGTCA-ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAG
1 ATCAGAGT-ATACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCCTTACAG
* *
80975423 TATCAGAGTATACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCC
1 -ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC
80975476 TATAACAAGT
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
60 32 0.67
61 16 0.33
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (59 bp):
ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCCTTACAG
Found at i:80975512 original size:60 final size:59
Alignment explanation
Indices: 80975363--80975514 Score: 159
Period size: 60 Copynumber: 2.5 Consensus size: 59
80975353 CTATTCAGAA
*
80975363 ATCAGAGTCA-ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAG
1 ATCAGAGT-ATACTGGGCCTT-GCCCATATCAATATCAATCTGGGCCATAGCCCCTTACAG
* * *
80975423 TATCAGAGTATACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAG-CCCTATAACA-
1 -ATCAGAGTATACTGGGCCTTGCCCATATCAATATCAATCTGGGCCATAGCCCCT-T-ACAG
* *
80975483 AGTC-GAGATATATTGGGCCTTGCCTATATCAA
1 A-TCAGAG-TATACTGGGCCTTGCCCATATCAA
80975515 CACAGTTGGC
Statistics
Matches: 78, Mismatches: 8, Indels: 11
0.80 0.08 0.11
Matches are distributed among these distances:
59 8 0.10
60 50 0.64
61 20 0.26
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (59 bp):
ATCAGAGTATACTGGGCCTTGCCCATATCAATATCAATCTGGGCCATAGCCCCTTACAG
Found at i:80975925 original size:44 final size:44
Alignment explanation
Indices: 80975862--80975950 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
80975852 CCTTGAAGGG
*
80975862 CGTAATCGTAAACTTACCCCTTTAGGGGTATTATGATAATTCTA
1 CGTAATCGTAAACTTACCCCTTTAGGGGTATTACGATAATTCTA
80975906 CGTAATCGTAAACTTACCCCTTTAGGGGTATTACGATAATTCTA
1 CGTAATCGTAAACTTACCCCTTTAGGGGTATTACGATAATTCTA
80975950 C
1 C
80975951 CTTACAGAGG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (44 bp):
CGTAATCGTAAACTTACCCCTTTAGGGGTATTACGATAATTCTA
Found at i:80979388 original size:22 final size:22
Alignment explanation
Indices: 80979360--80979428 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
80979350 GTGTATATAA
80979360 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
**
80979382 ATGTGATGAA-GTTTATAT-----
1 ATGTGAT-AAGGCCTA-ATGGCCG
80979400 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
80979422 ATGTGAT
1 ATGTGAT
80979429 GAATGTGAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 16
0.64 0.07 0.29
Matches are distributed among these distances:
17 4 0.11
18 10 0.29
22 17 0.49
23 4 0.11
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.30
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:80979453 original size:47 final size:47
Alignment explanation
Indices: 80979390--80979780 Score: 580
Period size: 47 Copynumber: 8.4 Consensus size: 47
80979380 CGATGTGATG
* * *
80979390 AAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
80979437 AAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
80979484 AAGTGTATATATGGGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
80979531 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA-GT--
1 AAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
80979577 ---T-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
80979620 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
80979667 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * *
80979714 AAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTCATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
80979761 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
80979781 TCCCAAAGGG
Statistics
Matches: 319, Mismatches: 16, Indels: 18
0.90 0.05 0.05
Matches are distributed among these distances:
40 37 0.12
41 2 0.01
43 1 0.00
46 1 0.00
47 242 0.76
48 2 0.01
49 34 0.11
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:80979522 original size:94 final size:94
Alignment explanation
Indices: 80979332--80979780 Score: 629
Period size: 94 Copynumber: 4.9 Consensus size: 94
80979322 TTAGGATTTT
*
80979332 AATGTGATGAATGTGAAAGTGTATATAAATGTGATAAGGCCTAATGGCCGATGTGATGAA-GT--
1 AATGTGATGAATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGA
*
80979394 ---T-TATATATGTGATAAGGCCTAATGGCC
64 AAGTGTATATATGTGATAAGGCCGAATGGCC
*
80979421 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
80979486 GTGTATATATGGGATAAGGCCGAATGGCC
66 GTGTATATATGTGATAAGGCCGAATGGCC
*
80979515 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA-GT--
1 AATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGA
*
80979577 ---T-TATATATGTGATAAGGCCTAATGGCC
64 AAGTGTATATATGTGATAAGGCCGAATGGCC
* *
80979604 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
80979669 GTGTATATATGTGATAAGGCCGAATGGCC
66 GTGTATATATGTGATAAGGCCGAATGGCC
* * * * * *
80979698 AATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTCATGGATGTGAAA
1 AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
80979763 GTGTATAAATGTGATAAG
66 GTGTATATATGTGATAAG
80979781 TCCCAAAGGG
Statistics
Matches: 325, Mismatches: 19, Indels: 27
0.88 0.05 0.07
Matches are distributed among these distances:
87 66 0.20
88 4 0.01
89 69 0.21
90 1 0.00
93 2 0.01
94 145 0.45
95 2 0.01
96 36 0.11
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
GTGTATATATGTGATAAGGCCGAATGGCC
Found at i:80979571 original size:22 final size:22
Alignment explanation
Indices: 80979543--80979611 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
80979533 GTGTATATAT
80979543 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
**
80979565 ATGTGATGAA-GTTTATAT-----
1 ATGTGAT-AAGGCCTA-ATGGCCG
80979583 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
80979605 ATGTGAT
1 ATGTGAT
80979612 GAATGTGAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 16
0.64 0.07 0.29
Matches are distributed among these distances:
17 4 0.11
18 10 0.29
22 17 0.49
23 4 0.11
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.30
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:80979640 original size:183 final size:183
Alignment explanation
Indices: 80979332--80979725 Score: 761
Period size: 183 Copynumber: 2.2 Consensus size: 183
80979322 TTAGGATTTT
*
80979332 AATGTGATGAATGTGAAAGTGTATATAAATGTGATAAGGCCTAATGGCCGATGTGATGAAGTTTA
1 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAGTTTA
*
80979397 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
66 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
80979462 ATGGCCAATGTGATGAATGTGAAAGTGTATATATGGGATAAGGCCGAATGGCC
131 ATGGCCAATGTGATGAATGTGAAAGTGTATATATGGGATAAGGCCGAATGGCC
80979515 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAGTTTA
1 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAGTTTA
80979580 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
66 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
*
80979645 ATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
131 ATGGCCAATGTGATGAATGTGAAAGTGTATATATGGGATAAGGCCGAATGGCC
80979698 AATGTGATGAATGTGAAAGTGTATATAT
1 AATGTGATGAATGTGAAAGTGTATATAT
80979726 GTGATAGGGC
Statistics
Matches: 208, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
183 208 1.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.30
Consensus pattern (183 bp):
AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAGTTTA
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAAAGTGTATATATGGGATAAGGCCGAATGGCC
Found at i:80979658 original size:22 final size:22
Alignment explanation
Indices: 80979630--80979705 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
80979620 AAGTGTATAT
80979630 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
80979652 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
80979676 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
80979699 ATGTGAT
1 ATGTGAT
80979706 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:80984054 original size:37 final size:34
Alignment explanation
Indices: 80984004--80984075 Score: 81
Period size: 37 Copynumber: 2.0 Consensus size: 34
80983994 AAGTGTGCCA
* *
80984004 TTTTTCTGACCATCTTTCCTCCTCCTCCTTTCTTTTC
1 TTTTTCTCACCATC-TACCTCCTCCT-C-TTCTTTTC
* *
80984041 TTTTTCTCTCCATCTACCTTCTCCTCTTCTTTTC
1 TTTTTCTCACCATCTACCTCCTCCTCTTCTTTTC
80984075 T
1 T
80984076 CCATAGCCGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
34 9 0.29
35 1 0.03
36 9 0.29
37 12 0.39
ACGTcount: A:0.06, C:0.38, G:0.01, T:0.56
Consensus pattern (34 bp):
TTTTTCTCACCATCTACCTCCTCCTCTTCTTTTC
Found at i:80991231 original size:40 final size:40
Alignment explanation
Indices: 80991027--80991231 Score: 236
Period size: 40 Copynumber: 5.1 Consensus size: 40
80991017 CGGAATTTAA
** *
80991027 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80991067 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACATAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80991107 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
