Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 266 of 410
Found at i:82036540 original size:18 final size:19
Alignment explanation
Indices: 82036517--82036553 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
82036507 TACAAAATTC
82036517 AAATTTTT-AAAAAATTTT
1 AAATTTTTCAAAAAATTTT
*
82036535 AAATTTTTCACAAAATTTT
1 AAATTTTTCAAAAAATTTT
82036554 TAATAGAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (19 bp):
AAATTTTTCAAAAAATTTT
Found at i:82036549 original size:19 final size:18
Alignment explanation
Indices: 82036505--82036553 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
82036495 ATGTTCTCCA
*
82036505 TTTACAAAA-TTCAAATT
1 TTTACAAAATTTTAAATT
*
82036522 TTTAAAAAATTTTAAATT
1 TTTACAAAATTTTAAATT
82036540 TTTCACAAAATTTT
1 TTT-ACAAAATTTT
82036554 TAATAGAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 8 0.30
18 10 0.37
19 9 0.33
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (18 bp):
TTTACAAAATTTTAAATT
Found at i:82037070 original size:13 final size:13
Alignment explanation
Indices: 82037049--82037143 Score: 109
Period size: 13 Copynumber: 7.3 Consensus size: 13
82037039 AAATTTTTCC
*
82037049 AAAGCACTTCTTA
1 AAAGCACTTCTCA
*
82037062 AAAGTACTTCTCA
1 AAAGCACTTCTCA
82037075 AAAGCACTTCTCA
1 AAAGCACTTCTCA
*
82037088 AAAGTACTTCTCA
1 AAAGCACTTCTCA
* * *
82037101 AAAACACTTTTCC
1 AAAGCACTTCTCA
* *
82037114 ACAGCACTTTTCA
1 AAAGCACTTCTCA
*
82037127 AAAGCACTTTTCA
1 AAAGCACTTCTCA
82037140 AAAG
1 AAAG
82037144 TAATGAAGAA
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 70 1.00
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.28
Consensus pattern (13 bp):
AAAGCACTTCTCA
Found at i:82037078 original size:26 final size:26
Alignment explanation
Indices: 82037049--82037145 Score: 124
Period size: 26 Copynumber: 3.7 Consensus size: 26
82037039 AAATTTTTCC
82037049 AAAGCACTTCTT-AAAAGTACTTCTCA
1 AAAGCACTT-TTCAAAAGTACTTCTCA
*
82037075 AAAGCACTTCTCAAAAGTACTTCTCA
1 AAAGCACTTTTCAAAAGTACTTCTCA
* * * * *
82037101 AAAACACTTTTCCACAGCACTTTTCA
1 AAAGCACTTTTCAAAAGTACTTCTCA
82037127 AAAGCACTTTTCAAAAGTA
1 AAAGCACTTTTCAAAAGTA
82037146 ATGAAGAACT
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
25 1 0.02
26 58 0.98
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.29
Consensus pattern (26 bp):
AAAGCACTTTTCAAAAGTACTTCTCA
Found at i:82037483 original size:19 final size:19
Alignment explanation
Indices: 82037461--82037524 Score: 85
Period size: 20 Copynumber: 3.4 Consensus size: 19
82037451 AAATTACAAA
*
82037461 AAAAATCAAAATAATTTTT
1 AAAAATTAAAATAATTTTT
82037480 AAAAATTTAAAATAATTTTT
1 AAAAA-TTAAAATAATTTTT
* *
82037500 AAAATTTAAAAT-ATTTAT
1 AAAAATTAAAATAATTTTT
82037518 AAAAATT
1 AAAAATT
82037525 TCAAATTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
18 11 0.28
19 12 0.30
20 17 0.43
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAAATTAAAATAATTTTT
Found at i:82037491 original size:20 final size:20
Alignment explanation
Indices: 82037468--82037530 Score: 94
Period size: 19 Copynumber: 3.2 Consensus size: 20
82037458 AAAAAAAATC
82037468 AAAATAATTTTTAAAAATTT
1 AAAATAATTTTTAAAAATTT
82037488 AAAATAATTTTT-AAAATTT
1 AAAATAATTTTTAAAAATTT
*
82037507 AAAAT-ATTTATAAAAATTT
1 AAAATAATTTTTAAAAATTT
*
82037526 CAAAT
1 AAAAT
82037531 TTTAAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
18 5 0.12
19 23 0.57
20 12 0.30
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
AAAATAATTTTTAAAAATTT
Found at i:82037515 original size:9 final size:9
Alignment explanation
Indices: 82037477--82037564 Score: 60
Period size: 8 Copynumber: 9.8 Consensus size: 9
82037467 CAAAATAATT
82037477 TTTAAAA-A
1 TTTAAAATA
82037485 TTTAAAATAA
1 TTTAAAAT-A
*
82037495 TTTTTAAA-A
1 -TTTAAAATA
82037504 TTTAAAATA
1 TTTAAAATA
*
82037513 TTTATAAAAA
1 TTTA-AAATA
*
82037523 TTTCAAAT-
1 TTTAAAATA
82037531 TTTAAAAT-
1 TTTAAAATA
*
82037539 TTTAAAAAA
1 TTTAAAATA
82037548 TTCTAAAA-A
1 TT-TAAAATA
82037557 TTCTAAAA
1 TT-TAAAA
82037565 AATATATAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
8 27 0.41
9 20 0.30
10 13 0.20
11 6 0.09
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (9 bp):
TTTAAAATA
Found at i:82037525 original size:19 final size:19
Alignment explanation
Indices: 82037468--82037589 Score: 85
Period size: 19 Copynumber: 6.5 Consensus size: 19
82037458 AAAAAAAATC
*
82037468 AAAATAATTTTTAAAAATTT
1 AAAAT-ATTTATAAAAATTT
*
82037488 AAAATAATTT-TTAAAATTT
1 AAAAT-ATTTATAAAAATTT
82037507 AAAATATTTATAAAAATTT
1 AAAATATTTATAAAAATTT
* *
82037526 -CAA-ATTT-TAAAATTTT
1 AAAATATTTATAAAAATTT
* *
82037542 AAAA-AATTCTAAAAATTCT
1 AAAATATTTATAAAAATT-T
* * *
82037561 AAAAAATATATAAAAAGGTT
1 AAAATATTTATAAAAA-TTT
82037581 AAAAT-TTTA
1 AAAATATTTA
82037590 AAATTTTTCT
Statistics
Matches: 83, Mismatches: 13, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
16 8 0.10
17 9 0.11
18 13 0.16
19 29 0.35
20 23 0.28
21 1 0.01
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
AAAATATTTATAAAAATTT
Found at i:82044866 original size:18 final size:20
Alignment explanation
Indices: 82044829--82044868 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
82044819 ATATAAATTT
*
82044829 TAAAAATTCATAATAATATA
1 TAAAAATTCATAAAAATATA
82044849 TAAAAATT-A-AAAAATATA
1 TAAAAATTCATAAAAATATA
82044867 TA
1 TA
82044869 CATTTTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.53
19 1 0.05
20 8 0.42
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAAAATTCATAAAAATATA
Found at i:82046512 original size:47 final size:47
Alignment explanation
Indices: 82046403--82046513 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
82046393 CCGGGATAAG
* *
82046403 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
82046450 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
82046497 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
82046514 ACTCAATGTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.02
47 52 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:82053763 original size:47 final size:47
Alignment explanation
Indices: 82053654--82053764 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
82053644 CCGGGATAAG
*
82053654 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
82053701 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
82053748 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
82053765 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:82056615 original size:20 final size:20
Alignment explanation
Indices: 82056587--82056642 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
82056577 ATATATTCAT
*
82056587 AACCCCAAATATTGAACATG
1 AACCCCAAATATTAAACATG
* * *
82056607 AACCTCAAATTTTAAACTTG
1 AACCCCAAATATTAAACATG
* *
82056627 AACCCTAAATTTTAAA
1 AACCCCAAATATTAAA
82056643 TCTCAAGTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (20 bp):
AACCCCAAATATTAAACATG
Found at i:82056881 original size:15 final size:17
Alignment explanation
Indices: 82056840--82056894 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 17
82056830 TTAATTATTT
*
82056840 TAAATAGTTTAATA-AAA
1 TAAATA-TTAAATATAAA
*
82056857 TCAA-ATTAAAT-TAAA
1 TAAATATTAAATATAAA
82056872 -AAATATTAAATATAAA
1 TAAATATTAAATATAAA
82056888 TAAATAT
1 TAAATAT
82056895 ATAACAATAC
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
14 2 0.06
15 15 0.48
16 5 0.16
17 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (17 bp):
TAAATATTAAATATAAA
Found at i:82060354 original size:26 final size:26
Alignment explanation
Indices: 82060325--82060414 Score: 72
Period size: 27 Copynumber: 3.2 Consensus size: 26
82060315 TCTATGTTGA
82060325 AACTTGATATTTAATTTATATACTTT
1 AACTTGATATTTAATTTATATACTTT
** * * *
82060351 AACTTTTTTATATAATTAAGTATTCTATGTT
1 AAC-TTGATATTTAATTTA-TATAC--T-TT
82060382 GAAACTTGATATTTAATTTATATACTTT
1 --AACTTGATATTTAATTTATATACTTT
82060410 AACTT
1 AACTT
82060415 TTTTATATAA
Statistics
Matches: 47, Mismatches: 10, Indels: 14
0.66 0.14 0.20
Matches are distributed among these distances:
26 8 0.17
27 11 0.23
28 6 0.13
29 1 0.02
30 1 0.02
31 6 0.13
32 11 0.23
33 3 0.06
ACGTcount: A:0.34, C:0.08, G:0.06, T:0.52
Consensus pattern (26 bp):
AACTTGATATTTAATTTATATACTTT
Found at i:82060379 original size:59 final size:59
Alignment explanation
Indices: 82060312--82060430 Score: 238
Period size: 59 Copynumber: 2.0 Consensus size: 59
82060302 ATATGGACTC
82060312 TATTCTATGTTGAAACTTGATATTTAATTTATATACTTTAACTTTTTTATATAATTAAG
1 TATTCTATGTTGAAACTTGATATTTAATTTATATACTTTAACTTTTTTATATAATTAAG
82060371 TATTCTATGTTGAAACTTGATATTTAATTTATATACTTTAACTTTTTTATATAATTAAG
1 TATTCTATGTTGAAACTTGATATTTAATTTATATACTTTAACTTTTTTATATAATTAAG
82060430 T
1 T
82060431 CTCTTTACTT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.53
Consensus pattern (59 bp):
TATTCTATGTTGAAACTTGATATTTAATTTATATACTTTAACTTTTTTATATAATTAAG
Found at i:82062649 original size:40 final size:38
Alignment explanation
Indices: 82062605--82062696 Score: 114
Period size: 39 Copynumber: 2.3 Consensus size: 38
82062595 AGCGGCATTT
*
82062605 TTAGCGGCGTTTGAATGAAAAAC-CCGCTAAAGATCGAGTA
1 TTAGCGGCGTTT---TGAAAAACGCCGCTAAAGATCAAGTA
* *
82062645 TTAGCGGCGCTTTTTAAAAACGCTGCTAAAGATCAAGTA
1 TTAGCGGCG-TTTTGAAAAACGCCGCTAAAGATCAAGTA
82062684 TTAGCGGCGTTTT
1 TTAGCGGCGTTTT
82062697 TTTAAAATCG
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
38 11 0.23
39 24 0.51
40 9 0.19
41 3 0.06
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28
Consensus pattern (38 bp):
TTAGCGGCGTTTTGAAAAACGCCGCTAAAGATCAAGTA
Found at i:82062697 original size:38 final size:38
Alignment explanation
Indices: 82062622--82062703 Score: 119
Period size: 39 Copynumber: 2.1 Consensus size: 38
82062612 CGTTTGAATG
*
82062622 AAAAACCCGCTAAAGATCGAGTATTAGCGGCGCTTTTT
1 AAAAACCCGCTAAAGATCAAGTATTAGCGGCGCTTTTT
* *
82062660 AAAAACGCTGCTAAAGATCAAGTATTAGCGGCGTTTTTT
1 AAAAAC-CCGCTAAAGATCAAGTATTAGCGGCGCTTTTT
*
