Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 265 of 410
Found at i:81820035 original size:53 final size:52
Alignment explanation
Indices: 81819888--81820088 Score: 186
Period size: 52 Copynumber: 4.0 Consensus size: 52
81819878 TGACTGAAAA
* * **
81819888 GATGTGATATATGATTCAGTATAAGACCATAGCCAGGCTATGGCATCGGTAC
1 GATGTGATATGTGATTCTGTATAAGACCATAGCTGGGCTATGGCATCGGTAC
* *
81819940 AATGTGAT-TCGTG-TTCCTGTATAAGACCATAGCTGGGCTATGGCATCGG-AGT
1 GATGTGATAT-GTGATT-CTGTATAAGACCATAGCTGGGCTATGGCATCGGTA-C
* *
81819992 GATGTGATAATGTGATTCTGTATAAGACCATATCTGGGATATGGCATCGGT--
1 GATGTGAT-ATGTGATTCTGTATAAGACCATAGCTGGGCTATGGCATCGGTAC
* * * * *
81820043 -A--TGATATGTGA-TCCGTGTAAGACCATGGCAGGGCTATGGCTTCGGT
1 GATGTGATATGTGATTCTGTATAAGACCATAGCTGGGCTATGGCATCGGT
81820089 GTGTGATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 20
0.78 0.10 0.12
Matches are distributed among these distances:
46 28 0.22
47 6 0.05
48 4 0.03
50 1 0.01
51 4 0.03
52 46 0.37
53 34 0.27
54 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (52 bp):
GATGTGATATGTGATTCTGTATAAGACCATAGCTGGGCTATGGCATCGGTAC
Found at i:81820066 original size:46 final size:52
Alignment explanation
Indices: 81819953--81820087 Score: 138
Period size: 53 Copynumber: 2.7 Consensus size: 52
81819943 GTGATTCGTG
*
81819953 TTCCTGTATAAGACCATAGCTGGGCTATGGCATCGGAGTGATGTGATAATGTGA
1 TTCC-GTATAAGACCATAGCTGGGATATGGCATCGGAGTGA-GTGATAATGTGA
* *
81820007 TTCTGTATAAGACCATATCTGGGATATGGCATC-G-GT-A-TGAT-ATGTGA
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGGAGTGAGTGATAATGTGA
* * * * *
81820054 -TCCGTGTAAGACCATGGCAGGGCTATGGCTTCGG
1 TTCCGTATAAGACCATAGCTGGGATATGGCATCGG
81820088 TGTGTGATGT
Statistics
Matches: 70, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
46 25 0.36
47 7 0.10
48 4 0.06
50 1 0.01
51 2 0.03
52 1 0.01
53 27 0.39
54 3 0.04
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (52 bp):
TTCCGTATAAGACCATAGCTGGGATATGGCATCGGAGTGAGTGATAATGTGA
Found at i:81820866 original size:20 final size:20
Alignment explanation
Indices: 81820841--81820898 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
81820831 TGCACTTGGG
*
81820841 CAGGCCACACGGGCATGTTC
1 CAGGCCACACGGGCATGTCC
* *
81820861 CAGGCCACATGGGCGTGTCC
1 CAGGCCACACGGGCATGTCC
*
81820881 CAAGCCACACGGGCATGT
1 CAGGCCACACGGGCATGT
81820899 GCCTCTATCT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.21, C:0.34, G:0.31, T:0.14
Consensus pattern (20 bp):
CAGGCCACACGGGCATGTCC
Found at i:81823990 original size:21 final size:21
Alignment explanation
Indices: 81823964--81824004 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
81823954 TCAATCTTAC
*
81823964 CAACAAAGACCACCTCTAAAT
1 CAACAAAGACCACCCCTAAAT
**
81823985 CAACAATTACCACCCCTAAA
1 CAACAAAGACCACCCCTAAA
81824005 GTCATCTTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.37, G:0.02, T:0.15
Consensus pattern (21 bp):
CAACAAAGACCACCCCTAAAT
Found at i:81825682 original size:25 final size:25
Alignment explanation
Indices: 81825648--81825698 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
81825638 ACAATCATAG
*
81825648 ATTAAGTGAGGGGGATAAAAATGGT
1 ATTAAGTGAGGGGGATAAAAACGGT
*
81825673 ATTAAGTGAGGGGGATGAAAACGGT
1 ATTAAGTGAGGGGGATAAAAACGGT
81825698 A
1 A
81825699 AGTATGCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.02, G:0.37, T:0.22
Consensus pattern (25 bp):
ATTAAGTGAGGGGGATAAAAACGGT
Found at i:81828659 original size:43 final size:42
Alignment explanation
Indices: 81828601--81828750 Score: 128
Period size: 44 Copynumber: 3.5 Consensus size: 42
81828591 TAATGCCAAC
** *
81828601 GTCCCAGAC-GTGGTCTTACATGTAATCAAATATCGTTGCC-ATT
1 GTCCCAGACAG-GGTCTTACATAAAATCAAATA-CGATGCCGA-T
*
81828644 GTCCCAGACAGGGTCTTACATAAAATCATATACGATGCCGAT
1 GTCCCAGACAGGGTCTTACATAAAATCAAATACGATGCCGAT
* * * * *
81828686 GTCCTAGACATGGTCTTACACATAAATCTCAAGT-CGATGCCAAT
1 GTCCCAGACAGGGTCTT--ACATAAA-ATCAAATACGATGCCGAT
81828730 GTCCCAGAC-GTGGTCTTACAT
1 GTCCCAGACAG-GGTCTTACAT
81828751 GATATCACAC
Statistics
Matches: 89, Mismatches: 12, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
42 26 0.29
43 28 0.31
44 31 0.35
45 4 0.04
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (42 bp):
GTCCCAGACAGGGTCTTACATAAAATCAAATACGATGCCGAT
Found at i:81829856 original size:13 final size:13
Alignment explanation
Indices: 81829838--81829862 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81829828 ACAAATGATA
81829838 AAATTTTCACACG
1 AAATTTTCACACG
81829851 AAATTTTCACAC
1 AAATTTTCACAC
81829863 ATATAACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:81832060 original size:40 final size:40
Alignment explanation
Indices: 81831856--81832060 Score: 270
Period size: 40 Copynumber: 5.1 Consensus size: 40
81831846 CGGAGTTTAA
* ** *
81831856 CCGGATATAGTTACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
81831896 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
81831936 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
81831976 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
81832016 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
81832056 CCGGA
1 CCGGA
81832061 CATCATTCGA
Statistics
Matches: 148, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.02
40 134 0.91
41 11 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:81840076 original size:40 final size:40
Alignment explanation
Indices: 81840039--81840222 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
81840029 GCTACTCGTT
*
81840039 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
81840079 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
81840119 CAAATGCCTTC-GGACTTA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
81840157 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
81840198 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81840223 CATCATTCGA
Statistics
Matches: 132, Mismatches: 7, Indels: 10
0.89 0.05 0.07
Matches are distributed among these distances:
38 34 0.26
39 11 0.08
40 74 0.56
41 13 0.10
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:81840163 original size:78 final size:82
Alignment explanation
Indices: 81840039--81840222 Score: 256
Period size: 78 Copynumber: 2.3 Consensus size: 82
81840029 GCTACTCGTT
*
81840039 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
81840102 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
**
81840119 CAAATGCCTTC-GGACTTA-CCCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
81840181 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
81840198 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81840223 CATCATTCGA
Statistics
Matches: 93, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
77 3 0.03
78 50 0.54
79 23 0.25
80 17 0.18
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:81844337 original size:17 final size:17
Alignment explanation
Indices: 81844315--81844360 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
81844305 AGTTTACCCG
*
81844315 TATGGGGTCCACGAGCC
1 TATGGGGCCCACGAGCC
*
81844332 TATGGGGCCCACGAGCT
1 TATGGGGCCCACGAGCC
*
81844349 TATGAGGCCCAC
1 TATGGGGCCCAC
81844361 ACGGTCTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.20, C:0.30, G:0.33, T:0.17
Consensus pattern (17 bp):
TATGGGGCCCACGAGCC
Found at i:81882116 original size:3 final size:3
Alignment explanation
Indices: 81882108--81882147 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
81882098 AATGGCTTAA
* * *
81882108 ATT ATT ATT ATC ATT ATT ATT ACT ACT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
81882148 ATAAATATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:81883391 original size:27 final size:27
Alignment explanation
Indices: 81883361--81883477 Score: 148
Period size: 27 Copynumber: 4.3 Consensus size: 27
81883351 TACTGAAATG
81883361 CCCTCGATTTATAGAATTA-CTATTTTA
1 CCCTCGATTTATAGAATTATC-ATTTTA
* * *
81883388 CCCTCGATTTACAAAATTATCGTTTTA
1 CCCTCGATTTATAGAATTATCATTTTA
*
81883415 CCCTCGATTTCTAGAATTA-CTATTTTA
1 CCCTCGATTTATAGAATTATC-ATTTTA
* *
81883442 CCATCGATTTATAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTATCATTTTA
81883469 CCCTCGATT
1 CCCTCGATT
81883478 AGGAAAATTA
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 73 0.96
28 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.43
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTATCATTTTA
Found at i:81883423 original size:54 final size:54
Alignment explanation
Indices: 81883361--81883477 Score: 198
Period size: 54 Copynumber: 2.2 Consensus size: 54
81883351 TACTGAAATG
*
81883361 CCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACTATTTTACCATCGATTTACAAAATTATCGTTTTA
* * *
81883415 CCCTCGATTTCTAGAATTACTATTTTACCATCGATTTATAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACTATTTTACCATCGATTTACAAAATTATCGTTTTA
81883469 CCCTCGATT
1 CCCTCGATT
81883478 AGGAAAATTA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.43
Consensus pattern (54 bp):
CCCTCGATTTATAGAATTACTATTTTACCATCGATTTACAAAATTATCGTTTTA
Found at i:81883497 original size:27 final size:27
Alignment explanation
Indices: 81883469--81883531 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
81883459 TATCGTTTTA
81883469 CCCTCGATTAGGAAAATTACCAAAATAC
1 CCCT-GATTAGGAAAATTACCAAAATAC
* * *
81883497 CCCTGGTTTGTAAAATTACCAAAATAC
1 CCCTGATTAGGAAAATTACCAAAATAC
81883524 CCCTGATT
1 CCCTGATT
81883532 TACAAAATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 27 0.87
28 4 0.13
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (27 bp):
CCCTGATTAGGAAAATTACCAAAATAC
Found at i:81883538 original size:27 final size:27
Alignment explanation
Indices: 81883481--81883541 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
81883471 CTCGATTAGG
* **
81883481 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTAC
81883508 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACCAAAATACCCCTGATTTAC
81883535 AAAATTA
1 AAAATTA
81883542 TAGAAATACC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTAC
Found at i:81883603 original size:27 final size:27
Alignment explanation
Indices: 81883530--81883615 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
81883520 ATACCCCTGA
* *
81883530 TTTACAAAATTATAGAAATACCCTTGAC
1 TTTACAAAATTATAGAAATACCATTG-G
*
81883558 TTT-CTAAAAATTATAGAAATACTATTGG
1 TTTAC--AAAATTATAGAAATACCATTGG
*