80991147 CCGGATTTAGTGACTCGCACCAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
80991187 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGCACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
80991227 CCGGA
1 CCGGA
80991232 CATCATTTGA
Statistics
Matches: 144, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 4 0.03
40 131 0.91
41 9 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80996677 original size:15 final size:15
Alignment explanation
Indices: 80996654--80996691 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
80996644 AGGCCTTAAC
*
80996654 AAGGGCATAAATTGG
1 AAGGCCATAAATTGG
*
80996669 AAGGCCATAAATTTG
1 AAGGCCATAAATTGG
80996684 AAGGCCAT
1 AAGGCCAT
80996692 GTTGACTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.21
Consensus pattern (15 bp):
AAGGCCATAAATTGG
Found at i:81003655 original size:371 final size:370
Alignment explanation
Indices: 81003014--81003758 Score: 1222
Period size: 371 Copynumber: 2.0 Consensus size: 370
81003004 TCCCTTAGGG
*
81003014 ATTTTCATCCTCGAAAATCTTACCGTTGAACAGATTCAGATGTTGCTGTCTCATAGCATCTTCGA
1 ATTTTCATCCTCAAAAATCTTACCGTTGAACAGATTCAGATGTTGCTGTCTCATAGCATCTTCGA
81003079 GCTCTCACGTAGCCTCTTCAATACCGTGTCAATGCAACATCACTTTTACTAATAGAATTTTCTTA
66 GCTCTCACGTAGCCTCTTCAATACCGTGTCAATGCAACATCACTTTTACTAATAGAATTTTCTTA
* *
81003144 TTTTGCAGTTTTTAACCTCGTGTGCCAAGATACGAATCGGTTCTTCTTCATAAGTCATATCAAAC
131 TTTCGCAGTTTTTAACCTCGTGTACCAAGATACGAATCGGTTCTTCTTCATAAGTCATATCAAAC
* *
81003209 TGAATCTGGATTTCAGACGGAGTAATTACATGCGAGGGATCGCATCTGTACCGTTGAAGCATCGA
196 TGAATCTGGATTTCAGACGGAGTAATTACATACGAGGGATCGCATCTATACCGTTGAAGCATCGA
* *
81003274 TACGTGAAACACATCATGAACCTTTTCTAGCTCTGGTAGCAACAACAATCTATAAGCAACCGGCC
261 TACGTGAAACACATCATGAACCTTTTCTAGCTATGGTAGCAACAACAATCTATAACCAACCGGCC
*
81003339 CGATACGCTCGATAATCTCATACGGCCCAATGAACCTCAGACTTA
326 CGATACGCTCGATAATCTCATACAGCCCAATGAACCTCAGACTTA
* * * *
81003384 ATTTTCATCCTCAAAAATCTTACCGTTGAACAGATTCAGATGTTGTTGTCTTATTGCATCTTCGG
1 ATTTTCATCCTCAAAAATCTTACCGTTGAACAGATTCAGATGTTGCTGTCTCATAGCATCTTCGA
* * * *
81003449 GCTCTCATGTAGCCTCTTCAATATCGTGTCGATGCAACATCGCTTTTACTAAT-GAAATTTTCTT
66 GCTCTCACGTAGCCTCTTCAATACCGTGTCAATGCAACATCACTTTTACTAATAG-AATTTTCTT
* * * *
81003513 ATTTCGTACTTTTTTAACCTCGTGTACTAAGATACGAATCGGTTCTTCTTCATAAGTCATATCAG
130 ATTTCGCA-GTTTTTAACCTCGTGTACCAAGATACGAATCGGTTCTTCTTCATAAGTCATATCAA
* * *
81003578 ACTGAATCTGGATTTCGGACGGAGTAATTACATACGAGGGATCGGATCTATACTGTTGAAGCATC
194 ACTGAATCTGGATTTCAGACGGAGTAATTACATACGAGGGATCGCATCTATACCGTTGAAGCATC
*
81003643 GATACGTGAAACACATCATGAACCTTTTCTAGCTATGGTGGCAACAACAATCTATAACCAACCGG
259 GATACGTGAAACACATCATGAACCTTTTCTAGCTATGGTAGCAACAACAATCTATAACCAACCGG
* * *
81003708 CCTGATACGCTTGATAATCTCATACAGCTCAATGAACCTCAGACTTA
324 CCCGATACGCTCGATAATCTCATACAGCCCAATGAACCTCAGACTTA
81003755 ATTT
1 ATTT
81003759 GCCTTTTCTT
Statistics
Matches: 346, Mismatches: 27, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
369 1 0.00
370 124 0.36
371 221 0.64
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (370 bp):
ATTTTCATCCTCAAAAATCTTACCGTTGAACAGATTCAGATGTTGCTGTCTCATAGCATCTTCGA
GCTCTCACGTAGCCTCTTCAATACCGTGTCAATGCAACATCACTTTTACTAATAGAATTTTCTTA
TTTCGCAGTTTTTAACCTCGTGTACCAAGATACGAATCGGTTCTTCTTCATAAGTCATATCAAAC
TGAATCTGGATTTCAGACGGAGTAATTACATACGAGGGATCGCATCTATACCGTTGAAGCATCGA
TACGTGAAACACATCATGAACCTTTTCTAGCTATGGTAGCAACAACAATCTATAACCAACCGGCC
CGATACGCTCGATAATCTCATACAGCCCAATGAACCTCAGACTTA
Found at i:81010823 original size:41 final size:41
Alignment explanation
Indices: 81010778--81010895 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
81010768 TGAAAGATAA
81010778 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
81010819 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81010849 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81010890 ATGTAG
1 ATGTAG
81010896 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:81010834 original size:71 final size:71
Alignment explanation
Indices: 81010746--81010909 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81010736 GAGATGTATC
81010746 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81010811 AGGACA
66 AGGACA
81010817 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81010882 AGGACA
66 AGGACA
81010888 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81010910 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81015124 original size:40 final size:40
Alignment explanation
Indices: 81015041--81015208 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
81015031 AAATTGAATG
* * * ** *
81015041 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGACT
* * * *
81015081 ATATCTGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
* *
81015121 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGACT
* * *
81015161 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGACT
81015201 ATATCCGG
1 ATATCCGG
81015209 TTATATTCCG
Statistics
Matches: 104, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
39 4 0.04
40 98 0.94
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
Found at i:81017261 original size:29 final size:29
Alignment explanation
Indices: 81017233--81017334 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
81017223 CCTCCGAGCT
** * * *
81017233 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
81017262 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81017291 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81017320 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
81017335 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:81017279 original size:58 final size:58
Alignment explanation
Indices: 81017213--81017334 Score: 138
Period size: 58 Copynumber: 2.1 Consensus size: 58
81017203 CCCCACACAC
* * * * **
81017213 AGTGCCATA-CCCTCCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACTT
1 AGTGCCATATACCTCC-AGCACGCACACCCAGTGCCATATATTTCCAGCACGCACACTT
** **
81017271 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATACCTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACACTT
81017329 AGTGCC
1 AGTGCC
81017335 GATCTCGTCA
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
58 50 0.94
59 3 0.06
ACGTcount: A:0.23, C:0.34, G:0.16, T:0.26
Consensus pattern (58 bp):
AGTGCCATATACCTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACACTT
Found at i:81024120 original size:17 final size:16
Alignment explanation
Indices: 81024090--81024123 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
81024080 TTCAGTTCCA
81024090 TAATTTACTCACTATT
1 TAATTTACTCACTATT
*
81024106 TAATTCTACTTACTATT
1 TAATT-TACTCACTATT
81024123 T
1 T
81024124 TTAGTGATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.29, C:0.18, G:0.00, T:0.53
Consensus pattern (16 bp):
TAATTTACTCACTATT
Found at i:81024998 original size:29 final size:29
Alignment explanation
Indices: 81024970--81025071 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
81024960 CCTCCGAGCT
** * * *
81024970 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
81024999 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81025028 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81025057 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
81025072 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:81032003 original size:29 final size:29
Alignment explanation
Indices: 81031975--81032075 Score: 134
Period size: 29 Copynumber: 3.6 Consensus size: 29
81031965 CCTCCGAGCT
** * *
81031975 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCGTATATTTCCAGCA
* *
81032004 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCA
81032033 CGCACACTTAGTGCC--ATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCA
81032060 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
81032076 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
27 27 0.42
29 37 0.58
ACGTcount: A:0.23, C:0.34, G:0.17, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:81032059 original size:27 final size:28
Alignment explanation
Indices: 81031995--81032074 Score: 126
Period size: 27 Copynumber: 2.9 Consensus size: 28
81031985 GTGCCGTATT
**
81031995 TTTCCAGCTTGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCA-ATA
81032024 TTTCCAGCACGCACACTTAGTGCC-ATA
1 TTTCCAGCACGCACACTTAGTGCCAATA
81032051 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCACGCACACTTAGTGCC
81032075 GATCTCGTCA
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
27 27 0.55
29 22 0.45
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.29
Consensus pattern (28 bp):
TTTCCAGCACGCACACTTAGTGCCAATA
Found at i:81039727 original size:29 final size:29
Alignment explanation
Indices: 81039699--81039800 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
81039689 CCTCCGAGCT
