Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 263 of 410
Found at i:81231806 original size:40 final size:40
Alignment explanation
Indices: 81231761--81231927 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
81231751 CGGAATATAA
*
81231761 CCGGATATAAGCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * *
81231801 CCGGATAGAATG-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
81231841 CCGGATAT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAG-CACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
81231881 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
81231920 CCGGATAT
1 CCGGATAT
81231928 CATTCAATTT
Statistics
Matches: 107, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 14 0.13
40 89 0.83
41 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81231911 original size:80 final size:79
Alignment explanation
Indices: 81231777--81231927 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
81231767 ATAAGCATGT
*
81231777 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
81231842 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
81231857 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
81231920 CCGGATAT
64 CCGGATAT
81231928 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:81239825 original size:40 final size:40
Alignment explanation
Indices: 81239780--81239946 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
81239770 CGGAATATAA
81239780 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
81239820 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
81239860 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
81239900 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
81239939 CCGGATAT
1 CCGGATAT
81239947 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 92 0.87
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81239930 original size:80 final size:79
Alignment explanation
Indices: 81239780--81239946 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
81239770 CGGAATATAA
*
81239780 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
81239845 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
81239860 CCGGATATAGCCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
81239922 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
81239939 CCGGATAT
1 CCGGATAT
81239947 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:81241252 original size:14 final size:14
Alignment explanation
Indices: 81241224--81241266 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
81241214 AACTCATCCC
81241224 TCATTTTTTT-T-T
1 TCATTTTTTTATCT
81241236 TCATTTTTTTATCT
1 TCATTTTTTTATCT
*
81241250 TCATTTGTTTATTCT
1 TCATTTTTTTA-TCT
81241265 TC
1 TC
81241267 CTACATGACT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 10 0.37
13 1 0.04
14 11 0.41
15 5 0.19
ACGTcount: A:0.12, C:0.14, G:0.02, T:0.72
Consensus pattern (14 bp):
TCATTTTTTTATCT
Found at i:81246345 original size:40 final size:40
Alignment explanation
Indices: 81246286--81246427 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
81246276 AAATTGAATG
* * *
81246286 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
81246326 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
81246366 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
81246406 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
81246428 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:81246428 original size:40 final size:39
Alignment explanation
Indices: 81246325--81246453 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
81246315 TGCTGGAAAT
* * *
81246325 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
81246365 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
81246405 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
81246445 TATATCCGG
1 TATATCCGG
81246454 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:81253825 original size:134 final size:134
Alignment explanation
Indices: 81253585--81253852 Score: 518
Period size: 134 Copynumber: 2.0 Consensus size: 134
81253575 CTCTGATACC
*
81253585 AATAAAATTGTAACACCCCGTACCCTAGTCCGTTACCGGAATCGAACACAAGGTGCACACAGACT
1 AATAAAATTGTAACACCCCGTACCCGAGTCCGTTACCGGAATCGAACACAAGGTGCACACAGACT
81253650 TAACTATTTTCACAGTCCATTTAGAAATTTCCAGACAAGCTGGTTACTGCATCACTGTCACCTTA
66 TAACTATTTTCACAGTCCATTTAGAAATTTCCAGACAAGCTGGTTACTGCATCACTGTCACCTTA
81253715 AAAA
131 AAAA
81253719 AATAAAATTGTAACACCCCGTACCCGAGTCCGTTACCGGAATCGAACACAAGGTGCACACAGACT
1 AATAAAATTGTAACACCCCGTACCCGAGTCCGTTACCGGAATCGAACACAAGGTGCACACAGACT
*
81253784 TAACTATTTTCACAGTCCATTTAGAAATTTCCAGACAAGCTGGTTACTGCATCACTGTCGCCTTA
66 TAACTATTTTCACAGTCCATTTAGAAATTTCCAGACAAGCTGGTTACTGCATCACTGTCACCTTA
81253849 AAAA
131 AAAA
81253853 TCATATCTTG
Statistics
Matches: 132, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
134 132 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (134 bp):
AATAAAATTGTAACACCCCGTACCCGAGTCCGTTACCGGAATCGAACACAAGGTGCACACAGACT
TAACTATTTTCACAGTCCATTTAGAAATTTCCAGACAAGCTGGTTACTGCATCACTGTCACCTTA
AAAA
Found at i:81255174 original size:39 final size:40
Alignment explanation
Indices: 81255087--81255178 Score: 125
Period size: 38 Copynumber: 2.4 Consensus size: 40
81255077 ATAGCGACTA
* * *
81255087 GCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTT
1 GCACGAATGCCTTCAGGACTTAACCCGGATTTAGTAACTC
* *
81255127 GCAC-AATGCCTTCAGG-CTTAGCCCGGATTTATTAACTC
1 GCACGAATGCCTTCAGGACTTAACCCGGATTTAGTAACTC
81255165 GCACGAATGCCTTC
1 GCACGAATGCCTTC
81255179 GGATCCTAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
38 22 0.48
39 20 0.43
40 4 0.09
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (40 bp):
GCACGAATGCCTTCAGGACTTAACCCGGATTTAGTAACTC
Found at i:81258517 original size:16 final size:17
Alignment explanation
Indices: 81258496--81258535 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
81258486 AATCAAGATG
81258496 AACATAAACCATAA-TC-
1 AACATAAACCA-AATTCA
81258512 AACAT-AACCAAATTCA
1 AACATAAACCAAATTCA
81258528 AACATAAA
1 AACATAAA
81258536 AGTTAAGCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 2 0.10
15 7 0.33
16 10 0.48
17 2 0.10
ACGTcount: A:0.60, C:0.23, G:0.00, T:0.17
Consensus pattern (17 bp):
AACATAAACCAAATTCA
Found at i:81259370 original size:56 final size:56
Alignment explanation
Indices: 81259310--81259445 Score: 209
Period size: 56 Copynumber: 2.4 Consensus size: 56
81259300 CCCCAGACAG
*
81259310 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCAATGCCAACGTATTAAACGT
* * * * * *
81259366 GGTCTTACTCACATACATACATCAGAATCACATATCAATGCCAACGTATTGAACTT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCAATGCCAACGTATTAAACGT
81259422 GGTCTTACTCGCACACATATATCG
1 GGTCTTACTCGCACACATATATCG
81259446 ATGCCATGGT
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 69 1.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAATCACATATCAATGCCAACGTATTAAACGT
Found at i:81261870 original size:28 final size:27
Alignment explanation
Indices: 81261831--81261887 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 27
81261821 GAATTTGAGT
*
81261831 AATTAGGGCTAAATTGTAAAAT-AATG
1 AATTAGGGCTAAAATGTAAAATAAATG
*
81261857 AATTGAGGGACTAAAATGTGAAATAAATG
1 AATT-AGGG-CTAAAATGTAAAATAAATG
81261886 AA
1 AA
81261888 ATATAACGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 4 0.15
28 12 0.46
29 6 0.23
ACGTcount: A:0.49, C:0.04, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTAGGGCTAAAATGTAAAATAAATG
Found at i:81262855 original size:2 final size:2
Alignment explanation
Indices: 81262810--81262844 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
81262800 AATATATGTC
* *
81262810 TA TA AA TA TA TA TA TA TA TA TA TA TA TG TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81262845 TCGATTATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:81263684 original size:20 final size:20
Alignment explanation
Indices: 81263659--81263698 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
81263649 AGTATGACTC
81263659 AAATTGATATAATTATATGT
1 AAATTGATATAATTATATGT
81263679 AAATTGATATAATTATATGT
1 AAATTGATATAATTATATGT
81263699 GCATAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (20 bp):
AAATTGATATAATTATATGT
Found at i:81265871 original size:16 final size:16
Alignment explanation
Indices: 81265852--81265887 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
81265842 GGCAAAAGTC
81265852 GAAATGCCAAAAAGCT
1 GAAATGCCAAAAAGCT
**
81265868 GAAATGCTGAAAAGCT
1 GAAATGCCAAAAAGCT
81265884 GAAA
1 GAAA
81265888 GTTGGGCTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.14, G:0.22, T:0.14
Consensus pattern (16 bp):
GAAATGCCAAAAAGCT
Found at i:81266029 original size:18 final size:19
Alignment explanation
Indices: 81265994--81266031 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
81265984 AGAATTAGCC
*
81265994 AAATGGGCCTGAATAGGCT
1 AAATGAGCCTGAATAGGCT
81266013 AAATGAGCCTG-ATAGGCT
1 AAATGAGCCTGAATAGGCT
81266031 A
1 A
81266032 TTGGGCCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (19 bp):
AAATGAGCCTGAATAGGCT
Found at i:81266192 original size:29 final size:29
Alignment explanation
Indices: 81266137--81266207 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
81266127 ATATGAAGGC
*
81266137 GAATTGGGCCTAGTCGGCCATAAGAATAT
1 GAATTGGGCCTAGTAGGCCATAAGAATAT
**
81266166 GAATTGGGCC-AGATAGGCCATTTGAATA-
1 GAATTGGGCCTAG-TAGGCCATAAGAATAT
81266194 -ATATTGGGCCTAGT
1 GA-ATTGGGCCTAGT
81266208 GGGCTATATG
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
27 1 0.03
28 11 0.31
29 24 0.67
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
GAATTGGGCCTAGTAGGCCATAAGAATAT
Found at i:81272123 original size:27 final size:27
Alignment explanation
Indices: 81272093--81272615 Score: 609
Period size: 27 Copynumber: 19.4 Consensus size: 27
81272083 CCCCAAAATA
** *
81272093 GGTAAAATGACCGTAATACCCCTACAA
1 GGTAAAATGACCGTAATACCCCTGTAG
*
81272120 GGTAAAATGACCGTAATATCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
81272147 GGTAAAATGACCATAATACCCATGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * * *
81272174 GGTAAAATAACCGTATTGCCCTTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
81272201 GGTAAAATGACTGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
81272228 GGTAAAATGATCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
81272255 GGTAAAATGATCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
81272282 GGTAAAATGACTGTAATACCCTTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
81272309 GGTAAAATGACCGTAAT-GCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* ** *
81272335 GATAAAATGATTGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
*
