Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 264 of 410
Found at i:81570598 original size:10 final size:10
Alignment explanation
Indices: 81570560--81570597 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
81570550 CGTTTCATCC
81570560 TTTCTTTCTT
1 TTTCTTTCTT
81570570 TTTCTATTCTT
1 TTTCT-TTCTT
81570581 TTTCTTT-TT
1 TTTCTTTCTT
81570590 ATTTCTTT
1 -TTTCTTT
81570598 TACTTTCTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 2 0.08
10 14 0.54
11 10 0.38
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTCTTTCTT
Found at i:81570614 original size:2 final size:2
Alignment explanation
Indices: 81570607--81570634 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
81570597 TTACTTTCTT
81570607 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81570635 ATAACTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81574166 original size:46 final size:46
Alignment explanation
Indices: 81574033--81574170 Score: 213
Period size: 46 Copynumber: 3.0 Consensus size: 46
81574023 TTTCTGTCAT
* * * * * *
81574033 GTTGCCATGGGATCTTGCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
*
81574079 GTTGCCATGGTATCTTTCAACCATGGTCTTATGCATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
81574125 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
81574171 AGAGCACACT
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 85 1.00
ACGTcount: A:0.21, C:0.22, G:0.17, T:0.39
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
Found at i:81576350 original size:2 final size:2
Alignment explanation
Indices: 81576343--81576378 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
81576333 TTTACTTTCT
81576343 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81576379 ATAACTTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81580737 original size:44 final size:43
Alignment explanation
Indices: 81580661--81580822 Score: 120
Period size: 42 Copynumber: 3.8 Consensus size: 43
81580651 ACATAAGATC
* *
81580661 CGATATGTGTTTTCGTGTAAGACCACGTCTGGGACA-CTGGCAT
1 CGATTTGTGTTTACGTGTAAGACCACGTCTGGGACATC-GGCAT
**
81580704 CGATTTGTGGTTTACGTGTAAGACCATTTCTGGGACATCGGCAT
1 CGATTTGT-GTTTACGTGTAAGACCACGTCTGGGACATCGGCAT
* * * *
81580748 CGTATTTG-ATCT-CGTGTAAGACC-CTATCTGGGACAGT-AGCAT
1 CG-ATTTGTGTTTACGTGTAAGACCAC-GTCTGGGACA-TCGGCAT
* * * * *
81580790 TGATAT-TGATTACATGTAAGACCACGTTTGGGA
1 CGATTTGTGTTTACGTGTAAGACCACGTCTGGGA
81580823 TGTTGGCATT
Statistics
Matches: 94, Mismatches: 17, Indels: 17
0.73 0.13 0.13
Matches are distributed among these distances:
41 4 0.04
42 41 0.44
43 11 0.12
44 32 0.34
45 6 0.06
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (43 bp):
CGATTTGTGTTTACGTGTAAGACCACGTCTGGGACATCGGCAT
Found at i:81582948 original size:16 final size:16
Alignment explanation
Indices: 81582898--81582949 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
81582888 GGCAAATCCC
* *
81582898 GAAATGCCAAAAAGCC
1 GAAATGCCGAAAAGCT
*
81582914 AAAATGCCGAAAAGCT
1 GAAATGCCGAAAAGCT
*
81582930 GAAATGCCGAAAAGTT
1 GAAATGCCGAAAAGCT
81582946 GAAA
1 GAAA
81582950 GTTTAGCTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.50, C:0.17, G:0.21, T:0.12
Consensus pattern (16 bp):
GAAATGCCGAAAAGCT
Found at i:81583202 original size:29 final size:29
Alignment explanation
Indices: 81583160--81583284 Score: 153
Period size: 29 Copynumber: 4.3 Consensus size: 29
81583150 GAAAGCATGA
81583160 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
81583189 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * * * **
81583218 ATACGAATGTGATTTCGGCTTAATGCGTT
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* **
81583247 ATATGAATGAGA-TTGGGCCTAGCGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
81583275 ATATGCATGT
1 ATATGAATGT
81583285 TTGTAGACTT
Statistics
Matches: 79, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
28 17 0.22
29 62 0.78
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:81586823 original size:49 final size:50
Alignment explanation
Indices: 81586733--81586978 Score: 235
Period size: 49 Copynumber: 4.9 Consensus size: 50
81586723 ATCTATTGTA
* * *
81586733 AGGTCACGTGTGTAGTACTAAGTGCAGGCAACTACATGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
* * * * *
81586783 -GGTCGCATGTGTAGTACTAAGTCCAGGCTACTATACGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAA-TT
* * * * * * ** **
81586833 CGATCACGTGTGTAGTGCTAAGTGTAGGCTACTACGTGTATTAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
* * * *
81586883 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTATCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
* * * *
81586933 -GGTCGCATGTGTAATACTAAGTGCAGGCTACTAGACGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATA
81586979 GCCTTGTCTA
Statistics
Matches: 157, Mismatches: 37, Indels: 5
0.79 0.19 0.03
Matches are distributed among these distances:
49 78 0.50
50 46 0.29
51 33 0.21
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
Found at i:81592281 original size:26 final size:27
Alignment explanation
Indices: 81592248--81592300 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
81592238 TGTCATGTGA
* *
81592248 AATTGAATG-GAAATTATTGTTACATG
1 AATTGAATGTGAAATTACTATTACATG
*
81592274 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGTGAAATTACTATTACATG
81592301 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.40
Consensus pattern (27 bp):
AATTGAATGTGAAATTACTATTACATG
Found at i:81592680 original size:50 final size:51
Alignment explanation
Indices: 81592546--81592689 Score: 173
Period size: 50 Copynumber: 2.8 Consensus size: 51
81592536 ATCTATTGTA
* *
81592546 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATAACTT
* * ** * **
81592597 CGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATAACTT
* * *
81592647 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTAGGCGTACCA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCATACCA
81592690 AATAGCCTTG
Statistics
Matches: 78, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
50 39 0.50
51 39 0.50
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (51 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATAACTT
Found at i:81596090 original size:17 final size:17
Alignment explanation
Indices: 81596068--81596103 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
81596058 GATCACTCTG
81596068 TCCCTCACTTCTTCTAA
1 TCCCTCACTTCTTCTAA
81596085 TCCCTCACTTCTTCTAA
1 TCCCTCACTTCTTCTAA
81596102 TC
1 TC
81596104 AGTTTTGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.17, C:0.42, G:0.00, T:0.42
Consensus pattern (17 bp):
TCCCTCACTTCTTCTAA
Found at i:81596390 original size:11 final size:11
Alignment explanation
Indices: 81596374--81596400 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
81596364 TAAGTATATG
81596374 TGAGTAATCAT
1 TGAGTAATCAT
81596385 TGAGTAATCAT
1 TGAGTAATCAT
81596396 TGAGT
1 TGAGT
81596401 GCACGAACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.37
Consensus pattern (11 bp):
TGAGTAATCAT
Found at i:81604058 original size:55 final size:53
Alignment explanation
Indices: 81603938--81604117 Score: 161
Period size: 55 Copynumber: 3.3 Consensus size: 53
81603928 ATTGCCACGT
* * * * *
81603938 CTTGACATGGTCTTAC-GTGGTATCATTGCCTTAT-GAACTCACCAACGCCATAC
1 CTTGACATGGTCTTACATTGG-A-CCTTGCCTTATAGAACTCATCAATGCCATGC
* * * *
81603991 CTTGGCAAGGTCTTACATTGGACCTTTACCTTATAGTAACTCATCAATGCCATGT
1 CTTGACATGGTCTTACATTGGACC-TTGCCTTATAG-AACTCATCAATGCCATGC
* *
81604046 CTTGACATGGTCTTACA-T-GATTTCCTTGCCTTGTAGAACTTATCAATGCCATGC
1 CTTGACATGGTCTTACATTGGA---CCTTGCCTTATAGAACTCATCAATGCCATGC
*
81604100 CTTGGCATGGTCTTACAT
1 CTTGACATGGTCTTACAT
81604118 GATATCCTTA
Statistics
Matches: 103, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
52 1 0.01
53 25 0.24
54 37 0.36
55 38 0.37
56 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (53 bp):
CTTGACATGGTCTTACATTGGACCTTGCCTTATAGAACTCATCAATGCCATGC
Found at i:81604098 original size:54 final size:54
Alignment explanation
Indices: 81603919--81604126 Score: 188
Period size: 54 Copynumber: 3.9 Consensus size: 54
81603909 TTTCCTTTTT
* * * * * * *
81603919 GAACTTACCATTGCCACGTCTTGACATGGTCTTACGTGGTATCATTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * * * * *
81603972 GAACTCACCAACGCCATACCTTGGCAAGGTCTTACATTG-GA-CCTTTACCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACA-TGATATCC-TTGCCTTATA
* * * *
81604026 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * *
81604081 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
81604127 ATCTTACCAA
Statistics
Matches: 123, Mismatches: 26, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
52 1 0.01
53 36 0.29
54 46 0.37
55 38 0.31
56 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:81616544 original size:27 final size:27
Alignment explanation
Indices: 81616514--81616670 Score: 190
Period size: 27 Copynumber: 5.8 Consensus size: 27
81616504 ATTACCAAAG
* *
81616514 TACCCCCGATTTACATAATTACCT-TTT
1 TACCCTCGATTTACAAAATTA-CTATTT
*
81616541 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
81616568 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
81616595 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
***
81616622 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTATTT
* *
81616649 TACCCTTGGTTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
81616671 CAAAATACCC
Statistics
Matches: 115, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
26 2 0.02
27 113 0.98
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:81616559 original size:54 final size:54
Alignment explanation
Indices: 81616501--81616682 Score: 177
Period size: 54 Copynumber: 3.4 Consensus size: 54
81616491 CTCAACTTGT
* * * *
81616501 AAAATTACCAAAGTACCCCCGATTTACATAATTACCT-TTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTACAAAATTA-CTATTTTACCCTTGATTTAC
**** * *
81616555 AAAATTACTGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTAC
1 AAAATTACCAAATTACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTAC
* * ** *** *
81616609 AGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAATTACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTAC
*
81616663 AAAATTACCAAAATACCCTC
1 AAAATTACCAAATTACCCTC
81616683 AATCAGTAAA
Statistics
Matches: 105, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
53 2 0.02
54 103 0.98
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.36
Consensus pattern (54 bp):
AAAATTACCAAATTACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTAC
Found at i:81616675 original size:27 final size:27
Alignment explanation
Indices: 81616622--81616954 Score: 199
Period size: 27 Copynumber: 12.3 Consensus size: 27
81616612 ATTACTATTT