** * * *
81039699 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
81039728 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81039757 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
81039786 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
81039801 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:81044227 original size:40 final size:40
Alignment explanation
Indices: 81044161--81044327 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
81044151 AAATTGAATG
* * *
81044161 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
81044200 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
81044240 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
81044280 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
81044320 ATATCCGG
1 ATATCCGG
81044328 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:81050754 original size:41 final size:41
Alignment explanation
Indices: 81050709--81050826 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
81050699 TGAAAGATAA
81050709 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
81050750 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81050780 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81050821 ATGTAG
1 ATGTAG
81050827 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:81050765 original size:71 final size:71
Alignment explanation
Indices: 81050677--81050840 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81050667 GAGATGTATC
81050677 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81050742 AGGACA
66 AGGACA
81050748 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81050813 AGGACA
66 AGGACA
81050819 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81050841 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81062597 original size:43 final size:42
Alignment explanation
Indices: 81062522--81062688 Score: 126
Period size: 43 Copynumber: 3.9 Consensus size: 42
81062512 CAAAAAGCTC
* *
81062522 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAA
1 ATACGATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAA
*
81062564 ATATCGATGCC-ACTGTCCCAGACAG-GGTTTTACATGAAATCAA
1 ATA-CGATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATCAA
** ** * * *
81062607 ATACGATGCTGATATCCCAAACATGGTATTACACAT-AAATCATA
1 ATACGATGCCAACGTCCCAGACGTGGTCTT--ACATGAAATCA-A
* * *
81062651 AGT-CGATGCCAGCATCCCAGACGTGGTCTTACACGAAA
1 A-TACGATGCCAACGTCCCAGACGTGGTCTTACATGAAA
81062689 ACACATATCG
Statistics
Matches: 98, Mismatches: 17, Indels: 19
0.73 0.13 0.14
Matches are distributed among these distances:
42 26 0.27
43 44 0.45
44 27 0.28
45 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (42 bp):
ATACGATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAA
Found at i:81071185 original size:29 final size:28
Alignment explanation
Indices: 81071153--81071255 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
81071143 GTGACGAGAT
* *
81071153 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
81071182 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
81071211 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
81071240 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81071256 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:81078985 original size:29 final size:28
Alignment explanation
Indices: 81078953--81079055 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
81078943 GTGACGAGAT
* *
81078953 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
81078982 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
81079011 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
81079040 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81079056 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:81088964 original size:29 final size:28
Alignment explanation
Indices: 81088932--81089034 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
81088922 GTGACGAGAT
* *
81088932 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
81088961 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
81088990 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
81089019 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81089035 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:81096764 original size:29 final size:28
Alignment explanation
Indices: 81096732--81096834 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
81096722 GTGACGAGAT
* *
81096732 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
81096761 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
81096790 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
81096819 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81096835 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:81100224 original size:40 final size:40
Alignment explanation
Indices: 81100179--81100308 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
81100169 CGGAATATAA
81100179 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
81100219 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
81100259 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
81100299 CCGGATATAA
1 CCGGATATAA
81100309 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:81100323 original size:40 final size:40
Alignment explanation
Indices: 81100195--81100346 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
81100185 ATAAGCATGT
* * *
81100195 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
81100235 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
81100275 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
81100315 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
81100347 CATTCAATTT
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:81100329 original size:80 final size:80
Alignment explanation
Indices: 81100195--81100346 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
81100185 ATAAGCATGT
* *
81100195 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
81100260 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
81100275 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
81100338 CCCGGATAT
64 CCCGGATAT
81100347 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:81103174 original size:43 final size:42
Alignment explanation
Indices: 81103068--81103175 Score: 112
Period size: 43 Copynumber: 2.5 Consensus size: 42
81103058 GACTTATAAT
* * *
81103068 TTACGTGTAAGACCACGTTTGGGATGTTGGCATCATATTTGA
1 TTACATGTAAGGCCACGTCTGGGATGTTGGCATCATATTTGA
* * *
81103110 TTTCATGT-AGGACTATGTCTGGGATAG-TGGCATCGATATTTGA
1 TTACATGTAAGG-CCACGTCTGGGAT-GTTGGCATC-ATATTTGA
*
81103153 TTACATGTAAGGCCACATCTGGG
1 TTACATGTAAGGCCACGTCTGGG
81103176 TCGTTCACAT
Statistics
Matches: 52, Mismatches: 10, Indels: 7
0.75 0.14 0.10
Matches are distributed among these distances:
41 2 0.04
42 23 0.44
43 24 0.46
44 3 0.06
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (42 bp):
TTACATGTAAGGCCACGTCTGGGATGTTGGCATCATATTTGA
Found at i:81103945 original size:10 final size:10
Alignment explanation
Indices: 81103905--81103947 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
81103895 TATTGAAACA
*
81103905 TATGCTTTGG
1 TATGATTTGG
81103915 TATGATTTTGG
1 TATGA-TTTGG
*
81103926 TTTAGATTTGG
1 TAT-GATTTGG
81103937 TATGATTTGG
1 TATGATTTGG
81103947 T
1 T
81103948 TGGTGAATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 12 0.43
11 14 0.50
12 2 0.07
ACGTcount: A:0.16, C:0.02, G:0.28, T:0.53
Consensus pattern (10 bp):
TATGATTTGG
Found at i:81111849 original size:68 final size:68
Alignment explanation
Indices: 81111740--81111871 Score: 264
Period size: 68 Copynumber: 1.9 Consensus size: 68
81111730 CATACTTACT
81111740 TCACATTACCAACCCTTATGTTCATACACAAAAGATCAACTTAGCCGAAGGCCGGTAGCTCGTTG
1 TCACATTACCAACCCTTATGTTCATACACAAAAGATCAACTTAGCCGAAGGCCGGTAGCTCGTTG
81111805 ATA
66 ATA
81111808 TCACATTACCAACCCTTATGTTCATACACAAAAGATCAACTTAGCCGAAGGCCGGTAGCTCGTT
1 TCACATTACCAACCCTTATGTTCATACACAAAAGATCAACTTAGCCGAAGGCCGGTAGCTCGTT
81111872 TATCAACTGA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 64 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (68 bp):
TCACATTACCAACCCTTATGTTCATACACAAAAGATCAACTTAGCCGAAGGCCGGTAGCTCGTTG
ATA
Found at i:81112084 original size:40 final size:41
Alignment explanation
Indices: 81112040--81112265 Score: 261
Period size: 40 Copynumber: 5.7 Consensus size: 41
81112030 GCTACTCGTT
* * *
81112040 CAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATT-TAGTAACTCGCA
* *
81112080 CAAATGCCTTCGGGA-CTTATCCCGGATTTAGTAACTTGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
81112120 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
81112160 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * *
81112200 CAATTGCCTTC-GGATCTTAGTCCAGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAAC-TCGCA