81272362 GGTAAAATGACCATAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
81272389 GGTAAAATGATCATAATACACCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
81272416 GGTAAAATGACCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
81272443 GGTAAAATGACCGTAATGCCCTTATAAG
1 GGTAAAATGACCGTAATACCCCTGT-AG
** *
81272471 GG-AAAATGACCGTAATACTTCTGTCG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
81272497 GGTTAAATGACCGTAATACCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
** * *
81272524 GGTAAAATGAATGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
81272551 GGTAAAATGGCCGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
81272578 GGTAAAATGACCGTGATACCCTTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
81272605 GGTAAAATGAC
1 GGTAAAATGAC
81272616 GAGTAGCCCT
Statistics
Matches: 424, Mismatches: 69, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
26 24 0.06
27 396 0.93
28 4 0.01
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:81272792 original size:27 final size:26
Alignment explanation
Indices: 81272752--81272870 Score: 114
Period size: 27 Copynumber: 4.5 Consensus size: 26
81272742 ATGGAAGAAG
*
81272752 TACTG-TACTGGTGGCTATGTCACAT
1 TACTGTTACTGGTGGCTATGCCACAT
81272777 TCACTGTTACTGGTGGCTATGCCACAAT
1 T-ACTGTTACTGGTGGCTATGCCAC-AT
* *
81272805 TACTGATACTGGTGGCTTTGCCACATT
1 TACTGTTACTGGTGGCTATGCCACA-T
* *** *
81272832 TACTGTTTCTGGCAACTATGCTACAT
1 TACTGTTACTGGTGGCTATGCCACAT
* *
81272858 TATTATTACTGGT
1 TACTGTTACTGGT
81272871 AGCTTTACTG
Statistics
Matches: 76, Mismatches: 14, Indels: 7
0.78 0.14 0.07
Matches are distributed among these distances:
25 1 0.01
26 15 0.20
27 57 0.75
28 3 0.04
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (26 bp):
TACTGTTACTGGTGGCTATGCCACAT
Found at i:81273035 original size:33 final size:33
Alignment explanation
Indices: 81272993--81273057 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
81272983 CATTACACTG
* * *
81272993 TACTGTTACTGTATATGGCTAAGTCCCAGACTA
1 TACTGTTACTGAATAGGGCTAAGGCCCAGACTA
*
81273026 TACTGTTACTGAATAGGGCTCAGGCCCAGACT
1 TACTGTTACTGAATAGGGCTAAGGCCCAGACT
81273058 GTTACTACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (33 bp):
TACTGTTACTGAATAGGGCTAAGGCCCAGACTA
Found at i:81277234 original size:28 final size:28
Alignment explanation
Indices: 81277202--81277270 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
81277192 GCGTAGATCA
81277202 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
81277230 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
81277258 CGATA-TACCCCTA
1 CGAAATTACCCCTA
81277271 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:81283571 original size:20 final size:20
Alignment explanation
Indices: 81283546--81283583 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
81283536 GTTTATTCGC
*
81283546 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
81283566 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
81283584 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:81285244 original size:28 final size:28
Alignment explanation
Indices: 81285212--81285280 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
81285202 GCGTAGATCA
81285212 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
81285240 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
81285268 CGATA-TACCCCTA
1 CGAAATTACCCCTA
81285281 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:81289042 original size:49 final size:50
Alignment explanation
Indices: 81288931--81289059 Score: 149
Period size: 49 Copynumber: 2.6 Consensus size: 50
81288921 TGAGATGTGT
* *
81288931 TAGTGTAAGACCATGTC-GGAACATGGCATTGGCACGGATATGTGAGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGAGC
* * * * *
81288980 TAGTGCAAAACCATGTCTGGGACATGGCATCGGC-CTTGAT-TTTGATAG-
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGAGAGC
81289028 TCAGTGTAAGACCATGTCTGGGACATGGCATC
1 T-AGTGTAAGACCATGTCTGGGACATGGCATC
81289060 TGTATTATAC
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
48 1 0.01
49 50 0.74
50 17 0.25
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (50 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGAGC
Found at i:81298138 original size:50 final size:50
Alignment explanation
Indices: 81298019--81298208 Score: 222
Period size: 50 Copynumber: 3.8 Consensus size: 50
81298009 GTAGCCGAAG
* * *
81298019 CTATCTGGTACGCATAGTAGCCTGCACATAGTACTACACACGTG-ACTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACTAA
* *
81298068 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACTAA
* * * * *
81298118 CCATCTGATACACGTAGTAGCTTGCACTTAGTACTATACACGTGATC-ATA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACTA-A
* * * *
81298168 GTTTTTGGGTACACATAGTAGCCTGCACTTAGTACTACACA
1 CTATCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACA
81298209 TGCGACCTCA
Statistics
Matches: 118, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 40 0.34
50 48 0.41
51 30 0.25
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (50 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACTAA
Found at i:81300389 original size:15 final size:15
Alignment explanation
Indices: 81300342--81300397 Score: 71
Period size: 15 Copynumber: 3.7 Consensus size: 15
81300332 CAAGAAAACT
81300342 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
81300357 -AGATAGAA-AAACCCA
1 GA-ATA-AAGAAATCCA
81300372 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
81300387 GAATAAAGAAA
1 GAATAAAGAAA
81300398 CCCAAGATAC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
14 3 0.09
15 29 0.83
16 3 0.09
ACGTcount: A:0.62, C:0.12, G:0.14, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:81303473 original size:49 final size:49
Alignment explanation
Indices: 81303404--81303626 Score: 216
Period size: 49 Copynumber: 4.5 Consensus size: 49
81303394 CTGGTACGCA
* * * *
81303404 TAGTAGCCTGCACATGGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* *
81303453 TAGTAGCCTACACTTAGTACTACGCACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* * ** * *
81303502 TAGTATCCTGCACTTAG--GTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * * * * *
81303550 CAGGAGCCTGCACTTAGTACTACAAACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
*
81303601 TAGTAGCCTGCACTTACTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
81303627 TGCGACCTCA
Statistics
Matches: 138, Mismatches: 31, Indels: 8
0.78 0.18 0.05
Matches are distributed among these distances:
47 12 0.09
48 26 0.19
49 58 0.42
50 10 0.07
51 31 0.22
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:81307077 original size:29 final size:29
Alignment explanation
Indices: 81307044--81307174 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
81307034 GTGACGAGAT
81307044 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
81307073 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
81307102 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
81307131 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
81307160 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
81307175 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:81315211 original size:29 final size:29
Alignment explanation
Indices: 81315178--81315308 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
81315168 GTGACGAGAT
81315178 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
81315207 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
81315236 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
81315265 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
81315294 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
81315309 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:81325135 original size:24 final size:24
Alignment explanation
Indices: 81325108--81325290 Score: 321
Period size: 24 Copynumber: 7.6 Consensus size: 24
81325098 CTTATTATGT
* * *
81325108 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
81325132 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
81325156 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
81325180 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
81325204 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
81325228 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
81325252 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
81325276 TCGCACACATAGTGC
1 TCGCACACATAGTGC
81325291 ATTTGAGATA
Statistics
Matches: 154, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 154 1.00
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:81325142 original size:48 final size:47
Alignment explanation
Indices: 81325086--81325290 Score: 293
Period size: 48 Copynumber: 4.3 Consensus size: 47
81325076 ACCGAATGTG
* ** * * *
81325086 GCACACATAGTGCTTATTATGTTCGCACACATAGAGCTATAGCAAATC
1 GCACACATAGTGCTTAGTA-AATCGCACACATAGTGCCATAGTAAATC
81325134 GCACACATAGTGCTATAGTAAATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATCGCACACATAGTGCCATAGTAAATC
*
81325182 GCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATCGCACACATAGTGCCATAGTAAATC
* *
81325230 GCACACATAGTGCCATAGTGAATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATCGCACACATAGTGCCATAGTAAATC
81325278 GCACACATAGTGC
1 GCACACATAGTGC
81325291 ATTTGAGATA
Statistics
Matches: 147, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
47 1 0.01
48 141 0.96
49 5 0.03
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.22
Consensus pattern (47 bp):
GCACACATAGTGCTTAGTAAATCGCACACATAGTGCCATAGTAAATC
Found at i:81327717 original size:2 final size:2
Alignment explanation
Indices: 81327710--81327739 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
81327700 ATTTGGCACT
81327710 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81327740 AGCATATGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81328300 original size:69 final size:69
Alignment explanation
Indices: 81328189--81328323 Score: 234
Period size: 69 Copynumber: 2.0 Consensus size: 69
81328179 TAGACCATTC
*
81328189 GGTGTTCTTTTAATATACGTCTCAATTGACACAGGACCTTTTAGTCTTGCGCAATCTACTTAGAT
1 GGTGTTCTTTTAATATACGTCTAAATTGACACAGGACCTTTTAGTCTTGCGCAATCTACTTAGAT
81328254 GTTT
66 GTTT
* * *
81328258 GGTGTTCTTTTAATATATGTCTAAATTGATATAGGACCTTTTAGTCTTGCGCAATCTACTTAGAT
1 GGTGTTCTTTTAATATACGTCTAAATTGACACAGGACCTTTTAGTCTTGCGCAATCTACTTAGAT
81328323 G
66 G
81328324 AACTTATAAG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.41
Consensus pattern (69 bp):
GGTGTTCTTTTAATATACGTCTAAATTGACACAGGACCTTTTAGTCTTGCGCAATCTACTTAGAT
GTTT
Found at i:81330107 original size:43 final size:43
Alignment explanation
Indices: 81330009--81330108 Score: 155
Period size: 43 Copynumber: 2.3 Consensus size: 43
81329999 GAGTAAATGA
* * *