81883586 TTTACAAAATTACT-GAAATACCCTTGG
1 TTTACAAAATTA-TAGAAATACCATTGG
81883613 TTT
1 TTT
81883616 GTAGATTTAC
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
27 22 0.45
28 7 0.14
29 20 0.41
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCATTGG
Found at i:81883716 original size:27 final size:27
Alignment explanation
Indices: 81883669--81883732 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
81883659 ACCCCTAATA
81883669 GGTAAAA-GACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
81883695 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
81883722 GGTAAAATGAC
1 GGTAAAATGAC
81883733 GAATATGCCC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.18
27 26 0.79
28 1 0.03
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:81884585 original size:25 final size:25
Alignment explanation
Indices: 81884547--81884641 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
81884537 AGGAAGTGCT
*
81884547 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
81884572 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
81884597 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
81884622 AAAAGGGCTTTGTCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
81884642 ATTAAAAGAG
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 66 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:81884654 original size:24 final size:25
Alignment explanation
Indices: 81884547--81884654 Score: 109
Period size: 25 Copynumber: 4.4 Consensus size: 25
81884537 AGGAAGTGCT
* *
81884547 AAAAG-GGCTATGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
*
81884571 GAAAAG-GGCTTTGCCCCAGTTTACC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
81884596 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
* *
81884621 AAAA-AGGGCTTTGTCCCAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
81884645 AAAAGAGGCT
1 AAAAGAGGCT
81884655 AGGCCTCCAG
Statistics
Matches: 76, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
24 16 0.21
25 60 0.79
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:81884665 original size:50 final size:50
Alignment explanation
Indices: 81884545--81884666 Score: 149
Period size: 50 Copynumber: 2.4 Consensus size: 50
81884535 GGAGGAAGTG
*
81884545 CTAAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTAC
1 CTAAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTAC
* * * *
81884595 CGAAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTTTGTCCCAG-TTA-
1 CTAAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTAC
* *
81884643 TTAAAAGAGGCTAGGCCTCCAGTT
1 CTAAAAG-GGCTATGCC-CCAGTT
81884667 ATATGATAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
48 5 0.08
49 10 0.16
50 46 0.75
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (50 bp):
CTAAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTAC
Found at i:81897848 original size:40 final size:40
Alignment explanation
Indices: 81897763--81897913 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
81897753 AATTGAATGA
* * * **
81897763 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTT
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACATAC
* * *
81897803 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
81897844 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
81897883 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
81897914 ACATGGTTGT
Statistics
Matches: 91, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 77 0.85
41 5 0.05
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:81897927 original size:40 final size:40
Alignment explanation
Indices: 81897803--81897929 Score: 123
Period size: 40 Copynumber: 3.2 Consensus size: 40
81897793 CTGGAAATTT
* * * * *
81897803 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
* * ** *
81897843 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
*
81897883 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTTG
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
81897923 TATCCGG
1 TATCCGG
81897930 TTATGTTCCG
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
Found at i:81900830 original size:18 final size:17
Alignment explanation
Indices: 81900794--81900870 Score: 84
Period size: 18 Copynumber: 4.4 Consensus size: 17
81900784 TTGCTTAAAT
81900794 AAAAAAAAAACACAA-AAG
1 AAAAAAAAAA-A-AAGAAG
* *
81900812 AAAATAAGAAGAAAGAAG
1 AAAA-AAAAAAAAAGAAG
*
81900830 AAAAAAAAAAAAAAAAG
1 AAAAAAAAAAAAAGAAG
81900847 AAACAAAAAAAAAAGAAG
1 AAA-AAAAAAAAAAGAAG
81900865 AAAAAA
1 AAAAAA
81900871 TAGAGAGAGA
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
17 18 0.36
18 28 0.56
19 4 0.08
ACGTcount: A:0.84, C:0.04, G:0.10, T:0.01
Consensus pattern (17 bp):
AAAAAAAAAAAAAGAAG
Found at i:81900839 original size:24 final size:23
Alignment explanation
Indices: 81900794--81900870 Score: 68
Period size: 24 Copynumber: 3.3 Consensus size: 23
81900784 TTGCTTAAAT
* *
81900794 AAAAAAA-AAAC-ACAAAAGAAA
1 AAAAAAAGAAACAAAAAAAAAAA
* * *
81900815 ATAAGAAGAAAGAAGAAAAAAAAA
1 AAAAAAAGAAACAA-AAAAAAAAA
81900839 AAAAAAAGAAACAAAAAAAAAAGA
1 AAAAAAAGAAACAAAAAAAAAA-A
81900863 AGAAAAAA
1 A-AAAAAA
81900871 TAGAGAGAGA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
21 5 0.12
22 3 0.07
23 9 0.21
24 20 0.47
25 6 0.14
ACGTcount: A:0.84, C:0.04, G:0.10, T:0.01
Consensus pattern (23 bp):
AAAAAAAGAAACAAAAAAAAAAA
Found at i:81900846 original size:20 final size:20
Alignment explanation
Indices: 81900794--81900860 Score: 66
Period size: 20 Copynumber: 3.2 Consensus size: 20
81900784 TTGCTTAAAT
*
81900794 AAAAAAAAA-ACACAAAAGAA
1 AAAAAAAAAGAAACAAAA-AA
81900814 AATAAGAAGAAAGAAGA-AAAAAA
1 AA-AA-AA-AAAGAA-ACAAAAAA
81900837 AAAAAAAAAGAAACAAAAAA
1 AAAAAAAAAGAAACAAAAAA
81900857 AAAA
1 AAAA
81900861 GAAGAAAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
19 1 0.03
20 18 0.45
21 4 0.10
22 4 0.10
23 7 0.17
24 5 0.12
25 1 0.03
ACGTcount: A:0.85, C:0.04, G:0.09, T:0.01
Consensus pattern (20 bp):
AAAAAAAAAGAAACAAAAAA
Found at i:81900846 original size:35 final size:36
Alignment explanation
Indices: 81900794--81900870 Score: 104
Period size: 35 Copynumber: 2.2 Consensus size: 36
81900784 TTGCTTAAAT
* * *
81900794 AAAAAAAAAACACAAAAGAAA-ATAAGAAGAAAGAAG
1 AAAAAAAAAACAAAAAAGAAACA-AAAAAAAAAGAAG
81900830 AAAAAAAAAA-AAAAAAGAAACAAAAAAAAAAGAAG
1 AAAAAAAAAACAAAAAAGAAACAAAAAAAAAAGAAG
81900865 AAAAAA
1 AAAAAA
81900871 TAGAGAGAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
35 26 0.70
36 11 0.30
ACGTcount: A:0.84, C:0.04, G:0.10, T:0.01
Consensus pattern (36 bp):
AAAAAAAAAACAAAAAAGAAACAAAAAAAAAAGAAG
Found at i:81900869 original size:15 final size:14
Alignment explanation
Indices: 81900794--81900870 Score: 66
Period size: 15 Copynumber: 5.4 Consensus size: 14
81900784 TTGCTTAAAT
*
81900794 AAAAAAAAAACACAA
1 AAAAAAAAAAGA-AA
* * *
81900809 AAGAAAATAAGAAG
1 AAAAAAAAAAGAAA
* *
81900823 AAAGAAGAAA-AAA
1 AAAAAAAAAAGAAA
81900836 AAAAAAAAAAGAAA
1 AAAAAAAAAAGAAA
81900850 CAAAAAAAAAAGAAGA
1 -AAAAAAAAAAGAA-A
81900866 AAAAA
1 AAAAA
81900871 TAGAGAGAGA
Statistics
Matches: 48, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
13 10 0.21
14 10 0.21
15 27 0.56
16 1 0.02
ACGTcount: A:0.84, C:0.04, G:0.10, T:0.01
Consensus pattern (14 bp):
AAAAAAAAAAGAAA
Found at i:81901329 original size:42 final size:42
Alignment explanation
Indices: 81901268--81901401 Score: 173
Period size: 42 Copynumber: 3.2 Consensus size: 42
81901258 AAGAAAAGCA
81901268 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
81901310 TTCATTGCATTTAGGGGCCCAAGG-GTGGAGGGCCATTTACTT
1 TTCATTGCATTTAGAGGCCC-AGGTGTGGAGGTCCATTTACTT
* * * *
81901352 TTCATTACATTTAGAGGCCCA-ATCGTAGAGGTCTATTTACTTT
1 TTCATTGCATTTAGAGGCCCAGGT-GTGGAGGTCCATTTAC-TT
81901395 TTCATTG
1 TTCATTG
81901402 TATATGAAGG
Statistics
Matches: 79, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
41 1 0.01
42 67 0.85
43 11 0.14
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.37
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
Found at i:81902345 original size:23 final size:23
Alignment explanation
Indices: 81902319--81902377 Score: 77
Period size: 21 Copynumber: 2.7 Consensus size: 23
81902309 GAACTTGGAA
*
81902319 AAAGTTTTGATTTTTTTTAAAAG
1 AAAGTTTTGATTTTTTTAAAAAG
*
81902342 AAAG-TTT-ATATTTTTAAAAAG
1 AAAGTTTTGATTTTTTTAAAAAG
*
81902363 AAAATTTTGATTTTT
1 AAAGTTTTGATTTTT
81902378 AGTTAATTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
21 15 0.50
22 6 0.20
23 9 0.30
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (23 bp):
AAAGTTTTGATTTTTTTAAAAAG
Found at i:81902593 original size:32 final size:29
Alignment explanation
Indices: 81902543--81902606 Score: 83
Period size: 32 Copynumber: 2.1 Consensus size: 29
81902533 TAAAGGAAAA
* *
81902543 TTTTTAATTTTTAAAATAAAGTTTTGATCT
1 TTTTTAATTTTCAAAATAAAGGTTTGAT-T
81902573 TTTTTAACTATTTCAAAATAAAGGTTTGATT
1 TTTTTAA-T-TTTCAAAATAAAGGTTTGATT
81902604 TTT
1 TTT
81902607 AACAAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
30 7 0.23
31 5 0.17
32 18 0.60
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.55
Consensus pattern (29 bp):
TTTTTAATTTTCAAAATAAAGGTTTGATT
Found at i:81903175 original size:11 final size:10
Alignment explanation
Indices: 81903145--81903180 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
81903135 CACTTGTATA
81903145 ATTTTTATTT
1 ATTTTTATTT
*
81903155 ATTCTTATTT
1 ATTTTTATTT
81903165 ATTGTTTATTT
1 ATT-TTTATTT
81903176 ATTTT
1 ATTTT
81903181 CATGCCTACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.75
Consensus pattern (10 bp):
ATTTTTATTT
Found at i:81903198 original size:2 final size:2
Alignment explanation
Indices: 81903191--81903221 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
81903181 CATGCCTACT
81903191 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81903222 TTTACACATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:81910827 original size:32 final size:34
Alignment explanation
Indices: 81910790--81910860 Score: 101
Period size: 32 Copynumber: 2.1 Consensus size: 34
81910780 ATAGGCCCAC
* * *
81910790 ACTGTTACTGCATAGGGCTTAGG-CCAGACTG-T
1 ACTGTTAATGAATAGGGCTCAGGCCCAGACTGTT
81910822 ACTGTTAATGAATAGGGCTCAGGCCCAGACTGTT
1 ACTGTTAATGAATAGGGCTCAGGCCCAGACTGTT
81910856 ACTGT
1 ACTGT
81910861 ATGCATTGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 20 0.59