* * * *
81616622 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
*
81616649 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
*** *
81616676 TACCC-TCAATCAGTAAAATTACCAAAA
1 TACCCTTGGTTTA-TAAAATTACCAAAA
* * * *
81616703 TACCC-TGGTCTGTAAAATTGCTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* *
81616729 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * * *
81616756 TACCCCTAGTTTGTAAAATTACCAACA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * * *
81616783 TACCAC-TGGTTTGTGAAATTATCGAAA
1 TACC-CTTGGTTTATAAAATTACCAAAA
* ** *
81616810 TACTCTTAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * * *
81616837 TACCCCTGATTTACAAAATTA-TAGAAA
1 TACCCTTGGTTTATAAAATTACCA-AAA
* * *
81616864 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAT-AAAATTACCA-AAA
* * **
81616893 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
81616920 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
*
81616947 CACCCTTG
1 TACCCTTG
81616955 TAGGGTGAAA
Statistics
Matches: 243, Mismatches: 55, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
26 22 0.09
27 193 0.79
28 8 0.03
29 20 0.08
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTTGGTTTATAAAATTACCAAAA
Found at i:81616680 original size:81 final size:81
Alignment explanation
Indices: 81616501--81616682 Score: 204
Period size: 81 Copynumber: 2.2 Consensus size: 81
81616491 CTCAACTTGT
* * * **
81616501 AAAATTACCAAAGTACCCCCGATTTACATAATTACCTTTTTACCCTCGATTTACAAAATTACTGT
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCTTTTTACCCTCGATTTACAAAATTACTAA
** *
81616566 TTTACCCTCGATTTAT
66 AATACCCTCGATTTAC
* * *** *
81616582 AGAATTACTATTTTACCCTTGATTTACAGAATTA-CTATTTTACCCTCGATTTACAAAATTACTA
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCT-TTTTACCCTCGATTTACAAAATTACTA
* *
81616646 AAATACCCTTGGTTTAC
65 AAATACCCTCGATTTAC
81616663 AAAATTACCAAAATACCCTC
1 AAAATTACCAAAATACCCTC
81616683 AATCAGTAAA
Statistics
Matches: 79, Mismatches: 21, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
80 2 0.03
81 77 0.97
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.36
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTACAGAATTACCTTTTTACCCTCGATTTACAAAATTACTAA
AATACCCTCGATTTAC
Found at i:81616747 original size:80 final size:80
Alignment explanation
Indices: 81616636--81616843 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 80
81616626 CTCGATTTAC
**
81616636 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCAATCAGTAAAATTACCA
1 AAAATT-CTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCT-AATCAGTAAAATTACCA
81616700 AAATACC-CTGGTCTGT
64 AAATACCACTGGTCTGT
* * **
81616716 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATT-CTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAATCAGTAAAATTACCAA
* *
81616781 CATACCACTGGTTTGT
65 AATACCACTGGTCTGT
* * * * **
81616797 GAAATTATCGAAATACTCTTAATTTGTAAAATTACCAAAATACCCCT
1 AAAATTCT-AAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCT
81616844 GATTTACAAA
Statistics
Matches: 109, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
80 59 0.54
81 50 0.46
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (80 bp):
AAAATTCTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAATCAGTAAAATTACCAAA
ATACCACTGGTCTGT
Found at i:81617015 original size:27 final size:27
Alignment explanation
Indices: 81616985--81617076 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
81616975 ACCCCTATTA
* *
81616985 GGTAAAAAGATCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
*
81617012 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
81617039 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
81617066 GGTAAAATGAC
1 GGTAAAATGAC
81617077 GAATATACCC
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:81617084 original size:27 final size:27
Alignment explanation
Indices: 81616948--81617086 Score: 97
Period size: 27 Copynumber: 5.1 Consensus size: 27
81616938 TTACCAAAAC
* * **
81616948 ACCCTTGTAGGGTGAAATGACTAAAAT
1 ACCCCTGTAGGGTAAAATGACCGAAAT
* * *
81616975 ACCCCTATTA-GGTAAAAAGATCGTAAA-
1 ACCCCT-GTAGGGTAAAATGACCG-AAAT
* *
81617002 GCCCCTGTAGGGTAAAGTGACCGTAAA-
1 ACCCCTGTAGGGTAAAATGACCG-AAAT
* * *
81617029 GCCCCTGTAGGGTAAAGTGACCGTAAT
1 ACCCCTGTAGGGTAAAATGACCGAAAT
*
81617056 ACCCCTGTATGGTAAAATGA-CGAATAT
1 ACCCCTGTAGGGTAAAATGACCGAA-AT
81617083 ACCC
1 ACCC
81617087 TTATGTTCCG
Statistics
Matches: 90, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
26 7 0.08
27 78 0.87
28 5 0.06
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (27 bp):
ACCCCTGTAGGGTAAAATGACCGAAAT
Found at i:81617926 original size:24 final size:24
Alignment explanation
Indices: 81617869--81617974 Score: 160
Period size: 24 Copynumber: 4.4 Consensus size: 24
81617859 AGGAAGTGCT
* *
81617869 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
81617893 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
81617918 AAAAGGGCTTTGCCCCAGTTTATC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
81617942 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
81617965 AAAAGAGGCT
1 AAAAG-GGCT
81617975 AGGCCTCCAG
Statistics
Matches: 77, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
23 9 0.12
24 46 0.60
25 22 0.29
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:81618216 original size:31 final size:31
Alignment explanation
Indices: 81618180--81618351 Score: 263
Period size: 31 Copynumber: 5.5 Consensus size: 31
81618170 CGTTTACAGT
*
81618180 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
81618211 AAAGGCTTCGGCCCAGAGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
81618242 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
81618273 TAAGGCTTCAGCCCAGTAATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
81618304 TAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
81618335 AAACGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
81618352 AACCGTTAAA
Statistics
Matches: 129, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 129 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:81618718 original size:17 final size:19
Alignment explanation
Indices: 81618680--81618718 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
81618670 TTTCTGGGAT
*
81618680 TATTTTATTTTATACACTA
1 TATTTTATTTTATACACAA
81618699 TATTTT-TTTTATA-ACAA
1 TATTTTATTTTATACACAA
81618716 TAT
1 TAT
81618719 AAATTAGACC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 7 0.37
19 6 0.32
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (19 bp):
TATTTTATTTTATACACAA
Found at i:81618719 original size:19 final size:19
Alignment explanation
Indices: 81618680--81618719 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
81618670 TTTCTGGGAT
*
81618680 TATTTTATTTTATACACTA
1 TATTTTATTTTATACAATA
81618699 TATTTT-TTTTATAACAATA
1 TATTTTATTTTAT-ACAATA
81618718 TA
1 TA
81618720 AATTAGACCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (19 bp):
TATTTTATTTTATACAATA
Found at i:81621146 original size:50 final size:49
Alignment explanation
Indices: 81621031--81621362 Score: 368
Period size: 50 Copynumber: 6.8 Consensus size: 49
81621021 GGTTATATAC
* * ** ** *
81621031 GAGCTAGTGTAAGACCATGTTTGTAACATGGCATCGGCATTG-TTATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATTATGA
* *
81621079 GAGCCAATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATGTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAT-TATGA
* * **
81621129 GAGCCAGTGTAGGACCATGTCTGGGACATGACATCAACACCGATGTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAT-TATGA
* * * *
81621179 GAGCTAGTGTAAGACCATGTCTGGGAACATGGCATCAGC-CTC-AATATGC
1 GAGCCAGTGTAAGACCATGTCTGGG-ACATGGCATCGGCAC-CGATTATGA
* * * ** *
81621228 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTG-TTATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATTATGA
81621276 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATCTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAT-TATGA
81621326 GAGCCAGTGTAAGACCATGTCAT-GGACATGGCATCGG
1 GAGCCAGTGTAAGACCATGTC-TGGGACATGGCATCGG
81621363 TATTTTTCCC
Statistics
Matches: 239, Mismatches: 36, Indels: 16
0.82 0.12 0.05
Matches are distributed among these distances:
48 86 0.36
49 28 0.12
50 112 0.47
51 13 0.05
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATTATGA
Found at i:81632879 original size:13 final size:13
Alignment explanation
Indices: 81632861--81632889 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
81632851 GGTTGTTTAT
81632861 TAAACTAATTAAC
1 TAAACTAATTAAC
81632874 TAAACTAATTAAC
1 TAAACTAATTAAC
81632887 TAA
1 TAA
81632890 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:81635867 original size:6 final size:6
Alignment explanation
Indices: 81635824--81635867 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
81635814 AATAAAATTG
* * *
81635824 AAATGA AAATAG AAATAA AAAGAA AAATAA AAAT-A AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
81635868 AAGATAAGAG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.14
Consensus pattern (6 bp):
AAATAA
Found at i:81645958 original size:30 final size:30
Alignment explanation
Indices: 81645899--81645982 Score: 161
Period size: 30 Copynumber: 2.8 Consensus size: 30
81645889 CTGAATCTAA
81645899 ATCACCATACATCCAAGATACAT-TGCATT
1 ATCACCATACATCCAAGATACATATGCATT
81645928 ATCACCATACATCCAAGATACATATGCATT
1 ATCACCATACATCCAAGATACATATGCATT
81645958 ATCACCATACATCCAAGATACATAT
1 ATCACCATACATCCAAGATACATAT
81645983 ACAATGCAAT
Statistics
Matches: 54, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
29 23 0.43
30 31 0.57
ACGTcount: A:0.40, C:0.27, G:0.06, T:0.26
Consensus pattern (30 bp):
ATCACCATACATCCAAGATACATATGCATT
Found at i:81652228 original size:14 final size:14
Alignment explanation
Indices: 81652209--81652241 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
81652199 CACTTAAAAA
*
81652209 TATTTTATTTTTTT
1 TATTTTATTATTTT
81652223 TATTTTATTATTTT
1 TATTTTATTATTTT
81652237 TATTT
1 TATTT
81652242 AATAATAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (14 bp):
TATTTTATTATTTT
Found at i:81654044 original size:17 final size:18
Alignment explanation
Indices: 81654017--81654050 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
81654007 TAATTATTTT
81654017 ATTAATAATATTAATGAA
1 ATTAATAATATTAATGAA
81654035 ATTAAT-ATATTAATGA
1 ATTAATAATATTAATGA
81654051 TTACTTACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (18 bp):
ATTAATAATATTAATGAA
Found at i:81658257 original size:96 final size:101
Alignment explanation
Indices: 81658132--81658374 Score: 275
Period size: 96 Copynumber: 2.4 Consensus size: 101
81658122 AGTTTTTAAA
* * ** *
81658132 TTTTAGGG-TTTTAAGGAAAAAAATTAAATAAATTAGGGTTTAGTATTTGTTAATTAAATTAATT