82062699 TAAAA
1 AAAAA
82062704 TCGCCTCTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
38 6 0.15
39 33 0.85
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (38 bp):
AAAAACCCGCTAAAGATCAAGTATTAGCGGCGCTTTTT
Found at i:82062899 original size:76 final size:77
Alignment explanation
Indices: 82062790--82062931 Score: 205
Period size: 76 Copynumber: 1.9 Consensus size: 77
82062780 AAATTAACAC
* * * * *
82062790 AACGCCGTCATTTTGTGTTGAGCCTTTAGTGGCTTTAGCGGCACTTTTT-AGAAAACGCCGCAAA
1 AACGCCATCATTTTGTATTGAGCCTTTAGTGGCTTTAACGGCACTTTTTAAAAAAACGCCACAAA
82062854 AGAATTTTGCAA
66 AGAATTTTGCAA
* * *
82062866 AACGCCATCGTTTTGTATTGAGCTTTTAGTGGCTTTAACGGCGCTTTTTAAAAAAACGCCACAAA
1 AACGCCATCATTTTGTATTGAGCCTTTAGTGGCTTTAACGGCACTTTTTAAAAAAACGCCACAAA
82062931 A
66 A
82062932 AATGAAAAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
76 43 0.75
77 14 0.25
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (77 bp):
AACGCCATCATTTTGTATTGAGCCTTTAGTGGCTTTAACGGCACTTTTTAAAAAAACGCCACAAA
AGAATTTTGCAA
Found at i:82063160 original size:15 final size:14
Alignment explanation
Indices: 82063140--82063174 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
82063130 ACTATTTTAA
*
82063140 GGTTTATGGATTAT
1 GGTTTAGGGATTAT
82063154 GGGTTTAGGGATTAT
1 -GGTTTAGGGATTAT
82063169 GGTTTA
1 GGTTTA
82063175 AGGGTGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:82063197 original size:25 final size:25
Alignment explanation
Indices: 82063155--82063202 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
82063145 ATGGATTATG
*
82063155 GGTTTAGGGATTATGGTTTAAGGGT
1 GGTTTAGGGATTACGGTTTAAGGGT
82063180 GGTTTAAGGG-TTACGGTTTAAGG
1 GGTTT-AGGGATTACGGTTTAAGG
82063203 TTTAGGTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.21, C:0.02, G:0.40, T:0.38
Consensus pattern (25 bp):
GGTTTAGGGATTACGGTTTAAGGGT
Found at i:82063204 original size:21 final size:21
Alignment explanation
Indices: 82063180--82063233 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
82063170 GTTTAAGGGT
*
82063180 GGTTTAAGGGTTACGGTTTAA
1 GGTTTAAGGGTTACGGGTTAA
*
82063201 GGTTT-AGGTGTTAGGGGTTAA
1 GGTTTAAGG-GTTACGGGTTAA
* *
82063222 GGGTAAAGGGTT
1 GGTTTAAGGGTT
82063234 CATATGGTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 3 0.11
21 21 0.78
22 3 0.11
ACGTcount: A:0.22, C:0.02, G:0.41, T:0.35
Consensus pattern (21 bp):
GGTTTAAGGGTTACGGGTTAA
Found at i:82063206 original size:7 final size:7
Alignment explanation
Indices: 82063180--82063301 Score: 50
Period size: 7 Copynumber: 16.9 Consensus size: 7
82063170 GTTTAAGGGT
82063180 GGTTTAA
1 GGTTTAA
* *
82063187 GGGTTAC
1 GGTTTAA
82063194 GGTTTAA
1 GGTTTAA
82063201 GGTTT-A
1 GGTTTAA
*
82063207 GGTGTTAG
1 GGT-TTAA
*
82063215 GGGTTAA
1 GGTTTAA
* *
82063222 GGGTAAA
1 GGTTTAA
*
82063229 GGGTTCATAT
1 -GGTT--TAA
*
82063239 GGTTTAG
1 GGTTTAA
82063246 GGTTT-A
1 GGTTTAA
* *
82063252 TGTTTTA
1 GGTTTAA
*
82063259 GGATTTAT
1 GG-TTTAA
82063267 GGTTTAA
1 GGTTTAA
*
82063274 GGTTTAG
1 GGTTTAA
* *
82063281 GGATTAG
1 GGTTTAA
82063288 GAGTTTAA
1 G-GTTTAA
82063296 GGTTTA
1 GGTTTA
82063302 GATTAATTAG
Statistics
Matches: 85, Mismatches: 22, Indels: 16
0.69 0.18 0.13
Matches are distributed among these distances:
6 8 0.09
7 57 0.67
8 15 0.18
9 4 0.05
10 1 0.01
ACGTcount: A:0.23, C:0.02, G:0.34, T:0.41
Consensus pattern (7 bp):
GGTTTAA
Found at i:82063258 original size:14 final size:14
Alignment explanation
Indices: 82063135--82063302 Score: 78
Period size: 14 Copynumber: 11.9 Consensus size: 14
82063125 GAGTTACTAT
* *
82063135 TTTAAGGTTTATGG
1 TTTATGGTTTAGGG
*
82063149 ATTATGGGTTTAGGG
1 TTTAT-GGTTTAGGG
*
82063164 ATTATGGTTTAAGGG
1 TTTATGGTTT-AGGG
82063179 ----TGGTTTAAGGG
1 TTTATGGTTT-AGGG
* *
82063190 -TTACGGTTTAAGG
1 TTTATGGTTTAGGG
82063203 TTTA-GGTGTTAGGGG
1 TTTATGGT-TTA-GGG
* * **
82063218 TTAAGGGTAAAGGG
1 TTTATGGTTTAGGG
82063232 TTCATATGGTTTAGGG
1 TT--TATGGTTTAGGG
* *
82063248 TTTATGTTTTAGGA
1 TTTATGGTTTAGGG
*
82063262 TTTATGGTTTAAGG
1 TTTATGGTTTAGGG
* *
82063276 TTTAGGGATTAGGAG
1 TTTATGGTTTAGG-G
*
82063291 TTTAAGGTTTAG
1 TTTATGGTTTAG
82063303 ATTAATTAGT
Statistics
Matches: 119, Mismatches: 23, Indels: 23
0.72 0.14 0.14
Matches are distributed among these distances:
11 11 0.09
13 6 0.05
14 55 0.46
15 34 0.29
16 13 0.11
ACGTcount: A:0.23, C:0.01, G:0.35, T:0.42
Consensus pattern (14 bp):
TTTATGGTTTAGGG
Found at i:82063284 original size:22 final size:22
Alignment explanation
Indices: 82063241--82063302 Score: 74
Period size: 21 Copynumber: 2.9 Consensus size: 22
82063231 GTTCATATGG
* *
82063241 TTTAGGGTTTATGTTTTA-GGA
1 TTTAGGGTTTAAGGTTTAGGGA
*
82063262 TTTATGGTTTAAGGTTTAGGGA
1 TTTAGGGTTTAAGGTTTAGGGA
82063284 -TTAGGAGTTTAAGGTTTAG
1 TTTAGG-GTTTAAGGTTTAG
82063303 ATTAATTAGT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 19 0.54
22 16 0.46
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.47
Consensus pattern (22 bp):
TTTAGGGTTTAAGGTTTAGGGA
Found at i:82063419 original size:14 final size:14
Alignment explanation
Indices: 82063396--82063440 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
82063386 TTAATTATCA
*
82063396 TTATGATTTAGGGT
1 TTATGGTTTAGGGT
82063410 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
* *
82063424 ATATAGTTTAGGGT
1 TTATGGTTTAGGGT
82063438 TTA
1 TTA
82063441 AAGTGTATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:82064024 original size:6 final size:7
Alignment explanation
Indices: 82064014--82064038 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
82064004 TTTAAAATTT
82064014 AAAAATA
1 AAAAATA
82064021 AAAAATA
1 AAAAATA
82064028 AAAAATA
1 AAAAATA
82064035 AAAA
1 AAAA
82064039 CTTAAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:82065295 original size:13 final size:13
Alignment explanation
Indices: 82065279--82065309 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
82065269 CATTGCTTTT
82065279 GAAAAGTGCTGTG
1 GAAAAGTGCTGTG
*
82065292 GAAAAGTGCTTTG
1 GAAAAGTGCTGTG
82065305 GAAAA
1 GAAAA
82065310 ATTTAAGTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (13 bp):
GAAAAGTGCTGTG
Found at i:82065656 original size:19 final size:20
Alignment explanation
Indices: 82065623--82065661 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
82065613 CACAATTGTA
82065623 TTATTTTAAAAAATA-TTTT
1 TTATTTTAAAAAATACTTTT
**
82065642 TTATTTTAATTAATACTTTT
1 TTATTTTAAAAAATACTTTT
82065662 AACACATTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (20 bp):
TTATTTTAAAAAATACTTTT
Found at i:82065993 original size:2 final size:2
Alignment explanation
Indices: 82065986--82066019 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
82065976 ATTTATATTG
82065986 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82066020 GCATCCTGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82068365 original size:23 final size:23
Alignment explanation
Indices: 82068335--82068950 Score: 443
Period size: 23 Copynumber: 26.9 Consensus size: 23
82068325 TAGTAAATGT
*
82068335 TGCAAATTGAAGTGTTTAAGTAC
1 TGCAAATTGAAGTGTTTAAGTGC
82068358 TGCAAATTGAAGTGTTT-AGTTGC
1 TGCAAATTGAAGTGTTTAAG-TGC
* * *
82068381 TGGAAATTG-AGATGTTTTA-TCGT
1 TGCAAATTGAAG-TGTTTAAGT-GC
* * * * * *
82068404 TG-TAATTGAGGAGTATAAATGT
1 TGCAAATTGAAGTGTTTAAGTGC
** * *
82068426 TGTTAATTGAAATGTTAAAGTGC
1 TGCAAATTGAAGTGTTTAAGTGC
* *
82068449 TACAAATTGAATTGTTTTAA-TGC
1 TGCAAATTGAAGTG-TTTAAGTGC
* *
82068472 TGTAAATTGAAGTGTTAAAGTGC
1 TGCAAATTGAAGTGTTTAAGTGC
82068495 TGCAAATTGAAGTGTTTGAA-TGC
1 TGCAAATTGAAGTGTTT-AAGTGC
* * *
82068518 TGTAAATTGAAGTGTTTAAATGT
1 TGCAAATTGAAGTGTTTAAGTGC
** * *
82068541 TGTTAATTGAAATGTTAAAGTGC
1 TGCAAATTGAAGTGTTTAAGTGC
82068564 TGCAAATTGAAGTGTTTTAA-TGC
1 TGCAAATTGAAGTG-TTTAAGTGC
* *
82068587 TGTAAATTGAAGTGTTAAAGTGC
1 TGCAAATTGAAGTGTTTAAGTGC
* *
82068610 TGCAATTTGAAGTGTTTGAA-TCC
1 TGCAAATTGAAGTGTTT-AAGTGC
** *
82068633 TATAAATTG-AGTGTTTAAATGC
1 TGCAAATTGAAGTGTTTAAGTGC
* *
82068655 TGTAAATTGAAGTGTTAAAGTGC
1 TGCAAATTGAAGTGTTTAAGTGC
*
82068678 TACAAATTGAAGTGTTTGAA-TGC
1 TGCAAATTGAAGTGTTT-AAGTGC
* *
82068701 TGTAAATTGAAGTGTTTAAATGC
1 TGCAAATTGAAGTGTTTAAGTGC
* * * *
82068724 TGTAAATTGAAGTGCTTAAATGT
1 TGCAAATTGAAGTGTTTAAGTGC
*
82068747 TGCAAATTGAAGTGTTTAAGTAC
1 TGCAAATTGAAGTGTTTAAGTGC
*
82068770 TGCAAATTGTAGTGTTT-AGTTGC
1 TGCAAATTGAAGTGTTTAAG-TGC
* * *
82068793 TGGACATTG-AGATGTTTTA-TCGC
1 TGCAAATTGAAG-TGTTTAAGT-GC
* * * * *
82068816 TG-TAATTGAGGTGTATAAATGT
1 TGCAAATTGAAGTGTTTAAGTGC
** * *
82068838 TGTTAATT-TAGATGTTAAAGTGC
1 TGCAAATTGAAG-TGTTTAAGTGC
* *
82068861 TACAAATTGAAGTGTTAAAGTGC
1 TGCAAATTGAAGTGTTTAAGTGC
* * *
82068884 TACAAATTGAAGTGTTTAAATGT
1 TGCAAATTGAAGTGTTTAAGTGC
* * * *
82068907 TGTAAATTGAAGTGCTTAAATGT
1 TGCAAATTGAAGTGTTTAAGTGC
82068930 TGCAAATTGAAGTGTTTAAGT
1 TGCAAATTGAAGTGTTTAAGT
82068951 ACTTATTTTG
Statistics
Matches: 475, Mismatches: 91, Indels: 54
0.77 0.15 0.09
Matches are distributed among these distances:
21 2 0.00
22 65 0.14
23 390 0.82
24 18 0.04
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.38
Consensus pattern (23 bp):
TGCAAATTGAAGTGTTTAAGTGC
Found at i:82068656 original size:183 final size:184
Alignment explanation
Indices: 82068447--82068953 Score: 658
Period size: 183 Copynumber: 2.8 Consensus size: 184
82068437 ATGTTAAAGT
* * * *
82068447 GCTACAAATTGAATTGTTTTAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTT
1 GCTATAAATTG-AGTGTTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTACAAATTGAAGTGTTT
* * *
82068512 GAATGCTGTAAATTGAAGTGTTTAAATGTTGTTAATTGAAATG-TTAAAGTGCTGCAAATTGAAG
65 GAATGCTGTAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGCTTAAA-TGTTGCAAATTGAAG
* *
82068576 TGTTTTAA-TGCTGTAAATTGAAGTGTTAAAG-TGCTGCA-ATTTGA-AGTGTTTGAATC
129 TGTTTTAAGTACTGCAAATTGAAGTGTT-AAGTTGCTGCACA-TTGAGA-TGTTT-AATC
82068632 -CTATAAATTGAGTGTTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTACAAATTGAAGTGTTTG
1 GCTATAAATTGAGTGTTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTACAAATTGAAGTGTTTG
*
82068696 AATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTG
66 AATGCTGTAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTG
* * * *
82068761 -TTTAAGTACTGCAAATTGTAGTGTTTAGTTGCTGGACATTGAGATGTTTTATC
131 TTTTAAGTACTGCAAATTGAAGTGTTAAGTTGCTGCACATTGAGATGTTTAATC
* * * * *
82068814 GCTGT-AATTGAGGTGTATAAATGTTGTTAATT-TAGATGTTAAAGTGCTACAAATTGAAGTG-T
1 GCTATAAATTGA-GTGTTTAAATGCTGTAAATTGAAG-TGTTAAAGTGCTACAAATTGAAGTGTT
* **
82068876 TAAAGTGCTACAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAA
64 TGAA-TGCTGTAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAA
82068941 GTG-TTTAAGTACT
128 GTGTTTTAAGTACT
82068954 TATTTTGGGT
Statistics
Matches: 290, Mismatches: 23, Indels: 20
0.87 0.07 0.06
Matches are distributed among these distances:
182 22 0.08
183 252 0.87
184 16 0.06
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.38
Consensus pattern (184 bp):
GCTATAAATTGAGTGTTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTACAAATTGAAGTGTTTG
AATGCTGTAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTG
TTTTAAGTACTGCAAATTGAAGTGTTAAGTTGCTGCACATTGAGATGTTTAATC
Found at i:82070386 original size:20 final size:20
Alignment explanation
Indices: 82070361--82070399 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
82070351 TTTCGACTAG
82070361 GTTCAGCTTGAACCTAAGTA
1 GTTCAGCTTGAACCTAAGTA
82070381 GTTCAGCTTGAACCTAAGT
1 GTTCAGCTTGAACCTAAGT
82070400 CTTTTCTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (20 bp):
GTTCAGCTTGAACCTAAGTA
Found at i:82072977 original size:37 final size:36
Alignment explanation
Indices: 82072926--82073001 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
82072916 ATTTTAAAAA
*
82072926 TAATATTATTTTAATAGT-TTAATATTAAATTTAAT-T
1 TAATATTATCTTAATAGTATT-ATATT-AATTTAATAT
*
82072962 TAATACTTATCTTAATAGTATTTTATTAATTTAATAT
1 TAATA-TTATCTTAATAGTATTATATTAATTTAATAT
82072999 TAA
1 TAA
82073002 AGTGGTTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 13 0.37
37 20 0.57
38 2 0.06
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (36 bp):
TAATATTATCTTAATAGTATTATATTAATTTAATAT
Found at i:82083011 original size:40 final size:40
Alignment explanation
Indices: 82082956--82083097 Score: 198
Period size: 40 Copynumber: 3.6 Consensus size: 40
82082946 TATTCGAACG
**
82082956 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
82082996 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTACTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
82083036 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-TATTGACT
*
82083076 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
82083098 TACTTGGGTT
Statistics
Matches: 91, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
39 14 0.15
40 73 0.80
41 4 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:82086719 original size:46 final size:46
Alignment explanation
Indices: 82086669--82086844 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
82086659 TGGTTGAGCA
82086669 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82086715 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
82086760 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82086808 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82086845 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82086825 original size:93 final size:93
Alignment explanation
Indices: 82086666--82086837 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
82086656 GGATGGTTGA
* *
82086666 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82086731 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
82086759 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82086824 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
82086838 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:82100840 original size:40 final size:40
Alignment explanation
Indices: 82100792--82100926 Score: 202
Period size: 40 Copynumber: 3.4 Consensus size: 40
82100782 AACGATATCT
82100792 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCG
* *
82100832 GGCTAAGTCCCGAAGGCTTTTGTGCTATTGACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCG
* *
82100872 GGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATCCG
*
82100911 GGCTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
82100927 TACTTGGGTT
Statistics
Matches: 86, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 14 0.16
40 70 0.81
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCG
Found at i:82109388 original size:40 final size:40
Alignment explanation
Indices: 82109318--82109458 Score: 189
Period size: 40 Copynumber: 3.6 Consensus size: 40
82109308 TATTCGAATG
82109318 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
82109357 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
82109397 ATATCCGGGCTAAGACCCAAAGACATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
82109437 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
82109459 TACTTGGGTT
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
39 27 0.31
40 59 0.67
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:82113081 original size:20 final size:20
Alignment explanation
Indices: 82113058--82113102 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
82113048 TGCAAACAGG
82113058 GGCACTGTA-GTCAAAATAGA
1 GGCACTG-AGGTCAAAATAGA
* *
82113078 GGCACTGAGGTGAAATTAGA
1 GGCACTGAGGTCAAAATAGA
82113098 GGCAC
1 GGCAC
82113103 CAAAGTGCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.36, C:0.16, G:0.31, T:0.18
Consensus pattern (20 bp):
GGCACTGAGGTCAAAATAGA
Found at i:82115792 original size:28 final size:27
Alignment explanation
Indices: 82115749--82115855 Score: 74
Period size: 28 Copynumber: 3.7 Consensus size: 27
82115739 GAAATCAGTG
82115749 TTAA-CTGGGCCTTAGCCCATATCAATA
1 TTAATCTGGGCC-TAGCCCATATCAATA
82115776 TTAATCTGGGCCATAGCCC-TATTACAATA
1 TTAATCTGGGCC-TAGCCCATA-T-CAATA
* *
82115805 TCAGAGCATACTGGGCCTAGCCCATATCAGTA
1 T--TA--AT-CTGGGCCTAGCCCATATCAATA
* *
82115837 TCAGTCTGGGCCGTAGCCC
1 TTAATCTGGGCC-TAGCCC
82115856 TATTACAAGT
Statistics
Matches: 65, Mismatches: 5, Indels: 19
0.73 0.06 0.21
Matches are distributed among these distances:
27 13 0.20
28 21 0.32
29 6 0.09
30 1 0.02
31 1 0.02
32 5 0.08
33 9 0.14
34 9 0.14
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (27 bp):
TTAATCTGGGCCTAGCCCATATCAATA
Found at i:82115797 original size:62 final size:60
Alignment explanation
Indices: 82115719--82115863 Score: 168
Period size: 61 Copynumber: 2.4 Consensus size: 60
82115709 TCAAGCCTTA
* * *
82115719 CTGGGCCTAAGCCCTATT-CAGAAATCAGTG-TTAACTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCCT-AGCCCTATTACA-AAATCAGAGCAT-ACTGGGCC-TAGCCCATATCAATATCAAT
* * *
82115781 CTGGGCCATAGCCCTATTACAATATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAGT
1 CTGGGCC-TAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAATATCAAT
82115842 CTGGGCCGTAGCCCTATTACAA
1 CTGGGCC-TAGCCCTATTACAA
82115864 GTCGAGATAT
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
61 38 0.52
62 31 0.42
63 4 0.05
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (60 bp):
CTGGGCCTAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAATATCAAT
Found at i:82115927 original size:19 final size:20
Alignment explanation
Indices: 82115884--82115939 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
82115874 ATTGGGTCTT
82115884 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
82115904 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
* *
82115923 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
82115940 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:82132712 original size:30 final size:29
Alignment explanation
Indices: 82132667--82132735 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 29
82132657 ATCACCACTA
*
82132667 ACCATTTTTCATTATAGACGTAACGGAGCT
1 ACCA-TTTTCATTATAGACGTAACAGAGCT
* *
82132697 ACCAGTTTTCGTTATAGACTTAACAGAGCT
1 ACCA-TTTTCATTATAGACGTAACAGAGCT
*
82132727 TCCATTTTC
1 ACCATTTTC
82132736 TATCCCCCTA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 5 0.15
30 29 0.85
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (29 bp):
ACCATTTTCATTATAGACGTAACAGAGCT
Found at i:82138122 original size:41 final size:40
Alignment explanation
Indices: 82138065--82138146 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 40
82138055 GTTTAAACGT
*
82138065 TCACAAAAGATAAGTGTAGGTAAAATATCCAAAATATCGAG
1 TCACAAAAGATAAGTGTAGCTAAAATATCCAAAATAT-GAG
* * *
82138106 TCACAAAAGATGAGTGTAGCTAAAATATTCGAAATATGAG
1 TCACAAAAGATAAGTGTAGCTAAAATATCCAAAATATGAG
82138146 T
1 T
82138147 ATATGAGAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 4 0.11
41 33 0.89
ACGTcount: A:0.46, C:0.11, G:0.18, T:0.24
Consensus pattern (40 bp):
TCACAAAAGATAAGTGTAGCTAAAATATCCAAAATATGAG
Found at i:82140008 original size:16 final size:16
Alignment explanation
Indices: 82139986--82140040 Score: 92
Period size: 16 Copynumber: 3.4 Consensus size: 16
82139976 GTTTGGTTCA
82139986 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
* *
82140002 TTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
82140018 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
82140034 CTGTAAT
1 CTGTAAT
82140041 CAGTAATTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:82140297 original size:58 final size:58
Alignment explanation
Indices: 82140226--82140339 Score: 167
Period size: 58 Copynumber: 2.0 Consensus size: 58
82140216 AGATTATTAT
* *
82140226 TAAAAATAATTTAATAAAAATAATAAATAATTTAATCATATT-TTAACATAATTATTGC
1 TAAAAATAATTTAAT-AAAATAATAAATAATTTAATAAAATTCTTAACATAATTATTGC
* * *
82140284 TAAATATAATTTAATAAAATAATATATAATTTAATAAAATTCTTAATATAATTATT
1 TAAAAATAATTTAATAAAATAATAAATAATTTAATAAAATTCTTAACATAATTATT
82140340 ATTATATGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