81330009 CACTAAGTGTGCAATACAATTATAGCTTCGGCTAATTATTTGG
1 CACTAAGTGTGCGATACAATTATAGCTTCGACTAATTAATTGG
**
81330052 CACTAAGTGTGCGATATGATTATAGCTTCGACTAATTAATTGG
1 CACTAAGTGTGCGATACAATTATAGCTTCGACTAATTAATTGG
81330095 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
81330109 GTTCGTTGAA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (43 bp):
CACTAAGTGTGCGATACAATTATAGCTTCGACTAATTAATTGG
Found at i:81338001 original size:38 final size:39
Alignment explanation
Indices: 81337950--81338291 Score: 178
Period size: 38 Copynumber: 8.0 Consensus size: 39
81337940 GGAATGGAAA
*
81337950 AACGTGGTGCTAAGTGGATATACCG-CAGTTATACGTGT
1 AACGTGGTGCTAAGTGGATATACCGACAGTTATACATGT
*
81337988 AACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGT
1 AACGTGGTGCTAAGTGGATATA-C-CG-----ACA-GTT-ATACATGT
*
81338036 AACGTGGTGCTAAGTGGATATGCCATGGTTACA-TATATTGATTCAT-T
1 AACGTGGTGCTAAGTGGATATACC---G--ACAGT-TA-T-A--CATGT
* **
81338083 AACGTGGTGCTAAGTGGATATACC-ACGGTTATATGTGT
1 AACGTGGTGCTAAGTGGATATACCGACAGTTATACATGT
*
81338121 AACGTGGTGCTAAGTGGATATACCATGATTACACATATTGATACATGT
1 AACGTGGTGCTAAGTGGATATACC--G-----ACA-GTT-ATACATGT
*
81338169 AACGTGGTGCTAAGTGGATATGCCACGGTTACA-TATATTGATTCAT-T
1 AACGTGGTGCTAAGTGGATAT---ACCG--ACAGT-TA-T-A--CATGT
* *
81338216 AACGTGGTGCTAAGTGGATATACC-ACGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCGACAGTTATACATGT
* *
81338254 AACGTGGTGCTAAGTGGATATGCC-ACGGTTATACATGT
1 AACGTGGTGCTAAGTGGATATACCGACAGTTATACATGT
81338292 TAATTTGAAA
Statistics
Matches: 243, Mismatches: 21, Indels: 80
0.71 0.06 0.23
Matches are distributed among these distances:
37 4 0.02
38 84 0.35
39 3 0.01
40 3 0.01
41 8 0.03
42 2 0.01
44 6 0.02
45 4 0.02
46 13 0.05
47 51 0.21
48 61 0.25
49 2 0.01
51 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (39 bp):
AACGTGGTGCTAAGTGGATATACCGACAGTTATACATGT
Found at i:81338056 original size:48 final size:48
Alignment explanation
Indices: 81337980--81338251 Score: 352
Period size: 48 Copynumber: 5.9 Consensus size: 48
81337970 TACCGCAGTT
* *
81337980 ATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* * *
81338028 ATACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
*
81338076 ATTCAT-TAACGTGGTGCTAAGTGGATATACCACGGTT----ATA-TG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* *
81338118 -----TGTAACGTGGTGCTAAGTGGATATACCATGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* *
81338161 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* *
81338209 ATTCAT-TAACGTGGTGCTAAGTGGATATACCACGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACAT
81338252 GTAACGTGGT
Statistics
Matches: 195, Mismatches: 18, Indels: 23
0.83 0.08 0.10
Matches are distributed among these distances:
37 1 0.01
38 29 0.15
42 5 0.03
43 5 0.03
47 63 0.32
48 92 0.47
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.32
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
Found at i:81338138 original size:85 final size:86
Alignment explanation
Indices: 81338033--81338199 Score: 282
Period size: 85 Copynumber: 2.0 Consensus size: 86
81338023 TATTGATACA
* * * *
81338033 TGTAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCAT-TAACGTGGTGCTAAG
1 TGTAACGTGGTGCTAAGTGGATATACCATGATTACACATATTGATACATGTAACGTGGTGCTAAG
81338097 TGGATATACCACGGTTATATG
66 TGGATATACCACGGTTATATG
81338118 TGTAACGTGGTGCTAAGTGGATATACCATGATTACACATATTGATACATGTAACGTGGTGCTAAG
1 TGTAACGTGGTGCTAAGTGGATATACCATGATTACACATATTGATACATGTAACGTGGTGCTAAG
*
81338183 TGGATATGCCACGGTTA
66 TGGATATACCACGGTTA
81338200 CATATATTGA
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
85 45 0.59
86 31 0.41
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (86 bp):
TGTAACGTGGTGCTAAGTGGATATACCATGATTACACATATTGATACATGTAACGTGGTGCTAAG
TGGATATACCACGGTTATATG
Found at i:81338188 original size:133 final size:133
Alignment explanation
Indices: 81337950--81338289 Score: 590
Period size: 133 Copynumber: 2.6 Consensus size: 133
81337940 GGAATGGAAA
* *
81337950 AACGTGGTGCTAAGTGGATATACCGCAGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
*
81338015 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTC
66 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTC
81338080 ATT
131 ATT
* *
81338083 AACGTGGTGCTAAGTGGATATACCACGGTTATATGTGTAACGTGGTGCTAAGTGGATATACCATG
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
81338148 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTC
66 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTC
81338213 ATT
131 ATT
* * *
81338216 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
* *
81338281 GTTATACAT
66 ATTACACAT
81338290 GTTAATTTGA
Statistics
Matches: 195, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
133 195 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (133 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTC
ATT
Found at i:81345011 original size:27 final size:28
Alignment explanation
Indices: 81344954--81345023 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
81344944 AAACTTGTAC
*
81344954 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
81344982 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
81345009 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
81345024 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:81345034 original size:27 final size:27
Alignment explanation
Indices: 81344954--81345035 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
81344944 AAACTTGTAC
* * *
81344954 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
81344982 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
81345009 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
81345036 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:81352935 original size:27 final size:28
Alignment explanation
Indices: 81352878--81352947 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
81352868 AAACTTGTAC
*
81352878 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
81352906 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
81352933 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
81352948 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:81352958 original size:27 final size:27
Alignment explanation
Indices: 81352878--81352959 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
81352868 AAACTTGTAC
* * *
81352878 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
81352906 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
81352933 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
81352960 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:81354794 original size:40 final size:40
Alignment explanation
Indices: 81354735--81354858 Score: 178
Period size: 40 Copynumber: 3.1 Consensus size: 40
81354725 TGAATGATAC
* * *
81354735 CCGGGCTAAGTCCCAAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
*
81354775 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
**
81354815 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
81354855 CCGG
1 CCGG
81354859 AACGGTTTCT
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 76 0.97
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:81356124 original size:40 final size:40
Alignment explanation
Indices: 81356065--81356188 Score: 178
Period size: 40 Copynumber: 3.1 Consensus size: 40
81356055 TGAATGATAC
* * *
81356065 CCGGGCTAAGTCCCAAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
*
81356105 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
**
81356145 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
81356185 CCGG
1 CCGG
81356189 AACGGTTTCT
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 76 0.97
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:81357452 original size:40 final size:40
Alignment explanation
Indices: 81357393--81357516 Score: 178
Period size: 40 Copynumber: 3.1 Consensus size: 40
81357383 TGAATGATAC
* * *
81357393 CCGGGCTAAGTCCCAAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
*
81357433 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
**
81357473 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
81357513 CCGG
1 CCGG
81357517 AACGGTTTCT
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 76 0.97
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:81358776 original size:40 final size:40
Alignment explanation
Indices: 81358717--81358840 Score: 178
Period size: 40 Copynumber: 3.1 Consensus size: 40
81358707 TGAATGATAC
* * *
81358717 CCGGGCTAAGTCCCAAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
*
81358757 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
**
81358797 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
81358837 CCGG
1 CCGG
81358841 AACGGTTTCT
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 76 0.97
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:81360103 original size:40 final size:40
Alignment explanation
Indices: 81360044--81360167 Score: 178
Period size: 40 Copynumber: 3.1 Consensus size: 40
81360034 TGAATGATAC
* * *
81360044 CCGGGCTAAGTCCCAAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
*
81360084 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
**
81360124 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
81360164 CCGG
1 CCGG
81360168 AACGGTTTCT
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 76 0.97
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:81361430 original size:40 final size:40
Alignment explanation
Indices: 81361371--81361494 Score: 178
Period size: 40 Copynumber: 3.1 Consensus size: 40
81361361 TGAATGATAC
* * *
81361371 CCGGGCTAAGTCCCAAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
*
81361411 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
**
81361451 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
81361491 CCGG
1 CCGG
81361495 AACGGTTTCT
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 76 0.97
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:81362758 original size:40 final size:40
Alignment explanation
Indices: 81362699--81362822 Score: 178
Period size: 40 Copynumber: 3.1 Consensus size: 40
81362689 TGAATGATAC
* * *
81362699 CCGGGCTAAGTCCCAAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
*
81362739 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
**
81362779 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
81362819 CCGG
1 CCGG
81362823 AACGGTTTCT
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 76 0.97
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:81364084 original size:40 final size:40
Alignment explanation
Indices: 81364025--81364148 Score: 178
Period size: 40 Copynumber: 3.1 Consensus size: 40
