Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 267 of 410
Found at i:82449060 original size:71 final size:71
Alignment explanation
Indices: 82448972--82449135 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
82448962 GAGATGTATC
82448972 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82449037 AGGACA
66 AGGACA
82449043 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82449108 AGGACA
66 AGGACA
82449114 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
82449136 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:82459777 original size:94 final size:97
Alignment explanation
Indices: 82459616--82459865 Score: 253
Period size: 98 Copynumber: 2.6 Consensus size: 97
82459606 TATGTGTGCT
* * * * * * * * *
82459616 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC-A-TTTTGAGAGCCAATGTAAGACATGTCT
1 AGTGTAAGACATGTCTGGGACATAGCATTGACCTCGAGATATGAAAGCTAGTGTAAGACCTGTCT
** *
82459678 GGGACATG-CATCGACATTG-AGAAGAGAGCT
66 GGGACATGACATCGACACCGAAGAAGAGAGCC
* *
82459708 AGTGTAAGAGATGTTTGGGACA-AGCATTGACCTCGAGATAT-ACAAGCTAGTGTAAGACCTGTC
1 AGTGTAAGACATGTCTGGGACATAGCATTGACCTCGAGATATGA-AAGCTAGTGTAAGACCTGTC
*
82459771 TGGGACATGACATCGACACCGATAGATGAGAGCC
65 TGGGACATGACATCGACACCGA-AGAAGAGAGCC
* * * * *
82459805 AGTGTAAGACCTGTCTGGGACATGGCATTGACCTTGATATATGAAAGTTAGTGTAAGACCT
1 AGTGTAAGACATGTCTGGGACATAGCATTGACCTCGAGATATGAAAGCTAGTGTAAGACCT
82459866 ATTTAGGACA
Statistics
Matches: 127, Mismatches: 22, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
92 28 0.22
93 2 0.02
94 27 0.21
95 9 0.07
97 28 0.22
98 32 0.25
99 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.24
Consensus pattern (97 bp):
AGTGTAAGACATGTCTGGGACATAGCATTGACCTCGAGATATGAAAGCTAGTGTAAGACCTGTCT
GGGACATGACATCGACACCGAAGAAGAGAGCC
Found at i:82459812 original size:49 final size:48
Alignment explanation
Indices: 82459616--82459837 Score: 179
Period size: 46 Copynumber: 4.7 Consensus size: 48
82459606 TATGTGTGCT
* **
82459616 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AT-TTTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACGATAGATGAGAGCC
* * * *
82459662 AATGTAAGACATGTCTGGGACATGCATCGA-CA--TTGAGAAGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACGAT-AGATGAGAGCC
* * * * * * * * *
82459708 AGTGTAAGAGATGTTTGGGACAAGCATTGACCTCGAGATAT-ACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACGATAGATGA-GAGCC
*
82459756 AGTGTAAGACCTGTCTGGGACATGACATCGA-CACCGATAGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATG-CATCGACCA-CGATAGATGAGAGCC
* *
82459805 AGTGTAAGACCTGTCTGGGACATGGCATTGACC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGACC
82459838 TTGATATATG
Statistics
Matches: 136, Mismatches: 29, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 59 0.43
47 2 0.01
48 27 0.20
49 42 0.31
50 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACGATAGATGAGAGCC
Found at i:82459858 original size:49 final size:49
Alignment explanation
Indices: 82459613--82459927 Score: 213
Period size: 49 Copynumber: 6.6 Consensus size: 49
82459603 TGATATGTGT
* * * * *
82459613 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCC---ACATTTTGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGAGA-TATGAAA
* * * * *
82459659 GCCAATGTAAGACATGTCTGGGACAT-GCATCGACATTGAGA-A-GAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGAGATATGAAA
** * * * *
82459705 GCTAGTGTAAGAGATGTTTGGGACA-AGCATTGACCTCGAGATAT-ACAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGAGATATGA-AA
* * * * *
82459753 GCTAGTGTAAGACCTGTCTGGGACATGACATCGACAC-CGATAGATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTTGAGATATGAAA
* * *
82459802 GCCAGTGTAAGACCTGTCTGGGACATGGCATTGACCTTGATATATGAAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGAGATATGAAA
* * * * * * * **
82459851 GTTAGTGTAAGACCTATTTAGGACATGGCATC-AACTT-TGATGTGCTA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGAGATATGAAA
82459898 GCTAGTGTAAGACCATGTCTGGGACATGGC
1 GCTAGTGTAAGACC-TGTCTGGGACATGGC
82459928 TTTGGCATCT
Statistics
Matches: 212, Mismatches: 45, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
46 68 0.32
47 20 0.09
48 40 0.19
49 82 0.39
50 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.25
Consensus pattern (49 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTTGAGATATGAAA
Found at i:82459864 original size:98 final size:97
Alignment explanation
Indices: 82459664--82459927 Score: 279
Period size: 98 Copynumber: 2.7 Consensus size: 97
82459654 TGAGAGCCAA
* * ** *
82459664 TGTAAGACATGTCTGGGACATGCATCGACATTG--AGAAGAGAGCTAGTGTAAGAGATGTTTGGG
1 TGTAAGACCTGTCTGGGACATGCATCGACATTGATAGATGAGAGCTAGTGTAAGACCTGTCTGGG
*
82459727 ACA-AGCATTGACCTCGAGATATACAAGCTAG
66 ACATGGCATTGACCTCGAGATATACAAGCTAG
** *
82459758 TGTAAGACCTGTCTGGGACATGACATCGACACCGATAGATGAGAGCCAGTGTAAGACCTGTCTGG
1 TGTAAGACCTGTCTGGGACATG-CATCGACATTGATAGATGAGAGCTAGTGTAAGACCTGTCTGG
* * *
82459823 GACATGGCATTGACCTTGATATATGA-AAGTTAG
65 GACATGGCATTGACCTCGAGATAT-ACAAGCTAG
* * * * * **
82459856 TGTAAGACCTATTTAGGACATGGCATCAACTTTGAT-G-TGCTAGCTAGTGTAAGACCATGTCTG
1 TGTAAGACCTGTCTGGGACAT-GCATCGACATTGATAGATGAGAGCTAGTGTAAGACC-TGTCTG
82459919 GGACATGGC
64 GGACATGGC
82459928 TTTGGCATCT
Statistics
Matches: 141, Mismatches: 22, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
94 21 0.15
95 9 0.06
96 16 0.11
97 44 0.31
98 49 0.35
99 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (97 bp):
TGTAAGACCTGTCTGGGACATGCATCGACATTGATAGATGAGAGCTAGTGTAAGACCTGTCTGGG
ACATGGCATTGACCTCGAGATATACAAGCTAG
Found at i:82462456 original size:29 final size:29
Alignment explanation
Indices: 82462422--82462526 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 29
82462412 TACTCGATTT
* * *
82462422 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
82462451 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
82462480 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
82462509 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
82462527 TATTTCCAGC
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:82462514 original size:58 final size:59
Alignment explanation
Indices: 82462460--82462582 Score: 178
Period size: 58 Copynumber: 2.1 Consensus size: 59
82462450 CCGCACACAC
* *
82462460 AGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
* * * *
82462518 AGTGCCATATATTTCCAGCAT-GCACACTCAGTGCCATATTTTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
82462576 AGTGCCA
1 AGTGCCA
82462583 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
58 57 0.98
59 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.28
Consensus pattern (59 bp):
AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
Found at i:82462527 original size:29 final size:29
Alignment explanation
Indices: 82462481--82462582 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
82462471 CTTCGAGCTC
82462481 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
82462510 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
82462539 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
82462568 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
82462583 ATCTCGTCAC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:82470418 original size:29 final size:29
Alignment explanation
Indices: 82470384--82470488 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 29
82470374 TACTCGATTT
* * *
82470384 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
82470413 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
82470442 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
82470471 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
82470489 TATTTCCAGC
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:82470476 original size:58 final size:59
Alignment explanation
Indices: 82470422--82470544 Score: 178
Period size: 58 Copynumber: 2.1 Consensus size: 59
82470412 CCGCACACAC
* *
82470422 AGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
* * * *
82470480 AGTGCCATATATTTCCAGCAT-GCACACTCAGTGCCATATTTTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
82470538 AGTGCCA
1 AGTGCCA
82470545 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
58 57 0.98
59 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.28
Consensus pattern (59 bp):
AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
Found at i:82470489 original size:29 final size:29
Alignment explanation
Indices: 82470443--82470544 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
82470433 CTTCGAGCTC
82470443 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
82470472 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
82470501 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
82470530 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
82470545 ATCTCGTCAC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:82475330 original size:14 final size:14
Alignment explanation
Indices: 82475311--82475343 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
82475301 ATCTGAGAAG
82475311 TATGTTTGGTCATA
1 TATGTTTGGTCATA
82475325 TATGTTTGGTCATA
1 TATGTTTGGTCATA
82475339 TATGT
1 TATGT
82475344 GTGTCTTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.21, C:0.06, G:0.21, T:0.52
Consensus pattern (14 bp):
TATGTTTGGTCATA
Found at i:82478128 original size:43 final size:42
Alignment explanation
Indices: 82478077--82478222 Score: 134
Period size: 42 Copynumber: 3.4 Consensus size: 42
82478067 TCCCAGATGT
* *
82478077 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACACGTAATCAAATA-CGATGCCAATGTCCCAGACAG
* * * * *
82478120 GGTCTTACACGAAATCAAATACGATGCTAATGTTCCAGGCAT
1 GGTCTTACACGTAATCAAATACGATGCCAATGTCCCAGACAG
* *
82478162 GGTCTTACACGTAAATCTCAAAT-CGATGACAACGTCCCAGAC-G
1 GGTCTTACACGT-AA--TCAAATACGATGCCAATGTCCCAGACAG
* *
82478205 TGGTCATACACGAAATCA
1 -GGTCTTACACGTAATCA
82478223 CATATCGGAA
Statistics
Matches: 83, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
41 3 0.04
42 27 0.33
43 23 0.28
44 24 0.29
45 6 0.07
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGTAATCAAATACGATGCCAATGTCCCAGACAG
Found at i:82478166 original size:42 final size:41
Alignment explanation
Indices: 82478067--82478222 Score: 143
Period size: 43 Copynumber: 3.7 Consensus size: 41
82478057 AATGTCAACA
** * * *
82478067 TCCCAGATGTGGTCTTACATGTAATCAAATATCGATGCCACTG
1 TCCCAGACATGGTCTTACACGAAATCAAATA-CGATG-CAATG
*
82478110 TCCCAGACAGGGTCTTACACGAAATCAAATACGATGCTAATG
1 TCCCAGACATGGTCTTACACGAAATCAAATACGATGC-AATG
* * *
82478152 TTCCAGGCATGGTCTTACACGTAAATCTCAAAT-CGATGACAACG
1 TCCCAGACATGGTCTTACACG-AAA--TCAAATACGATG-CAATG
* *
82478196 TCCCAGACGTGGTCATACACGAAATCA
1 TCCCAGACATGGTCTTACACGAAATCA
82478223 CATATCGGAA
Statistics