57 23 0.46
58 27 0.54
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.42
Consensus pattern (58 bp):
TAAAAATAATTTAATAAAATAATAAATAATTTAATAAAATTCTTAACATAATTATTGC
Found at i:82145105 original size:29 final size:29
Alignment explanation
Indices: 82145071--82145202 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
82145061 TACTCGATTT
** * *
82145071 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
82145100 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
82145129 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
82145158 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
82145187 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
82145203 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:82153039 original size:29 final size:29
Alignment explanation
Indices: 82153005--82153136 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
82152995 TACTCGATTT
** * *
82153005 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
82153034 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
82153063 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
82153092 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
82153121 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
82153137 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:82155892 original size:44 final size:44
Alignment explanation
Indices: 82155830--82155929 Score: 164
Period size: 44 Copynumber: 2.2 Consensus size: 44
82155820 ATAGGAAGGG
*
82155830 TTCTTCATGTTGATATTCATTTTTCTATCATTCTTCTATTTTTTTC
1 TTCTTC-T-TTGATATTCATTTTTCTATCATTCTTCTATCTTTTTC
*
82155876 TTCTTCTTTGATATTCATTTTTCTATCATTTTTCTATCTTTTTC
1 TTCTTCTTTGATATTCATTTTTCTATCATTCTTCTATCTTTTTC
82155920 TTCTTCTTTG
1 TTCTTCTTTG
82155930 GTTCATTCTG
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
44 45 0.87
45 1 0.02
46 6 0.12
ACGTcount: A:0.13, C:0.18, G:0.04, T:0.65
Consensus pattern (44 bp):
TTCTTCTTTGATATTCATTTTTCTATCATTCTTCTATCTTTTTC
Found at i:82155906 original size:11 final size:11
Alignment explanation
Indices: 82155846--82155920 Score: 68
Period size: 11 Copynumber: 6.9 Consensus size: 11
82155836 ATGTTGATAT
82155846 TCATTTTTCTA
1 TCATTTTTCTA
*
82155857 TCATTCTTCTA
1 TCATTTTTCTA
*
82155868 T-TTTTTTCT-
1 TCATTTTTCTA
*
82155877 TC-TTCTTTGATA
1 TCATT-TTT-CTA
82155889 TTCATTTTTCTA
1 -TCATTTTTCTA
82155901 TCATTTTTCTA
1 TCATTTTTCTA
82155912 TC-TTTTTCT
1 TCATTTTTCT
82155921 TCTTCTTTGG
Statistics
Matches: 53, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
9 3 0.06
10 16 0.30
11 25 0.47
12 2 0.04
13 5 0.09
14 2 0.04
ACGTcount: A:0.13, C:0.19, G:0.01, T:0.67
Consensus pattern (11 bp):
TCATTTTTCTA
Found at i:82159405 original size:46 final size:45
Alignment explanation
Indices: 82159258--82159480 Score: 186
Period size: 46 Copynumber: 4.8 Consensus size: 45
82159248 ATGGGGTAGG
*
82159258 ATGCCGATGCCATGTCCC-GAACATGGTCTTACACTAGC-TCAACTC-
1 ATGCCGATG-CATGTCCCAG-ACAT-GTCTTACACTAGCTTCATCTCA
* * * * *
82159303 GTAGTCGATGCATGTCCCAGACATGTCTTACATTGGCTTACATCTCG
1 AT-GCCGATGCATGTCCCAGACATGTCTTACACTAGCTT-CATCTCA
* * * *
82159350 AGGCTGATGCATGTCCTAGACATGTCTTACACTAGCTCTCGTCTCA
1 ATGCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TCATCTCA
* * *
82159396 ATGCCGATGCCATGTCCTAGACATGGTCTTACACTAG-TTCTTGT-A
1 ATGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTCATCTCA
*
82159441 ATGTGGCCAATGCATGTCCCAGACATGTCTTACACTAGCT
1 A--T-GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
82159481 CACAATAACC
Statistics
Matches: 146, Mismatches: 20, Indels: 22
0.78 0.11 0.12
Matches are distributed among these distances:
44 11 0.08
45 16 0.11
46 70 0.48
47 31 0.21
48 18 0.12
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (45 bp):
ATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTCATCTCA
Found at i:82172638 original size:49 final size:49
Alignment explanation
Indices: 82172567--82172933 Score: 567
Period size: 47 Copynumber: 7.7 Consensus size: 49
82172557 AGATTTTAAC
82172567 GTGATGAATGT-AAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
82172615 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
*
82172662 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
82172711 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
82172760 GTGATGAATGTGAAAGTGTATATA-A-GTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
* * *
82172807 GTGATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
* * * * *
82172854 GTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCCAAC
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
*
82172901 GTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAG
82172934 TCTCGAAGGG
Statistics
Matches: 300, Mismatches: 10, Indels: 19
0.91 0.03 0.06
Matches are distributed among these distances:
45 6 0.02
46 4 0.01
47 165 0.55
48 16 0.05
49 109 0.36
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
Found at i:82175312 original size:39 final size:39
Alignment explanation
Indices: 82175269--82175657 Score: 643
Period size: 39 Copynumber: 10.0 Consensus size: 39
82175259 ATTATATTAT
* *
82175269 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
82175308 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
82175347 CAGCACGAAGCCTGTGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
82175386 CAGCACGAAGCTTGCGGGACTTTAGTCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
82175425 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
82175464 CAGCACGAAGCCTGTGGGACTTTAGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
82175503 CAGCACGAAGCCTGCGGGACTTTAGTCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
82175542 CAGCACGAAGCCTGTGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
82175581 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
82175620 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
82175658 TCAGTGTCTT
Statistics
Matches: 326, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 326 1.00
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:82183347 original size:2 final size:2
Alignment explanation
Indices: 82183340--82183364 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
82183330 ATAAGCTATG
82183340 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
82183365 GAATTCTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:82189541 original size:21 final size:21
Alignment explanation
Indices: 82189515--82189558 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
82189505 TTCATAAGTA
82189515 TGTACCCTCATATGATATCCT
1 TGTACCCTCATATGATATCCT
82189536 TGTACCCTCATATGATATCCT
1 TGTACCCTCATATGATATCCT
82189557 TG
1 TG
82189559 ATCTCTTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.27, G:0.11, T:0.39
Consensus pattern (21 bp):
TGTACCCTCATATGATATCCT
Found at i:82193127 original size:124 final size:124
Alignment explanation
Indices: 82192905--82193129 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
82192895 GAATTATGTG
* * * * * * *
82192905 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
82192970 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
82193029 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
82193094 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
82193130 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:82193251 original size:40 final size:40
Alignment explanation
Indices: 82193124--82193253 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
82193114 TTGCTGGAAA
* * *
82193124 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
82193164 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
82193204 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
82193244 TTATATCCGG
1 TTATATCCGG
82193254 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:82194823 original size:43 final size:43
Alignment explanation
Indices: 82194776--82194868 Score: 114
Period size: 43 Copynumber: 2.2 Consensus size: 43
82194766 TTGTTAGAAT
* * *
82194776 TATGTGGACAAGCCACTAGTATTTGCAATCAAGCTGCCAAAAA
1 TATGTGGACAAGCCACCAATAATTGCAATCAAGCTGCCAAAAA
* * * *
82194819 TATGTGGACAAGTCACCAATAATTGTAGTCAAGCTGCCAGAAA
1 TATGTGGACAAGCCACCAATAATTGCAATCAAGCTGCCAAAAA
*
82194862 CATGTGG
1 TATGTGG
82194869 TTAAACCCCC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (43 bp):
TATGTGGACAAGCCACCAATAATTGCAATCAAGCTGCCAAAAA
Found at i:82197184 original size:43 final size:42
Alignment explanation
Indices: 82197093--82197199 Score: 153
Period size: 43 Copynumber: 2.5 Consensus size: 42
82197083 GATTAACGAG
* *
82197093 ATGTGATTACATGTAAGACCATGTTTGGGACATTGGCATTGT
1 ATGTGATTACGTGTAAGACCATGTTTGGGACATTGGCATCGT
82197135 ATTGTGATTACGTGTAAGACCATGTTTGGGACATTGGCATCGTT
1 A-TGTGATTACGTGTAAGACCATGTTTGGGACATTGGCATCG-T
*
82197179 ATGTGAATT-TGTGTAAGACCA
1 ATGTG-ATTACGTGTAAGACCA
82197200 AAGCTAGGCT
Statistics
Matches: 59, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
42 1 0.02
43 53 0.90
44 5 0.08
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (42 bp):
ATGTGATTACGTGTAAGACCATGTTTGGGACATTGGCATCGT
Found at i:82203485 original size:30 final size:30
Alignment explanation
Indices: 82203451--82203544 Score: 86
Period size: 30 Copynumber: 3.2 Consensus size: 30
82203441 CCTTATGTTG
82203451 TGAATAGACCATGGATAGTGGATATTGACA
1 TGAATAGACCATGGATAGTGGATATTGACA
* ** *** ***
82203481 TGAATAG-CCGTCCA-AGTCCTTA-TGTTG
1 TGAATAGACCATGGATAGTGGATATTGACA
82203508 TGAATAGACCATGGATAGTGGATATTGACA
1 TGAATAGACCATGGATAGTGGATATTGACA
82203538 TGAATAG
1 TGAATAG
82203545 CCGTCCATTA
Statistics
Matches: 43, Mismatches: 18, Indels: 6
0.64 0.27 0.09
Matches are distributed among these distances:
27 9 0.21
28 9 0.21
29 9 0.21
30 16 0.37
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.29
Consensus pattern (30 bp):
TGAATAGACCATGGATAGTGGATATTGACA
Found at i:82203511 original size:57 final size:57
Alignment explanation