81364015 TGAATGATAC
* * *
81364025 CCGGGCTAAGTCCCAAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
*
81364065 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
**
81364105 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
81364145 CCGG
1 CCGG
81364149 AACGGTTTCT
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 76 0.97
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:81365411 original size:40 final size:40
Alignment explanation
Indices: 81365352--81365475 Score: 178
Period size: 40 Copynumber: 3.1 Consensus size: 40
81365342 TGAATGATAC
* * *
81365352 CCGGGCTAAGTCCCAAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
*
81365392 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
**
81365432 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
81365472 CCGG
1 CCGG
81365476 AACGGTTTCT
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 76 0.97
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:81366742 original size:40 final size:40
Alignment explanation
Indices: 81366683--81366806 Score: 169
Period size: 40 Copynumber: 3.1 Consensus size: 40
81366673 TGAATGATAC
* * * *
81366683 CCGGGTTAAGTCCCAAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
*
81366723 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
**
81366763 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
81366803 CCGG
1 CCGG
81366807 AACGGTTTCT
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
40 75 0.97
41 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:81368070 original size:40 final size:40
Alignment explanation
Indices: 81368012--81368179 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
81368002 TGAATGATAC
* * *
81368012 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
**
81368052 CCGGGCTAAGACAAGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
81368092 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
81368132 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
81368172 CC-GGCTAA
1 CCGGGCTAA
81368180 ATTCCGAAGA
Statistics
Matches: 110, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
39 5 0.05
40 103 0.94
41 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:81373610 original size:40 final size:40
Alignment explanation
Indices: 81373543--81373714 Score: 215
Period size: 40 Copynumber: 4.3 Consensus size: 40
81373533 ACCCAAGTAT
* *
81373543 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCGCAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
81373582 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATAC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
81373622 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
81373662 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
81373702 CTTCGGATCTTAG
1 CTTCGGGTCTTAG
81373715 TCCGATTATC
Statistics
Matches: 113, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.12
40 97 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:81381837 original size:40 final size:40
Alignment explanation
Indices: 81381779--81381872 Score: 163
Period size: 40 Copynumber: 2.4 Consensus size: 40
81381769 TCTTTGGGAT
*
81381779 TTAG-CCGGATATAACAACTCGTACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
81381818 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
81381858 TTAGCCCGGATATAA
1 TTAGCCCGGATATAA
81381873 TCTTTCAATT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 4 0.08
40 47 0.92
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:81385996 original size:43 final size:43
Alignment explanation
Indices: 81385949--81386103 Score: 152
Period size: 43 Copynumber: 3.6 Consensus size: 43
81385939 TCCCAGATAT
* * * *
81385949 GGTCTTACATGTTATCACATATCGATGCCACTGTCCCAAACAG
1 GGTCTTACACGTAATCACATATCGATGCCAATGTCCCAAACAA
* * * *
81385992 GGTCTTACACGAAATAAAATAACGATGCCAATGTCCCAAA-AA
1 GGTCTTACACGTAATCACATATCGATGCCAATGTCCCAAACAA
** * *
81386034 TGGTCTTACACGTAATCACAGTA-AAATGCCAATATCCCAGACAA
1 -GGTCTTACACGTAATCACA-TATCGATGCCAATGTCCCAAACAA
* *
81386078 GGTCTTACATGTAATCACATCTCGAT
1 GGTCTTACACGTAATCACATATCGAT
81386104 AACCTAATGT
Statistics
Matches: 89, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
42 2 0.02
43 83 0.93
44 4 0.04
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (43 bp):
GGTCTTACACGTAATCACATATCGATGCCAATGTCCCAAACAA
Found at i:81386333 original size:47 final size:47
Alignment explanation
Indices: 81386264--81386358 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
81386254 AGACATTTAT
* *
81386264 TTGCATATGAACTTACCTCGTATTATGGATTGACGTATCGGGTTGAC
1 TTGCATATGAACTTACCTCGTATTACGGATTGACGTATCGGGTCGAC
81386311 TTGCATATGAACTTACCTCGTATTACGGATTGACGTATCGGGTCGAC
1 TTGCATATGAACTTACCTCGTATTACGGATTGACGTATCGGGTCGAC
81386358 T
1 T
81386359 ATTCGACAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (47 bp):
TTGCATATGAACTTACCTCGTATTACGGATTGACGTATCGGGTCGAC
Found at i:81390753 original size:18 final size:19
Alignment explanation
Indices: 81390712--81390755 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
81390702 CAGGTTGAGG
81390712 ACACGGGCGTGTTCCAAGCC
1 ACACGGGCGTGTT-CAAGCC
81390732 ACACGGGCGTGTGT-AA-CC
1 ACACGGGCGTGT-TCAAGCC
81390750 ACACGG
1 ACACGG
81390756 CCTACCCACA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 8 0.35
19 2 0.09
20 12 0.52
21 1 0.04
ACGTcount: A:0.23, C:0.32, G:0.32, T:0.14
Consensus pattern (19 bp):
ACACGGGCGTGTTCAAGCC
Found at i:81393226 original size:65 final size:66
Alignment explanation
Indices: 81393146--81393277 Score: 178
Period size: 65 Copynumber: 2.0 Consensus size: 66
81393136 GCAAATTGCT
* * * * *
81393146 CAACTTAAGGCAGAGGTAGCATCGAGAGAAGCAGA-GC-TCAAAGAAAATATGATGAACTCTAGC
1 CAACTTAAAGCAGAGGTAGCAGCGAGAGAAGCAGAGGCAAC-AAGAAAATATGACGAACTCCAGC
81393209 TA
65 TA
* *
81393211 CAACTTAAAGCAGAGGTAGGAGCGAGGGAAGCAGAGGCAACAAGAAAATATGACGAACTCCAGCT
1 CAACTTAAAGCAGAGGTAGCAGCGAGAGAAGCAGAGGCAACAAGAAAATATGACGAACTCCAGCT
81393276 A
66 A
81393277 C
1 C
81393278 CATTTCAAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
65 31 0.53
66 26 0.45
67 1 0.02
ACGTcount: A:0.42, C:0.18, G:0.27, T:0.14
Consensus pattern (66 bp):
CAACTTAAAGCAGAGGTAGCAGCGAGAGAAGCAGAGGCAACAAGAAAATATGACGAACTCCAGCT
A
Found at i:81393627 original size:43 final size:43
Alignment explanation
Indices: 81393591--81393712 Score: 165
Period size: 43 Copynumber: 2.8 Consensus size: 43
81393581 TTTAGTGGTA
*
81393591 CTTTTACTATAAACGCCACTAAAGAACATGATCTTTAGCCA-CG
1 CTTTTACTAAAAACGCCACTAAAGAACATGATCTTTAG-CAGCG
* * * * *
81393634 CTTTTATTACAAACGGCACTATAGAACATGATCTTTCGCAGCG
1 CTTTTACTAAAAACGCCACTAAAGAACATGATCTTTAGCAGCG
*
81393677 CTTTTACTAAAAACGCCGCTAAAGAACATGATCTTT
1 CTTTTACTAAAAACGCCACTAAAGAACATGATCTTT
81393713 TGTGTTGTTT
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 2 0.03
43 66 0.97
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.30
Consensus pattern (43 bp):
CTTTTACTAAAAACGCCACTAAAGAACATGATCTTTAGCAGCG
Found at i:81393808 original size:42 final size:42
Alignment explanation
Indices: 81393678--81393808 Score: 118
Period size: 42 Copynumber: 3.1 Consensus size: 42
81393668 TTCGCAGCGC
* * * * * * * *
81393678 TTTTACTAAAAACGCCGCTAAAGAACATGATCTTTTGTGTTG
1 TTTTAATAAAAGCGCCGCTAAAGATCATGTTCTATAGCGATG
* * * * * *
81393720 TTTGTAAAAAAAGTGACACTAAAAATCATGTTCTATAGCGACG
1 TTT-TAATAAAAGCGCCGCTAAAGATCATGTTCTATAGCGATG
*
81393763 TTTTAATAAAAGCGCCGCTAAAGATCATGTTCTATAGCGGTG
1 TTTTAATAAAAGCGCCGCTAAAGATCATGTTCTATAGCGATG
81393805 TTTT
1 TTTT
81393809 GCCACATAAA
Statistics
Matches: 67, Mismatches: 21, Indels: 2
0.74 0.23 0.02
Matches are distributed among these distances:
42 39 0.58
43 28 0.42
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.34
Consensus pattern (42 bp):
TTTTAATAAAAGCGCCGCTAAAGATCATGTTCTATAGCGATG
Found at i:81398422 original size:48 final size:48
Alignment explanation
Indices: 81398360--81399025 Score: 976
Period size: 48 Copynumber: 13.9 Consensus size: 48
81398350 TATATATGTG
* *
81398360 TGTGGTAAAGCCGAATAGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
81398408 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGGTATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
81398456 TGTGGTAAAGCCGAGTGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
81398504 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
81398552 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGATCTCGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT--G--A-G---AT-A--T-GTATA
81398612 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG--TA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
81398658 -----T----CCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
81398697 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
81398745 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGATATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
81398793 TGTGGTAAAGCCGAATGGATAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
81398841 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATAAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
81398889 GGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
81398937 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTGTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
81398985 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
81399026 GTGTGTATAT
Statistics
Matches: 569, Mismatches: 26, Indels: 46
0.89 0.04 0.07
Matches are distributed among these distances:
37 34 0.06
39 2 0.00
41 1 0.00
44 1 0.00
46 2 0.00
48 474 0.83
49 1 0.00
50 1 0.00
51 1 0.00
52 3 0.01
53 1 0.00
55 1 0.00
56 3 0.01
57 1 0.00
58 1 0.00
59 1 0.00
60 41 0.07
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:81398672 original size:37 final size:37
Alignment explanation
Indices: 81398622--81398695 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
81398612 TGTGGTAAAG
81398622 CCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
1 CCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
81398659 CCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
1 CCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
81398696 ATGTGGTAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.08, G:0.24, T:0.32
Consensus pattern (37 bp):
CCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
Found at i:81399216 original size:37 final size:37
Alignment explanation
Indices: 81399166--81399268 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
81399156 GGAAATATAT
81399166 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
81399203 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
81399240 TCCGGGTAAGACCCGATAACTACTTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