Matches: 94, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
41 4 0.04
42 26 0.28
43 32 0.34
44 25 0.27
45 7 0.07
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (41 bp):
TCCCAGACATGGTCTTACACGAAATCAAATACGATGCAATG
Found at i:82480335 original size:13 final size:13
Alignment explanation
Indices: 82480317--82480366 Score: 91
Period size: 13 Copynumber: 3.8 Consensus size: 13
82480307 CAACACATAT
82480317 GCCCGTGTGGCTA
1 GCCCGTGTGGCTA
82480330 GCCCGTGTGGCTA
1 GCCCGTGTGGCTA
82480343 GCCCGTGTGGCTA
1 GCCCGTGTGGCTA
*
82480356 GCCTGTGTGGC
1 GCCCGTGTGGC
82480367 CTAAAAATGG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 36 1.00
ACGTcount: A:0.06, C:0.30, G:0.40, T:0.24
Consensus pattern (13 bp):
GCCCGTGTGGCTA
Found at i:82483735 original size:49 final size:49
Alignment explanation
Indices: 82483663--82483856 Score: 194
Period size: 50 Copynumber: 3.9 Consensus size: 49
82483653 GCCGAAGCTA
* *
82483663 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* * *
82483712 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAACAG
* ** * * * *
82483762 TGTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ATAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* * *
82483810 TTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 ---TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
82483857 TCACAATAGA
Statistics
Matches: 119, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 38 0.32
50 40 0.34
51 39 0.33
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (49 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
Found at i:82483847 original size:101 final size:99
Alignment explanation
Indices: 82483674--82483860 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 99
82483664 CTGGTACGCA
* * *
82483674 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
*
82483739 GTACTACACACGTGACCTCACCATGTAATACACG
66 GTACTACACACGCGACCTCACCATGTAATACACG
* * * *
82483773 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ATAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGCAC
*
82483837 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
82483861 AATAGATCAT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
98 3 0.04
99 30 0.39
101 43 0.57
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATGTAATACACG
Found at i:82486306 original size:27 final size:27
Alignment explanation
Indices: 82486268--82486324 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
82486258 ATAACGTATT
* *
82486268 TTCCTTTTTAATGAGTTGAGCAGAACA
1 TTCCTTTTTAATGAGTGGAACAGAACA
*
82486295 TTCCTTTTTAATGAGTGGAACGGAACA
1 TTCCTTTTTAATGAGTGGAACAGAACA
82486322 TTC
1 TTC
82486325 TCCTATTCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (27 bp):
TTCCTTTTTAATGAGTGGAACAGAACA
Found at i:82493385 original size:55 final size:55
Alignment explanation
Indices: 82493285--82493402 Score: 132
Period size: 55 Copynumber: 2.1 Consensus size: 55
82493275 ATGCCAAAAC
* * * * *
82493285 AACACGGGCGTGTGACATGCCTGTGCCTTGAACCTGTGGCTGAACCTGTCAAATT
1 AACACGGGCGTGCGACACGCCCGTGCCGTGAACCTGTGGCTGAACCTATCAAATT
* * *
82493340 AGCACGGGCGTGCGACACGCCCGTGCCAAGTGAACGTG-GGC-GAACCTATTAAATT
1 AACACGGGCGTGCGACACGCCCGTGCC--GTGAACCTGTGGCTGAACCTATCAAATT
82493395 AACACGGG
1 AACACGGG
82493403 TGTGGGCTTA
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
55 42 0.81
56 3 0.06
57 7 0.13
ACGTcount: A:0.25, C:0.26, G:0.30, T:0.19
Consensus pattern (55 bp):
AACACGGGCGTGCGACACGCCCGTGCCGTGAACCTGTGGCTGAACCTATCAAATT
Found at i:82495695 original size:16 final size:16
Alignment explanation
Indices: 82495676--82495706 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82495666 CTTCTTCACT
82495676 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
82495692 TACTTACTTACTTAA
1 TACTCACTTACTTAA
82495707 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:82495712 original size:20 final size:20
Alignment explanation
Indices: 82495673--82495712 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
82495663 AAACTTCTTC
* *
82495673 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
82495693 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
82495713 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:82496084 original size:54 final size:52
Alignment explanation
Indices: 82495950--82496149 Score: 208
Period size: 53 Copynumber: 3.7 Consensus size: 52
82495940 ATCCTTTTGA
* *
82495950 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGG-AGCCTTGCCTTATG
* * *
82496003 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGG-GCCTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGAGCC-TTGCCTTAT-G
* *
82496056 TAACTTATCAATGCCATGTCTTGACATGGTCTTACAT-GATTTCCTTGCCTTA-G
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGA--GCCTTGCCTTATG
* * *
82496109 AAATCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGG
1 -AA-CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGG
82496150 TATCCTTAAA
Statistics
Matches: 123, Mismatches: 15, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
51 2 0.02
52 9 0.07
53 39 0.32
54 39 0.32
55 31 0.25
56 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (52 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGAGCCTTGCCTTATG
Found at i:82496105 original size:107 final size:109
Alignment explanation
Indices: 82495950--82496149 Score: 316
Period size: 107 Copynumber: 1.9 Consensus size: 109
82495940 ATCCTTTTGA
* *
82495950 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAATCTCACCAA
82496013 -TGCCATGCCTTGGCATGGTCTTACATGGGCCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGCCTTTGCCTTATAGT
* * *
82496057 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAATCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAATCTCACCAAT
*
82496122 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
82496150 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
106 1 0.01
107 49 0.58
108 7 0.08
109 27 0.32
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (109 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAATCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGCCTTTGCCTTATAGT
Found at i:82499400 original size:13 final size:13
Alignment explanation
Indices: 82499382--82499408 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82499372 AAGAAGTTAA
82499382 ATTCCATATTCTG
1 ATTCCATATTCTG
82499395 ATTCCATATTCTG
1 ATTCCATATTCTG
82499408 A
1 A
82499409 GAAGCTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (13 bp):
ATTCCATATTCTG
Found at i:82502020 original size:13 final size:13
Alignment explanation
Indices: 82502002--82502028 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82501992 ATGAATTTTA
82502002 CATAATTAGGCAT
1 CATAATTAGGCAT
82502015 CATAATTAGGCAT
1 CATAATTAGGCAT
82502028 C
1 C
82502029 TGCTCCAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (13 bp):
CATAATTAGGCAT
Found at i:82507931 original size:28 final size:28
Alignment explanation
Indices: 82507900--82508116 Score: 238
Period size: 29 Copynumber: 7.6 Consensus size: 28
82507890 GTGACGAGAT
82507900 TGGCACTAAGTGTGCGTGCTGGAAATTA
1 TGGCACTAAGTGTGCGTGCTGGAAATTA
82507928 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-TA
*
82507957 TGGCACTAAGTGTGCGTGCTGGAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATTA
82507985 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-TA
** *
82508014 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGG-AAATTA
* ** * ***
82508043 CGGCACTGGGTGTGCGAGCTCGGAGGGTA
1 TGGCACTAAGTGTGCGTGCT-GGAAATTA
** * *
82508072 TGGCACTGTGTGTGCGGGCT-TAAATTA
1 TGGCACTAAGTGTGCGTGCTGGAAATTA
82508099 CGTGGCACTAAGTGTGCG
1 --TGGCACTAAGTGTGCG
82508117 AAATCGAGTA
Statistics
Matches: 162, Mismatches: 21, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
27 3 0.02
28 53 0.33
29 101 0.62
30 5 0.03
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGTGCTGGAAATTA
Found at i:82507968 original size:29 final size:29
Alignment explanation
Indices: 82507900--82508058 Score: 250
Period size: 29 Copynumber: 5.6 Consensus size: 29
82507890 GTGACGAGAT
82507900 TGGCACTAAGTGTGCGTGCTGGAAAT-TA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
82507928 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
82507957 TGGCACTAAGTGTGCGTGCTGGAAA-ATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
82507985 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
82508014 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
82508043 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
82508059 AGCTCGGAGG
Statistics
Matches: 122, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
28 54 0.44
29 68 0.56
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:82507969 original size:57 final size:57
Alignment explanation
Indices: 82507900--82508058 Score: 255
Period size: 57 Copynumber: 2.8 Consensus size: 57
82507890 GTGACGAGAT
*
82507900 TGGCACTAAGTGTGCGTGCTGGAAATTATGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAATATGGCACTAAGTGTGCGTGCTGGAAATATA
82507957 TGGCACTAAGTGTGCGTGCTGGAAAATATGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAATATGGCACTAAGTGTGCGTGCTGGAAATATA
** * **
82508014 TGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCGTGCTGG-AAAATATGGCACTAAGTGTGCG
82508059 AGCTCGGAGG
Statistics
Matches: 95, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
57 76 0.80
58 19 0.20
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.25
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGTGCTGGAAAATATGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:82512243 original size:41 final size:41
Alignment explanation
Indices: 82512198--82512315 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
82512188 TGAAAGATAA
82512198 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
82512239 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
82512269 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
82512310 ATGTAG
1 ATGTAG
82512316 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:82512254 original size:71 final size:71
Alignment explanation
Indices: 82512166--82512329 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
82512156 GAGATGTATC
82512166 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82512231 AGGACA
66 AGGACA
82512237 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82512302 AGGACA
66 AGGACA
82512308 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
82512330 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:82519778 original size:41 final size:41
Alignment explanation
Indices: 82519733--82519850 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
82519723 TGAAAGATAA