1 TTTTAGGGTTTTTAAGG-AAAAAATCAAATAAATTAGGGTTTAGGATTACTTAAGTAAATTAATT
*
81658196 ACT-AATTTT-AAAAAATTAGATT-A-T-GGTTTAGTG
65 A-TAAATTTTAAAAAAATTAGATTAATTAGGTTTAGGG
* * *
81658229 -TTTATGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTA
1 TTTTAGGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGATTACTTAAGTAAATTAATTA
81658293 TAAATTTTAAAAAAATTAGATTAAGATTTTAGGGTTTAGGG
66 TAAATTTTAAAAAAATTAGATT-A-A--TTA-GGTTTAGGG
* *
81658334 TTTTAGGGTATTTAAGAAAAAAATCAAATAAATTAGGGTTT
1 TTTTAGGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTT
81658375 GGGGTTTAGG
Statistics
Matches: 122, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
95 1 0.01
96 53 0.43
97 21 0.17
100 1 0.01
103 1 0.01
105 8 0.07
106 37 0.30
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.40
Consensus pattern (101 bp):
TTTTAGGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGATTACTTAAGTAAATTAATTA
TAAATTTTAAAAAAATTAGATTAATTAGGTTTAGGG
Found at i:81658948 original size:126 final size:126
Alignment explanation
Indices: 81658425--81658944 Score: 790
Period size: 126 Copynumber: 4.1 Consensus size: 126
81658415 AAAAGCTTCT
* * * *
81658425 ACGTGGACGTTCTTTTGCTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAAAAGACGTGTCTGCACAA
*
81658490 ATAGTGTCAAAAACGCTTCAATCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * **
81658551 ACGTGGACACTCTTTTGCTACAGTAGTATCTGAAAAAATAACTTTGAAAAGACGTGTCTGTGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAAAAGACGTGTCTGCACAA
* *
81658616 ATAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTTCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* *
81658677 ACGTAGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCACAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAAAAGACGTGTCTGCACAA
* * * *
81658742 ATAGTGGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAGAAACTCCC
66 ATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * * * *
81658803 ACGTAGATGCTCTTTTACTACAATGGTCTCTGAAAAAATAATTTTGAAAAGACGTGTCTGCATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAAAAGACGTGTCTGCACAA
* *
81658868 ATAGTGTCAAAAACGCTTCAATCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
81658929 ACGTGGACGCTCTTTT
1 ACGTGGACGCTCTTTT
81658945 ACTATAGTGG
Statistics
Matches: 359, Mismatches: 33, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
125 2 0.01
126 355 0.99
127 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.27
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAAAAGACGTGTCTGCACAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:81662309 original size:115 final size:116
Alignment explanation
Indices: 81661983--81662361 Score: 652
Period size: 116 Copynumber: 3.3 Consensus size: 116
81661973 TTTATATTTT
* *
81661983 ATTACATGAAATAATATAAAAATATTCAAAATATTGCTTTATTTAAAATAATTTTCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCCATTTTATTA
* *
81662048 AAAATATAAAAGTAAATTATAATTAATTTATTTAAAACAACCTTTTATATT
66 AAAATATAAAAGTAAATTATAATTAATTTATTTAAAACAACCTTTTATCTA
* *
81662099 ATCACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCCATTTTATTA
*
81662164 AAAATATAAAAGTAAATTATAATTATTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTATAATTAATTTATTTAAAACAACCTTTTATCTA
*
81662215 ATTACATGAAATAATATAAAAATATTC-AAATATTACCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCCATTTTATTA
* *
81662279 AAAATATAAAAGTAAAATATAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTATAATTAATTTATTTAAAACAACCTTTTATCTA
*
81662330 ATTACATGAAATAATATAAAAAGATTCAAAAT
1 ATTACATGAAATAATATAAAAATATTCAAAAT
81662362 GTTTGTACAA
Statistics
Matches: 249, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
115 110 0.44
116 139 0.56
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.40
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCCATTTTATTA
AAAATATAAAAGTAAATTATAATTAATTTATTTAAAACAACCTTTTATCTA
Found at i:81662775 original size:18 final size:18
Alignment explanation
Indices: 81662749--81662791 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
81662739 GACTAGAAAA
* *
81662749 AGGAAACATATAAGGGCT
1 AGGATACATAAAAGGGCT
81662767 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
81662785 AGGATAC
1 AGGATAC
81662792 GTACCTGGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.44, C:0.12, G:0.28, T:0.16
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:81663317 original size:7 final size:7
Alignment explanation
Indices: 81663307--81663333 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
81663297 GTTAAATAAA
81663307 AAATACT
1 AAATACT
81663314 AAATACT
1 AAATACT
81663321 AAATACT
1 AAATACT
81663328 AAATAC
1 AAATAC
81663334 GAATACACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.26
Consensus pattern (7 bp):
AAATACT
Found at i:81663318 original size:14 final size:14
Alignment explanation
Indices: 81663299--81663332 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
81663289 AAATATTAGT
81663299 TAAATAAAAAATAC
1 TAAATAAAAAATAC
**
81663313 TAAATACTAAATAC
1 TAAATAAAAAATAC
81663327 TAAATA
1 TAAATA
81663333 CGAATACACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (14 bp):
TAAATAAAAAATAC
Found at i:81664455 original size:15 final size:15
Alignment explanation
Indices: 81664435--81664465 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
81664425 TTTTTATTTT
*
81664435 AAAAAATAAATTTAG
1 AAAAAATAAAATTAG
81664450 AAAAAATAAAATTAG
1 AAAAAATAAAATTAG
81664465 A
1 A
81664466 GCTTTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (15 bp):
AAAAAATAAAATTAG
Found at i:81664540 original size:11 final size:11
Alignment explanation
Indices: 81664496--81664534 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
81664486 GAGATTTTTT
* *
81664496 AGAGGAATTTA
1 AGAGAAATTTG
81664507 AGAGAAATTTG
1 AGAGAAATTTG
81664518 AGAGAAATTTG
1 AGAGAAATTTG
81664529 AGAGAA
1 AGAGAA
81664535 TATTGAAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.49, C:0.00, G:0.28, T:0.23
Consensus pattern (11 bp):
AGAGAAATTTG
Found at i:81665411 original size:35 final size:34
Alignment explanation
Indices: 81665353--81665447 Score: 93
Period size: 35 Copynumber: 2.7 Consensus size: 34
81665343 ATAAATTTAG
* **
81665353 TATAAATACAATTTAATTTATATTTGATTATTTGAT
1 TATAAATATAATTTAA-AAATATTTGA-TATTTGAT
* *
81665389 T-TAAATATAATTTGTAAAATATTTTGATATTTTAT
1 TATAAATATAATTT-AAAAATA-TTTGATATTTGAT
*
81665424 TATGAATATAATTTAAAAATATTT
1 TATAAATATAATTTAAAAATATTT
81665448 AAATTTTATT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
34 3 0.06
35 28 0.57
36 18 0.37
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (34 bp):
TATAAATATAATTTAAAAATATTTGATATTTGAT
Found at i:81665432 original size:36 final size:35
Alignment explanation
Indices: 81665375--81665447 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 35
81665365 TTAATTTATA
*
81665375 TTTGATTATTTGATTTAAATATAATTTGTAAAATAT
1 TTTGATTATTTGATTTAAATATAATTT-AAAAATAT
* *
81665411 TTTGA-TATTTTATTATGAATATAATTTAAAAATAT
1 TTTGATTATTTGATT-TAAATATAATTTAAAAATAT
81665446 TT
1 TT
81665448 AAATTTTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
35 17 0.52
36 16 0.48
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (35 bp):
TTTGATTATTTGATTTAAATATAATTTAAAAATAT
Found at i:81665668 original size:21 final size:21
Alignment explanation
Indices: 81665644--81665692 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
81665634 CATTGTTTCT
* *
81665644 AATCTCACCGCTATAGTATCC
1 AATCTCACCGCTACAGTAACC
*
81665665 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
81665686 AATCTCA
1 AATCTCA
81665693 TCGCCACCTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.33, G:0.08, T:0.27
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:81668770 original size:91 final size:91
Alignment explanation
Indices: 81668615--81668798 Score: 341
Period size: 91 Copynumber: 2.0 Consensus size: 91
81668605 TACTAAAACT
*
81668615 TTCAATTGAGCAATTTATAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
1 TTCAATTGAGCAATTCATAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
81668680 TACATAACTCTGTCACTAATATCGCA
66 TACATAACTCTGTCACTAATATCGCA
*
81668706 TTCAATTGAGTAATTCATAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
1 TTCAATTGAGCAATTCATAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
*
81668771 TACATAACTCTGTCACTAATATTGCA
66 TACATAACTCTGTCACTAATATCGCA
81668797 TT
1 TT
81668799 TACAGAGCAT
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 90 1.00
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.34
Consensus pattern (91 bp):
TTCAATTGAGCAATTCATAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
TACATAACTCTGTCACTAATATCGCA
Found at i:81669324 original size:20 final size:20
Alignment explanation
Indices: 81669278--81669358 Score: 74
Period size: 20 Copynumber: 4.0 Consensus size: 20
81669268 GAAGATGCGT
* *
81669278 AACAGAGGCATCAAAATGCA
1 AACAGAGGCAACAAAGTGCA
* * *
81669298 GATAGAGG-AAGAAATGTGCA
1 AACAGAGGCAACAAA-GTGCA
*
81669318 AACAGAGGCACCAAAGTGCA
1 AACAGAGGCAACAAAGTGCA
* *
81669338 AACAGAGACACCAAAGTGCA
1 AACAGAGGCAACAAAGTGCA
81669358 A
1 A
81669359 TCCCGTACAA
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
19 4 0.08
20 41 0.84
21 4 0.08
ACGTcount: A:0.48, C:0.19, G:0.25, T:0.09
Consensus pattern (20 bp):
AACAGAGGCAACAAAGTGCA
Found at i:81670207 original size:43 final size:43
Alignment explanation
Indices: 81670151--81670236 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
81670141 GAAGGTAAGG
81670151 GTCTTGATCTATTTTTTTTTTAAAAAGTCCCATGGAAGAAAAA
1 GTCTTGATCTATTTTTTTTTTAAAAAGTCCCATGGAAGAAAAA
81670194 GTCTTGATCTATTTTTTTTTTAAAAAGTCCCATGGAAGAAAAA
1 GTCTTGATCTATTTTTTTTTTAAAAAGTCCCATGGAAGAAAAA
81670237 AAAATATCTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.40
Consensus pattern (43 bp):
GTCTTGATCTATTTTTTTTTTAAAAAGTCCCATGGAAGAAAAA
Found at i:81673211 original size:27 final size:27
Alignment explanation
Indices: 81673170--81673347 Score: 184
Period size: 27 Copynumber: 6.6 Consensus size: 27
81673160 CCTTAATTTT
** *
81673170 TAAAATTACCAAAATACCCCCAGCTTG
1 TAAAATTACTGAAATACCCCCAGTTTG
* *
81673197 TAAAATTACTGAAATACCCCCGGATTG
1 TAAAATTACTGAAATACCCCCAGTTTG
* *
81673224 TAAAATTACTAAAATACCCCGA-TTTG
1 TAAAATTACTGAAATACCCCCAGTTTG
81673250 TAAAATTA-TCGAAATACCCCCAGTTTG
1 TAAAATTACT-GAAATACCCCCAGTTTG
* * * *
81673277 TAAAATTAATGAAATACTCTCGGTTTG
1 TAAAATTACTGAAATACCCCCAGTTTG
* *
81673304 TAAAATTACTAAAATACCCTC-GATTTG
1 TAAAATTACTGAAATACCCCCAG-TTTG
81673331 TAAAATTA-TCGAAATAC
1 TAAAATTACT-GAAATAC
81673348 TCTTGTAGTG
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
25 1 0.01
26 23 0.18
27 104 0.81
28 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCCCAGTTTG
Found at i:81673305 original size:80 final size:81
Alignment explanation
Indices: 81673165--81673347 Score: 287
Period size: 80 Copynumber: 2.3 Consensus size: 81
81673155 TAAGACCTTA
* * * *
81673165 ATTTTTAAAATTACCAAAATACCCCCAGCTTGTAAAATTACTGAAATACCCCCGGATTGTAAAAT
1 ATTTGTAAAATTATCGAAATACCCCCAGCTTGTAAAATTAATGAAATACCCCCGGATTGTAAAAT
81673230 TACTAAAATACCC-CG
66 TACTAAAATACCCTCG
* * * *
81673245 ATTTGTAAAATTATCGAAATACCCCCAGTTTGTAAAATTAATGAAATACTCTCGGTTTGTAAAAT
1 ATTTGTAAAATTATCGAAATACCCCCAGCTTGTAAAATTAATGAAATACCCCCGGATTGTAAAAT
81673310 TACTAAAATACCCTCG
66 TACTAAAATACCCTCG
81673326 ATTTGTAAAATTATCGAAATAC
1 ATTTGTAAAATTATCGAAATAC
81673348 TCTTGTAGTG
Statistics
Matches: 94, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 70 0.74
81 24 0.26
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (81 bp):
ATTTGTAAAATTATCGAAATACCCCCAGCTTGTAAAATTAATGAAATACCCCCGGATTGTAAAAT
TACTAAAATACCCTCG
Found at i:81673331 original size:54 final size:53
Alignment explanation
Indices: 81673194--81673376 Score: 180
Period size: 54 Copynumber: 3.4 Consensus size: 53
81673184 TACCCCCAGC
* * *
81673194 TTGTAAAATTACTGAAATACCCCCGGA-TTGTAAAATTACTAAAATAC-CCCGAT
1 TTGTAAAATTACTGAAATA-CCCC-GATTTGTAAAATTAATGAAATACTCTCGAT
* *
81673247 TTGTAAAATTA-TCGAAATACCCCCAGTTTGTAAAATTAATGAAATACTCTCGGT
1 TTGTAAAATTACT-GAAATACCCCGA-TTTGTAAAATTAATGAAATACTCTCGAT
* *
81673301 TTGTAAAATTACTAAAATACCCTCGATTTGTAAAATT-ATCGAAATACTCTTG-T
1 TTGTAAAATTACTGAAATACCC-CGATTTGTAAAATTAAT-GAAATACTCTCGAT
*
81673354 AGTGTAAAATTA-TCGAAATACCC
1 -TTGTAAAATTACT-GAAATACCC
81673377 TTGTAGAGTA
Statistics
Matches: 111, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
51 1 0.01
52 5 0.05
53 39 0.35
54 63 0.57
55 3 0.03
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.32
Consensus pattern (53 bp):
TTGTAAAATTACTGAAATACCCCGATTTGTAAAATTAATGAAATACTCTCGAT
Found at i:81673359 original size:27 final size:27
Alignment explanation
Indices: 81673248--81673525 Score: 296
Period size: 27 Copynumber: 10.3 Consensus size: 27
81673238 TACCCCGATT
** *
81673248 TGTAAAATTATCGAAATACCCCCAGT-T
1 TGTAAAATTATCGAAATA-CCCTTGTAG
* * *
81673275 TGTAAAATTAAT-GAAATACTCTCGGT-T
1 TGTAAAATT-ATCGAAATACCCT-TGTAG
* * *
81673302 TGTAAAATTA-CTAAAATACCCTCG-ATT
1 TGTAAAATTATC-GAAATACCCTTGTA-G
*
81673329 TGTAAAATTATCGAAATACTCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
81673356 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
* *
81673383 AGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
81673410 TGTAAAATTATTGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
81673437 TGTAAAATTATCGAAATATCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
* * * *
81673464 TGTAAAATTACCAAAATACCCTTTTAA
1 TGTAAAATTATCGAAATACCCTTGTAG
*
81673491 TGTAAAATTATCGAAATACCCCTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
81673518 AGTAAAAT
1 TGTAAAAT
81673526 GACTATTTTG
Statistics
Matches: 214, Mismatches: 29, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.02
27 206 0.96
28 4 0.02
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCTTGTAG
Found at i:81673364 original size:81 final size:82
Alignment explanation
Indices: 81673195--81673525 Score: 342
Period size: 81 Copynumber: 4.1 Consensus size: 82
81673185 ACCCCCAGCT
* * *
81673195 TGTAAAATTA-CTGAAATACCCCCGG-ATTGTAAAATTACTAAAATACCC-CGATTTGTAAAATT
1 TGTAAAATTATC-GAAATACCCTCGGTAGTGTAAAATTACCAAAATACCCTCGATTTGTAAAATT
* *
81673257 ATCGAAATACCCCCAGT-T
65 ATCGAAATA-CCCCTGTAG
* * *
81673275 TGTAAAATTAAT-GAAATACTCTCGGT-TTGTAAAATTACTAAAATACCCTCGATTTGTAAAATT
1 TGTAAAATT-ATCGAAATACCCTCGGTAGTGTAAAATTACCAAAATACCCTCGATTTGTAAAATT
* *
81673338 ATCGAAATACTCTTGTAG
65 ATCGAAATACCCCTGTAG
* * * * *
81673356 TGTAAAATTATCGAAATACCCT-TGTAGAGTAAAATTACCGAAATACCCTTG-TAGTGTAAAATT
1 TGTAAAATTATCGAAATACCCTCGGTAGTGTAAAATTACCAAAATACCCTCGAT-TTGTAAAATT
* *
81673419 ATTGAAATACCCTTGTAG
65 ATCGAAATACCCCTGTAG
* * *
81673437 TGTAAAATTATCGAAATATCCT-TGTAGTGTAAAATTACCAAAATACCCT--TTTAATGTAAAAT
1 TGTAAAATTATCGAAATACCCTCGGTAGTGTAAAATTACCAAAATACCCTCGATT--TGTAAAAT
81673499 TATCGAAATACCCCTGTAG
64 TATCGAAATACCCCTGTAG
*
81673518 AGTAAAAT
1 TGTAAAAT
81673526 GACTATTTTG
Statistics
Matches: 217, Mismatches: 23, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
80 52 0.24
81 165 0.76
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.32
Consensus pattern (82 bp):
TGTAAAATTATCGAAATACCCTCGGTAGTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTA
TCGAAATACCCCTGTAG
Found at i:81673632 original size:34 final size:34
Alignment explanation
Indices: 81673575--81673665 Score: 137
Period size: 34 Copynumber: 2.7 Consensus size: 34
81673565 ATGAATTTGG
* *
81673575 CTGATTTGACTGTGGTTGCATGACTGTGTTTTAA
1 CTGAATTGACTGTGGTTGTATGACTGTGTTTTAA
*
81673609 CTGAATTGATTGTGGTTGTATGACTGTGTTTTAA
1 CTGAATTGACTGTGGTTGTATGACTGTGTTTTAA
* *
81673643 CTGACTTGACTGTGGTTATATGA
1 CTGAATTGACTGTGGTTGTATGA
81673666 TTAACATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 51 1.00
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.44
Consensus pattern (34 bp):
CTGAATTGACTGTGGTTGTATGACTGTGTTTTAA
Found at i:81674019 original size:27 final size:27
Alignment explanation
Indices: 81673962--81674033 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 27
81673952 ATTATGGCTT
* *
81673962 TGTGCCAATCGTATTTACTTGTGGCTA
1 TGTGCCAATCATATTTACTTGTGACTA
* *
81673989 TGTGCCTATCATATTTA-TTGATGACTC
1 TGTGCCAATCATATTTACTTG-TGACTA
* *
81674016 TGTGTCGATCATATTTAC
1 TGTGCCAATCATATTTAC
81674034 CCATGGCTGT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
26 3 0.08
27 34 0.92
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (27 bp):
TGTGCCAATCATATTTACTTGTGACTA
Found at i:81675512 original size:27 final size:25
Alignment explanation
Indices: 81675477--81675584 Score: 99
Period size: 26 Copynumber: 4.0 Consensus size: 25
81675467 AGCATGGCTG
*
81675477 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTG-CAGAGCCA
*
81675503 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GT-GCAGAGCCA
**
81675531 CCAGAACAGATATATGTGGTGAGCCA
1 CCAGAACAGATA-ATGTGCAGAGCCA
* *
81675557 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGT-GCAGAGCCA
81675584 C
1 C
81675585 TAGGACGCTT
Statistics
Matches: 67, Mismatches: 9, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
25 1 0.01
26 25 0.37
27 25 0.37
28 15 0.22
29 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (25 bp):
CCAGAACAGATAATGTGCAGAGCCA
Found at i:81677025 original size:24 final size:24
Alignment explanation
Indices: 81676998--81677048 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
81676988 CTAGATTTCC
**
81676998 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
81677022 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
81677046 TCC
1 TCC
81677049 TAACAGACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.39, G:0.02, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:81684013 original size:28 final size:28
Alignment explanation
Indices: 81683978--81684032 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
81683968 GGTATATCGA
81683978 TAATTTTGCTCTTTAGGGGTAATTTCAG
1 TAATTTTGCTCTTTAGGGGTAATTTCAG
81684006 TAATTTTGCTCTTTAGGGGTAATTTCA
1 TAATTTTGCTCTTTAGGGGTAATTTCA
81684033 TGATCTACGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.22, C:0.11, G:0.20, T:0.47
Consensus pattern (28 bp):
TAATTTTGCTCTTTAGGGGTAATTTCAG
Found at i:81685887 original size:19 final size:18
Alignment explanation
Indices: 81685850--81685893 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
81685840 ATACATACAG
81685850 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
81685867 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
81685886 TACTAATT
1 TAATAATT
81685894 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:81686590 original size:27 final size:25
Alignment explanation
Indices: 81686555--81686665 Score: 105
Period size: 27 Copynumber: 4.2 Consensus size: 25
81686545 AGCATGGCTG
*
81686555 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTG-CAGAGCCA
*
81686581 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GT-GCAGAGCCA
**
81686609 CCAGAACAGATATATGTGGTGAGCCA
1 CCAGAACAGATA-ATGTGCAGAGCCA
* *
81686635 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGT-GCAGAGCCA
81686662 CCAG
1 CCAG
81686666 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
25 1 0.01
26 25 0.36
27 28 0.40
28 15 0.21
29 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (25 bp):
CCAGAACAGATAATGTGCAGAGCCA
Found at i:81686619 original size:54 final size:53
Alignment explanation
Indices: 81686555--81686665 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 53
81686545 AGCATGGCTG
*
81686555 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATATATGTG-CAGAGCCACCAGAT-CAGATAATCGTGGCAGAACCA
** * * *
81686609 CCAGAACAGATATATGTGGTGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGCAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
81686662 CCAG
1 CCAG
81686666 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 22 0.44
54 23 0.46
55 5 0.10
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (53 bp):
CCAGAACAGATATATGTGCAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
Found at i:81688109 original size:24 final size:24
Alignment explanation
Indices: 81688082--81688132 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
81688072 CTAGATTTCC
**
81688082 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
81688106 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
81688130 TCC
1 TCC
81688133 TGACAGACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.39, G:0.02, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:81705103 original size:46 final size:48
Alignment explanation
Indices: 81705047--81705139 Score: 118
Period size: 46 Copynumber: 2.0 Consensus size: 48
81705037 CACATCACAC
* *
81705047 ACCGAAGCCATAGCCCTGCCATGGTCTTACACGG-ATCACA-TATCAT
1 ACCGAAGCCATAGCCCAGACATGGTCTTACACGGAATCACATTATCAT
* * * *
81705093 ACCGATGCCATATCCCAGATATGGTCTTATACGGAATCACATTATCA
1 ACCGAAGCCATAGCCCAGACATGGTCTTACACGGAATCACATTATCA
81705140 CATCACACCG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
46 28 0.72
47 6 0.15
48 5 0.13
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (48 bp):
ACCGAAGCCATAGCCCAGACATGGTCTTACACGGAATCACATTATCAT
Found at i:81705204 original size:51 final size:52
Alignment explanation
Indices: 81705047--81705246 Score: 193
Period size: 52 Copynumber: 4.0 Consensus size: 52
81705037 CACATCACAC
* * * *
81705047 ACCGAAGCCATAGCCCTGCCATGGTCTTACACGG-ATCAC--AT---ATCAT
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATATCACATCAT
* * *
81705093 ACCGATGCCATATCCCAGATATGGTCTTATACGGAATCACATTATCACATCAC
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACA-TATCACATCAT
* **
81705146 ACCGATGCCATA-ACCAGCTATGGTCTTATACGGGAA-CACGA-ATCACATTGT
1 ACCGATGCCATAGCCCAGCTATGGTCTTATAC-GGAATCAC-ATATCACATCAT
* * *
81705197 ACCGATGCCATAGCCCGGCTATGGTCTTATACCGAATCATATATCACATC
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATATCACATC
81705247 TTTTCCGTCA
Statistics
Matches: 125, Mismatches: 17, Indels: 18
0.78 0.11 0.11
Matches are distributed among these distances:
46 28 0.22
47 5 0.04
50 2 0.02
51 23 0.18
52 46 0.37
53 21 0.17
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (52 bp):
ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATATCACATCAT
Found at i:81706065 original size:10 final size:10
Alignment explanation
Indices: 81706050--81706078 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
81706040 CTGGAGAAGA
81706050 TGAAGAAAAT
1 TGAAGAAAAT
81706060 TGAAGAAAAT
1 TGAAGAAAAT
81706070 TGAAGAAAA
1 TGAAGAAAA
81706079 CTCTAGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.21, T:0.17
Consensus pattern (10 bp):
TGAAGAAAAT
Found at i:81707502 original size:21 final size:22
Alignment explanation
Indices: 81707476--81707521 Score: 76
Period size: 21 Copynumber: 2.1 Consensus size: 22
81707466 TAATTCCGAA
81707476 ACATGCCCAAGTGA-AGGAGGC
1 ACATGCCCAAGTGAGAGGAGGC
*
81707497 ACATGCCCATGTGAGAGGAGGC
1 ACATGCCCAAGTGAGAGGAGGC
81707519 ACA
1 ACA
81707522 CGGCTGTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.33, C:0.24, G:0.33, T:0.11
Consensus pattern (22 bp):
ACATGCCCAAGTGAGAGGAGGC
Found at i:81714795 original size:37 final size:37
Alignment explanation
Indices: 81714736--81714844 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
81714726 AGCTCAGATG
* *
81714736 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
81714773 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
81714810 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
81714845 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:81715049 original size:48 final size:48
Alignment explanation
Indices: 81714985--81715812 Score: 1390
Period size: 48 Copynumber: 17.0 Consensus size: 48
81714975 ATATACACAC
* *
81714985 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
81715033 ATCTCATGCATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
81715081 ATCTCATATATATATTTCACATTAACCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
81715131 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81715179 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
81715227 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
81715277 ATCTCAT--ATATTTCACATTAACCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81715323 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
81715371 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
81715421 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
81715469 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81715519 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
81715567 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
81715617 ATCTCATACATATTTCACATTAACCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81715665 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
81715713 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81715763 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81715811 AT
1 AT
81715813 ATTTATCTTG
Statistics
Matches: 739, Mismatches: 27, Indels: 28
0.93 0.03 0.04
Matches are distributed among these distances:
46 45 0.06
48 417 0.56
50 277 0.37
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:81715146 original size:146 final size:146
Alignment explanation
Indices: 81714985--81715812 Score: 1425
Period size: 146 Copynumber: 5.7 Consensus size: 146
81714975 ATATACACAC
* * * *
81714985 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATGCATGTTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
81715050 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGC
66 CATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
81715115 TTTACCACATATACAT
131 TTTACCACATATACAT
*
81715131 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCATATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
81715196 CATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
66 CATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
81715261 TTTACCACATATACAT
131 TTTACCACATATACAT
*
81715277 ATCTCAT--ATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
81715340 CATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
66 CATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
81715405 TTTACCACATATACAT
131 TTTACCACATATACAT
* *
81715421 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
*
81715486 CACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCG
64 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCG
81715549 GCTTTACCACATATACAT
129 GCTTTACCACATATACAT
*
81715567 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
* *
81715632 CACATTAACCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCG
64 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCG
81715695 GCTTTACCACATATACAT
129 GCTTTACCACATATACAT
*
81715713 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
81715778 CACATTAGCCATTCGGCTTTACCACATATACATAT
64 CACATTAGCCATTCGGCTTTACCACATATACATAT
81715813 ATTTATCTTG
Statistics
Matches: 658, Mismatches: 18, Indels: 12
0.96 0.03 0.02
Matches are distributed among these distances:
144 142 0.22
146 423 0.64
148 93 0.14
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (146 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
TTTACCACATATACAT
Found at i:81715147 original size:98 final size:96
Alignment explanation
Indices: 81714985--81715812 Score: 1390
Period size: 98 Copynumber: 8.5 Consensus size: 96
81714975 ATATACACAC
* * * * *
81714985 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATGCATGTTTCA
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
81715050 CACTAGCCATTCGGCTTTACCACATATACAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
*
81715081 ATCTCATATATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 ATCTC--ATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
*
81715146 CACATTAGCCATTCGGCTTTACCATATATACAT
64 CACATTAGCCATTCGGCTTTACCACATATACAT
* *
81715179 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
81715244 CACATTAGCCATTCGGCTTTACCACATATACAT
64 CACATTAGCCATTCGGCTTTACCACATATACAT
*
81715277 ATCTC--ATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
81715340 CATTAGCCATTCGGCTTTACCACATATACAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
81715371 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 ATCTC--ATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
*
81715436 CACATTAGCCATTCAGCTTTACCACATATACAT
64 CACATTAGCCATTCGGCTTTACCACATATACAT
81715469 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 ATCTC--ATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
81715534 CACATTAGCCATTCGGCTTTACCACATATACAT
64 CACATTAGCCATTCGGCTTTACCACATATACAT
81715567 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 ATCTC--ATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
*
81715632 CACATTAACCATTCGGCTTTACCACATATACAT
64 CACATTAGCCATTCGGCTTTACCACATATACAT
* *
81715665 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
81715730 CACATTAGCCATTCGGCTTTACCACATATACAT
64 CACATTAGCCATTCGGCTTTACCACATATACAT
*
81715763 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
81715813 ATTTATCTTG
Statistics
Matches: 700, Mismatches: 22, Indels: 18
0.95 0.03 0.02
Matches are distributed among these distances:
94 47 0.07
96 142 0.20
98 511 0.73
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (96 bp):
ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CATTAGCCATTCGGCTTTACCACATATACAT
Found at i:81723547 original size:31 final size:31
Alignment explanation
Indices: 81723504--81723567 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
81723494 CTTTTTCATA
81723504 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
81723535 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
81723566 TT
1 TT
81723568 ACCGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:81723805 original size:23 final size:24
Alignment explanation
Indices: 81723774--81723903 Score: 219
Period size: 24 Copynumber: 5.4 Consensus size: 24
81723764 CTGGAGGCCT
81723774 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
81723798 AGCCCTTTTTTAATAACTGGGGCATA
1 AGCCC--TTTTAATAACTGGGGCATA
81723824 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
81723847 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
81723871 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
81723895 AGCCCTTTT
1 AGCCCTTTT
81723904 GCACTCCCTC
Statistics
Matches: 102, Mismatches: 0, Indels: 8
0.93 0.00 0.07
Matches are distributed among these distances:
23 24 0.24
24 55 0.54
25 17 0.17
26 6 0.06
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:81723975 original size:9 final size:9
Alignment explanation
Indices: 81723961--81724017 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
81723951 ATCTCGTGTG
81723961 CATATCATA
1 CATATCATA
*
81723970 CATATCATGTG
1 CATATCA--TA
81723981 CATATCATA
1 CATATCATA
* *
81723990 CATGTCATGTG
1 CATATCA--TA
81724001 CATATCATA
1 CATATCATA
81724010 CATATCAT
1 CATATCAT
81724018 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:81723980 original size:20 final size:20
Alignment explanation
Indices: 81723957--81724019 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
81723947 GAACATCTCG
81723957 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
81723977 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
81723997 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
81724017 TGT
1 TGT
81724020 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:81724084 original size:25 final size:25
Alignment explanation
Indices: 81724056--81724103 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
81724046 ATATATAAAC
* * *
81724056 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
81724081 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
81724104 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:81727147 original size:25 final size:25
Alignment explanation
Indices: 81727113--81727163 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
81727103 ACAAGCATAG
*
81727113 ATTAAGTGAGGGGGATAAAAATGGT
1 ATTAAGTGAGGGGGATAAAAACGGT
*
81727138 ATTAAGTGAGGGGGATGAAAACGGT
1 ATTAAGTGAGGGGGATAAAAACGGT
81727163 A
1 A