33 8 0.24
34 6 0.18
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (34 bp):
ACTGTTAATGAATAGGGCTCAGGCCCAGACTGTT
Found at i:81912130 original size:20 final size:22
Alignment explanation
Indices: 81912112--81912154 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
81912102 TCACCAATAT
*
81912112 CGCAGCATAGCTGCTAATAGTAA
1 CGCAGCAAAGCTGCTAATAGT-A
81912135 CGCAGCAAAGCTGCTAATAG
1 CGCAGCAAAGCTGCTAATAG
81912155 GGTAAACGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (22 bp):
CGCAGCAAAGCTGCTAATAGTA
Found at i:81914897 original size:40 final size:40
Alignment explanation
Indices: 81914825--81915010 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
81914815 GCTACTCGTT
* *
81914825 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
81914865 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
81914905 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
81914945 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
81914986 CAAA-GCCTTCGGGACTGAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81915011 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:81922721 original size:23 final size:23
Alignment explanation
Indices: 81922690--81922777 Score: 131
Period size: 23 Copynumber: 3.8 Consensus size: 23
81922680 TCATTAATAT
*
81922690 CGCAGCATAGCTGCTAATAGTAA
1 CGCAGCAAAGCTGCTAATAGTAA
* *
81922713 CGCAACATAGCTGCTAATAGTAA
1 CGCAGCAAAGCTGCTAATAGTAA
*
81922736 CGTAGCAAAGCTGCTAATAGTAA
1 CGCAGCAAAGCTGCTAATAGTAA
*
81922759 CGCAGCAAAGCTACTAATA
1 CGCAGCAAAGCTGCTAATA
81922778 ACGGTAAATT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 59 1.00
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (23 bp):
CGCAGCAAAGCTGCTAATAGTAA
Found at i:81927274 original size:42 final size:41
Alignment explanation
Indices: 81927175--81927274 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 41
81927165 TAGATACGCC
* * *
81927175 AACAGAAGCTCAAA-AGTTGAACAGAATCTCATAAGAGCTG
1 AACAGAAGCTCAAAGAGTTGAACAGAAGCTCATAAAAGCTA
* * * *
81927215 AATAGAAACTCATAAGAGTTTAACAGAAGCTCGTAAAAGCTA
1 AACAGAAGCTCA-AAGAGTTGAACAGAAGCTCATAAAAGCTA
81927257 AACAGAAGCTCGAAAGAG
1 AACAGAAGCTC-AAAGAG
81927275 CTAATCAAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
40 10 0.21
41 2 0.04
42 35 0.73
43 1 0.02
ACGTcount: A:0.47, C:0.16, G:0.20, T:0.17
Consensus pattern (41 bp):
AACAGAAGCTCAAAGAGTTGAACAGAAGCTCATAAAAGCTA
Found at i:81927277 original size:21 final size:20
Alignment explanation
Indices: 81927175--81927305 Score: 86
Period size: 21 Copynumber: 6.3 Consensus size: 20
81927165 TAGATACGCC
* *
81927175 AACAGAAGCTCAAA-AGTTG
1 AACAGAAGCTCAAAGAGCTA
* *
81927194 AACAGAATCTCATAAGAGCTG
1 AACAGAAGCTCA-AAGAGCTA
* * * *
81927215 AATAGAAACTCATAAGAGTTT
1 AACAGAAGCTCA-AAGAGCTA
81927236 AACAGAAGCTCGTAAA-AGCTA
1 AACAGAAGCTC--AAAGAGCTA
81927257 AACAGAAGCTCGAAAGAGCTA
1 AACAGAAGCTC-AAAGAGCTA
* * *
81927278 ATCAAAAGCTCGAATGAGCTA
1 AACAGAAGCTC-AAAGAGCTA
*
81927299 AATAGAA
1 AACAGAA
81927306 AGTAAAACAC
Statistics
Matches: 90, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
19 11 0.12
20 5 0.06
21 71 0.79
22 2 0.02
23 1 0.01
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (20 bp):
AACAGAAGCTCAAAGAGCTA
Found at i:81927969 original size:30 final size:30
Alignment explanation
Indices: 81927930--81927993 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
81927920 TTATTTTATA
*
81927930 AAATCATCATACAACAAAAATTAAAGCTCT
1 AAATAATCATACAACAAAAATTAAAGCTCT
81927960 AAATAATCATACAACAAAAATTAAAGCTCT
1 AAATAATCATACAACAAAAATTAAAGCTCT
81927990 AAAT
1 AAAT
81927994 CCATGTTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.56, C:0.17, G:0.03, T:0.23
Consensus pattern (30 bp):
AAATAATCATACAACAAAAATTAAAGCTCT
Found at i:81929452 original size:38 final size:38
Alignment explanation
Indices: 81929409--81929484 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
81929399 TCTTCGCGGC
*
81929409 AAAGAAAGGAAAAAGCTAGGGTTTTCTAACTTTGATTT
1 AAAGAAAGGAAAAAGCTAGGGTTTTCCAACTTTGATTT
*
81929447 AAAGAAAGGGAAAAGCTAGGGTTTTCCAACTTTGATTT
1 AAAGAAAGGAAAAAGCTAGGGTTTTCCAACTTTGATTT
81929485 TACACTTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.30
Consensus pattern (38 bp):
AAAGAAAGGAAAAAGCTAGGGTTTTCCAACTTTGATTT
Found at i:81934104 original size:40 final size:40
Alignment explanation
Indices: 81934031--81934107 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
81934021 ACGGTACCTT
* * *
81934031 TTGGTGTGTAGGGTTGGATGGGTTGATTATATCCCCATAC
1 TTGGGGTGTAGGGTTGGATAGGTCGATTATATCCCCATAC
* *
81934071 TTGGGGTGTAGGGTTGGGTAGGTCGATTCTATCCCCA
1 TTGGGGTGTAGGGTTGGATAGGTCGATTATATCCCCA
81934108 CATGTTGGAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.16, C:0.14, G:0.35, T:0.35
Consensus pattern (40 bp):
TTGGGGTGTAGGGTTGGATAGGTCGATTATATCCCCATAC
Found at i:81939872 original size:40 final size:40
Alignment explanation
Indices: 81939710--81939877 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
81939700 TCTTCGGAAT
* * *
81939710 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * * ** * *
81939749 TTAACCCAGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
81939789 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
81939829 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
81939869 TTAGCCCGG
1 TTAGCCCGG
81939878 GTATCATTCA
Statistics
Matches: 104, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
39 3 0.03
40 100 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:81958483 original size:42 final size:42
Alignment explanation
Indices: 81958437--81958522 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
81958427 TAACATTCAT
81958437 ATGGCTAAATGAATAACTTCATATATGCACATTCTCATAATC
1 ATGGCTAAATGAATAACTTCATATATGCACATTCTCATAATC
81958479 ATGGCTAAATGAATAACTTCATATATGCACATTCTCATAATC
1 ATGGCTAAATGAATAACTTCATATATGCACATTCTCATAATC
81958521 AT
1 AT
81958523 ACTTACTTCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (42 bp):
ATGGCTAAATGAATAACTTCATATATGCACATTCTCATAATC
Found at i:81958800 original size:40 final size:40
Alignment explanation
Indices: 81958730--81958890 Score: 177
Period size: 40 Copynumber: 4.0 Consensus size: 40
81958720 ACCCAAGTAT
* *
81958730 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCGCAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
81958769 CTTCGGGTCTTAGCCCGAATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
81958809 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * *
81958849 CTTCAGGACATAGACCGGATATAGCAACTCGCA-ACAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACA-AATGC
81958889 CT
1 CT
81958891 CGACTTTTCC
Statistics
Matches: 104, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 14 0.13
40 87 0.84
41 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:81959064 original size:40 final size:40
Alignment explanation
Indices: 81958995--81959171 Score: 189
Period size: 40 Copynumber: 4.5 Consensus size: 40
81958985 ACCCAAGTAT
* *
81958995 CTTCGGGAT-TTAG-CCAGATATAACAACTCGCGCAAATGC
1 CTTCGGG-TCTTAGCCCAGATATAGCAACTCGCACAAATGC
* *
81959034 CTTCGGGTCTTAGCCCGGATATAGCAACTCGGACAAATGC
1 CTTCGGGTCTTAGCCCAGATATAGCAACTCGCACAAATGC
* * * *
81959074 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCAGATAT-AGCAACTCGCACAAATGC
* * * *
81959114 CTTCGGGACATAGACCAGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCAGATATAGCAACTCGCACAAATGC
* *
81959154 CTTCGGATCTTAGTCCAG
1 CTTCGGGTCTTAGCCCAG
81959172 TTATCATCCG
Statistics
Matches: 114, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 98 0.86
41 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCAGATATAGCAACTCGCACAAATGC
Found at i:81959098 original size:265 final size:265
Alignment explanation
Indices: 81958625--81959155 Score: 940
Period size: 265 Copynumber: 2.0 Consensus size: 265
81958615 TTAAAACGAA
* * **
81958625 TCGACTTTTCCGATGCATATACGAAACATACCTTATCGTTTGGATTTTATGAGCGTATTAATTGA
1 TCGACTTTTCCGATGCATATACGAAACATACCTTATCATTTGGATTTTATGAGCGTAATAATAAA
* *
81958690 AATTATCACAGCAAGATCGCTCACTTCCAAACCCAAGTATCTTCGGGATTTAGCCGGATATAACA
66 AATAATCACAGCAAGATCGCTCACTTCCAAACCCAAGTATCTTCGGGATTTAGCCAGATATAACA
81958755 ACTCGCGCAAATGCCTTCGGGTCTTAGCCCGAATATAGCAACTCGCACAAATGCCTTCGGGTCTT
131 ACTCGCGCAAATGCCTTCGGGTCTTAGCCCGAATATAGCAACTCGCACAAATGCCTTCGGGTCTT
*
81958820 AGCCCGGATATAATCACTAGCATAAATGCCTTCAGGACATAGACCGGATATAGCAACTCGCAAC-
196 AGCCCGGATATAATCACTAGCATAAATGCCTTCAGGACATAGACCAGATATAGCAACTCGC-ACG
81958884 AATGCC
260 AATGCC
81958890 TCGACTTTTCCGATGCATAT-CGAAACATACCTTATCATTTGGATTTTATGAGCGTAATAATAAA
1 TCGACTTTTCCGATGCATATACGAAACATACCTTATCATTTGGATTTTATGAGCGTAATAAT-AA
81958954 AAATAATCACAGCAAGATCGCTCACTTCCAAACCCAAGTATCTTCGGGATTTAGCCAGATATAAC
65 AAATAATCACAGCAAGATCGCTCACTTCCAAACCCAAGTATCTTCGGGATTTAGCCAGATATAAC
* *
81959019 AACTCGCGCAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGGACAAATGCCTTCGGGTCT
130 AACTCGCGCAAATGCCTTCGGGTCTTAGCCCGAATATAGCAACTCGCACAAATGCCTTCGGGTCT
*
81959084 TAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGACCAGATATAGCAACTCGCACG
195 TAGCCCGGATATAATCACTAGCATAAATGCCTTCAGGACATAGACCAGATATAGCAACTCGCACG
81959149 AATGCC
260 AATGCC
81959155 T
1 T
81959156 TCGGATCTTA
Statistics
Matches: 254, Mismatches: 10, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
264 41 0.16
265 213 0.84
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (265 bp):
TCGACTTTTCCGATGCATATACGAAACATACCTTATCATTTGGATTTTATGAGCGTAATAATAAA
AATAATCACAGCAAGATCGCTCACTTCCAAACCCAAGTATCTTCGGGATTTAGCCAGATATAACA
ACTCGCGCAAATGCCTTCGGGTCTTAGCCCGAATATAGCAACTCGCACAAATGCCTTCGGGTCTT
AGCCCGGATATAATCACTAGCATAAATGCCTTCAGGACATAGACCAGATATAGCAACTCGCACGA
ATGCC
Found at i:81962288 original size:46 final size:46
Alignment explanation
Indices: 81962235--81962328 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
81962225 TTTAGCTGTT
*
81962235 TAGATGCATAAGCTGTTACTTTACCTTCTTGCATCAATACACAACC
1 TAGATGCATAAGCTATTACTTTACCTTCTTGCATCAATACACAACC
81962281 TAGATGCATAAGCTATTACTTTACCTTCTTGCATCAATACACAACC
1 TAGATGCATAAGCTATTACTTTACCTTCTTGCATCAATACACAACC
81962327 TA
1 TA
81962329 AAACATTCAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.33
Consensus pattern (46 bp):
TAGATGCATAAGCTATTACTTTACCTTCTTGCATCAATACACAACC
Found at i:81966229 original size:25 final size:25
Alignment explanation