82519733 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
82519774 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
82519804 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
82519845 ATGTAG
1 ATGTAG
82519851 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:82519789 original size:71 final size:71
Alignment explanation
Indices: 82519701--82519864 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
82519691 GAGATGTATC
82519701 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82519766 AGGACA
66 AGGACA
82519772 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82519837 AGGACA
66 AGGACA
82519843 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
82519865 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:82527323 original size:71 final size:71
Alignment explanation
Indices: 82527235--82527398 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
82527225 GAGATGTATC
82527235 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
82527300 AGGACA
66 AGGACA
82527306 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
82527371 CGGACA
66 AGGACA
82527377 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
82527399 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:82533206 original size:53 final size:51
Alignment explanation
Indices: 82533116--82533693 Score: 303
Period size: 53 Copynumber: 10.8 Consensus size: 51
82533106 TAATAAAGGG
* *
82533116 AAATTACCAAAATACCCCCGATTGTAAAATTACCGAAATACCCCTAGTTGTA
1 AAATTACC-AAATACCCCTGTTTGTAAAATTACCGAAATACCCCTAGTTGTA
82533168 AAATTACCAAAGTACCCCATGTTTGTAAAATTACCGAAATATCCCC-AGTTTGTA
1 AAATTACCAAA-TACCCC-TGTTTGTAAAATTACCGAAATA-CCCCTAG-TTGTA
* * ** *
82533222 AAATTACCGAAATACCCTCAGTTTGCAAAATTACTAAAATA-CCCTTGTTTTGTA
1 AAATTACC-AAATACCC-CTGTTTGTAAAATTACCGAAATACCCCTAG--TTGTA
** * * * *
82533276 AAATTATTGAAATA-CCGTCGTTTGTAAAATTACTGAAATACCCTCAATTTGTA
1 AAATTA-CCAAATACCCCT-GTTTGTAAAATTACCGAAATACCC-CTAGTTGTA
* * ** * *
82533329 AAATTACCGAAATA-CCCTCGATTGTCAAATTACTAAAATACCCTCGATTTGTA
1 AAATTACC-AAATACCCCT-GTTTGTAAAATTACCGAAATACCC-CTAGTTGTA
* * * * ** *
82533382 AAATTATCAAAATATCCCTAATTTGTAAAATTACCGAAATA-ACCTCAACTGTG
1 AAATTA-CCAAATACCCCT-GTTTGTAAAATTACCGAAATACCCCT-AGTTGTA
* * * *
82533435 AAATTATCAAAATACCCTTGATTTGTAAAATTACCGAAATA-CCCTCGATTGTG
1 AAATTA-CCAAATACCCCTG-TTTGTAAAATTACCGAAATACCCCTAG-TTGTA
* * ** * * *
82533488 AAAGTACTGAAATACCATTGATTTGTAAAATTACCAAAATA-CCCTCGATTCATA
1 AAATTAC-CAAATACCCCTG-TTTGTAAAATTACCGAAATACCCCTAG-TT-GTA
* * * * *
82533542 AAATTATCGAAATA-CCCTCGTTTTGTAAAATTACCAAAATACTCTCAATTTGTA
1 AAATTA-CCAAATACCCCT-G-TTTGTAAAATTACCGAAATAC-CCCTAGTTGTA
* * * * *
82533596 AAATTACTAAAACACCCCCGATTTGTAAAATTATCGAAATA-CCCTTGTAGTGTA
1 AAATTAC-CAAATACCCCTG-TTTGTAAAATTACCGAAATACCCCTAGT--TGTA
* * * *
82533650 AAATTATCGAAATACCCTTGTAATGTAAAATGACC-AACATACCC
1 AAATTA-CCAAATACCCCTGT-TTGTAAAATTACCGAA-ATACCC
82533694 TTGTAGGGTA
Statistics
Matches: 420, Mismatches: 74, Indels: 61
0.76 0.13 0.11
Matches are distributed among these distances:
51 3 0.01
52 22 0.05
53 204 0.49
54 175 0.42
55 14 0.03
56 2 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (51 bp):
AAATTACCAAATACCCCTGTTTGTAAAATTACCGAAATACCCCTAGTTGTA
Found at i:82533230 original size:80 final size:77
Alignment explanation
Indices: 82533116--82533693 Score: 397
Period size: 80 Copynumber: 7.2 Consensus size: 77
82533106 TAATAAAGGG
82533116 AAATTACCAAAATACCCCCGA-TTGTAAAATTACCGAAATACCCCTAGTTGTAAAATTACCAAAG
1 AAATTACCAAAATA-CCCCGATTTGTAAAATTACCGAAATACCCCTAGTTGTAAAATTACCAAA-
82533180 TACCCCATGTTTGTA
64 TA-CCCATGTTTGTA
* * *
82533195 AAATTACCGAAATATCCCC-AGTTTGTAAAATTACCGAAATA-CCCTCAGTTTGCAAAATTACTA
1 AAATTACCAAAATA-CCCCGA-TTTGTAAAATTACCGAAATACCCCT-AG-TTGTAAAATTAC-C
*
82533258 AAATACCCTTGTTTTGTA
61 AAATACCCATG-TTTGTA
*** * * * *
82533276 AAATTATTGAAATACCGTCG-TTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACCGAA
1 AAATTACCAAAATACC-CCGATTTGTAAAATTACCGAAATACCC-CTAGTTGTAAAATTACC-AA
* *
82533340 ATACCC-TCGATTGTC
63 ATACCCAT-GTTTGTA
* * * * *
82533355 AAATTACTAAAATACCCTCGATTTGTAAAATTATCAAAATATCCCTAATTTGTAAAATTACCGAA
1 AAATTACCAAAATACCC-CGATTTGTAAAATTACCGAAATACCCCT-AGTTGTAAAATTACC-AA
** *
82533420 ATAACCTCA--ACTGTG
63 AT-ACC-CATGTTTGTA
* * * * * *
82533435 AAATTATCAAAATACCCTTGATTTGTAAAATTACCGAAATA-CCCTCGATTGTGAAAGTACTGAA
1 AAATTACCAAAATACCC-CGATTTGTAAAATTACCGAAATACCCCTAG-TTGTAAAATTAC-CAA
82533499 ATA-CCATTGATTTGTA
63 ATACCCA-TG-TTTGTA
** * *
82533515 AAATTACCAAAATACCCTCGATTCATAAAATTATCGAAATACCCTCGT-TTTGTAAAATTACCAA
1 AAATTACCAAAATACCC-CGATTTGTAAAATTACCGAAATACCC-C-TAGTTGTAAAATTACC-A
*
82533579 AATACTCTCA-ATTTGTA
62 AATAC-C-CATGTTTGTA
* * * * *
82533596 AAATTACTAAAACACCCCCGATTTGTAAAATTATCGAAATA-CCCTTGTAGTGTAAAATTATCGA
1 AAATTACCAAAATA-CCCCGATTTGTAAAATTACCGAAATACCCCTAGT--TGTAAAATTA-CCA
* *
82533660 AATACCCTTGTAATGTA
62 AATACCCATGT-TTGTA
* *
82533677 AAATGACCAACATACCC
1 AAATTACCAAAATACCC
82533694 TTGTAGGGTA
Statistics
Matches: 400, Mismatches: 61, Indels: 75
0.75 0.11 0.14
Matches are distributed among these distances:
76 2 0.00
77 1 0.00
78 3 0.01
79 64 0.16
80 192 0.48
81 124 0.31
82 10 0.03
83 2 0.00
84 2 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (77 bp):
AAATTACCAAAATACCCCGATTTGTAAAATTACCGAAATACCCCTAGTTGTAAAATTACCAAATA
CCCATGTTTGTA
Found at i:82533667 original size:27 final size:27
Alignment explanation
Indices: 82533116--82533707 Score: 360
Period size: 27 Copynumber: 22.1 Consensus size: 27
82533106 TAATAAAGGG
* **
82533116 AAATTACCAAAATACCCCCG-ATTGTA
1 AAATTACCGAAATACCCTTGTATTGTA
*
82533142 AAATTACCGAAATACCC--CTAGTTGTA
1 AAATTACCGAAATACCCTTGTA-TTGTA
*
82533168 AAATTACC-AAAGTACCCCATGT-TTGTA
1 AAATTACCGAAA-TA-CCCTTGTATTGTA
**
82533195 AAATTACCGAAATATCCCCAGT-TTGTA
1 AAATTACCGAAATA-CCCTTGTATTGTA
* *
82533222 AAATTACCGAAATACCCTCAGT-TTGCA
1 AAATTACCGAAATACCCT-TGTATTGTA
** *
82533249 AAATTACTAAAATACCCTTGTTTTGTA
1 AAATTACCGAAATACCCTTGTATTGTA
** * *
82533276 AAATTATTGAAATACCGTCGT-TTGTA
1 AAATTACCGAAATACCCTTGTATTGTA
* **
82533302 AAATTACTGAAATACCC-TCAATTTGTA
1 AAATTACCGAAATACCCTTGTA-TTGTA
* *
82533329 AAATTACCGAAATACCCTCG-ATTGTC
1 AAATTACCGAAATACCCTTGTATTGTA
** *
82533355 AAATTACTAAAATACCCTCG-ATTTGTA
1 AAATTACCGAAATACCCTTGTA-TTGTA
* * **
82533382 AAATTATCAAAATATCCCTAAT-TTGTA
1 AAATTACCGAAATA-CCCTTGTATTGTA
* ** * *
82533409 AAATTACCGAAATAACC-TCAACTGTG
1 AAATTACCGAAATACCCTTGTATTGTA
* *
82533435 AAATTATCAAAATACCCTTG-ATTTGTA
1 AAATTACCGAAATACCCTTGTA-TTGTA
* *
82533462 AAATTACCGAAATACCCTCG-ATTGTG
1 AAATTACCGAAATACCCTTGTATTGTA
* * *
82533488 AAAGTACTGAAATACCATTG-ATTTGTA
1 AAATTACCGAAATACCCTTGTA-TTGTA
* * *
82533515 AAATTACCAAAATACCCTCG-ATTCATA
1 AAATTACCGAAATACCCTTGTATT-GTA
* * *
82533542 AAATTATCGAAATACCCTCGTTTTGTA
1 AAATTACCGAAATACCCTTGTATTGTA
* * **
82533569 AAATTACCAAAATACTC-TCAATTTGTA
1 AAATTACCGAAATACCCTTGTA-TTGTA
** * **
82533596 AAATTACTAAAACACCCCCG-ATTTGTA
1 AAATTACCGAAATACCCTTGTA-TTGTA
* *
82533623 AAATTATCGAAATACCCTTGTAGTGTA
1 AAATTACCGAAATACCCTTGTATTGTA
* *
82533650 AAATTATCGAAATACCCTTGTAATGTA
1 AAATTACCGAAATACCCTTGTATTGTA
* **
82533677 AAATGACC-AACATACCCTTGTAGGGTA
1 AAATTACCGAA-ATACCCTTGTATTGTA
82533704 AAAT
1 AAAT
82533708 AACTATTTTG
Statistics
Matches: 452, Mismatches: 89, Indels: 49
0.77 0.15 0.08
Matches are distributed among these distances:
25 4 0.01
26 124 0.27
27 313 0.69
28 10 0.02
29 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTTGTATTGTA
Found at i:82542827 original size:13 final size:13
Alignment explanation
Indices: 82542809--82542844 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
82542799 ACATTACAAA
82542809 CATACACAAAAAC
1 CATACACAAAAAC
82542822 CATACACAAAAAC
1 CATACACAAAAAC
82542835 CATACACAAA
1 CATACACAAA
82542845 CTTGTCATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.61, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
CATACACAAAAAC
Found at i:82544666 original size:40 final size:38
Alignment explanation
Indices: 82544548--82544673 Score: 128
Period size: 40 Copynumber: 3.2 Consensus size: 38
82544538 TTCGAATGAT
*
82544548 ATCCGGGCTAAG-TCCCGAAGGCTTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCTTTGTGC-AAGT-ACTAA
* * * *
82544588 ATCCGGACTAAGATCTGACGGCATATGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGC-TTTGTGCAAG-TACTAA
*
82544628 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCTTT-GTGCAAG-TACTAA
82544668 ATCCGG
1 ATCCGG
82544674 GTTGAGTCCC
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.03
40 61 0.86
41 8 0.11
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (38 bp):
ATCCGGACTAAGATCCGAAGGCTTTGTGCAAGTACTAA
Found at i:82550216 original size:23 final size:24
Alignment explanation
Indices: 82550183--82550228 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
82550173 GCATCACATT
*
82550183 TCATATACCAAAATCAAACCATAA
1 TCATATACCAAAACCAAACCATAA
*
82550207 TCATA-ACCAAAACCAAGCCATA
1 TCATATACCAAAACCAAACCATA
82550229 TCACATAGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.52, C:0.28, G:0.02, T:0.17
Consensus pattern (24 bp):
TCATATACCAAAACCAAACCATAA
Found at i:82552343 original size:94 final size:94
Alignment explanation
Indices: 82552180--82552461 Score: 510
Period size: 94 Copynumber: 3.0 Consensus size: 94
82552170 AATGTGACCG
* * *
82552180 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCA
82552245 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
82552274 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCT
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCA
82552339 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
82552368 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCA
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCA
* *
82552433 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
82552462 GAATGTCGAT
Statistics
Matches: 182, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 182 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCA
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:82552444 original size:24 final size:24
Alignment explanation
Indices: 82552417--82552556 Score: 85
Period size: 24 Copynumber: 5.9 Consensus size: 24
82552407 GAGTTAACAT
82552417 TGGCACTATGTGTGCAGAATTAAA
1 TGGCACTATGTGTGCAGAATTAAA
* *
82552441 TGGCACTATGTGTGCAGATTTGAA
1 TGGCACTATGTGTGCAGAATTAAA
* * * *
82552465 TGTCGA-TGCATGAGTG-AAAATTACA
1 TGGC-ACT--ATGTGTGCAGAATTAAA
** *
82552490 -GGCACTATGTGTGC-GGTTTAGTA
1 TGGCACTATGTGTGCAGAATTA-AA
* *
82552513 TGGCACTATGTGTGCA-AGCTTAAT
1 TGGCACTATGTGTGCAGA-ATTAAA
*
82552537 TAGCACTATGTGTGC-GAATT
1 TGGCACTATGTGTGCAGAATT
82552557 CGGTTGATAA
Statistics
Matches: 86, Mismatches: 20, Indels: 21