81727164 AGTATGCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.02, G:0.37, T:0.22
Consensus pattern (25 bp):
ATTAAGTGAGGGGGATAAAAACGGT
Found at i:81727462 original size:12 final size:13
Alignment explanation
Indices: 81727435--81727476 Score: 52
Period size: 12 Copynumber: 3.3 Consensus size: 13
81727425 TTGCTTGTAC
81727435 AAAAGTAAATAAAT
1 AAAA-TAAATAAAT
*
81727449 AAAATGAA-AAAT
1 AAAATAAATAAAT
81727461 -AAATAAATAAAT
1 AAAATAAATAAAT
81727473 AAAA
1 AAAA
81727477 GCTTAAGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
11 6 0.25
12 8 0.33
13 6 0.25
14 4 0.17
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (13 bp):
AAAATAAATAAAT
Found at i:81730118 original size:43 final size:42
Alignment explanation
Indices: 81730070--81730220 Score: 119
Period size: 43 Copynumber: 3.5 Consensus size: 42
81730060 TAATGCCAAC
* *
81730070 GTCCCAGACGTGGTCTTACATGTAATCAAATATAGTTGTC-ACT
1 GTCCCAGACGTGGTCTTACATGTAATCAAATAT-GATGCCGA-T
* * *
81730113 GTCCCAAACAG-GGTCTTACATGAAATCATATATGATGCCGAT
1 GTCCCAGAC-GTGGTCTTACATGTAATCAAATATGATGCCGAT
* * * * * *
81730155 GTCCTAGACATGGTCTTACACGTAAATCTCAAGT-CGATGCCAAT
1 GTCCCAGACGTGGTCTTACATGT-AA--TCAAATATGATGCCGAT
*
81730199 GTCCCAGACGTAGTCTTACATG
1 GTCCCAGACGTGGTCTTACATG
81730221 ATATCACACT
Statistics
Matches: 84, Mismatches: 18, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
42 22 0.26
43 31 0.37
44 27 0.32
45 4 0.05
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (42 bp):
GTCCCAGACGTGGTCTTACATGTAATCAAATATGATGCCGAT
Found at i:81742283 original size:30 final size:30
Alignment explanation
Indices: 81742249--81742339 Score: 77
Period size: 30 Copynumber: 3.2 Consensus size: 30
81742239 TTGATGATCT
81742249 CTTTCCTGAATTTCTAGCTTCAAAATCAGC
1 CTTTCCTGAATTTCTAGCTTCAAAATCAGC
*** * *
81742279 CTTT-CT---TTTCT--CTTACTTGATGACC
1 CTTTCCTGAATTTCTAGCTT-CAAAATCAGC
81742304 TCTTTCCTGAATTTCTAGCTTCAAAATCAGC
1 -CTTTCCTGAATTTCTAGCTTCAAAATCAGC
81742335 CTTTC
1 CTTTC
81742340 TTTTCTCTTT
Statistics
Matches: 43, Mismatches: 10, Indels: 16
0.62 0.14 0.23
Matches are distributed among these distances:
24 3 0.07
25 5 0.12
26 9 0.21
27 2 0.05
29 2 0.05
30 14 0.33
31 5 0.12
32 3 0.07
ACGTcount: A:0.21, C:0.27, G:0.09, T:0.43
Consensus pattern (30 bp):
CTTTCCTGAATTTCTAGCTTCAAAATCAGC
Found at i:81742301 original size:56 final size:56
Alignment explanation
Indices: 81742234--81742348 Score: 221
Period size: 56 Copynumber: 2.1 Consensus size: 56
81742224 ACTGAAATGA
*
81742234 CTTACTTGATGATCTCTTTCCTGAATTTCTAGCTTCAAAATCAGCCTTTCTTTTCT
1 CTTACTTGATGACCTCTTTCCTGAATTTCTAGCTTCAAAATCAGCCTTTCTTTTCT
81742290 CTTACTTGATGACCTCTTTCCTGAATTTCTAGCTTCAAAATCAGCCTTTCTTTTCT
1 CTTACTTGATGACCTCTTTCCTGAATTTCTAGCTTCAAAATCAGCCTTTCTTTTCT
81742346 CTT
1 CTT
81742349 TCCCAAGCTC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.19, C:0.26, G:0.09, T:0.46
Consensus pattern (56 bp):
CTTACTTGATGACCTCTTTCCTGAATTTCTAGCTTCAAAATCAGCCTTTCTTTTCT
Found at i:81749585 original size:14 final size:16
Alignment explanation
Indices: 81749566--81749598 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
81749556 TTCAATCTAT
81749566 TTCCCATAT-TAT-CA
1 TTCCCATATGTATCCA
81749580 TTCCCATATGTATCCA
1 TTCCCATATGTATCCA
81749596 TTC
1 TTC
81749599 ACTAGGCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 3 0.18
16 5 0.29
ACGTcount: A:0.24, C:0.30, G:0.03, T:0.42
Consensus pattern (16 bp):
TTCCCATATGTATCCA
Found at i:81752726 original size:40 final size:40
Alignment explanation
Indices: 81752521--81752746 Score: 282
Period size: 40 Copynumber: 5.7 Consensus size: 40
81752511 TCGAATGATG
* * * *
81752521 TCCGGGCTAAGTCCTGAAGGC-TCTGTGCTAAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
81752561 TCCGGACTAAGAT-CCGAAGGCAATTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81752601 TCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
81752641 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81752681 TCCGGGA-TAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCC-GGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
81752722 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
81752747 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 12, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
39 3 0.02
40 152 0.92
41 11 0.07
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:81754348 original size:16 final size:16
Alignment explanation
Indices: 81754323--81754353 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81754313 ACTACTTTTT
81754323 ATTTTATTTTTATTTA
1 ATTTTATTTTTATTTA
*
81754339 ATTTTCTTTTTATTT
1 ATTTTATTTTTATTT
81754354 CATCCTTAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (16 bp):
ATTTTATTTTTATTTA
Found at i:81757739 original size:43 final size:43
Alignment explanation
Indices: 81757679--81757781 Score: 101
Period size: 42 Copynumber: 2.4 Consensus size: 43
81757669 GTCCCAGAAG
*
81757679 TGGTCTTACA-TGT-AATCAAATATC-ATTGCC-ACTGTCCTAGATA
1 TGGTCTTACACT-TAAATCAAATA-CGA-TGCCGA-TGTCCTAGACA
*
81757722 -GAGTCTTACAC-TAAATCATATACGATGCCGATGTCCTAGACA
1 TG-GTCTTACACTTAAATCAAATACGATGCCGATGTCCTAGACA
81757764 TGGTCTTACACTTAAATC
1 TGGTCTTACACTTAAATC
81757782 TCAAGTCGAT
Statistics
Matches: 51, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
42 26 0.51
43 25 0.49
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (43 bp):
TGGTCTTACACTTAAATCAAATACGATGCCGATGTCCTAGACA
Found at i:81758932 original size:13 final size:13
Alignment explanation
Indices: 81758914--81758938 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81758904 ACAAACGATA
81758914 AAATTTTCACACG
1 AAATTTTCACACG
81758927 AAATTTTCACAC
1 AAATTTTCACAC
81758939 ATATCATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:81760878 original size:96 final size:101
Alignment explanation
Indices: 81760754--81761001 Score: 294
Period size: 96 Copynumber: 2.5 Consensus size: 101
81760744 GGTTTTTAAA
* * ** *
81760754 TTTTAGGG-TTTTAAGAAAAAAATTAAATAAATTAGGGTTTAGTGTTTGTTAATTAAATTAATTA
1 TTTTAGGGTTTTTAAGAAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTA
*
81760818 CT-AATTTT-AAAAAATTAGATT-A-T-GGTTTAGTG
66 -TAAATTTTAAAAAAATTAGATTGATTAGGTTTAGGG
* * *
81760850 -TTTATGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTA
1 TTTTAGGGTTTTTAAGAAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTA
81760914 TAAATTTTAAAAAAATTAGATTAGGATTTTAGGGTTTAGGG
66 TAAATTTTAAAAAAATTAGATT--GA--TTA-GGTTTAGGG
* *
81760955 TTTTAGGGTATTTAAGAAAAAAATCAAATAAATTAGGGTTTGGGGTT
1 TTTTAGGGTTTTTAAGAAAAAAATCAAATAAATTAGGGTTTAGGGTT
81761002 TAAGGTAACT
Statistics
Matches: 127, Mismatches: 13, Indels: 14
0.82 0.08 0.09
Matches are distributed among these distances:
95 7 0.06
96 55 0.43
97 13 0.10
100 1 0.01
103 1 0.01
105 8 0.06
106 42 0.33
ACGTcount: A:0.39, C:0.02, G:0.19, T:0.40
Consensus pattern (101 bp):
TTTTAGGGTTTTTAAGAAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTA
TAAATTTTAAAAAAATTAGATTGATTAGGTTTAGGG
Found at i:81760958 original size:15 final size:15
Alignment explanation
Indices: 81760934--81760963 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81760924 AAAAATTAGA
81760934 TTAGGATTTTAGGGT
1 TTAGGATTTTAGGGT
*
81760949 TTAGGGTTTTAGGGT
1 TTAGGATTTTAGGGT
81760964 ATTTAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (15 bp):
TTAGGATTTTAGGGT
Found at i:81761576 original size:126 final size:126
Alignment explanation
Indices: 81761046--81761569 Score: 825
Period size: 126 Copynumber: 4.2 Consensus size: 126
81761036 AAAAGCTTCT
* * *
81761046 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAAAAGACGTGTCTGCACAA
* *
81761111 ATAGTGTCAAAAACGCTTCAATCAGGATGCATTGTCAGCAAAAGTACTAAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * *
81761172 ACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAACTTTGAAAAGACGTGTTTGTACAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAAAAGACGTGTCTGCACAA
* * *
81761237 ATAGTGTAAAAAACACTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTTCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* *
81761298 ACGTAGACGCTCTTTTGCTACAGTAGTCTTTGAAAAAATAATTTTGAAAAGACGTGTCTGCACAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAAAAGACGTGTCTGCACAA
* * *
81761363 ATAGTGGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAGAAGCTCCC
66 ATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * * *
81761424 ACGTGGATGCTCTTTTACTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAAAAGACGTGTCTGCACAA
*
81761489 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
81761550 ACGTGGACGCTCTTTTGCTA
1 ACGTGGACGCTCTTTTGCTA
81761570 TAGTGGTTTC
Statistics
Matches: 363, Mismatches: 33, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
125 2 0.01
126 359 0.99
127 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.27
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAAAAGACGTGTCTGCACAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:81764773 original size:116 final size:116
Alignment explanation
Indices: 81764598--81764980 Score: 694
Period size: 116 Copynumber: 3.3 Consensus size: 116
81764588 TTTATATTTT
* * *
81764598 ATTACATGAAATAATATAAAAATATTCAAAATATTGCTTTATTTAAAATAATTTTCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
* *
81764663 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATATT
66 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
*
81764714 ATCACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
*
81764779 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
81764830 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
81764895 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
*
81764946 ATTACATGAAATAATATAAAAAGATTCAAAATGTT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTT
81764981 TGTACAAATA
Statistics
Matches: 257, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
116 257 1.00
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.40
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:81765367 original size:18 final size:18
Alignment explanation
Indices: 81765341--81765383 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
81765331 GACTAGAAAA
* *
81765341 AGGAAACATATAAGGGCT
1 AGGATACATAAAAGGGCT
81765359 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
81765377 AGGATAC
1 AGGATAC
81765384 GTACCTGGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.44, C:0.12, G:0.28, T:0.16
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:81766008 original size:7 final size:7
Alignment explanation
Indices: 81765998--81766024 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
81765988 GTTAAATAAA
81765998 AAATACT
1 AAATACT
81766005 AAATACT
1 AAATACT
81766012 AAATACT
1 AAATACT
81766019 AAATAC