*
81112241 CAGA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTCGGGATCTTAGCCCGGA
81112266 CATCATTCGA
Statistics
Matches: 165, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.02
40 151 0.92
41 11 0.07
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.28
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:81112234 original size:120 final size:120
Alignment explanation
Indices: 81112033--81112265 Score: 289
Period size: 120 Copynumber: 1.9 Consensus size: 120
81112023 GGATATAGCT
* *
81112033 ACTCGTTCAAATACCTTCGGGACATAGCCCGGTTATAGTAGCTCGCACAAATGCCTTCGGGACTT
1 ACTCGTACAAATACCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
* *
81112098 ATCCCGGATTTAGTAACTT-GCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTA
66 ATCCCAGATTTAGTAACTTAGCACAAA-GCCTTCGGGA-CTTAGCCCGGATTTAGTA
* * * *
81112153 ACTCGTACAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACAATTGCCTTC-GGAT
1 ACTCGTACAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-
*
81112215 CTTAGT-CCAGATTTAGTAACTTAGCACAGAGCCTTCGGGACTTAGCCCGGA
63 CTTA-TCCCAGATTTAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
81112266 CATCATTCGA
Statistics
Matches: 98, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
119 6 0.06
120 80 0.82
121 12 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (120 bp):
ACTCGTACAAATACCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
ATCCCAGATTTAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:81114121 original size:43 final size:41
Alignment explanation
Indices: 81113965--81114122 Score: 122
Period size: 43 Copynumber: 3.7 Consensus size: 41
81113955 ATGTGTTTTT
* * * *
81113965 GTGTAAGACCACGTTTGAGATGTTGGCAGCGACT-TATGATTTAC
1 GTGTAAGACCACGTCTG-GACGTTGGCATC-A-TATTTGA-TTAC
* **
81114009 GTGTAAGACCACGTCTGGTACGTTGACATCATATTTGATTTT
1 GTGTAAGACCACGTCTGG-ACGTTGGCATCATATTTGATTAC
** *
81114051 GTGTAAGACC-CTGTCTGGGACAATGGCATCGATATTTGGTTAC
1 GTGTAAGACCAC-GTCT-GGACGTTGGCATC-ATATTTGATTAC
*
81114094 ATGTAAGACCACGTCTAGGACGTTGGCAT
1 GTGTAAGACCACGTCT-GGACGTTGGCAT
81114123 TGTACGAGCT
Statistics
Matches: 91, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.01
42 25 0.27
43 40 0.44
44 25 0.27
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (41 bp):
GTGTAAGACCACGTCTGGACGTTGGCATCATATTTGATTAC
Found at i:81114290 original size:18 final size:18
Alignment explanation
Indices: 81114267--81114301 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
81114257 AAAGGTAAGA
81114267 ATATG-TATAAGTGATGAT
1 ATATGTTATAAGT-ATGAT
81114285 ATATGTTATAAGTATGA
1 ATATGTTATAAGTATGA
81114302 GAAAATATGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (18 bp):
ATATGTTATAAGTATGAT
Found at i:81114883 original size:10 final size:10
Alignment explanation
Indices: 81114843--81114885 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
81114833 TATTGAAACA
*
81114843 TATGCTTTGG
1 TATGATTTGG
81114853 TATGATTTTGG
1 TATGA-TTTGG
*
81114864 TTTAGATTTGG
1 TAT-GATTTGG
81114875 TATGATTTGG
1 TATGATTTGG
81114885 T
1 T
81114886 TGGTGAATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 12 0.43
11 14 0.50
12 2 0.07
ACGTcount: A:0.16, C:0.02, G:0.28, T:0.53
Consensus pattern (10 bp):
TATGATTTGG
Found at i:81117507 original size:33 final size:33
Alignment explanation
Indices: 81117479--81117543 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
81117469 CCACACAGTC
81117479 TAAATTGGCCTTGGCCGTGTGGATCACACGGCT
1 TAAATTGGCCTTGGCCGTGTGGATCACACGGCT
* * *
81117512 TGAATTGGCCTTGTCCGTGTGGATCATACGGC
1 TAAATTGGCCTTGGCCGTGTGGATCACACGGC
81117544 ATGGCCCAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.17, C:0.23, G:0.31, T:0.29
Consensus pattern (33 bp):
TAAATTGGCCTTGGCCGTGTGGATCACACGGCT
Found at i:81120663 original size:51 final size:51
Alignment explanation
Indices: 81120608--81120708 Score: 166
Period size: 51 Copynumber: 2.0 Consensus size: 51
81120598 ATGACTGTAG
*
81120608 ATCGGAAAAATGCCGAAAAGCCGGTAATATGGCATATTGTGCCACACAAGA
1 ATCGGAAAAATGCCGAAAAGCCGGGAATATGGCATATTGTGCCACACAAGA
* * *
81120659 ATCGGCAAAATGCCGAAAAGCGGGGAATATGGCGTATTGTGCCACACAAG
1 ATCGGAAAAATGCCGAAAAGCCGGGAATATGGCATATTGTGCCACACAAG
81120709 CGTGCGATCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.37, C:0.20, G:0.27, T:0.17
Consensus pattern (51 bp):
ATCGGAAAAATGCCGAAAAGCCGGGAATATGGCATATTGTGCCACACAAGA
Found at i:81121213 original size:18 final size:18
Alignment explanation
Indices: 81121173--81121207 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
81121163 GATGGGTCGA
81121173 AATGGGCTGTGTGGGCCC
1 AATGGGCTGTGTGGGCCC
81121191 AATGGGCTCGTG-GGGCC
1 AATGGGCT-GTGTGGGCC
81121208 ACATGGATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.11, C:0.23, G:0.46, T:0.20
Consensus pattern (18 bp):
AATGGGCTGTGTGGGCCC
Found at i:81121453 original size:27 final size:27
Alignment explanation
Indices: 81121420--81121645 Score: 169
Period size: 27 Copynumber: 8.4 Consensus size: 27
81121410 TAAGACCCTA
*
81121420 ATTTGTAAAATTACCGAAATACCCTCG
1 ATTTGTAAAATTACTGAAATACCCTCG
*
81121447 AATTGTAAAATTA-TCGAAATACCC-CTG
1 ATTTGTAAAATTACT-GAAATACCCTC-G
* * * *
81121474 ATTTTTGAAATTACTAAAATACCC-CC
1 ATTTGTAAAATTACTGAAATACCCTCG
* * *
81121500 AGGTTGTAAAATTATTGAAATACCCTTG
1 A-TTTGTAAAATTACTGAAATACCCTCG
* *
81121528 ATTTGTGAAATTACTGAAATACCCTTG
1 ATTTGTAAAATTACTGAAATACCCTCG
** * *
81121555 GGTGGTAAAATTA-TCGAAATAGTCCT-G
1 ATTTGTAAAATTACT-GAAATA-CCCTCG
* * *
81121582 ATTTAT-GAATTATTGAAATACCC-CTG
1 ATTTGTAAAATTACTGAAATACCCTC-G
* *
81121608 ATTTGTAAAATTACTAAAATACCCCCG
1 ATTTGTAAAATTACTGAAATACCCTCG
81121635 ATTTGTAAAAT
1 ATTTGTAAAAT
81121646 AATCATAATA
Statistics
Matches: 155, Mismatches: 32, Indels: 24
0.73 0.15 0.11
Matches are distributed among these distances:
25 2 0.01
26 20 0.13
27 127 0.82
28 6 0.04
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (27 bp):
ATTTGTAAAATTACTGAAATACCCTCG
Found at i:81121509 original size:54 final size:54
Alignment explanation
Indices: 81121427--81121605 Score: 200
Period size: 54 Copynumber: 3.3 Consensus size: 54
81121417 CTAATTTGTA
* * * *
81121427 AAATTACCGAAATACCCTC-GAATTGTAAAATTATCGAAATACCCCTGATTTTTG
1 AAATTACTGAAATACCCCCAG-GTTGTAAAATTATCGAAATACCCCTGATTTATG
* * * *
81121481 AAATTACTAAAATACCCCCAGGTTGTAAAATTATTGAAATACCCTTGATTTGTG
1 AAATTACTGAAATACCCCCAGGTTGTAAAATTATCGAAATACCCCTGATTTATG
*** * **
81121535 AAATTACTGAAATACCCTTGGGTGGTAAAATTATCGAAATAGTCCTGATTTATG
1 AAATTACTGAAATACCCCCAGGTTGTAAAATTATCGAAATACCCCTGATTTATG
*
81121589 -AATTATTGAAATACCCC
1 AAATTACTGAAATACCCC
81121606 TGATTTGTAA
Statistics
Matches: 105, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
53 15 0.14
54 89 0.85
55 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.32
Consensus pattern (54 bp):
AAATTACTGAAATACCCCCAGGTTGTAAAATTATCGAAATACCCCTGATTTATG
Found at i:81121566 original size:81 final size:80
Alignment explanation
Indices: 81121422--81121658 Score: 201
Period size: 80 Copynumber: 3.0 Consensus size: 80
81121412 AGACCCTAAT
** * * * ** *
81121422 TTGTAAAATTACCGAAATACCCTCGAATTGTAAAATTA-TCGAAATACCCCTGATTTTTGAAATT
1 TTGTAAAATTATTGAAATACCCTTGATTTGTAAAATTACT-GAAATACCCCTGAGTGGTAAAATT
*
81121486 A-CTAAAATACCCCCAGG
65 ATC-AAAATA-CCCCAGA
* * *
81121503 TTGTAAAATTATTGAAATACCCTTGATTTGTGAAATTACTGAAATACCCTTGGGTGGTAAAATTA
1 TTGTAAAATTATTGAAATACCCTTGATTTGTAAAATTACTGAAATACCCCTGAGTGGTAAAATTA
* ** *
81121568 TCGAAATAGTCCTGA
66 TCAAAATACCCCAGA
* * * * * * *
81121583 TT-TATGAATTATTGAAATACCCCTGATTTGTAAAATTACTAAAATACCCCCGATTTGTAAAATA
1 TTGTA-AAATTATTGAAATACCCTTGATTTGTAAAATTACTGAAATACCCCTGAGTGGTAAAATT
*
81121647 ATCATAATACCC
65 ATCAAAATACCC
81121659 ATGTAGGGTA
Statistics
Matches: 123, Mismatches: 30, Indels: 7
0.77 0.19 0.04
Matches are distributed among these distances:
79 2 0.02
80 62 0.50
81 57 0.46
82 2 0.02
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (80 bp):
TTGTAAAATTATTGAAATACCCTTGATTTGTAAAATTACTGAAATACCCCTGAGTGGTAAAATTA
TCAAAATACCCCAGA
Found at i:81121628 original size:53 final size:53
Alignment explanation
Indices: 81121427--81121631 Score: 193
Period size: 54 Copynumber: 3.8 Consensus size: 53
81121417 CTAATTTGTA
* * * *
81121427 AAATTACCGAAATA-CCCTCGAATTGTAAAATTATCGAAATACCCCTGATTTTTG
1 AAATTACTGAAATACCCCT-GAGTTGTAAAATTAT-GAAATACCCTTGATTTATG
* * *
81121481 AAATTACTAAAATACCCC-CAGGTTGTAAAATTATTGAAATACCCTTGATTTGTG
1 AAATTACTGAAATACCCCTGA-GTTGTAAAATTA-TGAAATACCCTTGATTTATG
* * * *
81121535 AAATTACTGAAATACCCTTGGGTGGTAAAATTATCGAAATAGTCC-TGATTTATG
1 AAATTACTGAAATACCCCTGAGTTGTAAAATTAT-GAAATA-CCCTTGATTTATG
* * *
81121589 -AATTATTGAAATACCCCTGATTTGTAAAATTACTAAAATACCC
1 AAATTACTGAAATACCCCTGAGTTGTAAAATTA-TGAAATACCC
81121632 CCGATTTGTA
Statistics
Matches: 124, Mismatches: 20, Indels: 16
0.77 0.12 0.10
Matches are distributed among these distances:
52 2 0.02