0.68 0.16 0.17
Matches are distributed among these distances:
22 9 0.10
23 4 0.05
24 58 0.67
25 9 0.10
26 6 0.07
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (24 bp):
TGGCACTATGTGTGCAGAATTAAA
Found at i:82553865 original size:43 final size:42
Alignment explanation
Indices: 82553818--82553912 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 42
82553808 TTCCAGACGT
* *
82553818 GGTCTTACATGTAATCAAATATCAATGC-CACTGTCCAAGACAG
1 GGTCTTACACGAAATCAAATA-CAATGCTCA-TGTCCAAGACAG
* * * *
82553861 GGTCTTACACGAAATCAAATACGATGCTGATGTCCCAGACAT
1 GGTCTTACACGAAATCAAATACAATGCTCATGTCCAAGACAG
82553903 GGTCTTACAC
1 GGTCTTACAC
82553913 ATAAATCATA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 25 0.56
43 20 0.44
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACAATGCTCATGTCCAAGACAG
Found at i:82553908 original size:42 final size:43
Alignment explanation
Indices: 82553797--82553912 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
82553787 AAAGCTCGTA
* * * *
82553797 CAATGCCAAC-GTTCCAGACGTGGTCTTACATGTAATCAAATAT
1 CAATGCC-ACTGTCCCAGACATGGTCTTACACGAAATCAAATAT
* *
82553840 CAATGCCACTGTCCAAGACAGGGTCTTACACGAAATCAAATA-
1 CAATGCCACTGTCCCAGACATGGTCTTACACGAAATCAAATAT
* *
82553882 CGATGCTGA-TGTCCCAGACATGGTCTTACAC
1 CAATGC-CACTGTCCCAGACATGGTCTTACAC
82553913 ATAAATCATA
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 27 0.44
43 34 0.56
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (43 bp):
CAATGCCACTGTCCCAGACATGGTCTTACACGAAATCAAATAT
Found at i:82555943 original size:34 final size:34
Alignment explanation
Indices: 82555905--82555974 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
82555895 CTCAATGAGT
*
82555905 TAGAAGAATTTTGAATGTTCTCATACGAAAATGC
1 TAGAAGAATTTCGAATGTTCTCATACGAAAATGC
82555939 TAGAAGAATTTCGAATGTTCTCATACGAAAATGC
1 TAGAAGAATTTCGAATGTTCTCATACGAAAATGC
82555973 TA
1 TA
82555975 AATTACTCAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (34 bp):
TAGAAGAATTTCGAATGTTCTCATACGAAAATGC
Found at i:82565194 original size:30 final size:30
Alignment explanation
Indices: 82565139--82565298 Score: 204
Period size: 29 Copynumber: 5.5 Consensus size: 30
82565129 ATAGTGAATC
82565139 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
82565168 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
82565198 CGTACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
82565227 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
82565255 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
82565285 CGCACACTTAGTGC
1 CGCACACTTAGTGC
82565299 CAATCTTGTC
Statistics
Matches: 118, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 46 0.39
30 46 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:82573247 original size:30 final size:30
Alignment explanation
Indices: 82573192--82573351 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
82573182 ATAGTGAATC
82573192 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
82573221 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
82573251 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
82573280 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
82573308 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
82573338 CGCACACTTAGTGC
1 CGCACACTTAGTGC
82573352 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 47 0.39
30 47 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:82573284 original size:59 final size:57
Alignment explanation
Indices: 82573192--82573351 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
82573182 ATAGTGAATC
*
82573192 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
*
82573251 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTGTATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
82573308 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
82573352 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 49 0.53
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:82576768 original size:24 final size:24
Alignment explanation
Indices: 82576735--82576835 Score: 166
Period size: 24 Copynumber: 4.2 Consensus size: 24
82576725 AAGGCTGTCA
* *
82576735 GGAGAAGATTTAGGAACTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
82576759 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
82576783 GGAGAGGATGTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
82576807 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
82576831 GGAGA
1 GGAGA
82576836 ACGGTGTTGG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 72 1.00
ACGTcount: A:0.35, C:0.04, G:0.42, T:0.20
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:82577846 original size:16 final size:15
Alignment explanation
Indices: 82577820--82577849 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
82577810 ACTAGATCGG
82577820 CGAAAGCCGAAAAGC
1 CGAAAGCCGAAAAGC
82577835 CGAAATGCCGAAAAG
1 CGAAA-GCCGAAAAG
82577850 TTGGTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.47, C:0.23, G:0.27, T:0.03
Consensus pattern (15 bp):
CGAAAGCCGAAAAGC
Found at i:82578307 original size:27 final size:26
Alignment explanation
Indices: 82578267--82578377 Score: 89
Period size: 27 Copynumber: 4.2 Consensus size: 26
82578257 AGGAAGCGTC
82578267 CTGGTGGCTA-TGCCACAATGATCTGAT
1 CTGGTGGC-ACTGCCACAAT-ATCTGAT
*
82578294 CTGGTGGCACTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACA-ATATCTGAT
* * * * *
82578321 CTGGTGGCTCTACCACAATTTTTTGTT
1 CTGGTGGCACTGCCACAA-TATCTGAT
* * * *
82578348 CTGGTGACACTGTCACATTATCTGTT
1 CTGGTGGCACTGCCACAATATCTGAT
82578374 CTGG
1 CTGG
82578378 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
26 12 0.17
27 55 0.80
28 2 0.03
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCACTGCCACAATATCTGAT
Found at i:82581577 original size:40 final size:40
Alignment explanation
Indices: 82581511--82581665 Score: 215
Period size: 40 Copynumber: 3.9 Consensus size: 40
82581501 GGACAAGATT
* * * *
82581511 CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCC
1 CGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACC
* *
82581551 CGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACC
1 CGAAGGCATTTGTGCGAGTTG-TTATATCCGGGCTAAGACC
* *
82581591 CGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACT
1 CGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACC
82581631 CGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAA
1 CGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAA
82581666 ATCCCAAAGA
Statistics
Matches: 102, Mismatches: 11, Indels: 5
0.86 0.09 0.04
Matches are distributed among these distances:
39 8 0.08
40 92 0.90
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACC
Found at i:82581941 original size:22 final size:22
Alignment explanation
Indices: 82581901--82581942 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
82581891 GAATGTGCAT
*
82581901 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
82581923 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
82581943 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:82587141 original size:24 final size:24
Alignment explanation
Indices: 82587108--82587208 Score: 150
Period size: 24 Copynumber: 4.2 Consensus size: 24
82587098 AAGACTGTCA
*
82587108 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
82587132 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
82587156 GGAGAGGATGTAGGAGCTGATACA-
1 GGAGAGGATTTAGGAGCTGATA-AG
* *
82587180 AGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
82587204 GGAGA
1 GGAGA
82587209 ACGGTGTTGG
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
23 1 0.01
24 67 0.97
25 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.41, T:0.20
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:82588103 original size:17 final size:18
Alignment explanation
Indices: 82588081--82588122 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
82588071 AGTTCATCTC
*
82588081 GGTAGTTAGATTAATGT-
1 GGTAGTTAGATAAATGTA
* *
82588098 GGTAGTAATATAAATGTA
1 GGTAGTTAGATAAATGTA
82588116 GGTAGTT
1 GGTAGTT
82588123 CGTACGTGGA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.33, C:0.00, G:0.29, T:0.38
Consensus pattern (18 bp):
GGTAGTTAGATAAATGTA
Found at i:82588221 original size:16 final size:15
Alignment explanation
Indices: 82588195--82588224 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
82588185 ACTAGATCGG
82588195 CGAAAGCCGAAAAGC
1 CGAAAGCCGAAAAGC
82588210 CGAAATGCCGAAAAG
1 CGAAA-GCCGAAAAG
82588225 TCGGTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.47, C:0.23, G:0.27, T:0.03
Consensus pattern (15 bp):
CGAAAGCCGAAAAGC
Found at i:82588726 original size:54 final size:53
Alignment explanation
Indices: 82588643--82588752 Score: 166
Period size: 54 Copynumber: 2.1 Consensus size: 53
82588633 GGAAACGTCG
* *
82588643 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCTGTTC
1 TGGTGGCTATACCACAATTATCTGATCTGGTGACACTGCCACAT-TATCTGTTC
* * *
82588697 TGGTGGCTCTACCACAATTATCTGTTCTGGTGACACTGTCACATTATCTGTTC
1 TGGTGGCTATACCACAATTATCTGATCTGGTGACACTGCCACATTATCTGTTC
82588750 TGG
1 TGG
82588753 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 12 0.24
54 39 0.76
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (53 bp):
TGGTGGCTATACCACAATTATCTGATCTGGTGACACTGCCACATTATCTGTTC
Found at i:82588749 original size:26 final size:26
Alignment explanation
Indices: 82588643--82588752 Score: 132
Period size: 27 Copynumber: 4.1 Consensus size: 26
82588633 GGAAACGTCG
*
82588643 TGGTGGCTA-TGCCACAATTATCTGATC
1 TGGTGGC-ACTGCCAC-ATTATCTGTTC
82588670 TGGTGGCACTGCCACATATATCTGTTC
1 TGGTGGCACTGCCACAT-TATCTGTTC
* *
82588697 TGGTGGCTCTACCACAATTATCTGTTC
1 TGGTGGCACTGCCAC-ATTATCTGTTC
* *
82588724 TGGTGACACTGTCACATTATCTGTTC
1 TGGTGGCACTGCCACATTATCTGTTC
82588750 TGG
1 TGG
82588753 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.23
27 54 0.74
28 2 0.03
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (26 bp):
TGGTGGCACTGCCACATTATCTGTTC
Found at i:82590379 original size:42 final size:43
Alignment explanation
Indices: 82590331--82590423 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 43
82590321 GATTTACGTA
** *
82590331 TAAGACCATGTCTGGCACATTGACATCG-TATCTGA-TTGCATG
1 TAAGACCATGTCTGGCACAGAGACATCGATAT-TGAGTTACATG
* * *
82590373 TAAGACCTTGTCTGGGACAGAGGCATCGATATTGAGTTACATG
1 TAAGACCATGTCTGGCACAGAGACATCGATATTGAGTTACATG
82590416 TAAGACCA
1 TAAGACCA
82590424 CATCCGGGAT
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
42 26 0.62
43 16 0.38
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (43 bp):
TAAGACCATGTCTGGCACAGAGACATCGATATTGAGTTACATG
Found at i:82596933 original size:21 final size:23