1 AAATAC
81766025 GAATCCACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.26
Consensus pattern (7 bp):
AAATACT
Found at i:81766009 original size:14 final size:14
Alignment explanation
Indices: 81765990--81766023 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
81765980 AAATATTAGT
81765990 TAAATAAAAAATAC
1 TAAATAAAAAATAC
**
81766004 TAAATACTAAATAC
1 TAAATAAAAAATAC
81766018 TAAATA
1 TAAATA
81766024 CGAATCCACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (14 bp):
TAAATAAAAAATAC
Found at i:81767145 original size:15 final size:15
Alignment explanation
Indices: 81767125--81767155 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
81767115 TTTTTATTTT
*
81767125 AAAAAATAAATTTAG
1 AAAAAATAAAATTAG
81767140 AAAAAATAAAATTAG
1 AAAAAATAAAATTAG
81767155 A
1 A
81767156 GCTTTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (15 bp):
AAAAAATAAAATTAG
Found at i:81767205 original size:11 final size:11
Alignment explanation
Indices: 81767186--81767233 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
81767176 GAGATTTTTT
* *
81767186 AGAGGAATTTA
1 AGAGAAATTTG
81767197 AGAGAAATTTG
1 AGAGAAATTTG
81767208 AGAG--ATTTG
1 AGAGAAATTTG
81767217 AGAGAAATTTG
1 AGAGAAATTTG
81767228 AGAGAA
1 AGAGAA
81767234 TATTGAAAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 9 0.27
11 24 0.73
ACGTcount: A:0.46, C:0.00, G:0.29, T:0.25
Consensus pattern (11 bp):
AGAGAAATTTG
Found at i:81767220 original size:20 final size:20
Alignment explanation
Indices: 81767192--81767232 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
81767182 TTTTAGAGGA
81767192 ATTTAAGAGAAATTTGAGAG
1 ATTTAAGAGAAATTTGAGAG
*
81767212 ATTTGAGAGAAATTTGAGAG
1 ATTTAAGAGAAATTTGAGAG
81767232 A
1 A
81767233 ATATTGAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.27, T:0.29
Consensus pattern (20 bp):
ATTTAAGAGAAATTTGAGAG
Found at i:81767245 original size:31 final size:31
Alignment explanation
Indices: 81767186--81767245 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
81767176 GAGATTTTTT
* *
81767186 AGAGGAATTTAAGAGAAATTTGAGAGATTTG
1 AGAGAAATTTAAGAGAAATTTGAAAGATTTG
*
81767217 AGAGAAATTTGAGAG-AATATTGAAAGATT
1 AGAGAAATTTAAGAGAAAT-TTGAAAGATT
81767246 GAATATTGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 3 0.12
31 22 0.88
ACGTcount: A:0.45, C:0.00, G:0.27, T:0.28
Consensus pattern (31 bp):
AGAGAAATTTAAGAGAAATTTGAAAGATTTG
Found at i:81768109 original size:35 final size:34
Alignment explanation
Indices: 81768051--81768145 Score: 93
Period size: 35 Copynumber: 2.7 Consensus size: 34
81768041 ATAAATTTAG
* **
81768051 TATAAATACAATTTAATTTATATTTGATTATTTGAT
1 TATAAATATAATTTAA-AAATATTTGA-TATTTGAT
* *
81768087 T-TAAATATAATTTGTAAAATATTTTGATATTTTAT
1 TATAAATATAATTT-AAAAATA-TTTGATATTTGAT
*
81768122 TATGAATATAATTTAAAAATATTT
1 TATAAATATAATTTAAAAATATTT
81768146 AAATTTTATT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
34 3 0.06
35 28 0.57
36 18 0.37
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (34 bp):
TATAAATATAATTTAAAAATATTTGATATTTGAT
Found at i:81768130 original size:36 final size:35
Alignment explanation
Indices: 81768073--81768145 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 35
81768063 TTAATTTATA
*
81768073 TTTGATTATTTGATTTAAATATAATTTGTAAAATAT
1 TTTGATTATTTGATTTAAATATAATTT-AAAAATAT
* *
81768109 TTTGA-TATTTTATTATGAATATAATTTAAAAATAT
1 TTTGATTATTTGATT-TAAATATAATTTAAAAATAT
81768144 TT
1 TT
81768146 AAATTTTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
35 17 0.52
36 16 0.48
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (35 bp):
TTTGATTATTTGATTTAAATATAATTTAAAAATAT
Found at i:81768368 original size:21 final size:21
Alignment explanation
Indices: 81768342--81768390 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
81768332 CATTGTTTCT
* *
81768342 AATCTCAGCGCTATAGTATCC
1 AATCTCACCGCTATAGTAACC
*
81768363 AATCTCACCGCTATAGTAACT
1 AATCTCACCGCTATAGTAACC
81768384 AATCTCA
1 AATCTCA
81768391 TCGCCACCTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.29, G:0.10, T:0.29
Consensus pattern (21 bp):
AATCTCACCGCTATAGTAACC
Found at i:81769149 original size:21 final size:21
Alignment explanation
Indices: 81769104--81769158 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
81769094 ACCATTGTTT
* *
81769104 CTAATCTCACTGCTACAATAT
1 CTAATCTCACCGCTACAATAA
* *
81769125 CTAATCTCACCGCTGCAGTAA
1 CTAATCTCACCGCTACAATAA
*
81769146 CTAACCTCACCGC
1 CTAATCTCACCGC
81769159 CACCGCTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.29, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
CTAATCTCACCGCTACAATAA
Found at i:81770382 original size:91 final size:91
Alignment explanation
Indices: 81770227--81770410 Score: 341
Period size: 91 Copynumber: 2.0 Consensus size: 91
81770217 TACTAAAACT
*
81770227 TTCAATTGAGCAATTTATAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
1 TTCAATTGAGCAATTCATAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
81770292 TACATAACTCTGTCACTAATATCGCA
66 TACATAACTCTGTCACTAATATCGCA
*
81770318 TTCAATTGAGCAATTCCTAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
1 TTCAATTGAGCAATTCATAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
*
81770383 TACATAACTCTGTCACTAATATTGCA
66 TACATAACTCTGTCACTAATATCGCA
81770409 TT
1 TT
81770411 TACAGAGCAT
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 90 1.00
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.34
Consensus pattern (91 bp):
TTCAATTGAGCAATTCATAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
TACATAACTCTGTCACTAATATCGCA
Found at i:81770951 original size:20 final size:20
Alignment explanation
Indices: 81770928--81770966 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
81770918 AAGAAATGTG
*
81770928 CAAACAGAGGCACCAAAGTA
1 CAAACAGAGACACCAAAGTA
81770948 CAAACAGAGACACCAAAGT
1 CAAACAGAGACACCAAAGT
81770967 GCAATCCCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.26, G:0.18, T:0.05
Consensus pattern (20 bp):
CAAACAGAGACACCAAAGTA
Found at i:81771802 original size:42 final size:42
Alignment explanation
Indices: 81771753--81771836 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
81771743 GAAGGTAAGG
*
81771753 GTCTTGATCTATTT-TTTTTAAAAAAGTCCCATGGAATAAAAA
1 GTCTTGATCTATTTGTTTTT-AAAAAGTCCCATGGAAGAAAAA
81771795 GTCTTGATCTATTTGTTTTTAAAAAGTCCCATGGAAGAAAAA
1 GTCTTGATCTATTTGTTTTTAAAAAGTCCCATGGAAGAAAAA
81771837 AAAATATCTA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
42 35 0.88
43 5 0.12
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (42 bp):
GTCTTGATCTATTTGTTTTTAAAAAGTCCCATGGAAGAAAAA
Found at i:81773334 original size:48 final size:47
Alignment explanation
Indices: 81773273--81773404 Score: 156
Period size: 48 Copynumber: 2.8 Consensus size: 47
81773263 TAGGGTTATG
* * *
81773273 TGTGATCCATGTAAGGCCATGTCTGGGACATGGCATTAGCATCGATC
1 TGTGATCCATGTAAGACCATGTCTGGGACATGGCATTAGCATCAATA
* * *
81773320 TGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCAATA
1 TGTGAT-CCATGTAAGACCATGTCTGGGACATGGCATTAGCATCAATA
* * * *
81773368 TATAATTTCATATAAGACCATGTCTGGGACATGGCAT
1 TGTGA-TCCATGTAAGACCATGTCTGGGACATGGCAT
81773405 CGATATGAGC
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
47 6 0.08
48 64 0.90
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (47 bp):
TGTGATCCATGTAAGACCATGTCTGGGACATGGCATTAGCATCAATA
Found at i:81773426 original size:42 final size:42
Alignment explanation
Indices: 81773380--81773489 Score: 102
Period size: 43 Copynumber: 2.6 Consensus size: 42
81773370 TAATTTCATA
*
81773380 TAAGACCATGTCTGGGACATGGCATCGATATGAG--CCATCGTG
1 TAAGACCATGTCTGGGACATGGCATCGATATGAGATCCA--ATG
* * * *
81773422 TAAGACCATAG-CTAGG-CTATCGGCTTCGATCTGTGATCCAATG
1 TAAGACCAT-GTCTGGGAC-AT-GGCATCGATATGAGATCCAATG
81773465 TAAGACCATGTCTGGGACATGGCAT
1 TAAGACCATGTCTGGGACATGGCAT
81773490 TGGTATCAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
41 1 0.02
42 20 0.37
43 29 0.54
44 1 0.02
45 3 0.06
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATGGCATCGATATGAGATCCAATG
Found at i:81774846 original size:46 final size:46
Alignment explanation
Indices: 81774796--81774968 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
81774786 TGGTTGAGCA
* *
81774796 TCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGAGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACG
* * *
81774842 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AGA--A--CG
* *
81774889 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACG
* * * *
81774935 CCCGAGCTCGTTAAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81774969 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 3 0.03
46 58 0.56
47 29 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACG
Found at i:81774952 original size:93 final size:93
Alignment explanation
Indices: 81774793--81774963 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
81774783 GGATGGTTGA
* * *
81774793 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGAGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTAAGT
81774858 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
81774886 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTAAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTAAGT
*
81774951 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
81774964 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTAAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81782394 original size:46 final size:46
Alignment explanation
Indices: 81782344--81782515 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
81782334 TGGTTGAGCA
81782344 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81782390 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
81782435 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
81782483 CCCGAGCTCGTTGAGTTGAGT-CGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81782516 GGGGCAGGTT
Statistics
Matches: 107, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 14 0.13
46 48 0.45
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81782500 original size:93 final size:92
Alignment explanation
Indices: 81782341--81782510 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 92
81782331 GGATGGTTGA
* *
81782341 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81782406 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGT-CGAGTTCGTGAGATGTAACTAG
* *
81782434 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81782499 TGAGTCGAGTTC
66 TGAGTCGAGTTC
81782511 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 7 0.10
93 66 0.90
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCGAGTTCGTGAGATGTAACTAG
Found at i:81785246 original size:31 final size:31