53 34 0.27
54 82 0.66
55 6 0.05
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.33
Consensus pattern (53 bp):
AAATTACTGAAATACCCCTGAGTTGTAAAATTATGAAATACCCTTGATTTATG
Found at i:81121669 original size:27 final size:27
Alignment explanation
Indices: 81121651--81121810 Score: 221
Period size: 27 Copynumber: 5.9 Consensus size: 27
81121641 AAAATAATCA
* *
81121651 TAATACCCATGTAGGGTAAAATGACTG
1 TAATACCCCTGTAGGGTAAAATGACCG
* * *
81121678 TAATGCTCCTGTAGGGTAAAATAACCG
1 TAATACCCCTGTAGGGTAAAATGACCG
*
81121705 TAATACCCTTGTAGGGTAAAATGACCG
1 TAATACCCCTGTAGGGTAAAATGACCG
*
81121732 TAATGCCCCTGTAGGGTAAAATGACCG
1 TAATACCCCTGTAGGGTAAAATGACCG
* *
81121759 TAATACCCCTATAGGGTAAAATGACTG
1 TAATACCCCTGTAGGGTAAAATGACCG
* *
81121786 TAATACCCCTATATGGTAAAATGAC
1 TAATACCCCTGTAGGGTAAAATGAC
81121811 GATTATGACC
Statistics
Matches: 118, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
TAATACCCCTGTAGGGTAAAATGACCG
Found at i:81122003 original size:27 final size:25
Alignment explanation
Indices: 81121946--81122020 Score: 62
Period size: 27 Copynumber: 2.9 Consensus size: 25
81121936 ATGAAGGAAG
* * *
81121946 TACTGTACTGGTGACTATGTCACAT
1 TACTGTACTGGTGGCTATGCCAAAT
81121971 TCACTGTTACTGGTGGCTATGCCATAAT
1 T-ACTG-TACTGGTGGCTATGCCA-AAT
**
81121999 TACTGATACCAGTGGCT-TGCCA
1 TACTG-TACTGGTGGCTATGCCA
81122021 CATTTACTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
25 1 0.02
26 9 0.22
27 28 0.68
28 3 0.07
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (25 bp):
TACTGTACTGGTGGCTATGCCAAAT
Found at i:81122226 original size:28 final size:27
Alignment explanation
Indices: 81122195--81122252 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 27
81122185 GTAATGATAT
* * *
81122195 TGTATTGGGCTTAGGCCCACACTATTAC
1 TGTATAGGGCTAAAGCCCACACTATT-C
*
81122223 TGTATAGGGCTAAAGCCCAGACTATTC
1 TGTATAGGGCTAAAGCCCACACTATTC
81122250 TGT
1 TGT
81122253 TACCATAGAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 4 0.15
28 22 0.85
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31
Consensus pattern (27 bp):
TGTATAGGGCTAAAGCCCACACTATTC
Found at i:81124242 original size:49 final size:49
Alignment explanation
Indices: 81124116--81124438 Score: 483
Period size: 49 Copynumber: 6.7 Consensus size: 49
81124106 CCCTTCGGGA
* * * * *
81124116 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81124163 CCTATCACATA--TATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81124210 CTTATCACATATGTATACCCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81124259 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81124308 CTTATCACATATGTATACGCTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81124357 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
81124406 CTTATCTCATATTTATACACATTCACATTCATC
1 CTTATCACATATGTATACACTTTCACATTCATC
81124439 GCGTAAAATC
Statistics
Matches: 257, Mismatches: 16, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 51 0.20
49 206 0.80
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (49 bp):
CTTATCACATATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81127908 original size:24 final size:24
Alignment explanation
Indices: 81127876--81127924 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
81127866 TGTTCCAACC
81127876 AATTGTCAAAATTACTACTATTTT
1 AATTGTCAAAATTACTACTATTTT
*
81127900 AATTGTCAAAATTATTACTATTTT
1 AATTGTCAAAATTACTACTATTTT
81127924 A
1 A
81127925 CAAATCCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (24 bp):
AATTGTCAAAATTACTACTATTTT
Found at i:81128891 original size:25 final size:27
Alignment explanation
Indices: 81128838--81128891 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
81128828 ATTCAACAAC
* *
81128838 TAGGGGTATTTTGGTCATTTTTTCCCT
1 TAGGGGTATTATGGTCATATTTTCCCT
81128865 TAGGGGTATTATGGT-A-ATTTTCCCT
1 TAGGGGTATTATGGTCATATTTTCCCT
81128890 TA
1 TA
81128892 ATTATGGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 10 0.40
26 1 0.04
27 14 0.56
ACGTcount: A:0.17, C:0.13, G:0.22, T:0.48
Consensus pattern (27 bp):
TAGGGGTATTATGGTCATATTTTCCCT
Found at i:81129235 original size:57 final size:58
Alignment explanation
Indices: 81129165--81129273 Score: 148
Period size: 58 Copynumber: 1.9 Consensus size: 58
81129155 AAATTCACAT
* * *
81129165 ACCTATATCTGGCCCATTAAGCCC-AATCATATTCATATGTCCCATTAGGCCAAAATC
1 ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCAAAATC
* * * *
81129222 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCC
1 ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCC
81129274 CAGTCACATT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 21 0.48
58 23 0.52
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (58 bp):
ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCAAAATC
Found at i:81129274 original size:29 final size:28
Alignment explanation
Indices: 81129174--81129288 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 28
81129164 TACCTATATC
* *
81129174 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* * *
81129202 TGTCCCATTAGGCCAAAATCACCTGT-ATA
1 TGGCCCATTAGGCC-CAATCACAT-TCATA
*
81129231 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
81129260 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
81129288 T
1 T
81129289 TCATGCTCAC
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
28 25 0.35
29 46 0.64
30 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:81131142 original size:13 final size:13
Alignment explanation
Indices: 81131124--81131151 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
81131114 AAGCGATTGG
81131124 ACCAATCTGTCTT
1 ACCAATCTGTCTT
81131137 ACCAATCTGTCTT
1 ACCAATCTGTCTT
81131150 AC
1 AC
81131152 AACCCGATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.32, G:0.07, T:0.36
Consensus pattern (13 bp):
ACCAATCTGTCTT
Found at i:81135993 original size:49 final size:50
Alignment explanation
Indices: 81135917--81136051 Score: 157
Period size: 49 Copynumber: 2.7 Consensus size: 50
81135907 AGCCAAAGCT
* * *
81135917 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACAAATGCAA-C-CAAC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACAAACGCAACCTCAAC
* * * *
81135965 AGTCTGGTACACGTAGTAGCCTGTACTTAGTACTACACACGTAACCTCACC
1 A-TCTGGTACACGTAGTAGCCTGCACTTAGTACTACAAACGCAACCTCAAC
** *
81136016 ATCTAATACACGTAGTAGCTTGCACTTAGTACTACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACA
81136052 CACGTGATCA
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
48 1 0.01
49 36 0.49
50 32 0.44
51 4 0.05
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (50 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACAAACGCAACCTCAAC
Found at i:81136043 original size:50 final size:49
Alignment explanation
Indices: 81135929--81136056 Score: 159
Period size: 50 Copynumber: 2.6 Consensus size: 49
81135919 CTGGTACGCA
* * * **
81135929 TAGTAGCCTGCACTTAGTACTACAAATGCAACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTAACCAACAGTCTAATACACG
* *
81135978 TAGTAGCCTGTACTTAGTACTACACACGTAACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTAA-C-CAACAGTCTAATACACG
*
81136028 TAGTAGCTTGCACTTAGTACTACACACGT
1 TAGTAGCCTGCACTTAGTACTACACACGT
81136057 GATCACAGTT
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
49 27 0.40
50 37 0.54
51 4 0.06
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTAACCAACAGTCTAATACACG
Found at i:81139983 original size:29 final size:29
Alignment explanation
Indices: 81139926--81140027 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
81139916 TACCTGTTTC
* * *
81139926 TGGCTCATTAAGCCC-AATCATAT-TCATA
1 TGGCCCATTAGGCCCAAATCACATGT-ATA
* *
81139954 TGACCCATTAGGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACATGTATA
* * *
81139983 TGGCCTATTAGGCCCAAATCATATTTATA
1 TGGCCCATTAGGCCCAAATCACATGTATA
*
81140012 TGGCCCGTTAGGCCCA
1 TGGCCCATTAGGCCCA
81140028 GCCATATTCA
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
28 12 0.20
29 47 0.78
30 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATGTATA
Found at i:81146620 original size:44 final size:45
Alignment explanation
Indices: 81146570--81146673 Score: 111
Period size: 53 Copynumber: 2.2 Consensus size: 45
81146560 CAATGTGATG
81146570 AATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCAATGTGA
1 AATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCC------A
**
81146621 TGAATGTGAACCTGTATATATATATGCGTGATAAGGTTGAATGGCC-
1 --AATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
81146667 AATGTGA
1 AATGTGA
81146674 TGAATGTGAA
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
44 7 0.14
53 42 0.86
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.30
Consensus pattern (45 bp):
AATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
Found at i:81146698 original size:25 final size:25
Alignment explanation
Indices: 81146669--81146793 Score: 81