Alignment explanation
Indices: 82596888--82596936 Score: 66
Period size: 21 Copynumber: 2.2 Consensus size: 23
82596878 ATAATGTATG
*
82596888 ATTTGGTTGTAAAATGGTTGAGA
1 ATTTGGTTATAAAATGGTTGAGA
*
82596911 ATTTGG-TATAAAAT-GTTGTGA
1 ATTTGGTTATAAAATGGTTGAGA
82596932 ATTTG
1 ATTTG
82596937 ATGCTTGTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 11 0.46
22 7 0.29
23 6 0.25
ACGTcount: A:0.31, C:0.00, G:0.27, T:0.43
Consensus pattern (23 bp):
ATTTGGTTATAAAATGGTTGAGA
Found at i:82602992 original size:48 final size:47
Alignment explanation
Indices: 82602931--82603146 Score: 186
Period size: 47 Copynumber: 4.8 Consensus size: 47
82602921 AATCTCGGTT
* *
82602931 ATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACG-GTACACATATTG
* *
82602979 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTACACATATTG
*
82603026 AT-CTAT-TAACGTGGTGCTAAGTGGATATACCATGGT-----TA---
1 ATAC-ATGTAACGTGGTGCTAAGTGGATATACCACGGTACACATATTG
* * * *
82603064 A-ACATGTAACGTGGTGCTAAGTGCATATGCCACGATTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACG-GTACACATATTG
** * ** *
82603111 ATTTAT-TAATGTGGTGCTAAGCAGATATGCCACGGT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGT
82603147 TATATATGTT
Statistics
Matches: 138, Mismatches: 17, Indels: 28
0.75 0.09 0.15
Matches are distributed among these distances:
37 2 0.01
38 27 0.20
39 1 0.01
41 2 0.01
44 2 0.01
46 30 0.22
47 39 0.28
48 35 0.25
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (47 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTACACATATTG
Found at i:82603138 original size:85 final size:84
Alignment explanation
Indices: 82602981--82603148 Score: 255
Period size: 85 Copynumber: 2.0 Consensus size: 84
82602971 ACATATTGAT
*
82602981 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTACATATATTGATCTATTAACGTGGTGCTAA
1 ACATGTAACGTGGTGCTAAGTGCATATGCCACGGTACATATATTGATCTATTAACGTGGTGCTAA
** *
82603046 GTGGATATACCATGGTTAA
66 GCAGATATACCACGGTTAA
* * *
82603065 ACATGTAACGTGGTGCTAAGTGCATATGCCACGATTACATATATTGATTTATTAATGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGCATATGCCACG-GTACATATATTGATCTATTAACGTGGTGCTA
*
82603130 AGCAGATATGCCACGGTTA
65 AGCAGATATACCACGGTTA
82603149 TATATGTTAA
Statistics
Matches: 75, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
84 32 0.43
85 43 0.57
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.32
Consensus pattern (84 bp):
ACATGTAACGTGGTGCTAAGTGCATATGCCACGGTACATATATTGATCTATTAACGTGGTGCTAA
GCAGATATACCACGGTTAA
Found at i:82609864 original size:19 final size:19
Alignment explanation
Indices: 82609840--82609886 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 19
82609830 ATAAAATAAC
82609840 ATGTTTTGGCTAACTATTA
1 ATGTTTTGGCTAACTATTA
82609859 ATGTTTTGGCTAACTATTA
1 ATGTTTTGGCTAACTATTA
82609878 ATGTATTTG
1 ATGT-TTTG
82609887 AATGGTGCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 23 0.85
20 4 0.15
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.49
Consensus pattern (19 bp):
ATGTTTTGGCTAACTATTA
Found at i:82612760 original size:17 final size:18
Alignment explanation
Indices: 82612728--82612763 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
82612718 TTGGGCCACG
82612728 ATGGGCCAAGTGGGCCCA
1 ATGGGCCAAGTGGGCCCA
*
82612746 ATGGGCCCA-TGGGCCCA
1 ATGGGCCAAGTGGGCCCA
82612763 A
1 A
82612764 GTGGATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.22, C:0.31, G:0.36, T:0.11
Consensus pattern (18 bp):
ATGGGCCAAGTGGGCCCA
Found at i:82612864 original size:27 final size:27
Alignment explanation
Indices: 82612822--82612896 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
82612812 AATCTTATAT
* * * *
82612822 CTGTAGGCTAGTATTACTGGATTGCCC
1 CTGTAGGGTAGAATTACTGAAATGCCC
82612849 CTGTAGGGTAGAATTACTGAAATGCCC
1 CTGTAGGGTAGAATTACTGAAATGCCC
*
82612876 TTGTAGGGTAGAATTACTGAA
1 CTGTAGGGTAGAATTACTGAA
82612897 TACCCTTGGT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATGCCC
Found at i:82612970 original size:54 final size:54
Alignment explanation
Indices: 82612895--82613119 Score: 186
Period size: 54 Copynumber: 4.2 Consensus size: 54
82612885 AGAATTACTG
* ** * *
82612895 AATACCCTTGGTTTACAAAATTACCAAAATA-CCTCTAGTTTGTAAAATTACCAA
1 AATACCCTTAGTTTGTAAAATTACCAAAATACCCTC-AATTTATAAAATTACCAA
* * * ** **
82612949 AATACCCTTAGTTTGTGAAATTACCGAAACACCCTCAACCTATAAAATTACTGA
1 AATACCCTTAGTTTGTAAAATTACCAAAATACCCTCAATTTATAAAATTACCAA
** * ***
82613003 AATA-CCTCCGACTTGTAAAATTATTGAAATACCCTCAATTTATAAAATTACCAA
1 AATACCCTTAG-TTTGTAAAATTACCAAAATACCCTCAATTTATAAAATTACCAA
* * * * **
82613057 AATACCCTTAATTTGAAAAATTACTAAAATACCCTTAATTTGGAAAATTA-CAGA
1 AATACCCTTAGTTTGTAAAATTACCAAAATACCCTCAATTTATAAAATTACCA-A
82613111 AATACCCTT
1 AATACCCTT
82613120 GACTTTCTAA
Statistics
Matches: 134, Mismatches: 33, Indels: 8
0.77 0.19 0.05
Matches are distributed among these distances:
53 6 0.04
54 121 0.90
55 7 0.05
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (54 bp):
AATACCCTTAGTTTGTAAAATTACCAAAATACCCTCAATTTATAAAATTACCAA
Found at i:82613006 original size:81 final size:80
Alignment explanation
Indices: 82612911--82613119 Score: 190
Period size: 81 Copynumber: 2.6 Consensus size: 80
82612901 CTTGGTTTAC
* * * * *
82612911 AAAATTACCAAAATACCTCTAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTGAAATTACCGA
1 AAAATTACTAAAATACCTCTAGTTTGTAAAATTA-CAAAATACCCTTAATTTATAAAATTACCAA
82612976 AACACCCTCAACCT-A
65 AACACCCTCAACCTGA
* * * ** *
82612991 TAAAATTACTGAAATACCTC-CGACTTGTAAAATTATTGAAATACCCTCAATTTATAAAATTACC
1 -AAAATTACTAAAATACCTCTAG-TTTGTAAAATTA-CAAAATACCCTTAATTTATAAAATTACC
* * **
82613055 AAAATACCCTTAATTTGA
63 AAAACACCCTCAACCTGA
* *
82613073 AAAATTACTAAAATACC-CTTAATTTGGAAAATTACAGAAATACCCTT
1 AAAATTACTAAAATACCTC-TAGTTTGTAAAATTACA-AAATACCCTT
82613120 GACTTTCTAA
Statistics
Matches: 99, Mismatches: 24, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
80 2 0.02
81 96 0.97
82 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (80 bp):
AAAATTACTAAAATACCTCTAGTTTGTAAAATTACAAAATACCCTTAATTTATAAAATTACCAAA
ACACCCTCAACCTGA
Found at i:82613160 original size:56 final size:55
Alignment explanation
Indices: 82613019--82613176 Score: 142
Period size: 56 Copynumber: 2.9 Consensus size: 55
82613009 TCCGACTTGT
* * * * **
82613019 AAAATTATTGAAATACCCTCAATTTATAAAATTACCA-AAATACCCTT-AATTTGA
1 AAAATTACTAAAATACCATTAATTTGCAAAATTA-CAGAAATACCCTTGAATTTGA
* * * *
82613073 AAAATTACTAAAATACCCTTAATTTGGAAAATTACAGAAATACCCTTGACTTTCTA
1 AAAATTACTAAAATACCATTAATTTGCAAAATTACAGAAATACCCTTGAATTT-GA
** * *
82613129 AAAATTA-TAGAAATACCATTGGTTTGCAAAATTACTGAAATGCCCTTG
1 AAAATTACTA-AAATACCATTAATTTGCAAAATTACAGAAATACCCTTG
82613177 GTTTGTATAT
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
53 2 0.02
54 39 0.45
55 6 0.07
56 40 0.46
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.32
Consensus pattern (55 bp):
AAAATTACTAAAATACCATTAATTTGCAAAATTACAGAAATACCCTTGAATTTGA
Found at i:82613168 original size:27 final size:27
Alignment explanation
Indices: 82612887--82613181 Score: 123
Period size: 27 Copynumber: 10.9 Consensus size: 27
82612877 TGTAGGGTAG
*
82612887 AATTACTG-AATACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGGTTTGCAA
** * *
82612913 AATTACCAAAATA-CCTCTAGTTTGTAA
1 AATTACTGAAATACCCT-TGGTTTGCAA
** * **
82612940 AATTACCAAAATACCCTTAGTTTGTGA
1 AATTACTGAAATACCCTTGGTTTGCAA
* * ***** **
82612967 AATTACCGAAACACCCTCAACCTATAA
1 AATTACTGAAATACCCTTGGTTTGCAA
* ** *
82612994 AATTACTGAAATA-CCTCCGACTTGTAA
1 AATTACTGAAATACCCT-TGGTTTGCAA
* *** **
82613021 AATTATTGAAATACCCTCAATTTATAA
1 AATTACTGAAATACCCTTGGTTTGCAA
** ** *
82613048 AATTACCAAAATACCCTTAATTTGAAA
1 AATTACTGAAATACCCTTGGTTTGCAA
* ** *
82613075 AATTACTAAAATACCCTTAATTTGGAA
1 AATTACTGAAATACCCTTGGTTTGCAA
* *
82613102 AATTACAGAAATACCCTTGACTTT-CTAAA
1 AATTACTGAAATACCCTTG-GTTTGC--AA
*
82613131 AATTA-TAGAAATACCATTGGTTTGCAA
1 AATTACT-GAAATACCCTTGGTTTGCAA
*
82613158 AATTACTGAAATGCCCTTGGTTTG
1 AATTACTGAAATACCCTTGGTTTG
82613182 TATATTTACC
Statistics
Matches: 217, Mismatches: 41, Indels: 21
0.78 0.15 0.08
Matches are distributed among these distances:
26 12 0.06
27 173 0.80
28 13 0.06
29 19 0.09
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGGTTTGCAA
Found at i:82613290 original size:27 final size:27
Alignment explanation
Indices: 82613220--82613297 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
82613210 ACATGACTAA
* *
82613220 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAATGACCGT
* *
82613247 AATACCCCTGTGGGGTAAAGTGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
*
82613274 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTAGGGTAAAATGAC
82613298 GATTATGCCC
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 1 0.02
27 42 0.98
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCGT
Found at i:82613837 original size:18 final size:17
Alignment explanation
Indices: 82613788--82613839 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
82613778 CTAGTCTAGG
82613788 AAAACACGAGTTTTCAA
1 AAAACACGAGTTTTCAA
*
82613805 AATAGCACGA-TTTTCTAA
1 AA-AACACGAGTTTTC-AA
*
82613823 AAAACACGAGCTTTCAA
1 AAAACACGAGTTTTCAA
82613840 CAACAAAGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 15 0.52
18 14 0.48
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (17 bp):
AAAACACGAGTTTTCAA
Found at i:82625018 original size:45 final size:46
Alignment explanation
Indices: 82624954--82625128 Score: 225
Period size: 45 Copynumber: 3.8 Consensus size: 46
82624944 TGTAACCCGC
*
82624954 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
82624999 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* * *
82625049 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
82625092 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82625129 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 8, Indels: 19
0.81 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 37 0.33
46 29 0.26
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:82625120 original size:93 final size:92
Alignment explanation
Indices: 82624962--82625132 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 92
82624952 GCCCATAAGT
*
82624962 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCGCTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
82625027 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
*
82625054 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82625119 CGAGTTCGGATGCC
65 CGAGTTCGGATGCC
82625133 CAAATATCCC
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 27 0.36
93 49 0.64
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCGCTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82625147 original size:46 final size:45