81399269 GGACTATTCG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:81403627 original size:30 final size:29
Alignment explanation
Indices: 81403533--81403634 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
81403523 TATAGTGAAT
* * *
81403533 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
81403562 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
81403590 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
81403620 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
81403635 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:81405594 original size:47 final size:47
Alignment explanation
Indices: 81405540--81405697 Score: 289
Period size: 47 Copynumber: 3.4 Consensus size: 47
81405530 TGCTCAAATT
*
81405540 ATAAGTTACTTAGTTAAGCTTGTTTAATTTGTTCTTAATATTTCGGG
1 ATAAGTTACTTAGTTAAGCTTGTTTAATTTGTTCTTAATATTTCCGG
81405587 ATAAGTTACTTAGTTAAGCTTGTTTAATTTGTTCTTAATATTTCCGG
1 ATAAGTTACTTAGTTAAGCTTGTTTAATTTGTTCTTAATATTTCCGG
* *
81405634 ATAAGTTACTTAGTTAAGCTTGTTTAATTTGCTCTTAATATTTCCGC
1 ATAAGTTACTTAGTTAAGCTTGTTTAATTTGTTCTTAATATTTCCGG
81405681 ATAAGTTACTTAGTTAA
1 ATAAGTTACTTAGTTAA
81405698 AGAAAATTTT
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 108 1.00
ACGTcount: A:0.27, C:0.11, G:0.15, T:0.47
Consensus pattern (47 bp):
ATAAGTTACTTAGTTAAGCTTGTTTAATTTGTTCTTAATATTTCCGG
Found at i:81406626 original size:46 final size:45
Alignment explanation
Indices: 81406499--81406633 Score: 225
Period size: 45 Copynumber: 3.0 Consensus size: 45
81406489 ATATCGCACA
81406499 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGTCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGTCGGTGAG
* *
81406544 ATACTATTCGGACCTTTGAGCCTAGCAGGCTATAATGTTGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGTCGGTGAG
* *
81406589 ATACTATTTGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 ATACTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGTCGGTGA
81406634 TTTGATAAAA
Statistics
Matches: 83, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
45 58 0.70
46 25 0.30
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGTCGGTGAG
Found at i:81409708 original size:40 final size:40
Alignment explanation
Indices: 81409664--81409772 Score: 139
Period size: 39 Copynumber: 2.8 Consensus size: 40
81409654 TTCACAATTT
* *
81409664 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
81409704 GCACAATTGCCTTCGGGTCTTA-ACCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
81409743 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
81409773 ATCATTCAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
39 31 0.53
40 27 0.47
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:81412985 original size:20 final size:20
Alignment explanation
Indices: 81412960--81413011 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
81412950 GATTTCGTAC
81412960 TTTGGCCCATTTTCTCCATT
1 TTTGGCCCATTTTCTCCATT
81412980 TTTGGCCCATTTTCTCCATT
1 TTTGGCCCATTTTCTCCATT
81413000 TTTGGCCCATTT
1 TTTGGCCCATTT
81413012 CTCATTTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.10, C:0.29, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTGGCCCATTTTCTCCATT
Found at i:81430605 original size:43 final size:42
Alignment explanation
Indices: 81430533--81430646 Score: 110
Period size: 42 Copynumber: 2.7 Consensus size: 42
81430523 CATAAACAAG
* *
81430533 TACAATGCCGACGT-CCTGAC-GTGGTCTTACAT-ATAATTCA-A
1 TACAATGCCGATGTCCCAGACAG-GGTCTTACATGA-AATT-AGA
**
81430574 TAACAATGCCTCTGTCCCAGACAGGGTCTTACATGAAATTAGA
1 T-ACAATGCCGATGTCCCAGACAGGGTCTTACATGAAATTAGA
* *
81430617 TACGATGCCGATGTCCCAGACATGGTCTTA
1 TACAATGCCGATGTCCCAGACAGGGTCTTA
81430647 TACGTAAATC
Statistics
Matches: 60, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
41 1 0.02
42 36 0.60
43 21 0.35
44 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (42 bp):
TACAATGCCGATGTCCCAGACAGGGTCTTACATGAAATTAGA
Found at i:81435113 original size:6 final size:6
Alignment explanation
Indices: 81435095--81435238 Score: 82
Period size: 6 Copynumber: 23.3 Consensus size: 6
81435085 AAAAAACATT
* *
81435095 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
81435144 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCGGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * * *
81435194 ATCAAA ATCAGA ATCGGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
81435239 GTGAATGCAA
Statistics
Matches: 104, Mismatches: 20, Indels: 28
0.68 0.13 0.18
Matches are distributed among these distances:
5 8 0.08
6 80 0.77
7 12 0.12
8 4 0.04
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:81435140 original size:25 final size:25
Alignment explanation
Indices: 81435109--81435204 Score: 106
Period size: 25 Copynumber: 3.8 Consensus size: 25
81435099 GAACTAGAAT
* *
81435109 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
81435134 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
81435159 CAGAATCAAAATCAGAATC-GGTAT
1 CAGAATCAGAATCAGAATCAGGTAA
*
81435183 CAGGTAA-CAGAATCAAAATCAG
1 CA-G-AATCAGAATCAGAATCAG
81435205 AATCGGTATC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
24 6 0.10
25 51 0.85
26 3 0.05
ACGTcount: A:0.46, C:0.16, G:0.20, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:81435140 original size:31 final size:31
Alignment explanation
Indices: 81435137--81435238 Score: 195
Period size: 31 Copynumber: 3.3 Consensus size: 31
81435127 TAGGTGACAG
*
81435137 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCGGTATCAGGTAACAGAATCAA
81435168 AATCAGAATCGGTATCAGGTAACAGAATCAA
1 AATCAGAATCGGTATCAGGTAACAGAATCAA
81435199 AATCAGAATCGGTATCAGGTAACAGAATCAA
1 AATCAGAATCGGTATCAGGTAACAGAATCAA
81435230 AATCAGAAT
1 AATCAGAAT
81435239 GTGAATGCAA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
31 70 1.00
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.20
Consensus pattern (31 bp):
AATCAGAATCGGTATCAGGTAACAGAATCAA
Found at i:81435669 original size:27 final size:27
Alignment explanation
Indices: 81435640--81435835 Score: 268
Period size: 27 Copynumber: 7.3 Consensus size: 27
81435630 GGGGCAAAAT
* * * *
81435640 GGTAATTTTACCCCATAAGGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
81435667 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
81435694 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
81435721 GGTCATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
81435748 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
81435775 GGTTATTCTACCCTACAGGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
81435802 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
81435829 GATAATT
1 GGTAATT
81435836 ACACAAAGCA
Statistics
Matches: 150, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 2 0.01
27 148 0.99
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:81435849 original size:81 final size:81
Alignment explanation
Indices: 81435640--81435859 Score: 241
Period size: 81 Copynumber: 2.7 Consensus size: 81
81435630 GGGGCAAAAT
* * * * **
81435640 GGTAATTTTACCCCATAAGGGTATCTT-GGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTA
1 GGTAATTCTACCCTACAAGGGTAT-TTCGATAATTCTACCAAACAGGGGTATTTCGGTATTTCTA
*
81435704 CCCTACAAGGGTATTTC
65 CCCTACAAGGGTATCTC
* * * ** *
81435721 GGTCATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT-TATTCTA
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCAAACAGGGGTATTTCGGTAT-TTCTA
*
81435785 CCCTACAGGGGTATCTC
65 CCCTACAAGGGTATCTC
*
81435802 GGTAATTCTACCCTACAAGGGTATTTCGATAA-T-TACACAAAGCAGGGGTATTTTGGTA
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTAC-CAAA-CAGGGGTATTTCGGTA
81435860 ATTTTACAAA
Statistics
Matches: 119, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
79 3 0.03
80 6 0.05
81 110 0.92
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (81 bp):
GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCAAACAGGGGTATTTCGGTATTTCTAC
CCTACAAGGGTATCTC
Found at i:81435861 original size:27 final size:27
Alignment explanation
Indices: 81435817--81435889 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
81435807 TTCTACCCTA
* * *
81435817 CAAGGGTATTTCGATAATTACACAAAG
1 CAAGGGTATTTTGGTAATTACACAAAC
* **
81435844 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTACACAAAC
*
81435871 CAATGGTATTTTGGTAATT
1 CAAGGGTATTTTGGTAATT
81435890 TTATTGATCG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.36
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTACACAAAC
Found at i:81435890 original size:27 final size:27
Alignment explanation
Indices: 81435847--81435935 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
81435837 CACAAAGCAG
*
81435847 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* ** * *
81435874 TGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
81435901 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
81435928 GGGTATTT
1 GGGTATTT
81435936 CATTAATTTT
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.27, C:0.07, G:0.22, T:0.44
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:81435943 original size:54 final size:54
Alignment explanation
Indices: 81435847--81435986 Score: 147
Period size: 54 Copynumber: 2.6 Consensus size: 54
81435837 CACAAAGCAG
** * ** *
81435847 GGGTATTTTGGTAATTTTACAAACCAATGGTATTTTGGTAATTTTATT-GATCGA
1 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTT-TTACATCGA
* *
81435901 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCATTAATTTTTTACATTGA
1 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTTTACATCGA
*** * *
81435955 GGGTAAAATGGTAATTCTGTAAATCAAGGGTA
1 GGGTATTTTGGTAATTTTGTAAACCAAGGGTA
81435987 AGACGGTAAT
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 2 0.03
54 70 0.97
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTTTACATCGA
Found at i:81435969 original size:27 final size:27
Alignment explanation
Indices: 81435953--81436206 Score: 373
Period size: 27 Copynumber: 9.4 Consensus size: 27
81435943 TTTTTACATT
81435953 GAGGGTAAAATGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* * *
81435980 AAGGGTAAGACGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* *
81436007 GAGGGTAAAATAGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
81436034 GAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* *
81436061 GAGGGTAAAATAGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
81436088 GAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* *
81436115 GAGGGTAAAATAGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
81436142 GAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* *
81436169 GAGGGTAAAAATAGTAATTCTATAAATC
1 GAGGGT-AAAATGGTAATTCTGTAAATC
81436197 GAGGGTAAAA
1 GAGGGTAAAA
81436207 CGATAATTAG