Period size: 25 Copynumber: 5.2 Consensus size: 25
81146659 GAATGGCCAA
81146669 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
* * * *
81146694 TGTGAT-AAGGCCG-A-ATG-GCCA-A
1 TGTGATGAATG-TGAACATGCG-TATG
81146716 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
* * *
81146741 TGTGAT-AAGGCTG-A-ATG-GCCA-A
1 TGTGATGAATG-TGAACATGCG-TATG
81146763 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
81146788 TGTGAT
1 TGTGAT
81146794 AAGGCCGAAT
Statistics
Matches: 72, Mismatches: 14, Indels: 28
0.63 0.12 0.25
Matches are distributed among these distances:
22 17 0.24
23 16 0.22
24 16 0.22
25 23 0.32
ACGTcount: A:0.29, C:0.10, G:0.32, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCGTATG
Found at i:81146701 original size:47 final size:47
Alignment explanation
Indices: 81146541--81146905 Score: 451
Period size: 47 Copynumber: 7.5 Consensus size: 47
81146531 TATATATATA
***
81146541 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C-----ATGCGTATG
* ***
81146594 CGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C-----ATGCGTATG
* **
81146647 CGTGATAAGGTTGAATGGCCAATGTGATGAATGTGAACATGCGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATG
81146694 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATG
*
81146741 TGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACATGCGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATG
* *
81146788 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATG
* ** *
81146835 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATG
* *
81146882 TGTGGTAAGGCCGAATGGCTAATG
1 TGTGATAAGGCCGAATGGCCAATG
81146906 CGAAACGTGT
Statistics
Matches: 294, Mismatches: 18, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
47 206 0.70
52 1 0.00
53 87 0.30
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATG
Found at i:81146945 original size:46 final size:46
Alignment explanation
Indices: 81146879--81146969 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
81146869 GAACATGAAT
* * *
81146879 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * *
81146925 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
81146970 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.33, C:0.09, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:81146976 original size:141 final size:140
Alignment explanation
Indices: 81146536--81146954 Score: 405
Period size: 141 Copynumber: 2.9 Consensus size: 140
81146526 ACCCGTATAT
* *
81146536 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGCGTGATA
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG---A-ATATAT--GTGATA
* * *** * * ***
81146601 AGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGTTGAATGGC
60 AGGCCGAATGGCCAATGCGA-GAACGTGAA-C-----ATGCGTATGTGTGATAAAGCCAAATGGC
81146666 CAATGTGATGAATGTGAACATGC
118 CAATGTGATGAATGTGAACATGC
* * * ** * *
81146689 GTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTG
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCG
* * * *
81146754 AATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAA
66 AATGGCCAATGCGA-GAACGTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAA
81146819 TGTGAACATGC
130 TGTGAACATGC
*
81146830 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCG
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCG
* * *
81146895 AATGGCTAATGCGA-AACGTGTATGAGATG-GATATGTG-G-TAAAGCCAAATGGCTAATGTGA
66 AATGGCCAATGCGAGAACGTG-A--ACATGCG-TATGTGTGATAAAGCCAAATGGCCAATGTGA
81146955 GATATGTATG
Statistics
Matches: 234, Mismatches: 28, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
139 5 0.02
140 20 0.09
141 116 0.50
142 10 0.04
146 1 0.00
147 35 0.15
149 4 0.02
153 43 0.18
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (140 bp):
ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCG
AATGGCCAATGCGAGAACGTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAAT
GTGAACATGC
Found at i:81147171 original size:37 final size:37
Alignment explanation
Indices: 81147121--81147263 Score: 223
Period size: 37 Copynumber: 3.9 Consensus size: 37
81147111 AAATATATTT
81147121 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
81147158 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* * *
81147195 CGGGTAAGACCCGATGACTATGTATGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* * * *
81147232 CGGGTAAGATCCGATAACTTCATGTGGAGATT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATT
81147264 TCGTCTGAGC
Statistics
Matches: 97, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
Found at i:81150319 original size:31 final size:31
Alignment explanation
Indices: 81150277--81150362 Score: 129
Period size: 31 Copynumber: 2.8 Consensus size: 31
81150267 TCAATCTCAG
*
81150277 CATAT-ACTGGGCCGAAGCATTTACATTACT
1 CATATCACTGGGCCGAAGCCTTTACATTACT
* *
81150307 CATATCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTACT
*
81150338 CATATCATTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
81150363 TATAACAATA
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTACT
Found at i:81150595 original size:25 final size:25
Alignment explanation
Indices: 81150567--81150701 Score: 127
Period size: 25 Copynumber: 5.4 Consensus size: 25
81150557 CTGGAGGCCT
*
81150567 AGCCTCTTTTAAT-AACTAGGGCAAA
1 AGCC-CTTTTGATAAACTAGGGCAAA
81150592 AGCCCTTTTTGATAAACTAGGGCAAA
1 AGCCC-TTTTGATAAACTAGGGCAAA
*
81150618 AGCCCTTTTCGGTAAACTAGGGC-AA
1 AGCCCTTTT-GATAAACTAGGGCAAA
* *
81150643 AGCCCTTTTCGGTAAACTAAGGC-AA
1 AGCCCTTTT-GATAAACTAGGGCAAA
* * *
81150668 AGCCCTTTTTGGT-AACTGGGGC-AT
1 AGCCC-TTTTGATAAACTAGGGCAAA
81150692 AGCCCTTTTG
1 AGCCCTTTTG
81150702 CACTTCCTCC
Statistics
Matches: 100, Mismatches: 6, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
23 5 0.05
24 14 0.14
25 48 0.48
26 33 0.33
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTAGGGCAAA
Found at i:81150616 original size:26 final size:25
Alignment explanation
Indices: 81150580--81150700 Score: 163
Period size: 25 Copynumber: 4.8 Consensus size: 25
81150570 CTCTTTTAAT
* *
81150580 AACTAGGGCAAAAGCCCTTTTTGATA
1 AACTAGGGC-AAAGCCCTTTTCGGTA
81150606 AACTAGGGCAAAAGCCCTTTTCGGTA
1 AACTAGGGC-AAAGCCCTTTTCGGTA
81150632 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGGTA
* *
81150657 AACTAAGGCAAAGCCCTTTTTGGT-
1 AACTAGGGCAAAGCCCTTTTCGGTA
* *
81150681 AACTGGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
81150701 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 17 0.19
25 38 0.43
26 33 0.38
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGGTA
Found at i:81150659 original size:51 final size:49
Alignment explanation
Indices: 81150579--81150700 Score: 163
Period size: 51 Copynumber: 2.4 Consensus size: 49
81150569 CCTCTTTTAA
* *
81150579 TAACTAGGGCAAAAGCCCTTTTTGATAAACTAGGGCAAAAGCCCTTTTCGG
1 TAACTAGGGC-AAAGCCCTTTTCGATAAACTAAGGC-AAAGCCCTTTTCGG
* *
81150630 TAAACTAGGGCAAAGCCCTTTTCGGTAAACTAAGGCAAAGCCCTTTTTGG
1 T-AACTAGGGCAAAGCCCTTTTCGATAAACTAAGGCAAAGCCCTTTTCGG
* *
81150680 TAACTGGGGCATAGCCCTTTT
1 TAACTAGGGCAAAGCCCTTTT
81150701 GCACTTCCTC
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
49 18 0.28
50 14 0.22
51 23 0.36
52 9 0.14
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (49 bp):
TAACTAGGGCAAAGCCCTTTTCGATAAACTAAGGCAAAGCCCTTTTCGG
Found at i:81150776 original size:20 final size:21
Alignment explanation
Indices: 81150747--81150794 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
81150737 AAATGAATAC
* *
81150747 ATCATGTGCATATCATA-CAT
1 ATCATATGCATATCATATCAA
*
81150767 ATCATATGCATATCGTATCAA
1 ATCATATGCATATCATATCAA
81150788 ATCATAT
1 ATCATAT
81150795 ATATATCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (21 bp):
ATCATATGCATATCATATCAA
Found at i:81158087 original size:28 final size:28
Alignment explanation
Indices: 81158047--81158145 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 28
81158037 GTAATAAGCC
*
81158047 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
81158075 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* ** * * *
81158103 TGCACACTTAGTGCTATACCATTTGAACC
1 CGCACACTTAGTGCT-TAATAATCGAACT
81158132 CGCACACTTAGTGC
1 CGCACACTTAGTGC
81158146 CAATTTGTGA
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.62
29 18 0.31
30 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:81159900 original size:46 final size:46
Alignment explanation
Indices: 81159833--81160001 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
81159823 TGTAACCCGC
81159833 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* * *
81159879 CCATAAGTGAACTCAGACTCAACTCAACAAGCTC-GG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGC-A--T
* *** * *
81159925 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
81159972 -CATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
81160002 TTTGGATGCT