Indices: 81966196--81966243 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
81966186 TTATAATATG
* * *
81966196 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
81966221 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
81966244 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:81966305 original size:20 final size:20
Alignment explanation
Indices: 81966280--81966342 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
81966270 ATTTTGATAA
*
81966280 ACATGATATGTATGGTATGC
1 ACATGATATGTATGATATGC
81966300 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
81966320 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
81966340 ACA
1 ACA
81966343 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:81966508 original size:69 final size:71
Alignment explanation
Indices: 81966396--81966585 Score: 289
Period size: 69 Copynumber: 2.7 Consensus size: 71
81966386 GAGGAAGTGC
81966396 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATATAAAGGGCTTATGCCCCA
81966460 GTTATT
66 GTTATT
*
81966466 -AAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT-ATAAAGGGCTTATGCCCC
*
81966530 AGTTGTT
65 AGTTATT
*
81966537 AAAAGGGCTT-TGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAAGGGCTTATGCCCCAGTTATT-AAAG-GGCTTATGCC-CCAGTTATAT
81966586 GATAAAGCAG
Statistics
Matches: 110, Mismatches: 4, Indels: 10
0.89 0.03 0.08
Matches are distributed among these distances:
69 44 0.40
71 35 0.32
72 20 0.18
73 11 0.10
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATATAAAGGGCTTATGCCCCA
GTTATT
Found at i:81966564 original size:23 final size:23
Alignment explanation
Indices: 81966397--81966562 Score: 280
Period size: 23 Copynumber: 7.1 Consensus size: 23
81966387 AGGAAGTGCA
81966397 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
81966420 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
81966443 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
81966466 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
81966489 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT--T
*
81966514 AAAGGGCTTATGCCCCAGTTGTT
1 AAAGGGCTTATGCCCCAGTTATT
81966537 AAAAGGGCTT-TGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
81966560 AAA
1 AAA
81966563 AGAGGCTAGG
Statistics
Matches: 136, Mismatches: 4, Indels: 7
0.93 0.03 0.05
Matches are distributed among these distances:
22 3 0.02
23 102 0.75
24 9 0.07
25 22 0.16
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:81966813 original size:31 final size:31
Alignment explanation
Indices: 81966778--81966842 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
81966768 CGTTTACAGT
81966778 AAAGGCTTCGGCCCAATAATATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
* **
81966809 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
81966840 AAA
1 AAA
81966843 AGGGCTATGG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.40, C:0.15, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATAATATGAAATATGA
Found at i:81972963 original size:38 final size:38
Alignment explanation
Indices: 81972915--81973190 Score: 435
Period size: 38 Copynumber: 7.3 Consensus size: 38
81972905 GGCTCAAAGG
* * *
81972915 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
81972953 CCCGGATATAATACCAGCACGAAGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
81972991 CCCGGATATATTACCAGCACGAAGCCTGCAGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
81973029 TCCGGATATAATATCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
81973067 CCCGGATATAATACCAGCGCGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
81973105 CCCGAACATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
81973143 CCCGGATATAATACCATCACGAAGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
81973181 CCCGGATATA
1 CCCGGATATA
81973191 CATCAAATAT
Statistics
Matches: 217, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 217 1.00
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:81974553 original size:2 final size:2
Alignment explanation
Indices: 81974541--81974569 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
81974531 CACTTTCAAA
81974541 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81974570 TCGACATTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:81979108 original size:17 final size:17
Alignment explanation
Indices: 81979086--81979121 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
81979076 GGATTTAGCA
81979086 TGGACTAGTAATCCTGC
1 TGGACTAGTAATCCTGC
81979103 TGGACTAGTAATCCTGC
1 TGGACTAGTAATCCTGC
81979120 TG
1 TG
81979122 TAAGGATGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (17 bp):
TGGACTAGTAATCCTGC
Found at i:81979181 original size:21 final size:21
Alignment explanation
Indices: 81979157--81979228 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
81979147 CTTTCTGAAA
81979157 TGAAATGTGTAAGACCATGGT
1 TGAAATGTGTAAGACCATGGT
** * *
81979178 TGAAA-GATACAATGGCAACATGAT
1 TGAAATG-TGTAA--G-ACCATGGT
81979202 ATGAAATGTGTAAGACCATGGT
1 -TGAAATGTGTAAGACCATGGT
81979224 TGAAA
1 TGAAA
81979229 GATACCATGG
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
20 1 0.03
21 13 0.35
22 6 0.16
23 2 0.05
24 6 0.16
25 8 0.22
26 1 0.03
ACGTcount: A:0.40, C:0.10, G:0.25, T:0.25
Consensus pattern (21 bp):
TGAAATGTGTAAGACCATGGT
Found at i:81979207 original size:25 final size:25
Alignment explanation
Indices: 81979178--81979253 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
81979168 AGACCATGGT
81979178 TGAAAGATACAATGGCAACATGATA
1 TGAAAGATACAATGGCAACATGATA
** * *
81979203 TGAAATG-TGTAA--G-ACCATGGT-
1 TGAAA-GATACAATGGCAACATGATA
*
81979224 TGAAAGATACCATGGCAACATGATA
1 TGAAAGATACAATGGCAACATGATA
81979249 TGAAA
1 TGAAA
81979254 TGTGTAAGAC
Statistics
Matches: 36, Mismatches: 9, Indels: 12
0.63 0.16 0.21
Matches are distributed among these distances:
20 1 0.03
21 7 0.19
22 6 0.17
23 2 0.06
24 6 0.17
25 13 0.36
26 1 0.03
ACGTcount: A:0.43, C:0.12, G:0.22, T:0.22
Consensus pattern (25 bp):
TGAAAGATACAATGGCAACATGATA
Found at i:81979208 original size:46 final size:46
Alignment explanation
Indices: 81979156--81979429 Score: 390
Period size: 46 Copynumber: 6.0 Consensus size: 46
81979146 GCTTTCTGAA
* * *
81979156 ATGAAATGTGTAAGACCATGGTTGAAAGATACAATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
81979202 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
81979248 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
81979294 ATAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
81979340 GA-GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 -ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
81979386 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
81979430 TCAAAGATAA
Statistics
Matches: 213, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
45 2 0.01
46 210 0.99
47 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:81981077 original size:43 final size:42
Alignment explanation
Indices: 81981029--81981147 Score: 125
Period size: 42 Copynumber: 2.8 Consensus size: 42
81981019 CTTATGTAGG
* * *
81981029 ATCTCATTTCGATGCCAATAGCCTAGT-TATGGTCTCACATGAA
1 ATCTCATATCAATGCC-ATAGCCCA-TATATGGTCTCACATGAA
* *
81981072 ATCTCATATCAATGCCATATCCCATATATGGTCTTACATGAA
1 ATCTCATATCAATGCCATAGCCCATATATGGTCTCACATGAA
* * *
81981114 ATCTCATAAT-GATGCCATATCCCAGATATGGTCT
1 ATCTCAT-ATCAATGCCATAGCCCATATATGGTCT
81981148 TACACATAGT
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
41 1 0.01
42 50 0.75
43 16 0.24
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (42 bp):
ATCTCATATCAATGCCATAGCCCATATATGGTCTCACATGAA
Found at i:81981111 original size:42 final size:42
Alignment explanation
Indices: 81981056--81981151 Score: 149
Period size: 42 Copynumber: 2.3 Consensus size: 42
81981046 ATAGCCTAGT
* *
81981056 TATGGTCTCACATGAAATCTCAT-ATCAATGCCATATCCCATA
1 TATGGTCTTACATGAAATCTCATAAT-AATGCCATATCCCAGA
*
81981098 TATGGTCTTACATGAAATCTCATAATGATGCCATATCCCAGA
1 TATGGTCTTACATGAAATCTCATAATAATGCCATATCCCAGA
81981140 TATGGTCTTACA
1 TATGGTCTTACA
81981152 CATAGTCTCC
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
42 48 0.96
43 2 0.04
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.32
Consensus pattern (42 bp):
TATGGTCTTACATGAAATCTCATAATAATGCCATATCCCAGA
Found at i:81988509 original size:40 final size:41
Alignment explanation
Indices: 81988425--81988656 Score: 264
Period size: 40 Copynumber: 5.8 Consensus size: 41
81988415 TCGAATGATG
* * *
81988425 TCCGGGCTAATTCCCGAAGGC-TTTGTGCTAAGTGACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
*
81988465 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
81988505 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
81988544 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
81988584 ACCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* * * *
81988624 ACCGGGCTATGTCCCGAAGGCGTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
81988657 AGTTATATCC
Statistics
Matches: 168, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
39 34 0.20
40 124 0.74
41 10 0.06
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:81988680 original size:119 final size:119
Alignment explanation
Indices: 81988433--81988682 Score: 267
Period size: 119 Copynumber: 2.1 Consensus size: 119
81988423 TGTCCGGGCT
*
81988433 AATTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGT
1 AATT-CCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTTGTGCGAGT
* * * *
81988498 TACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTCACTAAATCTGGGTTA
65 TACTAATACCGGGCTAAGCCCGAAGGCATTGGAGCGAGTCACTAAATCTCGGATA
* * * * * *
81988553 AGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTGTGCGAG
1 AATTCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGGCATTTGTGCGAG
* * * * *
81988616 TTACT-ATAACCGGGCTATGTCCCGAAGGCGTTTGAGCGAGT-AGTTATATC-CGGATA
64 TTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAGCGAGTCA-CTAAATCTCGGATA
81988672 AATTCCGAAGG
1 AATTCCGAAGG
81988683 TATGTGATTT
Statistics
Matches: 107, Mismatches: 18, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
118 3 0.03
119 72 0.67
120 32 0.30
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
AATTCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTTGTGCGAGTT
ACTAATACCGGGCTAAGCCCGAAGGCATTGGAGCGAGTCACTAAATCTCGGATA
Found at i:81991822 original size:42 final size:42