Alignment explanation
Indices: 82624959--82625147 Score: 152
Period size: 46 Copynumber: 4.1 Consensus size: 45
82624949 CCCGCCCATA
* * ** * *
82624959 AGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
* *
82625004 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
82625052 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
82625097 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
82625143 AGTGA
1 AGTGA
82625148 CATGTCACTT
Statistics
Matches: 113, Mismatches: 21, Indels: 19
0.74 0.14 0.12
Matches are distributed among these distances:
43 4 0.04
45 31 0.27
46 38 0.34
47 31 0.27
48 5 0.04
50 4 0.04
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:82627557 original size:30 final size:30
Alignment explanation
Indices: 82627513--82627601 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
82627503 CAAAGATAAC
82627513 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
82627542 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
82627572 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
82627602 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:82627561 original size:15 final size:15
Alignment explanation
Indices: 82627513--82627592 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
82627503 CAAAGATAAC
*
82627513 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
82627527 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
82627542 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
82627557 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
82627572 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
82627587 AAGAAA
1 AAGAAA
82627593 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:82627601 original size:15 final size:15
Alignment explanation
Indices: 82627524--82627601 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
82627514 AGAAAACCGA
82627524 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
82627539 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
82627553 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
82627568 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
82627584 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
82627599 ATA
1 ATA
82627602 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:82630665 original size:93 final size:93
Alignment explanation
Indices: 82630553--82630724 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
82630543 GCCCATAAGT
* *
82630553 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82630618 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
82630646 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82630711 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
82630725 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82630720 original size:46 final size:46
Alignment explanation
Indices: 82630545--82630720 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
82630535 TGTAACCCGC
* * *
82630545 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
82630591 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
82630641 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
82630684 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82630721 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:82639897 original size:31 final size:31
Alignment explanation
Indices: 82639859--82639922 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
82639849 ATTACCGGAC
82639859 TTGAAACTCATATCAGAACAGTAAAAAAATT
1 TTGAAACTCATATCAGAACAGTAAAAAAATT
82639890 TTGAAACTCATATCAGAACAGTAAAAAAATT
1 TTGAAACTCATATCAGAACAGTAAAAAAATT
82639921 TT
1 TT
82639923 CATTTTCTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.50, C:0.12, G:0.09, T:0.28
Consensus pattern (31 bp):
TTGAAACTCATATCAGAACAGTAAAAAAATT
Found at i:82640711 original size:37 final size:37
Alignment explanation
Indices: 82640658--82640758 Score: 184
Period size: 37 Copynumber: 2.7 Consensus size: 37
82640648 CGAATAGTCC
*
82640658 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
82640695 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
82640732 CCACACGTAGTCATCGGGTCTTACCCG
1 CCACACGTAGTCATCGGGTCTTACCCG
82640759 AAATATATTT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:82640959 original size:48 final size:48
Alignment explanation
Indices: 82640901--82641572 Score: 1060
Period size: 48 Copynumber: 14.0 Consensus size: 48
82640891 ATATACACAC
* * *
82640901 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
82640949 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
82640997 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
82641045 ATCTCATACATATTTCACTCTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
82641093 ATCTCATACATATATCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
82641141 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
82641189 ATCTCATACATATATCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
82641237 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
82641285 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
82641333 ATCTCATACATATATCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
82641381 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
82641429 ATCTCATACATATATCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
82641477 ATCTCATACATATTTCATACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
82641525 ATCTCATACATATTT--CATTAGCCATTCGACTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
82641571 AT
1 AT
82641573 ATTTATCTTG
Statistics
Matches: 581, Mismatches: 43, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
46 30 0.05
48 551 0.95
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:82645597 original size:40 final size:40
Alignment explanation
Indices: 82645551--82645796 Score: 368
Period size: 40 Copynumber: 6.2 Consensus size: 40
82645541 CCGAATACAC
* * * *
82645551 ATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * * *
82645591 AACACCAGCACGAATGCTCTTCGGGACTTAACCCTGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * *
82645631 AACTA-TAGCACGAATGCTCTTCGAGACTTAGCCCGGGTAT
1 ATC-ACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
82645671 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
82645711 ATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
82645751 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
82645791 ATCACT
1 ATCACT
82645797 CTCAATTCTC
Statistics
Matches: 188, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 186 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
Found at i:82647125 original size:37 final size:37
Alignment explanation
Indices: 82647072--82647173 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
82647062 TCGAATAGTC
*
82647072 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
82647109 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
82647146 CCACACGTAGTCATC-GGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
82647174 ATATATTTCC
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
36 13 0.21
37 50 0.79
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:82647419 original size:48 final size:48
Alignment explanation
Indices: 82647318--82648080 Score: 1231
Period size: 48 Copynumber: 15.9 Consensus size: 48
82647308 ACACATCGCC
* *
82647318 TACATATTCCACATTAGCCATTCGGCTTTACCA-ATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
82647365 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
82647413 TACATATTTCACTCTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
82647461 TACATATATCACACTAGCCATTCGGCTTTACCACACATATATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
82647509 TACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
82647557 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
82647605 TACATATATCACACTAGCCATTCGGCTTTACCACACATATATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
82647653 TACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
82647701 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
82647749 TACATATATCACACTAGCCATTCGGCTTTACCACACATATATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
82647797 TACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
82647845 GACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* * * *
82647893 TACATATATCACACTAGCCATTGGGCTTTACCACACATATATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
82647941 TACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
82647989 TACATATTTCACACTAGCCATTCGGCTTTACCACACATATATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* * * * *
82648037 TACATATTTCATATTAGCCATTCGACTTTACCACACATATATAT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
82648081 ATTTATCTTG
Statistics
Matches: 662, Mismatches: 53, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
47 31 0.05
48 631 0.95
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:82647534 original size:144 final size:144
Alignment explanation
Indices: 82647318--82648080 Score: 1377
Period size: 144 Copynumber: 5.3 Consensus size: 144
82647308 ACACATCGCC
* * * * *
82647318 TACATAT-TCCACATTAGCCATTCGGCTTTACCA-ATATACATATCTCATACATATTTCACACTA
1 TACATATAT-CACACTAGCCATTCGGCTTTACCACACATATATATCTCATACATATTTCATATTA
*
82647381 GCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACTCTAGCCATTCGGCTTTACCA
65 GCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCA
82647446 CATATACATATCTCA
130 CATATACATATCTCA
82647461 TACATATATCACACTAGCCATTCGGCTTTACCACACATATATATCTCATACATATTTCATATTAG
1 TACATATATCACACTAGCCATTCGGCTTTACCACACATATATATCTCATACATATTTCATATTAG
82647526 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
82647591 ATATACATATCTCA
131 ATATACATATCTCA
82647605 TACATATATCACACTAGCCATTCGGCTTTACCACACATATATATCTCATACATATTTCATATTAG
1 TACATATATCACACTAGCCATTCGGCTTTACCACACATATATATCTCATACATATTTCATATTAG
82647670 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
82647735 ATATACATATCTCA
131 ATATACATATCTCA
82647749 TACATATATCACACTAGCCATTCGGCTTTACCACACATATATATCTCATACATATTTCATATTAG
1 TACATATATCACACTAGCCATTCGGCTTTACCACACATATATATCTCATACATATTTCATATTAG
*
82647814 CCATTCGGCTTTACCACATATACATATCTCAGACATATTTCACACTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
82647879 ATATACATATCTCA
131 ATATACATATCTCA
*
82647893 TACATATATCACACTAGCCATTGGGCTTTACCACACATATATATCTCATACATATTTCATATTAG
1 TACATATATCACACTAGCCATTCGGCTTTACCACACATATATATCTCATACATATTTCATATTAG
82647958 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
* *
82648023 ACATATATATCTCA
131 ATATACATATCTCA
* * * *
82648037 TACATATTTCATATTAGCCATTCGACTTTACCACACATATATAT
1 TACATATATCACACTAGCCATTCGGCTTTACCACACATATATAT
82648081 ATTTATCTTG
Statistics