Indices: 82203437--82203551 Score: 230
Period size: 57 Copynumber: 2.0 Consensus size: 57
82203427 ATTAAATGTG
82203437 AAGTCCTTATGTTGTGAATAGACCATGGATAGTGGATATTGACATGAATAGCCGTCC
1 AAGTCCTTATGTTGTGAATAGACCATGGATAGTGGATATTGACATGAATAGCCGTCC
82203494 AAGTCCTTATGTTGTGAATAGACCATGGATAGTGGATATTGACATGAATAGCCGTCC
1 AAGTCCTTATGTTGTGAATAGACCATGGATAGTGGATATTGACATGAATAGCCGTCC
82203551 A
1 A
82203552 TTATGTGTTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (57 bp):
AAGTCCTTATGTTGTGAATAGACCATGGATAGTGGATATTGACATGAATAGCCGTCC
Found at i:82204501 original size:43 final size:43
Alignment explanation
Indices: 82204452--82204559 Score: 162
Period size: 43 Copynumber: 2.5 Consensus size: 43
82204442 GATTAACAAG
** *
82204452 ATGTGATTAAATGTAAGACCATGTATGGGACATTGGCATTGTT
1 ATGTGATTACGTGTAAGACCATGTATGGGACATTGGCATCGTT
* *
82204495 TTGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
1 ATGTGATTACGTGTAAGACCATGTATGGGACATTGGCATCGTT
*
82204538 ATGTGATTTCGTGTAAGACCAT
1 ATGTGATTACGTGTAAGACCAT
82204560 AGCTAGGCTA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTATGGGACATTGGCATCGTT
Found at i:82204573 original size:43 final size:43
Alignment explanation
Indices: 82204452--82204578 Score: 150
Period size: 43 Copynumber: 3.0 Consensus size: 43
82204442 GATTAACAAG
** * * *
82204452 ATGTGATTAAATGTAAGACCATGTATGGGACATTGGCATTGTT
1 ATGTGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTT
* *
82204495 TTGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
1 ATGTGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTT
*
82204538 ATGTGATTTCGTGTAAGACCATAG-CTAGG-CTATTGGCATCG
1 ATGTGATTACGTGTAAGACCAT-GTCTAGGAC-ATTGGCATCG
82204579 ATATAAGATA
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
42 1 0.01
43 72 0.97
44 1 0.01
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTT
Found at i:82208032 original size:46 final size:46
Alignment explanation
Indices: 82207980--82208299 Score: 444
Period size: 46 Copynumber: 7.0 Consensus size: 46
82207970 AGGGTACTCT
* **
82207980 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* **
82208026 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
*
82208072 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* ** *
82208118 ATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* *
82208164 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* *
82208210 GTGACACGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
82208256 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGACATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCA
82208300 TCATGTCAAA
Statistics
Matches: 256, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.00
46 255 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:82208606 original size:16 final size:17
Alignment explanation
Indices: 82208585--82208617 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
82208575 ATGATGGTGC
82208585 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
82208601 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
82208618 TACTAATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:82226723 original size:50 final size:49
Alignment explanation
Indices: 82226660--82226792 Score: 176
Period size: 49 Copynumber: 2.7 Consensus size: 49
82226650 GAGATGTGTC
* * * *
82226660 AGTGTAAGACCATGTCTGGGATATGGCATCGGCATGGTTATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCG-AATATGAGAGCT
* * * *
82226710 AGTGTAGGACCATGTCTGGGACATGGCATAGGCCTCGAATATGATAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAATATGAGAGCT
*
82226759 AGTGTAAGACCATGTCTAGGACATGGCATCGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
82226793 CTTTACCCAT
Statistics
Matches: 71, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
49 39 0.55
50 32 0.45
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAATATGAGAGCT
Found at i:82245185 original size:25 final size:24
Alignment explanation
Indices: 82245151--82245199 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
82245141 ATTTTTGTAA
*
82245151 TTATTTTGGGTTTATGTTAATATTT
1 TTATTTTGGGTTTATCTT-ATATTT
82245176 TTATTTTGGGTTTATCTTATATTT
1 TTATTTTGGGTTTATCTTATATTT
82245200 CTCGTTGGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.18, C:0.02, G:0.14, T:0.65
Consensus pattern (24 bp):
TTATTTTGGGTTTATCTTATATTT
Found at i:82248131 original size:40 final size:40
Alignment explanation
Indices: 82248076--82248160 Score: 154
Period size: 40 Copynumber: 2.1 Consensus size: 40
82248066 TTCATATGCC
82248076 ATAGACATGGACTTACTTACACATATATGGCTCAAAGCCT
1 ATAGACATGGACTTACTTACACATATATGGCTCAAAGCCT
*
82248116 ATAGACATGGGCTTACTTACACATATATGGCTCAAAGCCT
1 ATAGACATGGACTTACTTACACATATATGGCTCAAAGCCT
82248156 -TAGAC
1 ATAGAC
82248161 TCCGTAGAGT
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
39 5 0.11
40 39 0.89
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.27
Consensus pattern (40 bp):
ATAGACATGGACTTACTTACACATATATGGCTCAAAGCCT
Found at i:82258988 original size:69 final size:69
Alignment explanation
Indices: 82258877--82259015 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
82258867 CAAGACTCTA
*
82258877 TCAGCCCTACCACCACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
82258942 CCTG
66 CCTG
82258946 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
82259011 CCTG
66 CCTG
82259015 T
1 T
82259016 TTTTCCTATC
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.28, C:0.32, G:0.13, T:0.27
Consensus pattern (69 bp):
TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
CCTG
Found at i:82273796 original size:22 final size:22
Alignment explanation
Indices: 82273766--82273849 Score: 123
Period size: 22 Copynumber: 3.8 Consensus size: 22
82273756 AAGACAGCTT
*
82273766 AACGCCGTAGACAGGACGACTC
1 AACGTCGTAGACAGGACGACTC
*
82273788 AACGTCGTAGACAGGATGACTC
1 AACGTCGTAGACAGGACGACTC
* *
82273810 AACGTCGTAGATAGGACAACTC
1 AACGTCGTAGACAGGACGACTC
*
82273832 AACATCGTAGACAGGACG
1 AACGTCGTAGACAGGACG
82273850 GCTAAAGGCT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 54 1.00
ACGTcount: A:0.35, C:0.25, G:0.26, T:0.14
Consensus pattern (22 bp):
AACGTCGTAGACAGGACGACTC
Found at i:82277044 original size:25 final size:25
Alignment explanation
Indices: 82277008--82277097 Score: 73
Period size: 24 Copynumber: 3.8 Consensus size: 25
82276998 ATATAACTGG
*
82277008 AAGCTCA-TAAGAGCCATAATCAGA
1 AAGCTCACAAAGAGCCATAATCAGA
* * *
82277032 AAGTTCACAAAGAACCA-GATCGAGA
1 AAGCTCACAAAGAGCCATAATC-AGA
* * *
82277057 AA-CTCACGAAGAGCC-T-ATTAGG
1 AAGCTCACAAAGAGCCATAATCAGA
82277079 AAGCTCACAAAGAGCCATA
1 AAGCTCACAAAGAGCCATA
82277098 TATCGGGAAG
Statistics
Matches: 50, Mismatches: 10, Indels: 11
0.70 0.14 0.15
Matches are distributed among these distances:
22 4 0.08
23 14 0.28
24 20 0.40
25 12 0.24
ACGTcount: A:0.44, C:0.22, G:0.19, T:0.14
Consensus pattern (25 bp):
AAGCTCACAAAGAGCCATAATCAGA
Found at i:82282801 original size:109 final size:109
Alignment explanation
Indices: 82282608--82282838 Score: 345
Period size: 109 Copynumber: 2.1 Consensus size: 109
82282598 TTCGAAAGGT
* ** * *
82282608 ACACGGGTGTGTGGTTGGCCATGTGACCTAAGTCAGAGAGTTACACGGGGTAGGACACGGGCTGA
1 ACACGGGCGTGTGGTTGGCCATGTGACCTAAGTCAGAGAGTTACACAAGCTAGGACACGGGATGA
* * *
82282673 GACATGGCCATGTGGTTCCATTTCTAATGTCCACACGGCCTGTG
66 GACACGGCCATGTGATTCCATTTCGAATGTCCACACGGCCTGTG
* * * *
82282717 ACACGGGCGTGTGGTTGGCCATGTGACCTAAGTTAGAGAGTTACATAAGCTGGGACACGGGATGG
1 ACACGGGCGTGTGGTTGGCCATGTGACCTAAGTCAGAGAGTTACACAAGCTAGGACACGGGATGA
82282782 GACACGGCCATGTGATTCCATTTCGAATGTCCACACGGCCTGTG
66 GACACGGCCATGTGATTCCATTTCGAATGTCCACACGGCCTGTG
*
82282826 ACACTGGCGTGTG
1 ACACGGGCGTGTG
82282839 TCCCCTGTAC
Statistics
Matches: 109, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
109 109 1.00
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.23
Consensus pattern (109 bp):
ACACGGGCGTGTGGTTGGCCATGTGACCTAAGTCAGAGAGTTACACAAGCTAGGACACGGGATGA
GACACGGCCATGTGATTCCATTTCGAATGTCCACACGGCCTGTG
Found at i:82284366 original size:70 final size:70
Alignment explanation
Indices: 82284246--82284577 Score: 369
Period size: 70 Copynumber: 4.7 Consensus size: 70
82284236 TCTAAAGATT
* * * * * * * *
82284246 GTAGGTTTAATACCGCAACCTCCAAACAGCTAGCTAGTGATAAAAGCTCCCAATTGTCACTCTAA
1 GTAGGTTTAATACTGCAGCCTCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAATTATCACTCTAA
*
82284311 GGTTC
66 GGCTC
** * * *
82284316 GTAAATTTGATACTGCAGCCTCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAATTGTCAATCTAA
1 GTAGGTTTAATACTGCAGCCTCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAATTATCACTCTAA
82284381 GGCTC
66 GGCTC
** * * * *
82284386 GTAGGTTTAATACTGCCA-CCTTTAAATAATTAGCGAGAGTTAAAAGCTCCTAAGTATCACTCCA
1 GTAGGTTTAATACTG-CAGCCTCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAATTATCACTCTA
82284450 AGGCTC
65 AGGCTC
* * * * ** * * *
82284456 GCAGGTTTAGTACTTCAGCCTCTAAATAGTTAGCGAGAGTTAAAAGCTCCCAGCTATTATTTTAA
1 GTAGGTTTAATACTGCAGCCTCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAATTATCACTCTAA
82284521 GGCTC
66 GGCTC
* *
82284526 GTAGGTTTAATACTGCAGCTTTCAAATAGTTAGCGAGAGTTAAAAGCTCCCA
1 GTAGGTTTAATACTGCAGCCTCCAAATAGTTAGCGAGAGTTAAAAGCTCCCA
82284578 GCTGTTATTT
Statistics
Matches: 219, Mismatches: 41, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
69 2 0.01
70 215 0.98
71 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (70 bp):
GTAGGTTTAATACTGCAGCCTCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAATTATCACTCTAA
GGCTC
Found at i:82290823 original size:21 final size:20
Alignment explanation
Indices: 82290796--82290838 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
82290786 TCCTAGGAAT
* *
82290796 AGTGGGTTCAAGTCATGAAC
1 AGTGGGGTCAAATCATGAAC
82290816 AGTGGGGTCAAATCATGAAC
1 AGTGGGGTCAAATCATGAAC
82290836 AGT
1 AGT
82290839 AACAATAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23
Consensus pattern (20 bp):
AGTGGGGTCAAATCATGAAC