Alignment explanation
Indices: 81991743--81991859 Score: 148
Period size: 42 Copynumber: 2.7 Consensus size: 42
81991733 GGATCTTATT
* * *
81991743 TCGATGCCAATAGCCCAACTATGGTCTCACACAAAATCTCA-TA
1 TCGATGCC-ATATCCCAA-TATGGTCTTACACAAAATCTCACAA
*
81991786 TCGATGCCATATCCCATATATGGTCTTACACGAAATCTCACAA
1 TCGATGCCATATCCCA-ATATGGTCTTACACAAAATCTCACAA
81991829 T-GATGCCATATCCCAGATATGGTCTTACACA
1 TCGATGCCATATCCCA-ATATGGTCTTACACA
81991860 TAGTCTCGGT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
42 55 0.83
43 11 0.17
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.26
Consensus pattern (42 bp):
TCGATGCCATATCCCAATATGGTCTTACACAAAATCTCACAA
Found at i:81993210 original size:14 final size:14
Alignment explanation
Indices: 81993171--81993220 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
81993161 TAATAAATTT
*
81993171 ATTATTTAACATAA
1 ATTATTTAATATAA
81993185 ATATAAATTTAATATAA
1 AT-T--ATTTAATATAA
*
81993202 ATTATTTAATATGA
1 ATTATTTAATATAA
81993216 ATTAT
1 ATTAT
81993221 AATTAATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
14 17 0.55
15 1 0.03
16 1 0.03
17 12 0.39
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (14 bp):
ATTATTTAATATAA
Found at i:81993674 original size:3 final size:3
Alignment explanation
Indices: 81993666--81993690 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
81993656 CTTTCAAAGT
81993666 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
81993691 AATTTATGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:81993872 original size:20 final size:22
Alignment explanation
Indices: 81993821--81993880 Score: 72
Period size: 20 Copynumber: 2.9 Consensus size: 22
81993811 TTTTATTTCT
*
81993821 ATAAA-ATTTTGAAATTTTCTA
1 ATAAATATTTTGAAATTTTCGA
81993842 ATAAATATTTTGAAATTTT-GA
1 ATAAATATTTTGAAATTTTCGA
* *
81993863 A-AATTATTTTGAATTTTT
1 ATAAATATTTTGAAATTTT
81993881 ATAATTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
20 15 0.43
21 7 0.20
22 13 0.37
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.52
Consensus pattern (22 bp):
ATAAATATTTTGAAATTTTCGA
Found at i:81993956 original size:17 final size:16
Alignment explanation
Indices: 81993936--81993974 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
81993926 AATTTAAAAT
81993936 ATATTTAAATTAATTTA
1 ATATTTAAATT-ATTTA
*
81993953 ATATTCAAATTATTTA
1 ATATTTAAATTATTTA
81993969 A-ATTTA
1 ATATTTA
81993975 TTAAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 4 0.20
16 6 0.30
17 10 0.50
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATTTAAATTATTTA
Found at i:81993998 original size:18 final size:18
Alignment explanation
Indices: 81993977--81994015 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
81993967 TAAATTTATT
*
81993977 AAAAAAATAAAATAATTC
1 AAAAAAAGAAAATAATTC
**
81993995 AAAATTAGAAAATAATTC
1 AAAAAAAGAAAATAATTC
81994013 AAA
1 AAA
81994016 TAGAATCGAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.23
Consensus pattern (18 bp):
AAAAAAAGAAAATAATTC
Found at i:81994215 original size:2 final size:2
Alignment explanation
Indices: 81994208--81994233 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
81994198 ATCTCTTCAA
81994208 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
81994234 TTCTAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81995441 original size:60 final size:60
Alignment explanation
Indices: 81995362--81995491 Score: 163
Period size: 60 Copynumber: 2.2 Consensus size: 60
81995352 TAAGTTCTGC
* * * ** * * *
81995362 TATTTCCAAAATCTGATGCGCCAAGCATATTATCATATGTGTAATGTCATTTTAGCCTAT
1 TATTTCCACAATCTGATGCGCCAAACATACTATCATATACGTAATGTCATGTCAACCTAT
*
81995422 TATTTCCACAAT-TGGATGCGCCAAACATACTATCATATACGTAATGTCATGTCAACTTAT
1 TATTTCCACAATCT-GATGCGCCAAACATACTATCATATACGTAATGTCATGTCAACCTAT
81995482 TATTTCCACA
1 TATTTCCACA
81995492 TATTACTTAC
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
59 1 0.02
60 59 0.98
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.36
Consensus pattern (60 bp):
TATTTCCACAATCTGATGCGCCAAACATACTATCATATACGTAATGTCATGTCAACCTAT
Found at i:82000341 original size:32 final size:32
Alignment explanation
Indices: 82000296--82000358 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
82000286 TTAAACTTAA
*
82000296 ATCACTTTAATATTAAATT-AATATAATATTT
1 ATCAATTTAATATTAAATTAAATATAATATTT
* *
82000327 ATCAATTTAAATATTAGATTAAATTTAATATT
1 ATCAATTT-AATATTAAATTAAATATAATATT
82000359 AAATCTTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 7 0.26
32 10 0.37
33 10 0.37
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.48
Consensus pattern (32 bp):
ATCAATTTAATATTAAATTAAATATAATATTT
Found at i:82002014 original size:21 final size:21
Alignment explanation
Indices: 82001980--82002023 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
82001970 AAATCTCTAC
*
82001980 AATTTCTCCCTAAAGCTCTCA
1 AATTTCTCACTAAAGCTCTCA
* **
82002001 AATTTCTCATTAAATTTCTCA
1 AATTTCTCACTAAAGCTCTCA
82002022 AA
1 AA
82002024 GCTCTTCATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.25, G:0.02, T:0.39
Consensus pattern (21 bp):
AATTTCTCACTAAAGCTCTCA
Found at i:82002299 original size:54 final size:54
Alignment explanation
Indices: 82002181--82002292 Score: 179
Period size: 54 Copynumber: 2.1 Consensus size: 54
82002171 GGTAAGGTTT
* * ** *
82002181 ATTTTAAATTTTGAATATTATTTAATATTTTTTTCATTTATGTAATTTTAATTC
1 ATTTTAATTTTTGAATACTATTTAATATTTTTTTCATTTACATAATTTTAATTA
82002235 ATTTTAATTTTTGAATACTATTTAATATTTTTTTCATTTACATAATTTTAATTA
1 ATTTTAATTTTTGAATACTATTTAATATTTTTTTCATTTACATAATTTTAATTA
82002289 ATTT
1 ATTT
82002293 GTATTTTATA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (54 bp):
ATTTTAATTTTTGAATACTATTTAATATTTTTTTCATTTACATAATTTTAATTA
Found at i:82003253 original size:14 final size:14
Alignment explanation
Indices: 82003234--82003264 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
82003224 AGTCGTTTCA
*
82003234 TATTTAGTATTTTG
1 TATTTAGTATTATG
82003248 TATTTAGTATTATG
1 TATTTAGTATTATG
82003262 TAT
1 TAT
82003265 ATAACTAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (14 bp):
TATTTAGTATTATG
Found at i:82003791 original size:30 final size:30
Alignment explanation
Indices: 82003750--82003808 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
82003740 TGACGGCACG
*
82003750 GGCCTATCAACAGCACCCACACAATCACCT
1 GGCCCATCAACAGCACCCACACAATCACCT
**
82003780 GGCCCATCAACAGCGTCCACACAATCACC
1 GGCCCATCAACAGCACCCACACAATCACC
82003809 GAGCTCAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.44, G:0.12, T:0.12
Consensus pattern (30 bp):
GGCCCATCAACAGCACCCACACAATCACCT
Found at i:82005539 original size:13 final size:13
Alignment explanation
Indices: 82005521--82005545 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82005511 GTAAGTGATT
82005521 TTGATGATTTTTC
1 TTGATGATTTTTC
82005534 TTGATGATTTTT
1 TTGATGATTTTT
82005546 GCATTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:82007511 original size:28 final size:28
Alignment explanation
Indices: 82007471--82007525 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
82007461 AAGGTTTTTA
*
82007471 GACACGGTCGTGT-CATGGCCGTGTGAGG
1 GACACGGGCGTGTCCA-GGCCGTGTGAGG
82007499 GACACGGGCGTGTGCCAGGCCGTGTGA
1 GACACGGGCGTGT-CCAGGCCGTGTGA
82007526 AAACCCCTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 12 0.50
29 10 0.42
30 2 0.08
ACGTcount: A:0.15, C:0.24, G:0.44, T:0.18
Consensus pattern (28 bp):
GACACGGGCGTGTCCAGGCCGTGTGAGG
Found at i:82011382 original size:18 final size:19
Alignment explanation
Indices: 82011361--82011396 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
82011351 AATAAAGAAA
*
82011361 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
82011379 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
82011397 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:82012248 original size:2 final size:2
Alignment explanation
Indices: 82012241--82012265 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
82012231 CGTGATGCCC
82012241 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
82012266 CATAAGTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:82012785 original size:29 final size:29
Alignment explanation
Indices: 82012743--82012874 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
82012733 AAAATTGTAC
82012743 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
82012772 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
82012801 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATAT
*
82012831 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
82012860 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
82012875 GATTCACTAT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:82012839 original size:59 final size:58
Alignment explanation
Indices: 82012743--82012874 Score: 237
Period size: 59 Copynumber: 2.3 Consensus size: 58
82012733 AAAATTGTAC
82012743 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
* *
82012801 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAACTGAAAATATAT
82012860 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
82012875 GATTCACTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 23 0.32
59 48 0.68
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:82012863 original size:88 final size:89
Alignment explanation
Indices: 82012713--82012874 Score: 263
Period size: 88 Copynumber: 1.8 Consensus size: 89
82012703 GACAAGATTG
* * *
82012713 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
82012778 AAGTGTGCGAACTGAAAATATATA
66 AAGTGTGCGAACTGAAAATATATA
* * *
82012802 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
82012866 AAGTGTGCG
66 AAGTGTGCG
82012875 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 52 0.78
89 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAACTGAAAATATATA
Found at i:82017278 original size:21 final size:18
Alignment explanation
Indices: 82017249--82017301 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 18
82017239 CGTTTAAACA
*
82017249 TTTTGTTTCTTTCATTCTCT
1 TTTTTTTTCTTT-ATT-TCT
82017269 TTTTCTTTTCTTTATTTCT
1 TTTT-TTTTCTTTATTTCT
82017288 TTTTTTTTCATTTA
1 TTTTTTTTC-TTTA
82017302 CTTTTATGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 5 0.17
19 11 0.37
20 7 0.23
21 7 0.23
ACGTcount: A:0.08, C:0.15, G:0.02, T:0.75
Consensus pattern (18 bp):