Statistics
Matches: 101, Mismatches: 15, Indels: 15
0.77 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 25 0.25
46 41 0.41
47 24 0.24
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:81162409 original size:15 final size:15
Alignment explanation
Indices: 81162385--81162440 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
81162375 ACAAGGAAAC
81162385 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
81162400 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
81162415 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
81162430 GAATAAAGAAA
1 GAATAAAGAAA
81162441 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:81165506 original size:46 final size:45
Alignment explanation
Indices: 81165363--81165506 Score: 120
Period size: 46 Copynumber: 3.1 Consensus size: 45
81165353 CCCGCCCATA
* *
81165363 AGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
* *
81165412 --CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
81165455 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
81165502 AGTGA
1 AGTGA
81165507 CATGTCACTT
Statistics
Matches: 79, Mismatches: 6, Indels: 23
0.73 0.06 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 6 0.08
44 1 0.01
46 34 0.43
47 28 0.35
48 5 0.06
49 1 0.01
50 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:81169480 original size:31 final size:31
Alignment explanation
Indices: 81169442--81169521 Score: 133
Period size: 31 Copynumber: 2.6 Consensus size: 31
81169432 TATCAGCCTG
81169442 CTGGGCCGAAGCCTTTACATTACTCATATCA
1 CTGGGCCGAAGCCTTTACATTACTCATATCA
* *
81169473 CTGGGCCGAAGCCTTTTCATTATTCATATCA
1 CTGGGCCGAAGCCTTTACATTACTCATATCA
*
81169504 CTGAGCCGAAGCCTTTAC
1 CTGGGCCGAAGCCTTTAC
81169522 TGTAACAATA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (31 bp):
CTGGGCCGAAGCCTTTACATTACTCATATCA
Found at i:81169779 original size:26 final size:25
Alignment explanation
Indices: 81169744--81169834 Score: 103
Period size: 26 Copynumber: 3.6 Consensus size: 25
81169734 TTAATAATTG
* *
81169744 GGGCAAAAGCCCTTTTTGATAAACTA
1 GGGC-AAAGCCCTTTTCGGTAAACTA
* *
81169770 GGGCAAAAGCCATTTTCGGTAAACTG
1 GGGC-AAAGCCCTTTTCGGTAAACTA
*
81169796 GGGCATAGCCCTTTTCGGT-AACTA
1 GGGCAAAGCCCTTTTCGGTAAACTA
*
81169820 GGGCATAGCCCTTTT
1 GGGCAAAGCCCTTTT
81169835 GCACTTCCTC
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
24 19 0.33
25 13 0.22
26 26 0.45
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.27
Consensus pattern (25 bp):
GGGCAAAGCCCTTTTCGGTAAACTA
Found at i:81169823 original size:24 final size:25
Alignment explanation
Indices: 81169751--81169834 Score: 107
Period size: 24 Copynumber: 3.4 Consensus size: 25
81169741 TTGGGGCAAA
* * *
81169751 AGCCCTTTTTGATAAACTAGGGCAAA
1 AGCCCTTTTCGGTAAACTAGGGC-AT
* *
81169777 AGCCATTTTCGGTAAACTGGGGCAT
1 AGCCCTTTTCGGTAAACTAGGGCAT
81169802 AGCCCTTTTCGGT-AACTAGGGCAT
1 AGCCCTTTTCGGTAAACTAGGGCAT
81169826 AGCCCTTTT
1 AGCCCTTTT
81169835 GCACTTCCTC
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
24 19 0.37
25 13 0.25
26 19 0.37
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (25 bp):
AGCCCTTTTCGGTAAACTAGGGCAT
Found at i:81169993 original size:25 final size:25
Alignment explanation
Indices: 81169965--81170012 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
81169955 ATAATTAAAC
* * *
81169965 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGAGGCAAAATAGTCATTTTTA
81169990 CCTAGAGGCAAAATAGTCATTTT
1 CCTAGAGGCAAAATAGTCATTTT
81170013 CGTATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (25 bp):
CCTAGAGGCAAAATAGTCATTTTTA
Found at i:81172363 original size:23 final size:23
Alignment explanation
Indices: 81172333--81172433 Score: 82
Period size: 23 Copynumber: 4.4 Consensus size: 23
81172323 ATGATGAACA
81172333 GTAAGCTCTAATGAGCTAAAACG
1 GTAAGCTCTAATGAGCTAAAACG
* ** *
81172356 GTAAGCTCT-ATCAAG-TTGAACA
1 GTAAGCTCTAAT-GAGCTAAAACG
* *
81172378 GTAAGCTCATAA-GAGTTGAAACG
1 GTAAGCTC-TAATGAGCTAAAACG
* * *
81172401 GTATGCTCCATTGAGCTAAAACG
1 GTAAGCTCTAATGAGCTAAAACG
81172424 GTAAGCTCTA
1 GTAAGCTCTA
81172434 TTAAGTTGAA
Statistics
Matches: 58, Mismatches: 15, Indels: 10
0.70 0.18 0.12
Matches are distributed among these distances:
22 17 0.29
23 40 0.69
24 1 0.02
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.25
Consensus pattern (23 bp):
GTAAGCTCTAATGAGCTAAAACG
Found at i:81172394 original size:22 final size:22
Alignment explanation
Indices: 81172327--81172397 Score: 65
Period size: 22 Copynumber: 3.2 Consensus size: 22
81172317 CCTAAGATGA
81172327 TGAACAGTAAGCTC-TAATGAGCT
1 TGAACAGTAAGCTCATAA-GAG-T
** * *
81172350 AAAACGGTAAGCTCTATCA-AGT
1 TGAACAGTAAGCTC-ATAAGAGT
81172372 TGAACAGTAAGCTCATAAGAGT
1 TGAACAGTAAGCTCATAAGAGT
81172394 TGAA
1 TGAA
81172398 ACGGTATGCT
Statistics
Matches: 37, Mismatches: 8, Indels: 7
0.71 0.15 0.13
Matches are distributed among these distances:
21 3 0.08
22 19 0.51
23 13 0.35
25 2 0.05
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.24
Consensus pattern (22 bp):
TGAACAGTAAGCTCATAAGAGT
Found at i:81174455 original size:2 final size:2
Alignment explanation
Indices: 81174444--81174474 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
81174434 ATTAAGTTAT
81174444 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81174475 AAGTAAAAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:81177359 original size:31 final size:31
Alignment explanation
Indices: 81177316--81177379 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
81177306 CCTTTTCATA
81177316 TTTCATAATTCATAACACTAGGCCGAAGCCT
1 TTTCATAATTCATAACACTAGGCCGAAGCCT
* ** *
81177347 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTAGGCCGAAGCCT
81177378 TT
1 TT
81177380 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTAGGCCGAAGCCT
Found at i:81177619 original size:24 final size:24
Alignment explanation
Indices: 81177586--81177691 Score: 153
Period size: 24 Copynumber: 4.4 Consensus size: 24
81177576 CAGGAGGCCG
81177586 AGCCTCTTTTAATAACTAGGGCA-A
1 AGCC-CTTTTAATAACTAGGGCATA
81177610 AGCCCTTTTTTAATAACTAGGGCATA
1 AGCCC--TTTTAATAACTAGGGCATA
*
81177636 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
*
81177659 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
81177683 AGCCCTTTT
1 AGCCCTTTT
81177692 GCACTTCCTC
Statistics
Matches: 77, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
23 23 0.30
24 31 0.40
25 17 0.22
26 6 0.08
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAACTAGGGCATA
Found at i:81177680 original size:47 final size:47
Alignment explanation
Indices: 81177593--81177690 Score: 153
Period size: 47 Copynumber: 2.1 Consensus size: 47
81177583 CCGAGCCTCT
81177593 TTTAATAACTAGGGCAAAGCCCTTTTTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTAGGGCAAAGCCC-TTTTTAATAACTAGGGCATAAGCCC
* *
81177641 TTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTAGGGCA-AAGCCCTTTTTAATAACTAGGGCATAAGCCC
81177688 TTT
1 TTT
81177691 TGCACTTCCT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
47 26 0.55
48 15 0.32
49 6 0.13
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (47 bp):
TTTAATAACTAGGGCAAAGCCCTTTTTAATAACTAGGGCATAAGCCC
Found at i:81177755 original size:11 final size:11
Alignment explanation
Indices: 81177740--81177795 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
81177730 TCATAAATAC
81177740 ATCATGTGCAT
1 ATCATGTGCAT
*
81177751 GTCAT-T-CAT
1 ATCATGTGCAT
81177760 ATCATGTGCAT
1 ATCATGTGCAT
*
81177771 ATCA--TACAT
1 ATCATGTGCAT
*
81177780 GTCATGTGCAT
1 ATCATGTGCAT
81177791 ATCAT
1 ATCAT
81177796 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 14 0.40
10 2 0.06
11 19 0.54
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:81177765 original size:20 final size:20
Alignment explanation
Indices: 81177740--81177806 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
81177730 TCATAAATAC
* *
81177740 ATCATGTGCATGTCATTCAT
1 ATCATGTGCATATCATACAT
81177760 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
81177780 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
81177800 ACCATGT
1 ATCATGT
81177807 TTATCGAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:81177871 original size:25 final size:25
Alignment explanation
Indices: 81177843--81177890 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
81177833 ATGTATAAAC
* * *
81177843 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
81177868 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
81177891 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:81179031 original size:18 final size:17
Alignment explanation
Indices: 81179004--81179037 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
81178994 TAGGGAAGAA
81179004 AATAAGAAGAGAAAACT
1 AATAAGAAGAGAAAACT
81179021 AATACAGAAGAGAAAAC
1 AATA-AGAAGAGAAAAC