Found at i:82293462 original size:10 final size:10
Alignment explanation
Indices: 82293447--82293495 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
82293437 GAAGAGAATG
82293447 AAAAAAAAGA
1 AAAAAAAAGA
82293457 AAAAAAAAGA
1 AAAAAAAAGA
*
82293467 AAAGTTAAAAGA
1 AAA--AAAAAGA
* *
82293479 ACATAAAAGA
1 AAAAAAAAGA
82293489 AAAAAAA
1 AAAAAAA
82293496 TTAAATTGCT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 25 0.76
12 8 0.24
ACGTcount: A:0.82, C:0.02, G:0.10, T:0.06
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:82297309 original size:56 final size:56
Alignment explanation
Indices: 82297198--82297347 Score: 192
Period size: 57 Copynumber: 2.6 Consensus size: 56
82297188 AAGCAACTTT
* * * * * *
82297198 ATACTTGAGAAAATTTGAAAGATAACCAACTAGGGATGTGGATCCGCAAGTTGTTTC
1 ATACTTAAGAAAATTTGAAAGATAAAC-AGTTGGGATGTGAAACCGCAAGTTGTTTC
* * *
82297255 ATACTTAAGACAATTTGAAAGATAAACAGTTTGGATGTGAAACCGCAAGTTGTTTT
1 ATACTTAAGAAAATTTGAAAGATAAACAGTTGGGATGTGAAACCGCAAGTTGTTTC
82297311 ATACTTAAGAAAATTTTGAAAGATAACACAGTTGGGA
1 ATACTTAAGAAAA-TTTGAAAGATAA-ACAGTTGGGA
82297348 GTTTTCAACT
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
56 35 0.44
57 36 0.45
58 9 0.11
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.29
Consensus pattern (56 bp):
ATACTTAAGAAAATTTGAAAGATAAACAGTTGGGATGTGAAACCGCAAGTTGTTTC
Found at i:82297459 original size:69 final size:69
Alignment explanation
Indices: 82297338--82297686 Score: 346
Period size: 69 Copynumber: 5.0 Consensus size: 69
82297328 GAAAGATAAC
* * * * *
82297338 ACAGTTGGGAGTTTTCAACTCTCACTAACTATGTTGGAGGCTGTAGTCTTTATCCTGCGAGCCTT
1 ACAGTTGGGAGCTTT--GCTCTCACTAACTGTGTTGGAGGCTGCAGTTTTTATCCTGCGAGCCTT
*
82297403 AGTAGG
64 AGTATG
* * * *
82297409 ACAGTTGGGAGCTTTGCTCTCACTAACTATGTTGGAAGTTGCAGTTTTTATCCTGCGATCCTTAG
1 ACAGTTGGGAGCTTTGCTCTCACTAACTGTGTTGGAGGCTGCAGTTTTTATCCTGCGAGCCTTAG
82297474 TATG
66 TATG
* * * * * *
82297478 ATAGCTGGGAGCTTTGCTCTCACTAATTGTGTTGGAGACT--ATGATTTTAATCCTGTGAGCCTT
1 ACAGTTGGGAGCTTTGCTCTCACTAACTGTGTTGGAGGCTGCA-G-TTTTTATCCTGCGAGCCTT
*
82297541 AATATG
64 AGTATG
** * * * * * *
82297547 ACAGTTGGGAGCTTTGCTCTTGCTAATTGTGTTGGAGGCTACGACTTTTCA-CTTGCAAGCCTTA
1 ACAGTTGGGAGCTTTGCTCTCACTAACTGTGTTGGAGGCTGC-AGTTTTTATCCTGCGAGCCTTA
82297611 -TATG
65 GTATG
** * * * *
82297615 ACACCTGGGAGCTTTGCTCTCGCTAACTGTGTTAGAGGCTGCAGTTTTTATCTTGCGAGCCTTAA
1 ACAGTTGGGAGCTTTGCTCTCACTAACTGTGTTGGAGGCTGCAGTTTTTATCCTGCGAGCCTTAG
82297680 TATG
66 TATG
82297684 ACA
1 ACA
82297687 TAAATGTTGT
Statistics
Matches: 233, Mismatches: 38, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
67 7 0.03
68 53 0.23
69 153 0.66
70 5 0.02
71 14 0.06
72 1 0.00
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (69 bp):
ACAGTTGGGAGCTTTGCTCTCACTAACTGTGTTGGAGGCTGCAGTTTTTATCCTGCGAGCCTTAG
TATG
Found at i:82299406 original size:27 final size:28
Alignment explanation
Indices: 82299376--82299445 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
82299366 ATAATAAGTC
*
82299376 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
82299403 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
82299431 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82299446 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:82307322 original size:27 final size:28
Alignment explanation
Indices: 82307292--82307361 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
82307282 ATAATAAGTC
*
82307292 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
82307319 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
82307347 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82307362 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:82310984 original size:40 final size:40
Alignment explanation
Indices: 82310902--82311108 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 40
82310892 GAAATTTAAT
* * * * * **
82310902 CGGATATAATGACTCACTCAAATGCCTTCGGGACGAAGCC
1 CGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGCC
* * * *
82310942 CGGTTATAGTGACTCGCACAATTGCCTTCGGGTCTTAACC
1 CGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGCC
* ** * *
82310982 CGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGCC
*
82311022 CGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCC
1 CGGATATAATAACTCGCAC-AATTGCCTTCGGGTCTTAGCC
* * * * *
82311062 CGGATATAATTATTAGCACAATTGCCTTCAGGACTTAGCC
1 CGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGCC
82311102 CGGATAT
1 CGGATAT
82311109 CATTCCAATG
Statistics
Matches: 138, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 2 0.01
40 134 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGCC
Found at i:82316490 original size:46 final size:46
Alignment explanation
Indices: 82316437--82316610 Score: 197
Period size: 46 Copynumber: 3.8 Consensus size: 46
82316427 TTTGGGCATT
*
82316437 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
*** * * ** *
82316483 CGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACGTC
* * *
82316530 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
* *
82316576 CGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82316611 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 69 0.66
47 35 0.34
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
Found at i:82316590 original size:93 final size:93
Alignment explanation
Indices: 82316431--82316602 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
82316421 AGGATATTTG
* * *
82316431 GGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
82316496 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
82316524 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
*
82316589 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
82316603 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:82319542 original size:93 final size:93
Alignment explanation
Indices: 82319427--82319597 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
82319417 GCCCCTAAGT
* *
82319427 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGATCTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
82319492 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
82319520 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
82319585 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82319598 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82319587 original size:46 final size:46
Alignment explanation
Indices: 82319422--82319594 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
82319412 AACCTGCCCC
* * *
82319422 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
82319468 TAAATGATCTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
82319516 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
82319561 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82319595 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:82336121 original size:36 final size:36
Alignment explanation
Indices: 82336081--82336153 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
82336071 AATACATAGA
82336081 AAACTTTGAATAAAGTTGCTCATATTTGACATATTT
1 AAACTTTGAATAAAGTTGCTCATATTTGACATATTT
82336117 AAACTTTGAATAAAGTTGCTCATATTTGACATATTT
1 AAACTTTGAATAAAGTTGCTCATATTTGACATATTT
82336153 A
1 A
82336154 TATTTAACAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41
Consensus pattern (36 bp):
AAACTTTGAATAAAGTTGCTCATATTTGACATATTT
Found at i:82339030 original size:32 final size:32
Alignment explanation
Indices: 82338994--82339056 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
82338984 GAGGGGGATG
*
82338994 GTGTCCTAGTTCAGAAACAGAGTCGAAGCTCA
1 GTGTCCTAATTCAGAAACAGAGTCGAAGCTCA
82339026 GTGTCCTAATTCAGAAACAGAGTCGAAGCTC
1 GTGTCCTAATTCAGAAACAGAGTCGAAGCTC
82339057 TCAAAATAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (32 bp):
GTGTCCTAATTCAGAAACAGAGTCGAAGCTCA
Found at i:82339323 original size:2 final size:2
Alignment explanation
Indices: 82339316--82339344 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
82339306 AGCAGTCAGC
82339316 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82339345 CCTATTCTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:82340256 original size:1 final size:1
Alignment explanation
Indices: 82340250--82340279 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
82340240 GTGCTTAGTG
*
82340250 TTTTTTTTTTTTTTTTTTTTTTTTTGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
82340280 AATATATTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.03, T:0.97
Consensus pattern (1 bp):
T
Found at i:82348131 original size:42 final size:42
Alignment explanation
Indices: 82348072--82348310 Score: 194
Period size: 42 Copynumber: 5.6 Consensus size: 42
82348062 AATTACGTGT
*
82348072 AAGACCATGTCTGGGACATCGACATCGTATCTGTTTTCGTAA
1 AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAA
* ** * * * **
82348114 AAGACCCTGTCTGGGACAGAGGCAACG-ATACTGAATTACGTGT
1 AAGACCATGTCTGGGACATCGGCATCGTAT-CTG-TTTTCGTAA
* * *
82348157 AAGACCATGTCTGGGACATCGACATAGTATCTATTTTCGTAA
1 AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAA
* ** * * * **
82348199 AAGACCCTGTCTGGGACAGAGGCAACG-ATACTGAATTACGTGT
1 AAGACCATGTCTGGGACATCGGCATCGTAT-CTG-TTTTCGTAA
* * *
82348242 AAGACCATGTCTGGAACATCGGCATCATATTTGTTTTCGTAA
1 AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAA
* **
82348284 AAGACCCTGTCTGGGACAGAGGCATCG
1 AAGACCATGTCTGGGACATCGGCATCG
82348311 ATACTGAATT
Statistics
Matches: 144, Mismatches: 47, Indels: 12
0.71 0.23 0.06
Matches are distributed among these distances:
41 4 0.03
42 80 0.56
43 56 0.39
44 4 0.03
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (42 bp):
AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAA
Found at i:82348351 original size:85 final size:85
Alignment explanation
Indices: 82348060--82348343 Score: 462
Period size: 85 Copynumber: 3.3 Consensus size: 85
82348050 GGTATTGATT
*
82348060 TGAATTACGTGTAAGACCATGTCTGGGACATCGACATCGTATCTGTTTTCGTAAAAGACCCTGTC