Matches: 602, Mismatches: 16, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
143 30 0.05
144 572 0.95
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (144 bp):
TACATATATCACACTAGCCATTCGGCTTTACCACACATATATATCTCATACATATTTCATATTAG
CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
ATATACATATCTCA
Found at i:82654299 original size:22 final size:21
Alignment explanation
Indices: 82654273--82654321 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
82654263 TTTGTACTTA
82654273 AATTATTAATATAATGAATTTT
1 AATTATT-ATATAATGAATTTT
* *
82654295 AATTAATTTTATAATTAATTTT
1 AATT-ATTATATAATGAATTTT
*
82654317 GATTA
1 AATTA
82654322 ATTTTGGTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 1 0.04
22 19 0.83
23 3 0.13
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (21 bp):
AATTATTATATAATGAATTTT
Found at i:82654302 original size:10 final size:10
Alignment explanation
Indices: 82654284--82654326 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
82654274 ATTATTAATA
*
82654284 TAATGAATTT
1 TAATTAATTT
82654294 TAATTAATTTT
1 TAATTAA-TTT
82654305 ATAATTAATTT
1 -TAATTAATTT
*
82654316 TGATTAATTT
1 TAATTAATTT
82654326 T
1 T
82654327 GGTTATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 16 0.55
11 6 0.21
12 7 0.24
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (10 bp):
TAATTAATTT
Found at i:82654322 original size:22 final size:22
Alignment explanation
Indices: 82654282--82654326 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
82654272 AAATTATTAA
82654282 TATAATGAATTTTAATTAATTT
1 TATAATGAATTTTAATTAATTT
* *
82654304 TATAATTAATTTTGATTAATTT
1 TATAATGAATTTTAATTAATTT
82654326 T
1 T
82654327 GGTTATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (22 bp):
TATAATGAATTTTAATTAATTT
Found at i:82656721 original size:41 final size:40
Alignment explanation
Indices: 82656554--82656732 Score: 223
Period size: 40 Copynumber: 4.5 Consensus size: 40
82656544 ACTCGATTGT
* * * * * *
82656554 CTTCGGGACATAGCCCGGTTATAGTAATTCGCACAATTGC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
82656594 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
82656634 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
* * * * * * *
82656674 CTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGTTTTGGTAAC-TCGCACAAATGC
*
82656715 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAACCCGG
82656733 ATATCATTCG
Statistics
Matches: 122, Mismatches: 16, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
40 97 0.80
41 25 0.20
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
Found at i:82663445 original size:40 final size:40
Alignment explanation
Indices: 82663333--82663548 Score: 276
Period size: 39 Copynumber: 5.5 Consensus size: 40
82663323 ACTCGATTGT
* * * * * *
82663333 CTTCGGGACAT-AGCCGGTTATAGTAATTCGCACAATTGC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
82663372 CTTCGGGACTTAACCCGG-TTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
82663411 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
82663451 CTTCGGGACTTAACCCGGTTTTGGTAACT-GCACAAATGC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
* * * * * * *
82663490 CTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGTTTTGGTAAC-TCGCACAAATGC
*
82663531 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAACCCGG
82663549 ATACCATTCG
Statistics
Matches: 158, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
39 78 0.49
40 56 0.35
41 24 0.15
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
Found at i:82663455 original size:79 final size:78
Alignment explanation
Indices: 82663333--82663548 Score: 281
Period size: 79 Copynumber: 2.7 Consensus size: 78
82663323 ACTCGATTGT
* * * * *
82663333 CTTCGGGACATAGCCGGTTATAGTAATTCGCACAATTGCCTTCGGGACTTAACCCGG-TTTGGTA
1 CTTCGGGACTTACCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTA
82663397 ACTCGCACAAATGC
66 ACT-GCACAAATGC
*
82663411 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGT
1 CTTCGGGACTT-ACCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGT
82663476 AACTGCACAAATGC
65 AACTGCACAAATGC
* * * * * *
82663490 CTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 CTTCGGGACTT-ACCCGGTTTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGG
82663549 ATACCATTCG
Statistics
Matches: 121, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
78 10 0.08
79 74 0.61
80 37 0.31
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (78 bp):
CTTCGGGACTTACCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTA
ACTGCACAAATGC
Found at i:82665447 original size:27 final size:27
Alignment explanation
Indices: 82665415--82665774 Score: 419
Period size: 27 Copynumber: 13.4 Consensus size: 27
82665405 CGGAGAGGTC
* *
82665415 GTAAAATGACTATAATGCCCTTGTAGA
1 GTAAAATGACTGTAATGCCCCTGTAGA
*
82665442 GTAAAATGA-TCGTAATGCCCCTATAGA
1 GTAAAATGACT-GTAATGCCCCTGTAGA
*
82665469 GTAAAATGACCGTAATGCCCCTGTAGA
1 GTAAAATGACTGTAATGCCCCTGTAGA
*
82665496 GTGAAATGACTGTAATGCCCCTGTAGA
1 GTAAAATGACTGTAATGCCCCTGTAGA
82665523 GTAAAATGA-TCGTAATGCCCCTGTAGA
1 GTAAAATGACT-GTAATGCCCCTGTAGA
* * *
82665550 GTAAAATTATTGTAATGCCCTTGTAGA
1 GTAAAATGACTGTAATGCCCCTGTAGA
**
82665577 GTAAAATGACCT-TAATGCCCCCATAGA
1 GTAAAATGA-CTGTAATGCCCCTGTAGA
* ** *
82665604 GTAAAATGACCGTAATGCCCCCATAAA
1 GTAAAATGACTGTAATGCCCCTGTAGA
* *
82665631 GTAAAATGACCGTAATG-CCCTATAGA
1 GTAAAATGACTGTAATGCCCCTGTAGA
* * *
82665657 GTGAAATGACCGTAATGCCCTTGTAGA
1 GTAAAATGACTGTAATGCCCCTGTAGA
* *
82665684 GTAAAATGACCGTAATTCCCCTGTAGA
1 GTAAAATGACTGTAATGCCCCTGTAGA
82665711 GTAAAATGA-TCGTAATGCCCCTGTAGA
1 GTAAAATGACT-GTAATGCCCCTGTAGA
*
82665738 GTAAAATGA-TCGTAATACCCCTGTATG-
1 GTAAAATGACT-GTAATGCCCCTGTA-GA
82665765 GTAAAATGAC
1 GTAAAATGAC
82665775 GATTATGCCC
Statistics
Matches: 295, Mismatches: 28, Indels: 19
0.86 0.08 0.06
Matches are distributed among these distances:
26 26 0.09
27 266 0.90
28 3 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAAAATGACTGTAATGCCCCTGTAGA
Found at i:82665553 original size:81 final size:81
Alignment explanation
Indices: 82665415--82665774 Score: 467
Period size: 81 Copynumber: 4.5 Consensus size: 81
82665405 CGGAGAGGTC
* * *
82665415 GTAAAATGACTATAATGCCCTTGTAGAGTAAAATGATCGTAATGCCCCTATAGAGTAAAATGACC
1 GTAAAATGACTGTAATGCCCCTGTAGAGTAAAATGACCGTAATGCCCCTATAGAGTAAAATGACC
82665480 GTAATGCCCCTGTAGA
66 GTAATGCCCCTGTAGA
* * * * **
82665496 GTGAAATGACTGTAATGCCCCTGTAGAGTAAAATGATCGTAATGCCCCTGTAGAGTAAAATTATT
1 GTAAAATGACTGTAATGCCCCTGTAGAGTAAAATGACCGTAATGCCCCTATAGAGTAAAATGACC
*
82665561 GTAATGCCCTTGTAGA
66 GTAATGCCCCTGTAGA
** * *
82665577 GTAAAATGACCT-TAATGCCCCCATAGAGTAAAATGACCGTAATGCCCCCATAAAGTAAAATGAC
1 GTAAAATGA-CTGTAATGCCCCTGTAGAGTAAAATGACCGTAATGCCCCTATAGAGTAAAATGAC
*
82665641 CGTAATG-CCCTATAGA
65 CGTAATGCCCCTGTAGA
* * * * * *
82665657 GTGAAATGACCGTAATGCCCTTGTAGAGTAAAATGACCGTAATTCCCCTGTAGAGTAAAATGATC
1 GTAAAATGACTGTAATGCCCCTGTAGAGTAAAATGACCGTAATGCCCCTATAGAGTAAAATGACC
82665722 GTAATGCCCCTGTAGA
66 GTAATGCCCCTGTAGA
*
82665738 GTAAAATGA-TCGTAATACCCCTGTATG-GTAAAATGAC
1 GTAAAATGACT-GTAATGCCCCTGTA-GAGTAAAATGAC
82665775 GATTATGCCC
Statistics
Matches: 239, Mismatches: 35, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.00
80 66 0.28
81 169 0.71
82 3 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (81 bp):
GTAAAATGACTGTAATGCCCCTGTAGAGTAAAATGACCGTAATGCCCCTATAGAGTAAAATGACC
GTAATGCCCCTGTAGA
Found at i:82665784 original size:54 final size:54
Alignment explanation
Indices: 82665415--82665773 Score: 472
Period size: 54 Copynumber: 6.7 Consensus size: 54
82665405 CGGAGAGGTC
** * *
82665415 GTAAAATGACTATAATGCCCTTGTAGAGTAAAATGATCGTAATGCCCCTATAGA
1 GTAAAATGACCGTAATGCCCCTGTAGAGTAAAATGATCGTAATGCCCCTGTAGA
*
82665469 GTAAAATGACCGTAATGCCCCTGTAGAGTGAAATGA-CTGTAATGCCCCTGTAGA
1 GTAAAATGACCGTAATGCCCCTGTAGAGTAAAATGATC-GTAATGCCCCTGTAGA
* * * *
82665523 GTAAAATGATCGTAATGCCCCTGTAGAGTAAAATTATTGTAATGCCCTTGTAGA
1 GTAAAATGACCGTAATGCCCCTGTAGAGTAAAATGATCGTAATGCCCCTGTAGA
* ** * ** *
82665577 GTAAAATGACCTTAATGCCCCCATAGAGTAAAATGACCGTAATGCCCCCATAAA
1 GTAAAATGACCGTAATGCCCCTGTAGAGTAAAATGATCGTAATGCCCCTGTAGA
* * * *
82665631 GTAAAATGACCGTAATG-CCCTATAGAGTGAAATGACCGTAATGCCCTTGTAGA
1 GTAAAATGACCGTAATGCCCCTGTAGAGTAAAATGATCGTAATGCCCCTGTAGA
*
82665684 GTAAAATGACCGTAATTCCCCTGTAGAGTAAAATGATCGTAATGCCCCTGTAGA
1 GTAAAATGACCGTAATGCCCCTGTAGAGTAAAATGATCGTAATGCCCCTGTAGA
* *
82665738 GTAAAATGATCGTAATACCCCTGTATG-GTAAAATGA
1 GTAAAATGACCGTAATGCCCCTGTA-GAGTAAAATGA
82665774 CGATTATGCC
Statistics
Matches: 266, Mismatches: 35, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
53 47 0.18
54 218 0.82
55 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (54 bp):
GTAAAATGACCGTAATGCCCCTGTAGAGTAAAATGATCGTAATGCCCCTGTAGA
Found at i:82665949 original size:27 final size:27
Alignment explanation
Indices: 82665915--82665993 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
82665905 GGAAGTTCTG
* * *
82665915 TACTGGTGACTATGTCACATTTACTGT
1 TACTGGTGGCTATGCCACATTTACTGA
*
82665942 TACTGGTGGCTATGCCACAATTACTGA
1 TACTGGTGGCTATGCCACATTTACTGA
*
82665969 TACAT-GTGGCTTTGCCACATTTACT
1 TAC-TGGTGGCTATGCCACATTTACT
82665994 ATTTCTGGCA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 44 0.98
28 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.37
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACATTTACTGA
Found at i:82666232 original size:33 final size:33
Alignment explanation
Indices: 82666180--82666311 Score: 120
Period size: 33 Copynumber: 4.0 Consensus size: 33
82666170 TTAGGCCCAC
* * * * *
82666180 ACTATTACTGTATAGGGCTATGGCCCGGACTGT
1 ACTAATACTGTACAAGGCTAAGGCCCAGACTGT
82666213 ACTAATACTGTACAAGGCTAAGGCCCAGACTGT
1 ACTAATACTGTACAAGGCTAAGGCCCAGACTGT
* * * *
82666246 ACTGATACTGTATAGGGCTAAGGTCCAGACTGT
1 ACTAATACTGTACAAGGCTAAGGCCCAGACTGT
* * ** * * *
82666279 ATTGATACTAAATAGGGCTTAGGCCCAGACTGT
1 ACTAATACTGTACAAGGCTAAGGCCCAGACTGT
82666312 TACCGATCTG
Statistics
Matches: 85, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 85 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (33 bp):
ACTAATACTGTACAAGGCTAAGGCCCAGACTGT
Found at i:82666277 original size:66 final size:66
Alignment explanation
Indices: 82666185--82666311 Score: 164
Period size: 66 Copynumber: 1.9 Consensus size: 66
82666175 CCCACACTAT
* * **
82666185 TACTGTATAGGGCTATGGCCCGGACTGTACTAATACTGTACAAGGCTAAGGCCCAGACTGTACTG
1 TACTGTATAGGGCTAAGGCCCAGACTGTACTAATACTAAACAAGGCTAAGGCCCAGACTGTACTG
82666250 A
66 A
* * * * * *
82666251 TACTGTATAGGGCTAAGGTCCAGACTGTATTGATACTAAATAGGGCTTAGGCCCAGACTGT
1 TACTGTATAGGGCTAAGGCCCAGACTGTACTAATACTAAACAAGGCTAAGGCCCAGACTGT
82666312 TACCGATCTG
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