TTTTTTTTCTTTATTTCT
Found at i:82017530 original size:24 final size:25
Alignment explanation
Indices: 82017493--82017540 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
82017483 AATAAGTAAA
82017493 TACATACATGTATTACAAATGTATG
1 TACATACATGTATTACAAATGTATG
* *
82017518 TACA-ACATTTATTACACATGTAT
1 TACATACATGTATTACAAATGTAT
82017541 TTTATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.38
Consensus pattern (25 bp):
TACATACATGTATTACAAATGTATG
Found at i:82019472 original size:13 final size:14
Alignment explanation
Indices: 82019440--82019473 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
82019430 ACAATGAAGT
82019440 ACATTAAGTAATGCA
1 ACATTAAGTAAT-CA
82019455 ACATTAAGTAAT-A
1 ACATTAAGTAATCA
82019468 ACATTA
1 ACATTA
82019474 TTATTCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.37
15 12 0.63
ACGTcount: A:0.50, C:0.12, G:0.09, T:0.29
Consensus pattern (14 bp):
ACATTAAGTAATCA
Found at i:82020968 original size:125 final size:126
Alignment explanation
Indices: 82020746--82021038 Score: 489
Period size: 125 Copynumber: 2.3 Consensus size: 126
82020736 GGCCAAGCAT
* *
82020746 GAACTACTGTAGAAAAAGAGTGTCCACGTGGGAGCTTTTTTCAGAAATTTTGATGACATTGCATC
1 GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGATGACATTGCATC
* * *
82020811 TTGTTTGAAGCGTTTTTGACACTATTTGTTTAGAAACATCTTCTTAAAATTA-TTTTTTAG
66 CTGTTTGAAGCGTTTTTGACACTATTTATTTAGAAACATCTTCTCAAAATTATTTTTTTAG
* *
82020871 GAACTACTGTAGCAAAAGAACGTCCATGTGGGAGCTTTTTTCAGAAATTTTGATGACATTGCATC
1 GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGATGACATTGCATC
*
82020936 CTGTTTGAAGCGTTTTTGACACTATTTATTTAGAAACGTCTTCTCAAAATTATTTTTTTAG
66 CTGTTTGAAGCGTTTTTGACACTATTTATTTAGAAACATCTTCTCAAAATTATTTTTTTAG
* *
82020997 GAACTACTGTAGCAAAAGAGCATCCACGTGGTAGCTTTTTTC
1 GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTC
82021039 TGTATTTTTG
Statistics
Matches: 155, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
125 109 0.70
126 46 0.30
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (126 bp):
GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGATGACATTGCATC
CTGTTTGAAGCGTTTTTGACACTATTTATTTAGAAACATCTTCTCAAAATTATTTTTTTAG
Found at i:82021126 original size:94 final size:95
Alignment explanation
Indices: 82020948--82021142 Score: 329
Period size: 94 Copynumber: 2.1 Consensus size: 95
82020938 GTTTGAAGCG
* * *
82020948 TTTTTGACACTATTTATTTAGAAACGTCTTCTCAAAATTATTTTTTTAGGAACTACTGTAGCAAA
1 TTTTTGACACTATTTATTCAGAAACGTCTTCTCAAAATTATTTTTTCAGGAACTAATGTAGCAAA
*
82021013 AGAGCATCCACGTGGTAGCTTTTTTCTGTA
66 AGAGCATCCACGTGGTAGCTTTTTTCTATA
*
82021043 TTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTA-TTTTTCAGGAACTAATGTAGCAAA
1 TTTTTGACACTATTTATTCAGAAACGTCTTCTCAAAATTATTTTTTCAGGAACTAATGTAGCAAA
*
82021107 AGATCATCCACGTGGTAGCTTTTTTCTATA
66 AGAGCATCCACGTGGTAGCTTTTTTCTATA
82021137 TTTTTG
1 TTTTTG
82021143 TTGACAGTGT
Statistics
Matches: 94, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
94 56 0.60
95 38 0.40
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (95 bp):
TTTTTGACACTATTTATTCAGAAACGTCTTCTCAAAATTATTTTTTCAGGAACTAATGTAGCAAA
AGAGCATCCACGTGGTAGCTTTTTTCTATA
Found at i:82021334 original size:30 final size:29
Alignment explanation
Indices: 82021259--82021483 Score: 83
Period size: 29 Copynumber: 7.6 Consensus size: 29
82021249 TAACACGATA
**
82021259 CCTAATTTAATTAAT-TTTAACCCAAAAC
1 CCTAATTTAATTAATCTAAAACCCAAAAC
* * *
82021287 CCTAATGTAATTTATCTAAAACCCTAGAAC
1 CCTAATTTAATTAATCTAAAACCC-AAAAC
* **
82021317 CCTAATTTACTTAATCTATTTAAAAATCATAAAC
1 CCTAATTTAATTAATC----TAAAACCCA-AAAC
**
82021351 CCTAATTTAATT-AT-T------TTAAAC
1 CCTAATTTAATTAATCTAAAACCCAAAAC
* * *
82021372 CCTAATTTAATTTATCTAAAACCTTAGAAC
1 CCTAATTTAATTAATCTAAAACC-CAAAAC
* *
82021402 CCTAATTTACTTAATTTTAACCCAAAACCCAAAAC
1 CCTAA--T--TTAA--TTAATCTAAAACCCAAAAC
* * *
82021437 CTTAATTTAATTTATCT-AAACCCTAGAAC
1 CCTAATTTAATTAATCTAAAACCC-AAAAC
*
82021466 CCTAATTTACTTAATCTA
1 CCTAATTTAATTAATCTA
82021484 TTCAAAAACC
Statistics
Matches: 144, Mismatches: 29, Indels: 46
0.66 0.13 0.21
Matches are distributed among these distances:
21 16 0.11
22 2 0.01
23 1 0.01
28 20 0.14
29 28 0.19
30 26 0.18
31 4 0.03
32 1 0.01
33 4 0.03
34 24 0.17
35 8 0.06
36 10 0.07
ACGTcount: A:0.40, C:0.21, G:0.02, T:0.36
Consensus pattern (29 bp):
CCTAATTTAATTAATCTAAAACCCAAAAC
Found at i:82021360 original size:21 final size:21
Alignment explanation
Indices: 82021334--82021381 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
82021324 TACTTAATCT
82021334 ATTTAAAAATCATAAACCCTA
1 ATTTAAAAATCATAAACCCTA
** **
82021355 ATTTAATTATTTTAAACCCTA
1 ATTTAAAAATCATAAACCCTA
82021376 ATTTAA
1 ATTTAA
82021382 TTTATCTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.40
Consensus pattern (21 bp):
ATTTAAAAATCATAAACCCTA
Found at i:82021393 original size:22 final size:21
Alignment explanation
Indices: 82021347--82021394 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
82021337 TAAAAATCAT
* *
82021347 AAACCCTAATTTAATTATTTT
1 AAACCCTAATTTAATTATCTA
82021368 AAACCCTAATTTAATTTATCTA
1 AAACCCTAATTTAA-TTATCTA
82021390 AAACC
1 AAACC
82021395 TTAGAACCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 14 0.58
22 10 0.42
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.40
Consensus pattern (21 bp):
AAACCCTAATTTAATTATCTA
Found at i:82021471 original size:29 final size:29
Alignment explanation
Indices: 82021369--82021483 Score: 88
Period size: 29 Copynumber: 3.7 Consensus size: 29
82021359 AATTATTTTA
*
82021369 AACCCTAATTTAATTTATCTAAAACCTTAG
1 AACCCTAATTTAATTTATCT-AAACCCTAG
* * *
82021399 AACCCTAATTTACTTAATTTTAACCCAAAACCC-AA
1 AACCCTAA--T--TTAA-TTT-A-TCTAAACCCTAG
*
82021434 AACCTTAATTTAATTTATCTAAACCCTAG
1 AACCCTAATTTAATTTATCTAAACCCTAG
* *
82021463 AACCCTAATTTACTTAATCTA
1 AACCCTAATTTAATTTATCTA
82021484 TTCAAAAACC
Statistics
Matches: 66, Mismatches: 11, Indels: 17
0.70 0.12 0.18
Matches are distributed among these distances:
28 7 0.11
29 20 0.30
30 11 0.17
31 4 0.06
32 1 0.02
33 1 0.02
34 4 0.06
35 11 0.17
36 6 0.09
37 1 0.02
ACGTcount: A:0.40, C:0.23, G:0.02, T:0.35
Consensus pattern (29 bp):
AACCCTAATTTAATTTATCTAAACCCTAG
Found at i:82021509 original size:149 final size:151
Alignment explanation
Indices: 82021277--82021566 Score: 494
Period size: 150 Copynumber: 1.9 Consensus size: 151
82021267 AATTAATTTT
*
82021277 AACCCAAAACCCTAATGTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAA
1 AACCCAAAACCCTAATGTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTCAAAA
* *
82021342 ATCATAAACCCTAATTTAA-TTATTTTAAACCCTAATTTAATTTATCTAAAACCTTAGAACCCTA
66 ACCATAAACCCTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTA
82021406 ATTTACTTAATTTTAACCCAA
131 ATTTACTTAATTTTAACCCAA
* *
82021427 AACCCAAAACCTTAATTTAATTTATCT-AAACCCTAGAACCCTAATTTACTTAATCTATTCAAAA
1 AACCCAAAACCCTAATGTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTCAAAA
* * *
82021491 ACCATAAACTCTAGTTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACTCTA
66 ACCATAAACCCTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTA
82021556 ATTTACTTAAT
131 ATTTACTTAAT
82021567 CTATTTAAAA
Statistics
Matches: 131, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
149 52 0.40
150 79 0.60
ACGTcount: A:0.41, C:0.21, G:0.02, T:0.36
Consensus pattern (151 bp):
AACCCAAAACCCTAATGTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTCAAAA
ACCATAAACCCTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTA
ATTTACTTAATTTTAACCCAA
Found at i:82021520 original size:22 final size:22
Alignment explanation
Indices: 82021495--82021719 Score: 83
Period size: 22 Copynumber: 10.4 Consensus size: 22
82021485 TCAAAAACCA
* *
82021495 TAAACTCTAGTTTAATTTATTT
1 TAAACCCTAATTTAATTTATTT
*
82021517 TAAACCCTAATTTAATTTATCT
1 TAAACCCTAATTTAATTTATTT
* * *
82021539 AAAACCCTAGAACTCTAATTTA-CT
1 TAAACCCT--AA-TTTAATTTATTT
* ** ***
82021563 T-AA-TCT-ATTTAA-AAACCA
1 TAAACCCTAATTTAATTTATTT
*
82021581 TAAACTCTAATTTAATTTATTT
1 TAAACCCTAATTTAATTTATTT
*
82021603 TAAACCCTAATTTAATTTATCT
1 TAAACCCTAATTTAATTTATTT
* ** *
82021625 AAAACCCTAGAACCCTAATTTA-CT
1 TAAACCCT--AA-TTTAATTTATTT
* ** **
82021649 T-AA-TCT-ATTTAA-AAATCA
1 TAAACCCTAATTTAATTTATTT
*
82021667 TAAACTCTAATTTAATTTATTT
1 TAAACCCTAATTTAATTTATTT
* *
82021689 TAAACCCTGATTTAATTTATCT
1 TAAACCCTAATTTAATTTATTT
*
82021711 AAAACCCTA
1 TAAACCCTA
82021720 GAACCCTAAT
Statistics
Matches: 150, Mismatches: 37, Indels: 32
0.68 0.17 0.15
Matches are distributed among these distances:
17 2 0.01
18 11 0.07
19 6 0.04
20 6 0.04
21 12 0.08
22 86 0.57
23 4 0.03
24 8 0.05
25 15 0.10
ACGTcount: A:0.40, C:0.17, G:0.02, T:0.41
Consensus pattern (22 bp):
TAAACCCTAATTTAATTTATTT
Found at i:82021521 original size:64 final size:65
Alignment explanation
Indices: 82021367--82021525 Score: 182
Period size: 64 Copynumber: 2.5 Consensus size: 65
82021357 TTAATTATTT
* * * * *
82021367 TAAACCCTAATTTAATTTATCTAAAACCTTAGAACCCTAATTTACTTAATTTTAACCCAAAACCC
1 TAAA-CCTAATTTAATTTATTTTAAACCCTAGAACCCTAATTTACTTAATTCTAACCCAAAAACC
82021432 A
65 A
* **
82021433 -AAACCTTAATTTAATTTA-TCTAAACCCTAGAACCCTAATTTACTTAA-TCT-ATTCAAAAACC
1 TAAACC-TAATTTAATTTATTTTAAACCCTAGAACCCTAATTTACTTAATTCTAACCCAAAAACC
82021494 A
65 A
*
82021495 TAAACTCTAGTTTAATTTATTTTAAACCCTA
1 TAAAC-CTAATTTAATTTATTTTAAACCCTA
82021526 ATTTAATTTA
Statistics
Matches: 79, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
62 9 0.11
63 17 0.22
64 38 0.48
65 15 0.19
ACGTcount: A:0.40, C:0.22, G:0.02, T:0.36
Consensus pattern (65 bp):
TAAACCTAATTTAATTTATTTTAAACCCTAGAACCCTAATTTACTTAATTCTAACCCAAAAACCA
Found at i:82021557 original size:30 final size:30
Alignment explanation
Indices: 82021519--82021741 Score: 95
Period size: 30 Copynumber: 7.7 Consensus size: 30
82021509 ATTTATTTTA
82021519 AACCCTAATTTAATTTATCTAAAACCCTAG
1 AACCCTAATTTAATTTATCTAAAACCCTAG
* * * *
82021549 AACTCTAATTTACTTAATCTATTTAAAAACCATA-
1 AACCCTAA--T--TTAATTTATCT-AAAACCCTAG
* *
82021583 AACTCTAATTTAATTTAT-T------TTA-
1 AACCCTAATTTAATTTATCTAAAACCCTAG
82021605 AACCCTAATTTAATTTATCTAAAACCCTAG
1 AACCCTAATTTAATTTATCTAAAACCCTAG
* * * *
82021635 AACCCTAATTTACTTAATCTATTTAAAAATCATA-
1 AACCCTAA--T--TTAATTTATCT-AAAACCCTAG
* *
82021669 AACTCTAATTTAATTTAT-T------TTA-
1 AACCCTAATTTAATTTATCTAAAACCCTAG
*
82021691 AACCCTGATTTAATTTATCTAAAACCCTAG