1 TGAATTACGTGTAAGACCATGTCTGGGACATCGACATCATATCTGTTTTCGTAAAAGACCCTGTC
82348125 TGGGACAGAGGCAACGATAC
66 TGGGACAGAGGCAACGATAC
*
82348145 TGAATTACGTGTAAGACCATGTCTGGGACATCGACAT-AGTATCTATTTTCGTAAAAGACCCTGT
1 TGAATTACGTGTAAGACCATGTCTGGGACATCGACATCA-TATCTGTTTTCGTAAAAGACCCTGT
82348209 CTGGGACAGAGGCAACGATAC
65 CTGGGACAGAGGCAACGATAC
* * *
82348230 TGAATTACGTGTAAGACCATGTCTGGAACATCGGCATCATATTTGTTTTCGTAAAAGACCCTGTC
1 TGAATTACGTGTAAGACCATGTCTGGGACATCGACATCATATCTGTTTTCGTAAAAGACCCTGTC
*
82348295 TGGGACAGAGGCATCGATAC
66 TGGGACAGAGGCAACGATAC
** * *
82348315 TGAATTATATGTAAGACCACGTTTGGGAC
1 TGAATTACGTGTAAGACCATGTCTGGGAC
82348344 GTCGGCATTG
Statistics
Matches: 185, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
85 184 0.99
86 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (85 bp):
TGAATTACGTGTAAGACCATGTCTGGGACATCGACATCATATCTGTTTTCGTAAAAGACCCTGTC
TGGGACAGAGGCAACGATAC
Found at i:82348881 original size:12 final size:13
Alignment explanation
Indices: 82348864--82348895 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
82348854 GCAAATGTTA
82348864 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
82348876 AGTTTTGATGCAT
1 AGTTTTGATGCAT
82348889 -GTTTTGA
1 AGTTTTGA
82348896 AATGTGTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:82349749 original size:49 final size:48
Alignment explanation
Indices: 82349694--82349907 Score: 161
Period size: 49 Copynumber: 4.5 Consensus size: 48
82349684 GTCGATGTCG
*
82349694 TGTCCCAGATAGGTCTTACACTGACTTTCATATATCGCGGCCGATGCCA
1 TGTCCCAGACAGGTCTTACACTGACTTTCATATATCG-GGCCGATGCCA
* * * ** * *
82349743 TGTCCCAGATAGGTTTTACACTGGCTCCCATTTATCGGTGTCGATGCCA
1 TGTCCCAGACAGGTCTTACACTGACTTTCATATATCGG-GCCGATGCCA
* **
82349792 TGTCCCAGACAGGTCTTATACT-AGCTTGT-ATATCCCGAGGCCGATG-CA
1 TGTCCCAGACAGGTCTTACACTGA-CTT-TCATATATCG-GGCCGATGCCA
* * * ** *
82349840 TGTCCCAGACATGTCTTACAGTGGCACTCAT-GAT-GTGGCCGATG-CA
1 TGTCCCAGACAGGTCTTACACTGACTTTCATATATCG-GGCCGATGCCA
* *
82349886 TGTCCTAGACATGTCTTACACT
1 TGTCCCAGACAGGTCTTACACT
82349908 AGCTCACATA
Statistics
Matches: 131, Mismatches: 28, Indels: 15
0.75 0.16 0.09
Matches are distributed among these distances:
46 31 0.24
47 1 0.01
48 25 0.19
49 73 0.56
50 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.29
Consensus pattern (48 bp):
TGTCCCAGACAGGTCTTACACTGACTTTCATATATCGGGCCGATGCCA
Found at i:82353671 original size:29 final size:29
Alignment explanation
Indices: 82353639--82353740 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
82353629 GGCAAATCTC
82353639 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
82353668 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
82353697 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
82353726 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
82353741 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:82353744 original size:29 final size:29
Alignment explanation
Indices: 82353613--82353744 Score: 146
Period size: 29 Copynumber: 4.7 Consensus size: 29
82353603 AGTTTGCTTT
* *
82353613 CGGCACTAAGTGTGCG-G--GCAAATCT-
1 CGGCACTAAGTGTGCGAGCTGGAAATATA
*
82353638 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAATATA
* *
82353667 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAATATA
* * *
82353696 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAATATA
**
82353725 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
82353745 CGGAGGGTAT
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
25 16 0.17
26 1 0.01
28 6 0.06
29 70 0.75
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.23
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:82361407 original size:29 final size:29
Alignment explanation
Indices: 82361374--82361475 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
82361364 TGACGAGATC
82361374 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
82361403 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
82361432 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
82361461 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
82361476 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:82374762 original size:49 final size:49
Alignment explanation
Indices: 82374688--82375092 Score: 697
Period size: 49 Copynumber: 8.3 Consensus size: 49
82374678 CCCTTCGGGA
82374688 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82374735 CTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82374784 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82374833 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82374882 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82374931 CTTATCACATATATAGACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82374980 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82375029 CTTATCACATATATTTACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82375078 CGTATCACATATATA
1 CTTATCACATATATA
82375093 CATCTCATAC
Statistics
Matches: 344, Mismatches: 12, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 10 0.03
48 1 0.00
49 333 0.97
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82378894 original size:40 final size:40
Alignment explanation
Indices: 82378850--82379077 Score: 413
Period size: 40 Copynumber: 5.7 Consensus size: 40
82378840 CCAGCATGAT
** * *
82378850 TGCTCTTTAGGACCTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
82378890 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
82378930 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
82378970 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
82379010 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
82379050 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
82379078 GTCGAGACTT
Statistics
Matches: 184, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
39 4 0.02
40 180 0.98
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:82379200 original size:38 final size:38
Alignment explanation
Indices: 82379131--82379205 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 38
82379121 GAATTTTAAT
*
82379131 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* * * *
82379169 CCGGACATAATTTCT-TCATATAGTCAGCGGGTTTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
82379206 AACTCGGATT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 1 0.03
38 30 0.97
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:82381557 original size:49 final size:49
Alignment explanation
Indices: 82381376--82381729 Score: 567
Period size: 49 Copynumber: 7.3 Consensus size: 49
82381366 CCCTTCGGGA
* * *
82381376 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
82381423 CCTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
82381470 CTTATCACATATAT--ACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
82381517 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
82381566 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
82381615 CTTATCACATATATAGACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
** *
82381664 CTTATCACATATATTTACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
82381713 CGTATCACATATATACA
1 CTTATCACATATATACA
82381730 TCTCATACAT
Statistics
Matches: 285, Mismatches: 16, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
45 2 0.01
46 1 0.00
47 89 0.31
48 2 0.01
49 191 0.67
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82384174 original size:32 final size:32
Alignment explanation
Indices: 82384138--82384199 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
82384128 ACAGCTAGGC
* * *
82384138 CCAACTAATACTGGTTCTGATATGGGCTAGCT
1 CCAACTAATACTGATTATGAGATGGGCTAGCT
*
82384170 CCAACTAATATTGATTATGAGATGGGCTAG
1 CCAACTAATACTGATTATGAGATGGGCTAG
82384200 GCCCAATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.31
Consensus pattern (32 bp):
CCAACTAATACTGATTATGAGATGGGCTAGCT
Found at i:82386651 original size:40 final size:39
Alignment explanation
Indices: 82386607--82386732 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
82386597 GGGACTCAAC
*
82386607 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
82386647 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
82386687 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
82386727 CCGGAT
1 CCGGAT
82386733 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:82386691 original size:80 final size:80
Alignment explanation
Indices: 82386546--82386732 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
82386536 GCTACACATT
* * *
82386546 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
82386610 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
82386626 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
82386689 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
82386707 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
82386733 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:82394660 original size:40 final size:39
Alignment explanation
Indices: 82394616--82394741 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
82394606 GGGACTCAAC
*
82394616 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
82394656 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
82394696 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
82394736 CCGGAT
1 CCGGAT
82394742 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:82394700 original size:80 final size:80
Alignment explanation
Indices: 82394555--82394741 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
82394545 GCTACACATT
* * *
82394555 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
82394619 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
82394635 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
82394698 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
82394716 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