Alignment explanation
Indices: 81785203--81785279 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
81785193 GTGTCCCAAG
*
81785203 CCACACGGGCGTGTGTGATCACACGGCCTAC
1 CCACACGAGCGTGTGTGATCACACGGCCTAC
81785234 CCACACGAGCGTGTGTGATCACACGGCCTAC
1 CCACACGAGCGTGTGTGATCACACGGCCTAC
*
81785265 CCACACAAGCGTGTG
1 CCACACGAGCGTGTG
81785280 ACCCTCCAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.22, C:0.35, G:0.27, T:0.16
Consensus pattern (31 bp):
CCACACGAGCGTGTGTGATCACACGGCCTAC
Found at i:81804706 original size:39 final size:39
Alignment explanation
Indices: 81804652--81804734 Score: 166
Period size: 39 Copynumber: 2.1 Consensus size: 39
81804642 CAATCTTTTC
81804652 AATTATTAAAAATTCAAAAGAAATAATGCATTACTCCAG
1 AATTATTAAAAATTCAAAAGAAATAATGCATTACTCCAG
81804691 AATTATTAAAAATTCAAAAGAAATAATGCATTACTCCAG
1 AATTATTAAAAATTCAAAAGAAATAATGCATTACTCCAG
81804730 AATTA
1 AATTA
81804735 ATCATGATCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.52, C:0.12, G:0.07, T:0.29
Consensus pattern (39 bp):
AATTATTAAAAATTCAAAAGAAATAATGCATTACTCCAG
Found at i:81805649 original size:33 final size:33
Alignment explanation
Indices: 81805609--81805679 Score: 142
Period size: 33 Copynumber: 2.2 Consensus size: 33
81805599 GCACATCCCC
81805609 TTTTTTTTGAGTTCTCTGTAAACCTTCTTTTTT
1 TTTTTTTTGAGTTCTCTGTAAACCTTCTTTTTT
81805642 TTTTTTTTGAGTTCTCTGTAAACCTTCTTTTTT
1 TTTTTTTTGAGTTCTCTGTAAACCTTCTTTTTT
81805675 TTTTT
1 TTTTT
81805680 ACTCTATTCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.11, C:0.14, G:0.08, T:0.66
Consensus pattern (33 bp):
TTTTTTTTGAGTTCTCTGTAAACCTTCTTTTTT
Found at i:81807803 original size:27 final size:27
Alignment explanation
Indices: 81807762--81807939 Score: 153
Period size: 27 Copynumber: 6.6 Consensus size: 27
81807752 CTTTAATTTT
*
81807762 TAAAATTACCAAAATACCCCCAGCTTG
1 TAAAATTACCAAAATACCCCCAGTTTG
* * *
81807789 TAAAATTACCGAAATACCCCCGGATTG
1 TAAAATTACCAAAATACCCCCAGTTTG
* * *
81807816 TAAAATTACTAAAATACGCCGA-TTTG
1 TAAAATTACCAAAATACCCCCAGTTTG
* * *
81807842 TAAAATTATCGAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCCAGTTTG
*** * * *
81807869 TAAAATTAATGAAATACTCTCGGTTTG
1 TAAAATTACCAAAATACCCCCAGTTTG
* **
81807896 TAAAATTACTAAAATACCTTC-GATTTG
1 TAAAATTACCAAAATACCCCCAG-TTTG
*
81807923 TAAAATTATCAAAATAC
1 TAAAATTACCAAAATAC
81807940 TCTTGTAGTG
Statistics
Matches: 123, Mismatches: 26, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 21 0.17
27 102 0.83
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCCAGTTTG
Found at i:81807897 original size:80 final size:80
Alignment explanation
Indices: 81807757--81807939 Score: 251
Period size: 80 Copynumber: 2.3 Consensus size: 80
81807747 TAAGACTTTA
* * *
81807757 ATTTTTAAAATTACCAAAATACCCCCAGCTTGTAAAATTACCGAAATACCCCCGGATTGTAAAAT
1 ATTTGTAAAATTATCAAAATACCCCCAGCTTGTAAAATTAACGAAATACCCCCGGATTGTAAAAT
81807822 TACTAAAATACGC-CG
66 TACTAAAATAC-CTCG
* * * * * * *
81807837 ATTTGTAAAATTATCGAAATACCCCTAGTTTGTAAAATTAATGAAATACTCTCGGTTTGTAAAAT
1 ATTTGTAAAATTATCAAAATACCCCCAGCTTGTAAAATTAACGAAATACCCCCGGATTGTAAAAT
81807902 TACTAAAATACCTTCG
66 TACTAAAATACC-TCG
81807918 ATTTGTAAAATTATCAAAATAC
1 ATTTGTAAAATTATCAAAATAC
81807940 TCTTGTAGTG
Statistics
Matches: 90, Mismatches: 11, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
79 1 0.01
80 66 0.73
81 23 0.26
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (80 bp):
ATTTGTAAAATTATCAAAATACCCCCAGCTTGTAAAATTAACGAAATACCCCCGGATTGTAAAAT
TACTAAAATACCTCG
Found at i:81807938 original size:54 final size:53
Alignment explanation
Indices: 81807757--81807968 Score: 159
Period size: 54 Copynumber: 4.0 Consensus size: 53
81807747 TAAGACTTTA
* * * * * * *
81807757 ATTTTTAAAATTACCAAAATACCCCCAGCTTGTAAAATTACCGAAATACCCCCGG
1 ATTTGTAAAATTATCAAAATACTCTCGGTTTGTAAAATTACTGAAATA-CCCC-G
* * *
81807812 A-TTGTAAAATTA-CTAAAATACGC-CGATTTGTAAAATTA-TCGAAATACCCCT
1 ATTTGTAAAATTATC-AAAATACTCTCGGTTTGTAAAATTACT-GAAATACCCCG
* * *
81807863 AGTTTGTAAAATTAAT-GAAATACTCTCGGTTTGTAAAATTACTAAAATACCTTCG
1 A-TTTGTAAAATT-ATCAAAATACTCTCGGTTTGTAAAATTACTGAAATACC-CCG
* *
81807918 ATTTGTAAAATTATCAAAATACTCT-TGTAGTGTAAAATTA-TCGAAATACCC
1 ATTTGTAAAATTATCAAAATACTCTCGGT-TTGTAAAATTACT-GAAATACCC
81807969 TTGTAGAGTA
Statistics
Matches: 127, Mismatches: 18, Indels: 26
0.74 0.11 0.15
Matches are distributed among these distances:
51 1 0.01
52 4 0.03
53 41 0.32
54 77 0.61
55 4 0.03
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (53 bp):
ATTTGTAAAATTATCAAAATACTCTCGGTTTGTAAAATTACTGAAATACCCCG
Found at i:81807951 original size:27 final size:27
Alignment explanation
Indices: 81807840--81808117 Score: 289
Period size: 27 Copynumber: 10.3 Consensus size: 27
81807830 TACGCCGATT
* *
81807840 TGTAAAATTATCGAAATACCCCTAGT-T
1 TGTAAAATTATCGAAATA-CCCTTGTAG
* * *
81807867 TGTAAAATTAAT-GAAATACTCTCGGT-T
1 TGTAAAATT-ATCGAAATACCCT-TGTAG
* *
81807894 TGTAAAATTA-CTAAAATA-CCTTCG-ATT
1 TGTAAAATTATC-GAAATACCCTT-GTA-G
* *
81807921 TGTAAAATTATCAAAATACTCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
81807948 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
* *
81807975 AGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
81808002 TGTAAAATTATTGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
81808029 TGTAAAATTATCGAAATATCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
* * * *
81808056 TGTAAAATTACCAAAATACCCTTTTAA
1 TGTAAAATTATCGAAATACCCTTGTAG
*
81808083 TGTAAAATTATCGAAATACCCCTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
81808110 AGTAAAAT
1 TGTAAAAT
81808118 GACTGTTTTG
Statistics
Matches: 214, Mismatches: 27, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.03
27 200 0.93
28 7 0.03
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCTTGTAG
Found at i:81807956 original size:81 final size:83
Alignment explanation
Indices: 81807787--81808117 Score: 335
Period size: 81 Copynumber: 4.1 Consensus size: 83
81807777 ACCCCCAGCT
* * * * *
81807787 TGTAAAATTACCGAAATACCCCCGG-ATTGTAAAATTACTAAAATACGC--CGATTTGTAAAATT
1 TGTAAAATTATCGAAATACCCTCGGTAGTGTAAAATTACCAAAATACCCTTCGATTTGTAAAATT
* *
81807849 ATCGAAATACCCCTAGT-T
66 ATCGAAATA-CCCTTGTAG
* * *
81807867 TGTAAAATTAAT-GAAATACTCTCGGT-TTGTAAAATTACTAAAATA-CCTTCGATTTGTAAAAT
1 TGTAAAATT-ATCGAAATACCCTCGGTAGTGTAAAATTACCAAAATACCCTTCGATTTGTAAAAT
* *
81807929 TATCAAAATACTCTTGTAG
65 TATCGAAATACCCTTGTAG
* * * *
81807948 TGTAAAATTATCGAAATACCCT-TGTAGAGTAAAATTACCGAAATACCCTT-G-TAGTGTAAAAT
1 TGTAAAATTATCGAAATACCCTCGGTAGTGTAAAATTACCAAAATACCCTTCGAT-TTGTAAAAT
*
81808010 TATTGAAATACCCTTGTAG
65 TATCGAAATACCCTTGTAG
* * ** *
81808029 TGTAAAATTATCGAAATATCCT-TGTAGTGTAAAATTACCAAAATACCCTTTTA-ATGTAAAATT
1 TGTAAAATTATCGAAATACCCTCGGTAGTGTAAAATTACCAAAATACCCTTCGATTTGTAAAATT
*
81808092 ATCGAAATACCCCTGTAG
66 ATCGAAATACCCTTGTAG
*
81808110 AGTAAAAT
1 TGTAAAAT
81808118 GACTGTTTTG
Statistics
Matches: 214, Mismatches: 26, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
79 1 0.00
80 49 0.23
81 160 0.75
82 4 0.02
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (83 bp):
TGTAAAATTATCGAAATACCCTCGGTAGTGTAAAATTACCAAAATACCCTTCGATTTGTAAAATT
ATCGAAATACCCTTGTAG
Found at i:81808220 original size:34 final size:34
Alignment explanation
Indices: 81808167--81808259 Score: 141
Period size: 34 Copynumber: 2.7 Consensus size: 34
81808157 ATGAATTTGG
*
81808167 CTGATTTGACTGTGGTTGTATGACTGTGTTTTAA
1 CTGAATTGACTGTGGTTGTATGACTGTGTTTTAA
*
81808201 CTGAATTGACTGTGATTGTATGACTGTGTTTTAA
1 CTGAATTGACTGTGGTTGTATGACTGTGTTTTAA
** *
81808235 CTGGCTTGACTGTGGTTATATGACT
1 CTGAATTGACTGTGGTTGTATGACT
81808260 AACATGCTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 53 1.00
ACGTcount: A:0.19, C:0.11, G:0.26, T:0.44
Consensus pattern (34 bp):
CTGAATTGACTGTGGTTGTATGACTGTGTTTTAA
Found at i:81808743 original size:2 final size:2
Alignment explanation
Indices: 81808736--81808773 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
81808726 GGCTTAAAGC
81808736 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81808774 ACAGCTTTAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81810294 original size:22 final size:21
Alignment explanation
Indices: 81810267--81810313 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
81810257 TGTGTCATAG
*
81810267 TCACACAGCCGTGTGCCTCCT
1 TCACACAGCCATGTGCCTCCT
* *
81810288 CTCACACGGGCATGTGCCTCCT
1 -TCACACAGCCATGTGCCTCCT
81810310 TCAC
1 TCAC
81810314 TTGGGCATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.15, C:0.43, G:0.19, T:0.23
Consensus pattern (21 bp):
TCACACAGCCATGTGCCTCCT
Found at i:81810319 original size:21 final size:22
Alignment explanation
Indices: 81810278--81810323 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
81810268 CACACAGCCG
81810278 TGTGCCTCCTCTCACACGGGCA
1 TGTGCCTCCTCTCACACGGGCA
**
81810300 TGTGCCTCCT-TCACTTGGGCA
1 TGTGCCTCCTCTCACACGGGCA
81810321 TGT
1 TGT
81810324 TTCGGAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.11, C:0.35, G:0.24, T:0.30
Consensus pattern (22 bp):
TGTGCCTCCTCTCACACGGGCA
Found at i:81812642 original size:52 final size:53
Alignment explanation
Indices: 81812563--81812717 Score: 149
Period size: 52 Copynumber: 3.0 Consensus size: 53
81812553 GAAGGAAAAG
* ** * *
81812563 ATGTGATATATGATTTGGCATAAGACCATAGTC-GGGTTATGGCATCGGTACA
1 ATGTGATATGTGATTCCGTATAAGACCATAGTCTGGGATATGGCATCGGTACA
* * ***
81812615 ATGTGAT-TCGTG-TTCCCGTATAAGACCATAG-CTAGGCTATGGCATCGGTGTG
1 ATGTGATAT-GTGATT-CCGTATAAGACCATAGTCTGGGATATGGCATCGGTACA
*
81812667 ATGTGATAATGTGATTCTGTATAAGACCATA-TCTGGGATATGGCATCGGTA
1 ATGTGAT-ATGTGATTCCGTATAAGACCATAGTCTGGGATATGGCATCGGTA
81812718 TGGTATGTGA
Statistics
Matches: 83, Mismatches: 13, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
51 4 0.05
52 43 0.52
53 33 0.40
54 3 0.04
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (53 bp):
ATGTGATATGTGATTCCGTATAAGACCATAGTCTGGGATATGGCATCGGTACA
Found at i:81812710 original size:53 final size:52
Alignment explanation
Indices: 81812582--81812717 Score: 143
Period size: 53 Copynumber: 2.6 Consensus size: 52
81812572 ATGATTTGGC
*
81812582 ATAAGACCATAGTC-GGGTTATGGCATCGGTACAATGTGATTCGTGTTCCCGT
1 ATAAGACCATA-TCTGGGATATGGCATCGGTACAATGTGATTCGTGTTCCCGT
* * * *** *
81812634 ATAAGACCATAGCTAGGCTATGGCATCGGTGTGATGTGATAAT-GTGATT-CTGT
1 ATAAGACCATATCTGGGATATGGCATCGGTACAATGTGAT--TCGTG-TTCCCGT
81812687 ATAAGACCATATCTGGGATATGGCATCGGTA
1 ATAAGACCATATCTGGGATATGGCATCGGTA
81812718 TGGTATGTGA
Statistics
Matches: 69, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
51 1 0.01
52 32 0.46
53 33 0.48
54 3 0.04
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.30
Consensus pattern (52 bp):
ATAAGACCATATCTGGGATATGGCATCGGTACAATGTGATTCGTGTTCCCGT
Done.