1 AACCCTAATTTAATTTATCTAAAACCCTAG
* *
82021721 AACCCTAATTTACTTAATCTA
1 AACCCTAATTTAATTTATCTA
82021742 TTTAAAAACC
Statistics
Matches: 146, Mismatches: 21, Indels: 52
0.67 0.10 0.24
Matches are distributed among these distances:
22 37 0.25
23 2 0.01
29 6 0.04
30 49 0.34
32 4 0.03
34 33 0.23
35 15 0.10
ACGTcount: A:0.40, C:0.19, G:0.02, T:0.39
Consensus pattern (30 bp):
AACCCTAATTTAATTTATCTAAAACCCTAG
Found at i:82021576 original size:34 final size:34
Alignment explanation
Indices: 82021528--82021594 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
82021518 AAACCCTAAT
* *
82021528 TTAATTTATCT-AAAACCCTAGAACTCTAATTTAC
1 TTAATCTATCTAAAAACCATA-AACTCTAATTTAC
*
82021562 TTAATCTATTTAAAAACCATAAACTCTAATTTA
1 TTAATCTATCTAAAAACCATAAACTCTAATTTA
82021595 ATTTATTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 21 0.72
35 8 0.28
ACGTcount: A:0.42, C:0.18, G:0.01, T:0.39
Consensus pattern (34 bp):
TTAATCTATCTAAAAACCATAAACTCTAATTTAC
Found at i:82021748 original size:34 final size:34
Alignment explanation
Indices: 82021700--82021765 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
82021690 AAACCCTGAT
* *
82021700 TTAATTTATCT-AAAACCCTAGAACCCTAATTTAC
1 TTAATCTATCTAAAAACCATA-AACCCTAATTTAC
*
82021734 TTAATCTATTTAAAAACCATAAACCCTAATTT
1 TTAATCTATCTAAAAACCATAAACCCTAATTT
82021766 GATTTATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 20 0.71
35 8 0.29
ACGTcount: A:0.41, C:0.21, G:0.02, T:0.36
Consensus pattern (34 bp):
TTAATCTATCTAAAAACCATAAACCCTAATTTAC
Found at i:82021778 original size:22 final size:22
Alignment explanation
Indices: 82021753--82021794 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
82021743 TTAAAAACCA
82021753 TAAACCCTAATTTGATTTATTT
1 TAAACCCTAATTTGATTTATTT
* *
82021775 TAAACTCTGATTTGATTTAT
1 TAAACCCTAATTTGATTTAT
82021795 CTAAAATCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.12, G:0.07, T:0.50
Consensus pattern (22 bp):
TAAACCCTAATTTGATTTATTT
Found at i:82021837 original size:86 final size:86
Alignment explanation
Indices: 82021433--82021823 Score: 642
Period size: 86 Copynumber: 4.6 Consensus size: 86
82021423 CCAAAACCCA
* *
82021433 AAACCTTAATTTAATTTATCT-AAACCCTAGAACCCTAATTTACTTAATCTATTCAAAAACCATA
1 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
*
82021497 AACTCTAGTTTAATTTATTTT
66 AACTCTAATTTAATTTATTTT
*
82021518 AAACCCTAATTTAATTTATCTAAAACCCTAGAACTCTAATTTACTTAATCTATTTAAAAACCATA
1 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
82021583 AACTCTAATTTAATTTATTTT
66 AACTCTAATTTAATTTATTTT
*
82021604 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAATCATA
1 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
82021669 AACTCTAATTTAATTTATTTT
66 AACTCTAATTTAATTTATTTT
*
82021690 AAACCCTGATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
1 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
* *
82021755 AACCCTAATTTGATTTATTTT
66 AACTCTAATTTAATTTATTTT
* * * * * *
82021776 AAACTCTGATTTGATTTATCTAAAA-TCTAAAACCCTAATTTAATTAAT
1 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAAT
82021824 TTTAACCAAA
Statistics
Matches: 290, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
85 40 0.14
86 250 0.86
ACGTcount: A:0.40, C:0.18, G:0.02, T:0.40
Consensus pattern (86 bp):
AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
AACTCTAATTTAATTTATTTT
Found at i:82021853 original size:143 final size:144
Alignment explanation
Indices: 82021698--82021969 Score: 422
Period size: 143 Copynumber: 1.9 Consensus size: 144
82021688 TTAAACCCTG
* * *
82021698 ATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATAAACCCTAA
1 ATTTAATTTATCTAAAACCCTAAAACCCAAATTTACTTAATCTATTTAAAAACCATAAACCATAA
* * * *
82021763 TTTGA-TTTATTTTAAACTCTGATTTGATTTATCTAAAA-TCTAAAACCCTAATTTAATTAATTT
66 TTT-ATTTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAAAACCCTAATTTAATTAATTT
82021826 TAACCAAAAACCCAA
130 TAACCAAAAACCCAA
* *
82021841 ATTTAATTTATCTAAAACTCTAAAACCCAAATTTACTTAATCTATTTAAAAATCATAAACCATAA
1 ATTTAATTTATCTAAAACCCTAAAACCCAAATTTACTTAATCTATTTAAAAACCATAAACCATAA
* *
82021906 TTTATTTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATTT
66 TTTATTTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAAAACCCTAATTTAATTAATTT
82021970 ATTTAAAAAC
Statistics
Matches: 116, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
142 1 0.01
143 93 0.80
144 22 0.19
ACGTcount: A:0.41, C:0.18, G:0.02, T:0.39
Consensus pattern (144 bp):
ATTTAATTTATCTAAAACCCTAAAACCCAAATTTACTTAATCTATTTAAAAACCATAAACCATAA
TTTATTTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAAAACCCTAATTTAATTAATTTT
AACCAAAAACCCAA
Found at i:82021868 original size:30 final size:30
Alignment explanation
Indices: 82021784--82021884 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 30
82021774 TTAAACTCTG
* * *
82021784 ATTTGATTTATCTAAAA-TCTAAAACCCTA
1 ATTTAATTAATCTAAAACTCTAAAACCCAA
** *
82021813 ATTTAATTAAT-TTTAAC-CAAAAACCCAA
1 ATTTAATTAATCTAAAACTCTAAAACCCAA
*
82021841 ATTTAATTTATCTAAAACTCTAAAACCCAA
1 ATTTAATTAATCTAAAACTCTAAAACCCAA
*
82021871 ATTTACTTAATCTA
1 ATTTAATTAATCTA
82021885 TTTAAAAATC
Statistics
Matches: 57, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
28 22 0.39
29 13 0.23
30 22 0.39
ACGTcount: A:0.45, C:0.18, G:0.01, T:0.37
Consensus pattern (30 bp):
ATTTAATTAATCTAAAACTCTAAAACCCAA
Found at i:82021888 original size:229 final size:230
Alignment explanation
Indices: 82021604--82022053 Score: 751
Period size: 229 Copynumber: 2.0 Consensus size: 230
82021594 AATTTATTTT
* * *
82021604 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAATCATA
1 AAACCCAAATTTAATTTATCTAAAACCCTAAAACCCAAATTTACTTAATCTATTTAAAAATCATA
*
82021669 AACTC-TAATTTAATTTATTTTAAACCCTGATTTAATTTATCTAAAACCCTAGAACCCTAATTTA
66 AAC-CATAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTA
* * *
82021733 CTTAATCTATTTAAAAACCATAAACCCTAATTTGATTTATTTTAAACTCTGATTTGATTTATCTA
130 CTTAATCTATTTAAAAACCATAAACCCTAATTTAATTTATTTTAAACTCTAATTTAATTTATCTA
82021798 AAA-TCTAAAACCCTAATTTAATTAATTTTAACCAA
195 AAACTCTAAAACCCTAATTTAATTAATTTTAACCAA
*
82021833 AAACCCAAATTTAATTTATCTAAAACTCTAAAACCCAAATTTACTTAATCTATTTAAAAATCATA
1 AAACCCAAATTTAATTTATCTAAAACCCTAAAACCCAAATTTACTTAATCTATTTAAAAATCATA
*
82021898 AACCATAATTTATTTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTAC
66 AACCATAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTAC
* * *
82021963 TTAATTTATTTAAAAACCATAAATCCTAATTTAATTTATTTTAAACTCTAATTTAATTTATTTAA
131 TTAATCTATTTAAAAACCATAAACCCTAATTTAATTTATTTTAAACTCTAATTTAATTTATCTAA
* *
82022028 AACTCTAGAACCCTAATTTACTTAAT
196 AACTCTAAAACCCTAATTTAATTAAT
82022054 CTATTTAAAA
Statistics
Matches: 205, Mismatches: 14, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
228 1 0.00
229 183 0.89
230 21 0.10
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.40
Consensus pattern (230 bp):
AAACCCAAATTTAATTTATCTAAAACCCTAAAACCCAAATTTACTTAATCTATTTAAAAATCATA
AACCATAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTAC
TTAATCTATTTAAAAACCATAAACCCTAATTTAATTTATTTTAAACTCTAATTTAATTTATCTAA
AACTCTAAAACCCTAATTTAATTAATTTTAACCAA
Found at i:82021928 original size:22 final size:22
Alignment explanation
Indices: 82021896--82021948 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
82021886 TTAAAAATCA
* * *
82021896 TAAACCATAATTTATTTTATTT
1 TAAACCCTAATTTAATTTATCT
82021918 TAAACCCTAATTTAATTTATCT
1 TAAACCCTAATTTAATTTATCT
*
82021940 AAAACCCTA
1 TAAACCCTA
82021949 GAACCCTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (22 bp):
TAAACCCTAATTTAATTTATCT
Found at i:82021932 original size:315 final size:319
Alignment explanation
Indices: 82021283--82022082 Score: 1097
Period size: 315 Copynumber: 2.5 Consensus size: 319
82021273 TTTTAACCCA
*
82021283 AAACCCTAATGTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAATCATA
1 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAATCATA
* *
82021348 AACCCTAATTTAA-TTATTTTAAACCCTAATTTAATTTATCTAAAACCTTAGAACCCTAATTTAC
66 AACTCTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTAC
*
82021412 TTAAT-T-TTAACCCAAAACCCA-AAACCTTAATTTAATTTATCTAAACCCTAGAACCCTAATTT
131 TTAATCTATTTA---AAAA-CCATAAACCTTAATTTAATTTATCTAAACCCTAGAACCCTAATTT
* * **** *
82021474 ACTTAATCTATTCAAAAACCATAAACTCTAGTTTAATTTATTTTAAACCCTAATTTAATTTATCT
192 ACTTAA--TAATCAAAAACCATAAACTCTAGATTAATTTACCAAAAACCCAAATTTAATTTATCT
* * *
82021539 AAAACCCTAGAACTCTAATTTACTTAATCTATTTAAAAACCATAAACTCTAATTTAATTTATTTT
255 AAAACCCTAAAACCCAAATTTACTTAATCTATTTAAAAACCATAAACTCTAATTTAATTTATTTT
82021604 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAATCATA
1 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAATCATA
*
82021669 AACTCTAATTTAATTTATTTTAAACCCTGATTTAATTTATCTAAAACCCTAGAACCCTAATTTAC
66 AACTCTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTAC
* * * * ** *
82021734 TTAATCTATTTAAAAACCATAAACCCTAATTTGATTTATTTTAAACTCT-G-A-TTTGATTTA-T
131 TTAATCTATTTAAAAACCATAAACCTTAATTTAATTTA-TCTAAACCCTAGAACCCTAATTTACT
* * *
82021795 CTAA-AATCTAAAACCCT-AA-TTTA-ATTAATTTTAACCAAAAACCCAAATTTAATTTATCTAA
195 -TAATAATCAAAAACCATAAACTCTAGATTAA-TTT-ACCAAAAACCCAAATTTAATTTATCTAA
* * *
82021856 AACTCTAAAACCCAAATTTACTTAATCTATTTAAAAATCATAAAC-CATAATTTATTTTATTTT
257 AACCCTAAAACCCAAATTTACTTAATCTATTTAAAAACCATAAACTC-TAATTTAATTTATTTT
* *
82021919 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATTTATTTAAAAACCATA
1 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAATCATA
* * *
82021984 AA-TCCTAATTTAATTTATTTTAAACTCTAATTTAATTTATTTAAAACTCTAGAACCCTAATTTA
66 AACT-CTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTA
82022048 CTTAATCTATTTAAAAACCATAAACCTTAATTTAA
130 CTTAATCTATTTAAAAACCATAAACCTTAATTTAA
82022083 ATAATTTTTA
Statistics
Matches: 433, Mismatches: 36, Indels: 26
0.87 0.07 0.05
Matches are distributed among these distances:
313 4 0.01
314 8 0.02
315 234 0.54
316 10 0.02
318 1 0.00
319 9 0.02
320 4 0.01
321 97 0.22
322 62 0.14
323 1 0.00
324 3 0.01
ACGTcount: A:0.41, C:0.18, G:0.02, T:0.39
Consensus pattern (319 bp):
AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAATCATA
AACTCTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTAC
TTAATCTATTTAAAAACCATAAACCTTAATTTAATTTATCTAAACCCTAGAACCCTAATTTACTT
AATAATCAAAAACCATAAACTCTAGATTAATTTACCAAAAACCCAAATTTAATTTATCTAAAACC
CTAAAACCCAAATTTACTTAATCTATTTAAAAACCATAAACTCTAATTTAATTTATTTT