82394742 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:82397354 original size:15 final size:14
Alignment explanation
Indices: 82397329--82397386 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 14
82397319 AGAATTCAAG
*
82397329 ATAAGGAAATCCATA
1 ATAAAGAAATCCA-A
*
82397344 ATAGAGAAATCCAGA
1 ATAAAGAAATCCA-A
*
82397359 ATATAGAAATCCAA
1 ATAAAGAAATCCAA
82397373 CATAAAGAAATCCA
1 -ATAAAGAAATCCA
82397387 GAAGAAAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
14 1 0.03
15 36 0.97
ACGTcount: A:0.55, C:0.16, G:0.12, T:0.17
Consensus pattern (14 bp):
ATAAAGAAATCCAA
Found at i:82401051 original size:16 final size:16
Alignment explanation
Indices: 82401030--82401062 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
82401020 TTTTCATTTA
82401030 TCATCTTACCATATTG
1 TCATCTTACCATATTG
82401046 TCATCTTACCATATTG
1 TCATCTTACCATATTG
82401062 T
1 T
82401063 TGTTCACATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.06, T:0.45
Consensus pattern (16 bp):
TCATCTTACCATATTG
Found at i:82401167 original size:131 final size:131
Alignment explanation
Indices: 82400933--82401177 Score: 490
Period size: 131 Copynumber: 1.9 Consensus size: 131
82400923 TGCTTAGTAA
82400933 GTTCACATGCAAATAGCAAGTAACACAACTATATAAGCAAACATAAAACATCATTTGCATAATCA
1 GTTCACATGCAAATAGCAAGTAACACAACTATATAAGCAAACATAAAACATCATTTGCATAATCA
82400998 TCACTGAGACACTCATATCACATTTTCATTTATCATCTTACCATATTGTCATCTTACCATATTGT
66 TCACTGAGACACTCATATCACATTTTCATTTATCATCTTACCATATTGTCATCTTACCATATTGT
82401063 T
131 T
82401064 GTTCACATGCAAATAGCAAGTAACACAACTATATAAGCAAACATAAAACATCATTTGCATAATCA
1 GTTCACATGCAAATAGCAAGTAACACAACTATATAAGCAAACATAAAACATCATTTGCATAATCA
82401129 TCACTGAGACACTCATATCACATTTTCATTTATCATCTTACCATATTGT
66 TCACTGAGACACTCATATCACATTTTCATTTATCATCTTACCATATTGT
82401178 TGTTATATCG
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
131 114 1.00
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32
Consensus pattern (131 bp):
GTTCACATGCAAATAGCAAGTAACACAACTATATAAGCAAACATAAAACATCATTTGCATAATCA
TCACTGAGACACTCATATCACATTTTCATTTATCATCTTACCATATTGTCATCTTACCATATTGT
T
Found at i:82401533 original size:46 final size:45
Alignment explanation
Indices: 82401386--82401525 Score: 113
Period size: 46 Copynumber: 3.1 Consensus size: 45
82401376 GTAACCCGCC
* * * * *
82401386 CATAAGTGAACTCAGACTCAACTCAATGAGCTCGG-ATGCCTAGTTA
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCCA--AA
*** * * **
82401432 CATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATC
1 CATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCCCAAA
*
82401479 CATAAGTGAACTCGGACTCAACTCAACGAGTTTGG-ATGCCCAAA
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCCAAA
82401523 CAT
1 CAT
82401526 CCTAGTGACA
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
44 8 0.11
46 31 0.42
47 30 0.41
49 4 0.05
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCCAAA
Found at i:82409174 original size:80 final size:79
Alignment explanation
Indices: 82409013--82409195 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 79
82409003 TGAATGATAT
* * * * *
82409013 CGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATTGT
1 CGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAATTGT
*
82409078 GCTAGTGGCTACATC
66 GCGAGT-GCTACATC
*
82409093 CGGGCTAAGTCCCGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGC-ATTCG
1 CGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAATT-G
*
82409157 TGCGAGT-CATTCTATC
65 TGCGAGTGC-TAC-ATC
*
82409173 CGGGCTAAGACCCGAAGG-CATTT
1 CGGGCTAAGTCCCG-AGGACATTT
82409196 GTGCAAATCG
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 5 0.06
80 81 0.90
81 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAATTGT
GCGAGTGCTACATC
Found at i:82409215 original size:40 final size:40
Alignment explanation
Indices: 82409045--82409199 Score: 186
Period size: 40 Copynumber: 3.9 Consensus size: 40
82409035 AATGCTGGAA
* * *
82409045 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTC
** * * * *
82409085 GCTACATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTA
1 ATTATATCCGGGCTAAGACCCGAAGG-CATTTGTGCTAGTC
* *
82409125 ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTC
*
82409165 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGC
82409200 AAATCGTGAT
Statistics
Matches: 95, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
39 3 0.03
40 89 0.94
41 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTC
Found at i:82417130 original size:80 final size:79
Alignment explanation
Indices: 82416969--82417151 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 79
82416959 GAATGATATT
* * * * *
82416969 CGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATTGT
1 CGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAATTGT
*
82417034 GCTAGTGGCTACATC
66 GCGAGT-GCTACATC
*
82417049 CGGGCTAAGTCCCGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGC-ATTCG
1 CGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAATT-G
*
82417113 TGCGAGT-CATTCTATC
65 TGCGAGTGC-TAC-ATC
*
82417129 CGGGCTAAGACCCGAAGG-CATTT
1 CGGGCTAAGTCCCG-AGGACATTT
82417152 GTGCAAATCG
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 5 0.06
80 81 0.90
81 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAATTGT
GCGAGTGCTACATC
Found at i:82417170 original size:40 final size:40
Alignment explanation
Indices: 82417001--82417155 Score: 186
Period size: 40 Copynumber: 3.9 Consensus size: 40
82416991 AATGCTGGAA
* * *
82417001 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTC
** * * * *
82417041 GCTACATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTA
1 ATTATATCCGGGCTAAGACCCGAAGG-CATTTGTGCTAGTC
* *
82417081 ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTC
*
82417121 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGC
82417156 AAATCGTGAT
Statistics
Matches: 95, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
39 3 0.03
40 89 0.94
41 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTC
Found at i:82421280 original size:30 final size:29
Alignment explanation
Indices: 82421246--82421305 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 29
82421236 TTCCCGAGCC
*
82421246 TAGGGGCAAAAGTGTAAATATGTAAAAGTT
1 TAGGGGCAAAAGTGT-AATATGAAAAAGTT
* *
82421276 TAGGGGCAAAATTGTAATTTGAAAAAGTT
1 TAGGGGCAAAAGTGTAATATGAAAAAGTT
82421305 T
1 T
82421306 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 13 0.48
30 14 0.52
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.30
Consensus pattern (29 bp):
TAGGGGCAAAAGTGTAATATGAAAAAGTT
Found at i:82425440 original size:29 final size:29
Alignment explanation
Indices: 82425407--82425538 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
82425397 GTGACGAGAT
82425407 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
82425436 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
82425465 TGACACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
82425494 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
82425523 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
82425539 GGCTTAAATT
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 87 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:82428456 original size:28 final size:28
Alignment explanation
Indices: 82428424--82428481 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
82428414 AATATTGATG
*
82428424 AGAAAAAGAAAGCCATTGAAGCTTCCTT
1 AGAAAAACAAAGCCATTGAAGCTTCCTT
82428452 AGAAAAACAAAGCCATTGAAGCTTCCTT
1 AGAAAAACAAAGCCATTGAAGCTTCCTT
82428480 AG
1 AG
82428482 TTTTGGCACT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (28 bp):
AGAAAAACAAAGCCATTGAAGCTTCCTT
Found at i:82430656 original size:13 final size:13
Alignment explanation
Indices: 82430640--82430665 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82430630 ATATGTTTTA
82430640 TGATTGTTTTGGT
1 TGATTGTTTTGGT
82430653 TGATTGTTTTGGT
1 TGATTGTTTTGGT
82430666 ATGGGTTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TGATTGTTTTGGT
Found at i:82439324 original size:40 final size:40
Alignment explanation
Indices: 82439269--82439350 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
82439259 CTTATGTTTT
82439269 ATGACATGCTGATCATTTTTCCCTTCTATAGCAACATCAA
1 ATGACATGCTGATCATTTTTCCCTTCTATAGCAACATCAA
*
82439309 ATGACATGTTGATCATTTTTCCCTTCTATAGCAACATCAA
1 ATGACATGCTGATCATTTTTCCCTTCTATAGCAACATCAA
82439349 AT
1 AT
82439351 TCACACTCTA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (40 bp):
ATGACATGCTGATCATTTTTCCCTTCTATAGCAACATCAA
Found at i:82441021 original size:24 final size:25
Alignment explanation
Indices: 82440994--82441045 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
82440984 GCCTAGCCTC
82440994 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
82441018 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
82441043 TTT
1 TTT
82441046 AGCACTTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:82443189 original size:37 final size:37
Alignment explanation
Indices: 82443139--82443214 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
82443129 TGATTTGGGT
82443139 TAGTTTTAATAGATAGTTAAAAATGTCAAGTTGTTGC
1 TAGTTTTAATAGATAGTTAAAAATGTCAAGTTGTTGC
82443176 TAGTTTTAATAGATAGTTAAAAATGTCAAGTTGTTGC
1 TAGTTTTAATAGATAGTTAAAAATGTCAAGTTGTTGC
82443213 TA
1 TA
82443215 ATATCAATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.36, C:0.05, G:0.18, T:0.41
Consensus pattern (37 bp):
TAGTTTTAATAGATAGTTAAAAATGTCAAGTTGTTGC
Found at i:82449049 original size:41 final size:41
Alignment explanation
Indices: 82449004--82449121 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
82448994 TGAAAGATAA
82449004 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
82449045 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
82449075 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
82449116 ATGTAG
1 ATGTAG
82449122 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Done.