Statistics
Matches: 200, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
27 176 0.88
28 24 0.12
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTCTGTAAATC
Found at i:81435997 original size:54 final size:54
Alignment explanation
Indices: 81435953--81436214 Score: 470
Period size: 54 Copynumber: 4.8 Consensus size: 54
81435943 TTTTTACATT
* * * *
81435953 GAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAGACGGTAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
81436007 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
81436061 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
81436115 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
*
81436169 GAGGGTAAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATT
1 GAGGGT-AAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATT
81436215 AGGTAATTTT
Statistics
Matches: 202, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
54 164 0.81
55 38 0.19
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (54 bp):
GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
Found at i:81436275 original size:28 final size:27
Alignment explanation
Indices: 81436217--81436359 Score: 162
Period size: 27 Copynumber: 5.3 Consensus size: 27
81436207 CGATAATTAG
81436217 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTCA
* * *
81436244 GTAATTTTGCAAAACTGAGGGTATTTCT
1 GTAATTTTACAAATC-GAGGGTATTTCA
* **
81436272 GTAATTTTACAAATCGAGGATATTTGG
1 GTAATTTTACAAATCGAGGGTATTTCA
* * *
81436299 GTAATTTTATAAATCGGGGGTACTTT-G
1 GTAATTTTACAAATCGAGGGTA-TTTCA
* *
81436326 GTAATTTTACAAGTTGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTCA
81436353 GTAATTT
1 GTAATTT
81436360 GGTAAACTAA
Statistics
Matches: 97, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 3 0.03
27 67 0.69
28 27 0.28
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAGGGTATTTCA
Found at i:81436350 original size:54 final size:55
Alignment explanation
Indices: 81436216--81436359 Score: 175
Period size: 55 Copynumber: 2.6 Consensus size: 55
81436206 ACGATAATTA
*
81436216 GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAAACTGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAAACTGAGGGTATTTC
* * ** * * *
81436271 TGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATC-GGGGGTACTTT-
1 GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAAACTGAGGGTA-TTTC
* *
81436325 GGTAATTTTACAAGTTGAGGGTATTTCAGTAATTT
1 GGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
81436360 GGTAAACTAA
Statistics
Matches: 74, Mismatches: 14, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
54 35 0.47
55 39 0.53
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (55 bp):
GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAAACTGAGGGTATTTC
Found at i:81438628 original size:29 final size:29
Alignment explanation
Indices: 81438546--81438628 Score: 82
Period size: 29 Copynumber: 2.9 Consensus size: 29
81438536 TGTGAATCTT
* *
81438546 GCACTAAGTGTGCGAA-TGTGGT-TATTGA
1 GCACTAAGTGTGCGAATTGT-ATATATTAA
* *
81438574 GCACTAAGTGTTGCGAGTT-TAAATATTAA
1 GCACTAAGTG-TGCGAATTGTATATATTAA
*
81438603 GCACTAAGTGTGCAAATTGTATATAT
1 GCACTAAGTGTGCGAATTGTATATAT
81438629 ATTTTCCGAG
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
28 16 0.36
29 27 0.61
30 1 0.02
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (29 bp):
GCACTAAGTGTGCGAATTGTATATATTAA
Found at i:81445954 original size:29 final size:29
Alignment explanation
Indices: 81445872--81445954 Score: 82
Period size: 29 Copynumber: 2.9 Consensus size: 29
81445862 TGTGAATCTT
* *
81445872 GCACTAAGTGTGCGAA-TGTGGT-TATTGA
1 GCACTAAGTGTGCGAATTGT-ATATATTAA
* *
81445900 GCACTAAGTGTTGCGAGTT-TAAATATTAA
1 GCACTAAGTG-TGCGAATTGTATATATTAA
*
81445929 GCACTAAGTGTGCAAATTGTATATAT
1 GCACTAAGTGTGCGAATTGTATATAT
81445955 ATTTTCCGAG
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
28 16 0.36
29 27 0.61
30 1 0.02
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (29 bp):
GCACTAAGTGTGCGAATTGTATATATTAA
Found at i:81449691 original size:68 final size:67
Alignment explanation
Indices: 81449619--81449768 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
81449609 CATCATGTGT
* * * *
81449619 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
81449681 ATGTAG
62 ATGTAG
** * *
81449687 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
81449752 AG
66 AG
81449754 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
81449769 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:81449724 original size:64 final size:64
Alignment explanation
Indices: 81449643--81449826 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
81449633 AGACATTATG
* *
81449643 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
81449707 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
81449772 AA
63 AA
* * * *
81449774 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
81449827 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:81454119 original size:68 final size:67
Alignment explanation
Indices: 81454047--81454196 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
81454037 CATCATGTGT
* * * *
81454047 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
81454109 ATGTAG
62 ATGTAG
** * *
81454115 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
81454180 AG
66 AG
81454182 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
81454197 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:81454152 original size:64 final size:64
Alignment explanation
Indices: 81454071--81454254 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
81454061 AGACATTATG
* *
81454071 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
81454135 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
81454200 AA
63 AA
* * * *
81454202 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
81454255 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:81458373 original size:28 final size:27
Alignment explanation
Indices: 81458312--81458420 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
81458302 GGGGAAGCAT
81458312 TCTGGTGGCTATGCCACAAATATCT-A
1 TCTGGTGGCTATGCCACAAATATCTGA
*
81458338 TTTTTGGTGGCTATGCCACAAATATCTGA
1 --TCTGGTGGCTATGCCACAAATATCTGA
* *
81458367 TCCTGGTGGC-ACAGCCACAAATTTCTGTA
1 T-CTGGTGGCTA-TGCCACAAATATCTG-A
* * *
81458396 TCTGGTGACTTTGTCAC-AATATCTG
1 TCTGGTGGCTATGCCACAAATATCTG
81458421 TTCTAGCAGC
Statistics
Matches: 67, Mismatches: 9, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
27 9 0.13
28 55 0.82
29 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTATGCCACAAATATCTGA
Found at i:81461477 original size:39 final size:39
Alignment explanation
Indices: 81461411--81461547 Score: 166
Period size: 39 Copynumber: 3.5 Consensus size: 39
81461401 GCTTAAAGAC
* * *
81461411 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGT
1 CCGCAGGCTTCGTGCTGGTACTATATCCGGACTTAAGGT
* *
81461450 CTGCAGGCTTCGTGCCGGTACTATATCCGGACTTAAGGT
1 CCGCAGGCTTCGTGCTGGTACTATATCCGGACTTAAGGT
* * *
81461489 CCGCAGGCTTCGTACTGGTACTATATCCGGGCTTAAAGT
1 CCGCAGGCTTCGTGCTGGTACTATATCCGGACTTAAGGT
* * *
81461528 CCCGTAGGCTTTGTGTTGGT
1 -CCGCAGGCTTCGTGCTGGT
81461548 GATTGAATTC
Statistics
Matches: 83, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 68 0.82
40 15 0.18
ACGTcount: A:0.17, C:0.24, G:0.29, T:0.30
Consensus pattern (39 bp):
CCGCAGGCTTCGTGCTGGTACTATATCCGGACTTAAGGT
Found at i:81466364 original size:47 final size:44
Alignment explanation
Indices: 81466218--81466486 Score: 182
Period size: 47 Copynumber: 5.8 Consensus size: 44
81466208 TATAAGTTCT
* * ** *
81466218 GATGCATGTCCCAAACATGTCTTACACTAGCACGAAGCTTAGCC
1 GATGCATGTCCCAAACACGTCTTACACTGGCACTCATCTTAGCC
* *
81466262 GATGCATGTCCCAAGCACTTCTTACACTGGCTAC-CATCATTGAGGCC
1 GATGCATGTCCCAAACACGTCTTACACTGGC-ACTCATC-TT-A-GCC
*
81466309 GATGCATGTCCCAAACACGTCTTACACTGGCACTCATCTCTACGTC
1 GATGCATGTCCCAAACACGTCTTACACTGGCACTCATCT-TA-GCC
* * * * * *
81466355 GATGCCATGTCCTAGACATGGTCTTACACTGGCTA-TCATAATGTGGCT
1 GATG-CATGTCCCAAACA-CGTCTTACACTGGC-ACTCAT-CT-TAGCC
* * * * * *
81466403 GATGCATGTCCCAGACCCGTCTTACACTAGCCCTCGTCTCAATGCC
1 GATGCATGTCCCAAACACGTCTTACACTGGCACTCATCT-TA-GCC
* * *
81466449 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA
1 GATG-CATGTCCCAAACA-CGTCTTACACTGGCACTCA
81466487 CATAACCGAA
Statistics
Matches: 177, Mismatches: 34, Indels: 24
0.75 0.14 0.10
Matches are distributed among these distances:
44 29 0.16
45 5 0.03
46 32 0.18
47 71 0.40
48 37 0.21
49 3 0.02
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (44 bp):
GATGCATGTCCCAAACACGTCTTACACTGGCACTCATCTTAGCC
Found at i:81466424 original size:94 final size:93
Alignment explanation
Indices: 81466165--81466482 Score: 317
Period size: 94 Copynumber: 3.4 Consensus size: 93
81466155 CTTCATCGAG
* * * * *
81466165 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCCCGTGTATAA-GT-TCTGATGCATGTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT---AT-CATAATGTGGCTGATGCATGTC
* ** *
81466228 CCAAACATGTCTTACACTAGCACGAAGCT-TA
62 CCAAACACGTCTTACACTAGCACTCATCTCTA
* * * *
81466259 GCCGATG-CATGTCCCA-AGCACT--TCTTACACTGGCTACCATCATTGAGGCCGATGCATGTCC
1 GCCGATGCCATGTCCCAGA-CA-TGGTCTTACACTGGCTATCAT-AATGTGGCTGATGCATGTCC
*
81466320 CAAACACGTCTTACACTGGCACTCATCTCTA
63 CAAACACGTCTTACACTAGCACTCATCTCTA
* *
81466351 CGTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATAATGTGGCTGATGCATGTCCCA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGGCTGATGCATGTCCCA
* * * * *
81466416 GACCCGTCTTACACTAGCCCTCGTCTCAA
65 AACACGTCTTACACTAGCACTCATCTCTA
81466445 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
81466483 CTCACATAAC
Statistics
Matches: 184, Mismatches: 29, Indels: 22
0.78 0.12 0.09
Matches are distributed among these distances:
88 2 0.01
89 1 0.01
90 1 0.01
91 35 0.19
92 15 0.08
93 17 0.09
94 95 0.52
95 18 0.10
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (93 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGGCTGATGCATGTCCCAA
ACACGTCTTACACTAGCACTCATCTCTA
Found at i:81480129 original size:20 final size:20
Alignment explanation
Indices: 81480099--81480143 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
81480089 CTGTTTTATT
81480099 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
81480118 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
81480138 ATGGGC
1 ATGGGC
81480144 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:81480306 original size:62 final size:61
Alignment explanation
Indices: 81480164--81480308 Score: 161
Period size: 61 Copynumber: 2.4 Consensus size: 61
81480154 ATATCTCGTC
* * * *
81480164 TTGTAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATA
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTAATA
* * *
81480225 TTGTAATAGGGCTATGGCCCAGATTAATACTGATATGGGTTAAGGCCCAGT-TAACACTAAT-
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTAATA
*
81480286 TTCTGAATAGGGCTTA-GGCCCAG
1 TTGT-AATAGGGC-TACGGCCCAG
81480309 TAAAGCTTGA
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
61 41 0.57
62 29 0.40
63 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (61 bp):
TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTAATA
Found at i:81485549 original size:41 final size:41
Alignment explanation
Indices: 81485504--81485621 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
81485494 TGAAAGATAA
81485504 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
81485545 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81485575 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81485616 ATGTAG
1 ATGTAG
81485622 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:81485560 original size:71 final size:71
Alignment explanation
Indices: 81485472--81485635 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81485462 GAGATGTATC
81485472 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81485537 AGGACA
66 AGGACA
81485543 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81485608 AGGACA
66 AGGACA
81485614 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81485636 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81493087 original size:41 final size:41
Alignment explanation
Indices: 81493042--81493159 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
81493032 TGAAAGATAA
81493042 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
81493083 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81493113 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
81493154 ATGTAG
1 ATGTAG
81493160 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:81493098 original size:71 final size:71
Alignment explanation
Indices: 81493010--81493173 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
81493000 GAGATGTATC
81493010 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81493075 AGGACA
66 AGGACA
81493081 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
81493146 AGGACA
66 AGGACA
81493152 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
81493174 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:81495386 original size:19 final size:19
Alignment explanation
Indices: 81495362--81495418 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
81495352 AATCATATGA
* *
81495362 GACTGTTTTATTATGGGCC
1 GACTGTATTAATATGGGCC
*
81495381 GACTGTATTAAAATGGGCCC
1 GACTGTATTAATATGGG-CC
* *
81495401 AACTGTGTTAATATGGGC
1 GACTGTATTAATATGGGC
81495419 AAGACCCAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (19 bp):
GACTGTATTAATATGGGCC
Found at i:81495548 original size:28 final size:28
Alignment explanation
Indices: 81495447--81495560 Score: 81
Period size: 28 Copynumber: 3.9 Consensus size: 28
81495437 ACTTGTAATA
* * *
81495447 GGGCTACGGCCCAGACTGATACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
* *
81495475 GGGCT-AGGCCCAGTATGCTCTGATATTG-TAAT
1 GGGCTAAGGCCCAG-A---T-TAATACTGAT-AT
*
81495507 AGGGCTATGGCCCAGATTAATACTGATAT
1 -GGGCTAAGGCCCAGATTAATACTGATAT
*
81495536 GGGCTAAGGCCCAG-TTAACACTGAT
1 GGGCTAAGGCCCAGATTAATACTGAT
81495561 TTCTGAATAG
Statistics
Matches: 69, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
27 17 0.25
28 19 0.28
29 8 0.12
30 2 0.03
31 1 0.01
32 9 0.13
33 6 0.09
34 7 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATACTGATAT
Found at i:81495581 original size:62 final size:61
Alignment explanation
Indices: 81495439--81495583 Score: 179
Period size: 61 Copynumber: 2.4 Consensus size: 61
81495429 ATATCTCGAC
* * *
81495439 TTGTAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATA
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
* *
81495500 TTGTAATAGGGCTATGGCCCAGATTAATACTGATATGGGCTAAGGCCCAGT-TAACACTGAT-
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTGATA
*
81495561 TTCTGAATAGGGCTTA-GGCCCAG
1 TTGT-AATAGGGC-TACGGCCCAG
81495584 TAAAGCTTGA
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
61 42 0.57
62 30 0.41
63 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (61 bp):
TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
Found at i:81498415 original size:40 final size:40
Alignment explanation
Indices: 81498370--81498536 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
81498360 CGGAATATAA
81498370 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
81498410 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
81498450 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
81498490 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
81498529 CCGGATAT
1 CCGGATAT
81498537 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81506380 original size:40 final size:40
Alignment explanation
Indices: 81506335--81506501 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
81506325 CGGAATATAA
81506335 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
81506375 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
81506415 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
81506455 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
81506494 CCGGATAT
1 CCGGATAT
81506502 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81517290 original size:39 final size:40
Alignment explanation
Indices: 81517247--81517412 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
81517237 CGGAATATAA
81517247 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTC-TAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
81517286 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
81517326 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
81517366 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
81517405 CCGGATAT
1 CCGGATAT
81517413 CATTCAATTT
Statistics
Matches: 106, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
38 1 0.01
39 43 0.41
40 62 0.58
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81524864 original size:27 final size:27
Alignment explanation
Indices: 81524821--81524900 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
81524811 AGAATTAATG
*
81524821 AAATA-CCCTGTAAGGTAGAAATACCA
1 AAATACCCCTGTAGGGTAGAAATACCA
* *
81524847 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAAATACCA
* *
81524874 AGATACCCTTGTAGGGTA-AAATTACCA
1 AAATACCCCTGTAGGGTAGAAA-TACCA
81524901 TCTTGCCCCT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.16
27 38 0.84
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.23
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAAATACCA
Found at i:81525643 original size:2 final size:2
Alignment explanation
Indices: 81525636--81525663 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
81525626 GCTTCGCCAC
81525636 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81525664 GTTCTGGTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81535593 original size:47 final size:48
Alignment explanation
Indices: 81535395--81535753 Score: 266
Period size: 47 Copynumber: 7.6 Consensus size: 48
81535385 TTGCCAATGC
* * * *
81535395 CATGTCCCAGACATAGTCTTACACTGGCTATCTTCATCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTACCATCATTGAGGCCGATG
* * * * *
81535443 CCATGTCCCAGACATGGTCTTACACTAGCTCTCGCGT-ATAG-GTGCTGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCT-AC-CATCATTGAG-GCCGATG
* * * * *
81535493 CATGTCCCAGACAT-GTATTACACTAG-TACGAAGC-TT-A-TCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTAC-CATCATTGAGGCCGATG
*
81535537 CATGTCCCAGACA-CGTCTTACACTGGCTACCATCATTGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTACCATCATTGAGGCCGATG
* *
81535584 CATGTCCCAGACA-CGTCTTACACTGGC-ACTCATC-TCT-ACGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTAC-CATCAT-TGAGGCCGATG
* * * * *
81535630 CCATGTCCCAGACATGGTCTTACACTGGCTATCGT-AATGTGGCTGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTACCATCATTGAGGCCGATG
* * * *
81535678 CATGTCCCAGACA-GGTCTTACACTAGC--CC-TCGTCTCAATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTACCATCAT-T-GAGGCCGATG
81535724 CCATGTCCCAGACATGGTCTTACACTGGCT
1 -CATGTCCCAGACATGGTCTTACACTGGCT
81535754 CTCACATAAC
Statistics
Matches: 250, Mismatches: 37, Indels: 46
0.75 0.11 0.14
Matches are distributed among these distances:
43 1 0.00
44 31 0.12
45 6 0.02
46 34 0.14
47 79 0.32
48 45 0.18
49 43 0.17
50 9 0.04
51 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTGGCTACCATCATTGAGGCCGATG
Found at i:81535678 original size:141 final size:139
Alignment explanation
Indices: 81535395--81535757 Score: 373
Period size: 141 Copynumber: 2.6 Consensus size: 139
81535385 TTGCCAATGC
* *
81535395 CATGTCCCAGACATAGTCTTACACTGGCTATCTTCATCGAGGCCGATGCCATGTCCCAGACATGG
1 CATGTCCCAGACA-AGTCTTACACTGGCTA-CCTCATTGAGGCCGATGCCATGTCCCAGACATGG
* * *
81535460 TCTTACACTAGCTCTC-GCGTATAGGTGCTGATGCATGTCCCAGACATGTATTACACTAGTACGA
64 TCTTACACTGGCTCTCAGCGTATA-GCGCCGATGCATGTCCCAGACATGTATTACACTAGTACGA
*
81535524 AGCTTATCCGATG
128 AGC-TAGCCGATG
* *
81535537 CATGTCCCAGACACGTCTTACACTGGCTACCATCATTGAGGCCGATG-CATGTCCCAGACA-CGT
1 CATGTCCCAGACAAGTCTTACACTGGCTACC-TCATTGAGGCCGATGCCATGTCCCAGACATGGT
* * * * *
81535600 CTTACACTGGCACTCATC-TCTA-CGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATC
65 CTTACACTGGCTCTCAGCGTATAGCGCCGATG-CATGTCCCAGACAT-GTATTACACTAG-TA-C
* *
81535663 GTAATG-TGGCTGATG
126 G-AA-GCTAGCCGATG
* * * * *
81535678 CATGTCCCAGACAGGTCTTACACTAGC--CCTCGTCTCAATGCCGATGCCATGTCCCAGACATGG
1 CATGTCCCAGACAAGTCTTACACTGGCTACCTCAT-T-GAGGCCGATGCCATGTCCCAGACATGG
81535741 TCTTACACTGGCTCTCA
64 TCTTACACTGGCTCTCA
81535758 CATAACCAAA
Statistics
Matches: 187, Mismatches: 22, Indels: 24
0.80 0.09 0.10
Matches are distributed among these distances:
137 6 0.03
138 17 0.09
139 31 0.17
140 25 0.13
141 75 0.40
142 32 0.17
143 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.26
Consensus pattern (139 bp):
CATGTCCCAGACAAGTCTTACACTGGCTACCTCATTGAGGCCGATGCCATGTCCCAGACATGGTC
TTACACTGGCTCTCAGCGTATAGCGCCGATGCATGTCCCAGACATGTATTACACTAGTACGAAGC
TAGCCGATG
Found at i:81535684 original size:94 final size:93
Alignment explanation
Indices: 81535395--81535753 Score: 368
Period size: 94 Copynumber: 3.8 Consensus size: 93
81535385 TTGCCAATGC
* * *
81535395 CATGTCCCAGACATAGTCTTACACTGGCTA-TCTTCATCGAGGCCGATGCCATGTCCCAGACATG
1 CATGTCCCAGACA-AGTCTTACACTAGC-ACTCATC-TCTA-GCCGATGCCATGTCCCAGACATG
* * *
81535459 GTCTTACACTAGCTCTCGCGTATAGGT-GCTGATG
62 GTCTTACACTGGCTAT--CGTA-ATGTGGCTGATG
* * * ** * * *
81535493 CATGTCCCAGACATGTATTACACTAGTACGAAGCT-TATCCGATG-CATGTCCCAGACA-CGTCT