81179038 GGCACAGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.65, C:0.09, G:0.18, T:0.09
Consensus pattern (17 bp):
AATAAGAAGAGAAAACT
Found at i:81180241 original size:18 final size:17
Alignment explanation
Indices: 81180214--81180247 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
81180204 TAGGGAAGAA
81180214 AATAAGAAGAGAAAACT
1 AATAAGAAGAGAAAACT
81180231 AATACAGAAGAGAAAAC
1 AATA-AGAAGAGAAAAC
81180248 GGCACAGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.65, C:0.09, G:0.18, T:0.09
Consensus pattern (17 bp):
AATAAGAAGAGAAAACT
Found at i:81180916 original size:46 final size:46
Alignment explanation
Indices: 81180864--81181142 Score: 353
Period size: 46 Copynumber: 6.0 Consensus size: 46
81180854 AGTGTGCTCT
81180864 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
81180910 CTGATATGAAATGTGTAAGACCGTAGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
81180956 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
81181002 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * ** *
81181048 GTGACATGAAAAGAATAAGACCACGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
81181094 ATGACA-GAAATTGAATGAGTAAGACCATAGTTGAAAGACACTATGGCAA
1 CTGATATGAAA-TG--T--GTAAGACCATGGTTGAAAGATACCATGGCAA
81181143 GATGTCAAAG
Statistics
Matches: 208, Mismatches: 20, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
45 4 0.02
46 178 0.86
50 26 0.12
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:81186389 original size:41 final size:40
Alignment explanation
Indices: 81186285--81186432 Score: 179
Period size: 41 Copynumber: 3.5 Consensus size: 40
81186275 CAACGATAAA
* * * *
81186285 TCAGCTATATGTGGCACTTAGTGTGCGGTTCGACATAGCT
1 TCAGCTATATATGGCACTTAGTGTGCAGATCGAGATAGCT
* *
81186325 TCGGCTAAATATATATGGCACTTAGTGTGCAAGATCGAGATAGAT
1 TCAGC----TATATATGGCACTTAGTGTGC-AGATCGAGATAGCT
81186370 TCAGCTATATATGGCACTTAGTGTGCGAGATCGAGATAGCT
1 TCAGCTATATATGGCACTTAGTGTGC-AGATCGAGATAGCT
*
81186411 TCGGCTATATATGGCACTTAGT
1 TCAGCTATATATGGCACTTAGT
81186433 ATATGATTTG
Statistics
Matches: 93, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
40 4 0.04
41 55 0.59
44 20 0.22
45 14 0.15
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (40 bp):
TCAGCTATATATGGCACTTAGTGTGCAGATCGAGATAGCT
Found at i:81186469 original size:81 final size:81
Alignment explanation
Indices: 81186285--81186475 Score: 192
Period size: 81 Copynumber: 2.3 Consensus size: 81
81186275 CAACGATAAA
** * *
81186285 TCAGCTATATGTGGCACTTAGTGTGCGGTTCGACATAGCTTCGGCTAAATATATATGGCACTTAG
1 TCAGCTATATACGACACTTAGTGTGCGGATCGACATAGCTTCGGC---ATATATATGGCACTTAG
*
81186350 TGTGCAAGATCGAGATAGAT
63 TAT-CAAGATCGAGATAGAT
* * *
81186370 TCAGCTATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTCGGC-TATATATGGCACTTAGTA
1 TCAGCTATATACGACACTTAGTGTGCG-GATCGACATAGCTTCGGCATATATATGGCACTTAGTA
* *
81186434 T-ATGATTTGAGATA-ACT
65 TCAAGA-TCGAGATAGA-T
81186451 TCAGCTA-AGTACGACACTTAGTGTG
1 TCAGCTATA-TACGACACTTAGTGTG
81186476 TGAAATATTT
Statistics
Matches: 94, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
80 5 0.05
81 29 0.31
82 18 0.19
85 26 0.28
86 16 0.17
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (81 bp):
TCAGCTATATACGACACTTAGTGTGCGGATCGACATAGCTTCGGCATATATATGGCACTTAGTAT
CAAGATCGAGATAGAT
Found at i:81198650 original size:40 final size:40
Alignment explanation
Indices: 81198591--81198798 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
81198581 CAATTGAATG
* * * *
81198591 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
81198631 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
81198671 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
81198711 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
81198751 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
81198791 ATATCCGG
1 ATATCCGG
81198799 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:81198729 original size:80 final size:80
Alignment explanation
Indices: 81198592--81198798 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
81198582 AATTGAATGA
* * ** * * *
81198592 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
81198657 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
81198670 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
81198735 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
81198752 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
81198799 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:81204181 original size:40 final size:40
Alignment explanation
Indices: 81204054--81204183 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
81204044 ATGCTGGAAA
* * * *
81204054 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
81204094 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
81204134 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
81204174 TTATATCCGG
1 TTATATCCGG
81204184 TTATGTTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:81212180 original size:40 final size:40
Alignment explanation
Indices: 81212121--81212328 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
81212111 CAATTGAATG
* * * *
81212121 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
81212161 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
81212201 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
81212241 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
81212281 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
81212321 ATATCCGG
1 ATATCCGG
81212329 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:81212259 original size:80 final size:80
Alignment explanation
Indices: 81212122--81212328 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
81212112 AATTGAATGA
* * ** * * *
81212122 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
81212187 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
81212200 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
81212265 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
81212282 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
81212329 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:81220327 original size:40 final size:40
Alignment explanation
Indices: 81220268--81220475 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
81220258 CAATTGAATG
* * * *
81220268 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * ** *
81220308 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
81220348 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
81220388 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
81220428 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
81220468 ATATCCGG
1 ATATCCGG
81220476 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:81220406 original size:80 final size:80
Alignment explanation
Indices: 81220269--81220475 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
81220259 AATTGAATGA
* * ** * * *
81220269 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
81220334 TTGTGCTAG-CG-AC
66 TTGTGCAAGTCGTAC
* * *
81220347 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
81220412 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
81220429 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
81220476 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 104 0.95
81 2 0.02
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:81222744 original size:32 final size:32
Alignment explanation
Indices: 81222708--81222771 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
81222698 ATGAAATGTA
*
81222708 TGCTAAAAGTATGTATAATTGTGTTGTAAGTT
1 TGCTAAAAGTATGTATAATTATGTTGTAAGTT
*
81222740 TGCTAAAAGTGTGTATAATTATGTTGTAAGTT
1 TGCTAAAAGTATGTATAATTATGTTGTAAGTT
81222772 CGGTAATGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.31, C:0.03, G:0.22, T:0.44
Consensus pattern (32 bp):
TGCTAAAAGTATGTATAATTATGTTGTAAGTT
Found at i:81226393 original size:20 final size:19
Alignment explanation
Indices: 81226354--81226396 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
81226344 CAACACAATG
*
81226354 AAAATAAAATAAAATAAAC
1 AAAATAAAATAAAAGAAAC
*
81226373 AAAATAAAAATAAAAGCAAC
1 AAAAT-AAAATAAAAGAAAC
81226393 AAAA
1 AAAA
81226397 CTTTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.79, C:0.07, G:0.02, T:0.12
Consensus pattern (19 bp):
AAAATAAAATAAAAGAAAC
Found at i:81226424 original size:26 final size:25
Alignment explanation
Indices: 81226378--81226426 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
81226368 TAAACAAAAT
* *
81226378 AAAAATAAAAGCAACAAAACTTTAA
1 AAAAATAAAAGAAAAAAAACTTTAA
*
81226403 AAAAATGAAAGAAAAAAGAACTTT
1 AAAAATAAAAGAAAAAA-AACTTT
81226427 TAAATCAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 14 0.70
26 6 0.30
ACGTcount: A:0.67, C:0.08, G:0.08, T:0.16
Consensus pattern (25 bp):
AAAAATAAAAGAAAAAAAACTTTAA
Done.