Found at i:82021956 original size:30 final size:29
Alignment explanation
Indices: 82021918--82022001 Score: 87
Period size: 30 Copynumber: 2.7 Consensus size: 29
82021908 TATTTTATTT
82021918 TAAACCCTAATTTAATTTATCTAAAACCC
1 TAAACCCTAATTTAATTTATCTAAAACCC
* *
82021947 TAGAACCCTAATTTACTTAATTTATTTAAAAACCA
1 TA-AACCCTAA--T--TTAATTTATCT-AAAACCC
*
82021982 TAAATCCTAATTTAATTTAT
1 TAAACCCTAATTTAATTTAT
82022002 TTTAAACTCT
Statistics
Matches: 46, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
29 2 0.04
30 17 0.37
32 2 0.04
34 17 0.37
35 8 0.17
ACGTcount: A:0.42, C:0.18, G:0.01, T:0.39
Consensus pattern (29 bp):
TAAACCCTAATTTAATTTATCTAAAACCC
Found at i:82021978 original size:143 final size:142
Alignment explanation
Indices: 82021678--82021980 Score: 412
Period size: 143 Copynumber: 2.1 Consensus size: 142
82021668 AAACTCTAAT
* ** * *
82021678 TTAATTTATTT-TAAACCCTGATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTA
1 TTAATTTATTTAAAAACCCAAATTTAATTTATCTAAAACCCTAAAACCCAAATTTACTTAATCTA
* * * * *
82021742 TTTAAAAACCATAAACCCTAATTTGATTTATTTTAAACTCTGATTTGATTTATCTAAAATCTAAA
66 TTTAAAAACCATAAACCATAATTTGATTTATTTTAAACCCTAATTTAATTTATCTAAAACCTAAA
82021807 ACCCTAATTTAA
131 ACCCTAATTTAA
*** *
82021819 TTAATTTTAACCAAAAACCCAAATTTAATTTATCTAAAACTCTAAAACCCAAATTTACTTAATCT
1 TTAA-TTTATTTAAAAACCCAAATTTAATTTATCTAAAACCCTAAAACCCAAATTTACTTAATCT
*
82021884 ATTTAAAAATCATAAACCATAATTT-ATTTTATTTTAAACCCTAATTTAATTTATCTAAAACCCT
65 ATTTAAAAACCATAAACCATAATTTGA-TTTATTTTAAACCCTAATTTAATTTATCTAAAA-CCT
* *
82021948 AGAACCCTAATTTAC
128 AAAACCCTAATTTAA
82021963 TTAATTTATTTAAAAACC
1 TTAATTTATTTAAAAACC
82021981 ATAAATCCTA
Statistics
Matches: 138, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
141 4 0.03
142 5 0.04
143 110 0.80
144 19 0.14
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.40
Consensus pattern (142 bp):
TTAATTTATTTAAAAACCCAAATTTAATTTATCTAAAACCCTAAAACCCAAATTTACTTAATCTA
TTTAAAAACCATAAACCATAATTTGATTTATTTTAAACCCTAATTTAATTTATCTAAAACCTAAA
ACCCTAATTTAA
Found at i:82022002 original size:30 final size:29
Alignment explanation
Indices: 82021918--82022082 Score: 103
Period size: 34 Copynumber: 5.5 Consensus size: 29
82021908 TATTTTATTT
* *
82021918 TAAACCCTAATTTAATTTATCTAAAACCC
1 TAAACCCTAATTTAATTTATTTAAAACCA
82021947 TAGAACCCTAATTTACTTAATTTATTTAAAAACCA
1 TA-AACCCTAA--T--TTAATTTATTT-AAAACCA
*
82021982 TAAATCCTAATTTAATTTATTT-------
1 TAAACCCTAATTTAATTTATTTAAAACCA
*
82022004 TAAACTCTAATTTAATTTATTTAAAACTC-
1 TAAACCCTAATTTAATTTATTTAAAAC-CA
*
82022033 TAGAACCCTAATTTACTTAATCTATTTAAAAACCA
1 TA-AACCCTAA--T--TTAATTTATTT-AAAACCA
*
82022068 TAAACCTTAATTTAA
1 TAAACCCTAATTTAA
82022083 ATAATTTTTA
Statistics
Matches: 108, Mismatches: 8, Indels: 39
0.70 0.05 0.25
Matches are distributed among these distances:
22 20 0.19
29 4 0.04
30 30 0.28
32 4 0.04
34 35 0.32
35 15 0.14
ACGTcount: A:0.42, C:0.17, G:0.01, T:0.40
Consensus pattern (29 bp):
TAAACCCTAATTTAATTTATTTAAAACCA
Found at i:82022013 original size:22 final size:22
Alignment explanation
Indices: 82021988--82022034 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
82021978 ACCATAAATC
*
82021988 CTAATTTAATTTATTTTAAACT
1 CTAATTTAATTTATTTAAAACT
82022010 CTAATTTAATTTATTTAAAACT
1 CTAATTTAATTTATTTAAAACT
82022032 CTA
1 CTA
82022035 GAACCCTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (22 bp):
CTAATTTAATTTATTTAAAACT
Found at i:82022090 original size:86 final size:85
Alignment explanation
Indices: 82021833--82022082 Score: 392
Period size: 86 Copynumber: 2.9 Consensus size: 85
82021823 TTTTAACCAA
* * * *
82021833 AAACCCAAATTTAATTTATCTAAAACTCTAAAACCCAAATTTACTTAATCTATTTAAAAATCATA
1 AAACCCTAATTTAATTTATCTAAAACTCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
*
82021898 AACCATAATTTATTTTATTTT
66 AACC-TAATTTAATTTATTTT
* *
82021919 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATTTATTTAAAAACCATA
1 AAACCCTAATTTAATTTATCTAAAACTCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
82021984 AATCCTAATTTAATTTATTTT
66 AA-CCTAATTTAATTTATTTT
* *
82022005 AAACTCTAATTTAATTTATTTAAAACTCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
1 AAACCCTAATTTAATTTATCTAAAACTCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
82022070 AACCTTAATTTAA
66 AACC-TAATTTAA
82022083 ATAATTTTTA
Statistics
Matches: 151, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
85 2 0.01
86 147 0.97
87 2 0.01
ACGTcount: A:0.43, C:0.17, G:0.01, T:0.40
Consensus pattern (85 bp):
AAACCCTAATTTAATTTATCTAAAACTCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
AACCTAATTTAATTTATTTT
Found at i:82022618 original size:20 final size:20
Alignment explanation
Indices: 82022590--82022627 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
82022580 TTCATGTCTC
82022590 ATTTC-TTTTATCTATATTTA
1 ATTTCTTTTTA-CTATATTTA
*
82022610 ATTTTTTTTTACTATATT
1 ATTTCTTTTTACTATATT
82022628 GAATATACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (20 bp):
ATTTCTTTTTACTATATTTA
Found at i:82023031 original size:29 final size:30
Alignment explanation
Indices: 82022998--82023060 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
82022988 TATTGATTTA
82022998 TAAAATAT-AAAAGACAAAAACAACCAAAT
1 TAAAATATGAAAAGACAAAAACAACCAAAT
** *
82023027 TAAAATATGAAAAGATGAAAACATCCAAAT
1 TAAAATATGAAAAGACAAAAACAACCAAAT
82023057 TAAA
1 TAAA
82023061 CCAAAGAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 8 0.27
30 22 0.73
ACGTcount: A:0.65, C:0.11, G:0.06, T:0.17
Consensus pattern (30 bp):
TAAAATATGAAAAGACAAAAACAACCAAAT
Found at i:82023361 original size:24 final size:24
Alignment explanation
Indices: 82023315--82023359 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
82023305 TTTTTAATTT
82023315 TTTAAAATTAAAAAATATAAAATC
1 TTTAAAATTAAAAAATATAAAATC
82023339 TTTAAAATTAAAAAA-ATAAAA
1 TTTAAAATTAAAAAATATAAAA
82023360 ATATATATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 6 0.29
24 15 0.71
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (24 bp):
TTTAAAATTAAAAAATATAAAATC
Found at i:82024826 original size:22 final size:22
Alignment explanation
Indices: 82024796--82024875 Score: 108
Period size: 22 Copynumber: 3.6 Consensus size: 22
82024786 TGACGTTTTA
*
82024796 TTCAAGCTTAGTGCTGGTGTTG
1 TTCAGGCTTAGTGCTGGTGTTG
*
82024818 TTCAGGCTTAGTGCCGGTGTTG
1 TTCAGGCTTAGTGCTGGTGTTG
* *
82024840 TTTAGGCTTAGTG-TCGGTGTTA
1 TTCAGGCTTAGTGCT-GGTGTTG
82024862 TTCAGGCTTAGTGC
1 TTCAGGCTTAGTGC
82024876 CGAGCAAACT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.12, C:0.15, G:0.33, T:0.40
Consensus pattern (22 bp):
TTCAGGCTTAGTGCTGGTGTTG
Found at i:82027849 original size:2 final size:2
Alignment explanation
Indices: 82027842--82027880 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
82027832 TAAGTGCTTT
82027842 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
82027881 TCGAATAGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:82027910 original size:24 final size:26
Alignment explanation
Indices: 82027878--82027926 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
82027868 TATATATATA
* *
82027878 TATTCGAATA-GATGTAT-TAAATTG
1 TATTAGAATATGAGGTATATAAATTG
82027902 TATTAGAATATGAGGTATATAAATT
1 TATTAGAATATGAGGTATATAAATT
82027927 TATATTGACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 9 0.43
25 6 0.29
26 6 0.29
ACGTcount: A:0.41, C:0.02, G:0.16, T:0.41
Consensus pattern (26 bp):
TATTAGAATATGAGGTATATAAATTG
Found at i:82030524 original size:49 final size:49
Alignment explanation
Indices: 82030464--82030645 Score: 220
Period size: 49 Copynumber: 3.7 Consensus size: 49
82030454 CTGGTATGCA
* * * *
82030464 TAGTAGCCTGCACTTAGTACTACACATATGACCAATAATCTGGAACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCAGGTACACG
* * * * *
82030513 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-C-CAATTATCAGGTACACG
* * *
82030564 TAGTAGCATGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCAGGTACACG
* *
82030613 TAGTAGCCTGCACTTAATACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
82030646 TCACAATAGT
Statistics
Matches: 110, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 70 0.64
50 2 0.02
51 38 0.35
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCAGGTACACG
Found at i:82030576 original size:100 final size:100
Alignment explanation
Indices: 82030456--82030643 Score: 304
Period size: 100 Copynumber: 1.9 Consensus size: 100
82030446 GAAGTTATCT
* * * *
82030456 GGTATGCATAGTAGCCTGCACTTAGTACTACACATATGACCAATAATCTGGAACACGTAGTAGCC
1 GGTACGCATAGTAGCATGCACTTAGTACTACACATACGACCAATAATCCGGAACACGTAGTAGCC
*
82030521 TGCACTTAGTACTACACACGTGATCACAGTTTTCA
66 TGCACTTAATACTACACACGTGATCACAGTTTTCA
* * *
82030556 GGTACGCATAGTAGCATGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCATGCACTTAGTACTACACATACGACCAATAATCCGGAACACGTAGTAGCC
82030621 TGCACTTAATACTACACACGTGA
66 TGCACTTAATACTACACACGTGA
82030644 CCTCACAATA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 80 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCATGCACTTAGTACTACACATACGACCAATAATCCGGAACACGTAGTAGCC
TGCACTTAATACTACACACGTGATCACAGTTTTCA
Found at i:82035596 original size:20 final size:19
Alignment explanation
Indices: 82035552--82035598 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
82035542 TTGGATAACA
*
82035552 TTGAATTTTAAAATTTTTT
1 TTGATTTTTAAAATTTTTT
*
82035571 AT-ATTTTTAAAATATTTTT
1 TTGATTTTTAAAAT-TTTTT
82035590 TTGATTTTT
1 TTGATTTTT
82035599 TATTTTAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 10 0.43
19 7 0.30
20 6 0.26
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (19 bp):
TTGATTTTTAAAATTTTTT
Found at i:82035957 original size:60 final size:58
Alignment explanation
Indices: 82035870--82035983 Score: 133
Period size: 58 Copynumber: 1.9 Consensus size: 58
82035860 GAAAACAGTG
* * *
82035870 TCAAATTCAAGTACCAAATTGGACAAAAAAATACTTA-GTTATCAATTTAAGAAAAAAAAA
1 TCAAATTCAAGTACCAAATT-GA-ACAAAAATACTTAGGTAAT-AAGTTAAGAAAAAAAAA
* *
82035930 TCAAGTTCATGTACCAAATT-AATCAAAAATACTTAGGTAATAAGTTAAGAAAAA
1 TCAAATTCAAGTACCAAATTGAA-CAAAAATACTTAGGTAATAAGTTAAGAAAAA
82035984 GTGTAAATTT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
57 1 0.02
58 24 0.51
59 4 0.09
60 18 0.38
ACGTcount: A:0.53, C:0.11, G:0.10, T:0.26
Consensus pattern (58 bp):
TCAAATTCAAGTACCAAATTGAACAAAAATACTTAGGTAATAAGTTAAGAAAAAAAAA
Done.