1 CATGTCCCAGACAAGTCTTACACTAGCACTCATCTCTAGCCGATGCCATGTCCCAGACATGGTCT
* * * * *
81535555 TACACTGGCTACCATCATTGAGGCCGATG
66 TACACTGGCTATCGT-AATGTGGCTGATG
* *
81535584 CATGTCCCAGACACGTCTTACACTGGCACTCATCTCTACGCCGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACAAGTCTTACACTAGCACTCATCTCTA-GCCGATGCCATGTCCCAGACATGGTC
81535649 TTACACTGGCTATCGTAATGTGGCTGATG
65 TTACACTGGCTATCGTAATGTGGCTGATG
* * * *
81535678 CATGTCCCAGACAGGTCTTACACTAGCCCTCGTCTCAATGCCGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACAAGTCTTACACTAGCACTCATCTCTA-GCCGATGCCATGTCCCAGACATGGTC
81535743 TTACACTGGCT
65 TTACACTGGCT
81535754 CTCACATAAC
Statistics
Matches: 215, Mismatches: 39, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
90 3 0.01
91 35 0.16
92 15 0.07
93 19 0.09
94 99 0.46
95 18 0.08
96 2 0.01
97 11 0.05
98 13 0.06
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (93 bp):
CATGTCCCAGACAAGTCTTACACTAGCACTCATCTCTAGCCGATGCCATGTCCCAGACATGGTCT
TACACTGGCTATCGTAATGTGGCTGATG
Found at i:81541009 original size:42 final size:42
Alignment explanation
Indices: 81540855--81541010 Score: 122
Period size: 42 Copynumber: 3.7 Consensus size: 42
81540845 TGAGTTTTCG
* * *
81540855 TGTAAGACCATGTCTGAGACGTTGGCATCGATTTATGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATAT-TGA-TTACA
* * * * * *
81540899 TGTAAGACTATGTTTGGGACATCGGCATCG-TATTTGATCT-CG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATA-TTGAT-TACA
* *
81540941 TGTAATACC-CTGTCTAGGACAG-TGGCATCGATATTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTGATTACA
*
81540983 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
81541011 TGTACAAGCT
Statistics
Matches: 86, Mismatches: 18, Indels: 18
0.70 0.15 0.15
Matches are distributed among these distances:
41 2 0.02
42 50 0.58
43 8 0.09
44 26 0.30
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTGATTACA
Found at i:81554162 original size:16 final size:17
Alignment explanation
Indices: 81554131--81554163 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
81554121 TTCATAAGTA
81554131 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
81554148 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
81554164 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:81554945 original size:46 final size:46
Alignment explanation
Indices: 81554459--81554947 Score: 827
Period size: 46 Copynumber: 10.6 Consensus size: 46
81554449 TGTCATAGTG
* * * *
81554459 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTGCCATGGTA
* *
81554505 TCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
81554551 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
* * *
81554597 TCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGTTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
*
81554643 TCTTTGAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
* *
81554689 TCTTTCAACCATGGTCTTACACATTTTATATCTTGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
*
81554735 TCTTTCAACCATGATCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
* *
81554781 TCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
81554827 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
81554873 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
81554919 TCTTTCAACCATGGTCTTACACATTTCAT
1 TCTTTCAACCATGGTCTTACACATTTCAT
81554948 TTCAGAAAGC
Statistics
Matches: 416, Mismatches: 26, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
45 3 0.01
46 413 0.99
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.41
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
Found at i:81556667 original size:46 final size:47
Alignment explanation
Indices: 81556559--81556682 Score: 135
Period size: 46 Copynumber: 2.6 Consensus size: 47
81556549 CATGTCTTTG
** * *
81556559 ACATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTA
1 ACATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTA
*
81556609 ACATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATC-A
1 ACATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTA
* *
81556654 GATATGGACTTACATGGCTCATTTCTGTC
1 -ACATGGACTTACATGGCTCATTCCTGTC
81556683 ATGTCCTGTC
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
45 1 0.02
46 32 0.49
50 32 0.49
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (47 bp):
ACATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTA
Found at i:81559867 original size:29 final size:28
Alignment explanation
Indices: 81559834--81559936 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
81559824 TACTCAATCA
81559834 CGCACACTTAGTGCCATATGATTCAAGC-
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
81559862 CTGCACACATAGTGCCATATAGTCCAAACT
1 C-GCACACTTAGTGCCATATA-TTCAAGCT
* *
81559892 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
81559921 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
81559937 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
28 3 0.05
29 57 0.93
30 1 0.02
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:81562021 original size:450 final size:452
Alignment explanation
Indices: 81561177--81562025 Score: 1657
Period size: 450 Copynumber: 1.9 Consensus size: 452
81561167 GGGGTTTCAC
81561177 TCACACACACGTTTTTTTTTCTTTCTTTATTACCCATGCTTATTTGTTTATTGTTTCCCCCTAAT
1 TCACACACACGTTTTTTTTTCTTTCTTTATTACCCATGCTTATTTGTTTATTGTTTCCCCCTAAT
81561242 GCACCAACAAAACATGTTTCATGACATGTTTAGCCCATACTCCCTTGTCATGGCCGGCCATCACT
66 GCACCAACAAAACATGTTTCATGACATGTTTAGCCCATACTCCCTTGTCATGGCCGGCCATCACT
81561307 TGTAAAAAGGGGGTATTTGACATGCAAGGCCATTGTTTTGCATGCATGCTTTAATTAGTCATCAT
131 TGTAAAAAGGGGGTATTTGACATGCAAGGCCATTGTTTTGCATGCATGCTTTAATTAGTCATCAT
81561372 ACATTTCCCCATCATACTTTCAAAGTTTTCTACTAGGTCATTTCTAGTGAAATTCACATTTATAA
196 ACATTTCCCCATCATACTTTCAAAGTTTTCTACTAGGTCATTTCTAGTGAAATTCACATTTATAA
81561437 CTCTAAATTAAAGCATCAAAATGTCACACATGAGTTAACACATATTATAGGCATCAAAATAAATA
261 CTCTAAATTAAAGCATCAAAATGTCACACATGAGTTAACACATATTATAGGCATCAAAATAAATA
81561502 TCAAATTATTTTTATGCCTCGGTTTTGTGGTCCCGAAACCACATTCCGACTAGGGTCGTTTTAAA
326 TCAAATTATTTTTATGCCTCGGTTTTGTGGTCCCGAAACCACATTCCGACTAGGGTCGTTTTAAA
81561567 GCTGTCACAACTCTCCCCCACTTAAGAAATTTTCGTCCCCGAAAATCTTACCGGTAAATAGG
391 GCTGTCACAACTCTCCCCCACTTAAGAAATTTTCGTCCCCGAAAATCTTACCGGTAAATAGG
81561629 TCACACACACG-TTTTTTTTCTTTCTTTATTACCCATGCTTATTTGTTTATTGTTTCCCCCTAAT
1 TCACACACACGTTTTTTTTTCTTTCTTTATTACCCATGCTTATTTGTTTATTGTTTCCCCCTAAT
81561693 GCACCAACAAAACATGTTTCATGACATGTTTAGCCCATACTCCCTTGTCATGGCCGGCCATCACT
66 GCACCAACAAAACATGTTTCATGACATGTTTAGCCCATACTCCCTTGTCATGGCCGGCCATCACT
*
81561758 TGTAAAAA-GGGGTATTTGACATGCAAGGCCATTTTTTTGCATGCATGCTTTAATTAGTCATCAT
131 TGTAAAAAGGGGGTATTTGACATGCAAGGCCATTGTTTTGCATGCATGCTTTAATTAGTCATCAT
*
81561822 ACATTTCCCCATCATACTTTCAAAGTTTTCTACTAGGTCCTTTCTAGTGAAATTCACATTTATAA
196 ACATTTCCCCATCATACTTTCAAAGTTTTCTACTAGGTCATTTCTAGTGAAATTCACATTTATAA
81561887 CTCTAAATTAAAGCATCAAAATGTCACACATGAGTTAACACATATTATAGGCATCAAAATAAATA
261 CTCTAAATTAAAGCATCAAAATGTCACACATGAGTTAACACATATTATAGGCATCAAAATAAATA
*
81561952 TCAAATTATTTTTATGCCTCGGTTTTGTGGTCTCGAAACCACATTCCGACTAGGGTCGTTTTAAA
326 TCAAATTATTTTTATGCCTCGGTTTTGTGGTCCCGAAACCACATTCCGACTAGGGTCGTTTTAAA
81562017 GCTGTCACA
391 GCTGTCACA
81562026 GAGCTTCTCG
Statistics
Matches: 394, Mismatches: 3, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
450 257 0.65
451 126 0.32
452 11 0.03
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (452 bp):
TCACACACACGTTTTTTTTTCTTTCTTTATTACCCATGCTTATTTGTTTATTGTTTCCCCCTAAT
GCACCAACAAAACATGTTTCATGACATGTTTAGCCCATACTCCCTTGTCATGGCCGGCCATCACT
TGTAAAAAGGGGGTATTTGACATGCAAGGCCATTGTTTTGCATGCATGCTTTAATTAGTCATCAT
ACATTTCCCCATCATACTTTCAAAGTTTTCTACTAGGTCATTTCTAGTGAAATTCACATTTATAA
CTCTAAATTAAAGCATCAAAATGTCACACATGAGTTAACACATATTATAGGCATCAAAATAAATA
TCAAATTATTTTTATGCCTCGGTTTTGTGGTCCCGAAACCACATTCCGACTAGGGTCGTTTTAAA
GCTGTCACAACTCTCCCCCACTTAAGAAATTTTCGTCCCCGAAAATCTTACCGGTAAATAGG
Found at i:81568414 original size:46 final size:46
Alignment explanation
Indices: 81568321--81568477 Score: 208
Period size: 46 Copynumber: 3.3 Consensus size: 46
81568311 TGCCATATTG
* *
81568321 TCTTTCAACTATGGTCTTACTCGTTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTA----TTC-TTTTCATGTCAAGTTGCCATGGTA
* *
81568371 TCTTGCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCTTTTCATGTCAAGTTGCCATGGTA
* *
81568417 TCTTTCAACCATGGTCTTATTCATTTCATATCAAGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCTTTTCATGTCAAGTTGCCATGGTA
81568463 TCTTTCAACCATGGT
1 TCTTTCAACCATGGT
81568478 GTTACACATT
Statistics
Matches: 99, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
45 5 0.05
46 77 0.78
50 17 0.17
ACGTcount: A:0.19, C:0.23, G:0.15, T:0.43
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTATTCTTTTCATGTCAAGTTGCCATGGTA
Found at i:81568488 original size:46 final size:46
Alignment explanation
Indices: 81568359--81568495 Score: 211
Period size: 46 Copynumber: 3.0 Consensus size: 46
81568349 TTTCTGTCAT
* * * *
81568359 GTTGCCATGGTATCTTGCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAA
81568405 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAA
* **
81568451 GTTGCCATGGTATCTTTCAACCATGGTGTTACACATTTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCA
81568496 GAGAGCACAC
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 84 1.00
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAA
Found at i:81570513 original size:21 final size:22
Alignment explanation
Indices: 81570489--81570538 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 22
81570479 AAATCCCAAT
81570489 TTTTCCCTTT-TTCCTTCTTTC
1 TTTTCCCTTTCTTCCTTCTTTC
*
81570510 TTTT--TTTTCCTTCCTTCTTTC
1 TTTTCCCTTT-CTTCCTTCTTTC
*
81570531 TTTCCCCT
1 TTTTCCCT
81570539 GCTCTCTGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 6
0.71 0.10 0.19
Matches are distributed among these distances:
19 3 0.14
21 18 0.82
23 1 0.05
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (22 bp):
TTTTCCCTTTCTTCCTTCTTTC
Found at i:81570518 original size:17 final size:17
Alignment explanation
Indices: 81570496--81570529 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
81570486 AATTTTTCCC
*
81570496 TTTTTCCTTCTTTCTTT
1 TTTTTCCTTCCTTCTTT
81570513 TTTTTCCTTCCTTCTTT
1 TTTTTCCTTCCTTCTTT
81570530 CTTTCCCCTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTCCTTCCTTCTTT
Found at i:81570595 original size:16 final size:17
Alignment explanation
Indices: 81570564--81570603 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
81570554 TCATCCTTTC
*
81570564 TTTCTTTTTCTATTCTT
1 TTTCTTTTTATATTCTT
81570581 TTTCTTTTTAT-TTCTT
1 TTTCTTTTTATATTCTT
*
81570597 TTACTTT
1 TTTCTTT
81570604 CTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTCTTTTTATATTCTT
Done.