66 51 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (66 bp):
TACTGTATAGGGCTAAGGCCCAGACTGTACTAATACTAAACAAGGCTAAGGCCCAGACTGTACTG
A
Found at i:82666333 original size:28 final size:28
Alignment explanation
Indices: 82666293--82666367 Score: 150
Period size: 28 Copynumber: 2.7 Consensus size: 28
82666283 ATACTAAATA
82666293 GGGCTTAGGCCCAGACTGTTACCGATCT
1 GGGCTTAGGCCCAGACTGTTACCGATCT
82666321 GGGCTTAGGCCCAGACTGTTACCGATCT
1 GGGCTTAGGCCCAGACTGTTACCGATCT
82666349 GGGCTTAGGCCCAGACTGT
1 GGGCTTAGGCCCAGACTGT
82666368 GTTATTCACT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (28 bp):
GGGCTTAGGCCCAGACTGTTACCGATCT
Found at i:82670915 original size:80 final size:80
Alignment explanation
Indices: 82670831--82670979 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
82670821 TATGGTAACC
* * * *
82670831 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
82670895 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
82670911 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
82670976 CCGG
66 CCGG
82670980 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:82670921 original size:40 final size:38
Alignment explanation
Indices: 82670872--82670979 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
82670862 ATCACGATTT
*
82670872 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
82670912 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
82670952 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
82670980 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:82674641 original size:40 final size:40
Alignment explanation
Indices: 82674533--82674742 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
82674523 CGGGATTTAA
* * * * *
82674533 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
82674573 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82674613 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82674653 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82674693 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82674733 CCGGATATAT
1 CCGGATATAT
82674743 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:82682292 original size:80 final size:80
Alignment explanation
Indices: 82682208--82682356 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
82682198 TATGGTAACC
* * * *
82682208 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
82682272 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
82682288 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
82682353 CCGG
66 CCGG
82682357 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:82682298 original size:40 final size:38
Alignment explanation
Indices: 82682249--82682356 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
82682239 ATCACGATTT
*
82682249 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
82682289 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
82682329 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
82682357 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:82693311 original size:19 final size:20
Alignment explanation
Indices: 82693287--82693324 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
82693277 GGTACCACCA
82693287 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
82693306 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
82693325 ACCACCTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:82693664 original size:93 final size:93
Alignment explanation
Indices: 82693554--82693724 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
82693544 GCCCCTAAGT
*
82693554 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTAGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTAGGACTCAACTCAA
82693619 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
82693647 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTAGGACTCAACTCAA
82693712 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82693725 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTAGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82693721 original size:46 final size:46
Alignment explanation
Indices: 82693549--82693721 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
82693539 AACCCGCCCC
* * *
82693549 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
82693595 TAAATGAACTAGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
82693643 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
82693688 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82693722 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:82700608 original size:19 final size:20
Alignment explanation
Indices: 82700584--82700621 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
82700574 GGTACCACCA
82700584 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
82700603 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
82700622 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:82700965 original size:93 final size:93
Alignment explanation
Indices: 82700850--82701020 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
82700840 GCCCTTAAGT
82700850 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCACATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCACATCCATAAATGAACTCGGACTCAACTCA
82700914 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* ** *
82700943 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
82701008 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82701021 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82701015 original size:46 final size:46
Alignment explanation
Indices: 82700845--82701017 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
82700835 AACCCGCCCT
* *
82700845 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CATTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTTACATCCA
* *
82700891 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTACATCCA
* * *
82700939 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
82700984 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82701018 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 58 0.53
47 29 0.27
48 2 0.02
49 2 0.02
50 6 0.06
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
Found at i:82701472 original size:30 final size:30
Alignment explanation
Indices: 82701438--82701497 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
82701428 ATTTAATACG
*
82701438 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTACCCCTA
*** *
82701468 AACTTTTGCATAATTACACTTTTACCCCTA
1 AACTTTAAAAAAATTACACTTTTACCCCTA
82701498 TGCTTGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTACCCCTA
Found at i:82707551 original size:6 final size:6
Alignment explanation
Indices: 82707542--82707623 Score: 60
Period size: 6 Copynumber: 13.3 Consensus size: 6
82707532 TAACAGAACT
* * * *
82707542 AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATT AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC
* *
82707591 AGGTAA-C AGAATC AAAATC AGAATC AGTATC AG
1 A-G-AATC AGAATC AGAATC AGAATC AGAATC AG
82707624 GTAACAGAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
5 3 0.05
6 49 0.83
7 5 0.08
8 2 0.03
ACGTcount: A:0.46, C:0.13, G:0.20, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:82707570 original size:31 final size:31
Alignment explanation
Indices: 82707532--82707633 Score: 143
Period size: 31 Copynumber: 3.3 Consensus size: 31
82707522 TAAGAAACAT
* *
82707532 TAACAGAA-CTAGAATCAGAATCAGAATTAGG
1 TAACAGAATC-AGAATCAGAATCAGTATCAGG
* *
82707563 TGACAGAATCAGAATTAGAATCAGTATCAGG
1 TAACAGAATCAGAATCAGAATCAGTATCAGG
*
82707594 TAACAGAATCAAAATCAGAATCAGTATCAGG
1 TAACAGAATCAGAATCAGAATCAGTATCAGG
82707625 TAACAGAAT
1 TAACAGAAT
82707634 AAAAAATCAG
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
31 62 0.98
32 1 0.02
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.21
Consensus pattern (31 bp):
TAACAGAATCAGAATCAGAATCAGTATCAGG
Found at i:82707813 original size:27 final size:26
Alignment explanation
Indices: 82707783--82707884 Score: 78
Period size: 27 Copynumber: 3.8 Consensus size: 26
82707773 GCTCAGTTAT
*
82707783 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGACAGAGCCACCAGA-A
* **
82707810 CAGATACTGTGGTAGAGCCACCAGAA
1 CAGATATTGTGACAGAGCCACCAGAA
* * **
82707836 CAGATATTTGTGGCATAGCCAAGAGAAA
1 CAGATA-TTGTGACAGAGCCACCAG-AA
* * *
82707864 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGACAGAGCCAC
82707885 TTAATAGAAT
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
26 7 0.11
27 46 0.75
28 8 0.13
ACGTcount: A:0.37, C:0.20, G:0.25, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGACAGAGCCACCAGAA
Found at i:82708400 original size:27 final size:27
Alignment explanation
Indices: 82708369--82708618 Score: 403
Period size: 27 Copynumber: 9.3 Consensus size: 27
82708359 CAAGGTATCC
82708369 CGGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
82708396 CGGTAATTCTACCCTAC-GGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
*
82708422 CGGTAATTCTACCCTACAGGGGTATTG
1 CGGTAATTCTACCCTACAGGGGTATTT
** *
82708449 CAATAATTCTACCCTACAAGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
82708476 CGGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
*
82708503 CGGTAATTCTACCCTACAAGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
82708530 CGGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
* *
82708557 CGGTATTTCTACCCTATAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
* *
82708584 CGGTATTTCTACCCTACAAGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
*
82708611 TGGTAATT
1 CGGTAATT
82708619 TTGTAAATTG
Statistics
Matches: 206, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
26 26 0.13
27 180 0.87
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (27 bp):
CGGTAATTCTACCCTACAGGGGTATTT
Found at i:82708660 original size:27 final size:27
Alignment explanation
Indices: 82708611--82708675 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
82708601 AAGGGTATTT
* *
82708611 TGGTAATTTTGTAAATTGAGGGTAAAA
1 TGGTAATTTTATAAATAGAGGGTAAAA
***
82708638 TGGTAATTTTATAAATCAG-GGGTACTT
1 TGGTAATTTTATAAAT-AGAGGGTAAAA
82708665 TGGTAATTTTA
1 TGGTAATTTTA
82708676 CAAGTCGGGG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.32, C:0.03, G:0.23, T:0.42
Consensus pattern (27 bp):
TGGTAATTTTATAAATAGAGGGTAAAA
Found at i:82709016 original size:108 final size:108
Alignment explanation
Indices: 82708638--82709024 Score: 497
Period size: 108 Copynumber: 3.6 Consensus size: 108
82708628 GAGGGTAAAA
* * * ** * ***
82708638 TGGTAATTTTATAAATCAGGGGTACTTTGGTAATTTTACAAGTCGGGGGTATTTCAATAATTTTA
1 TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
* *** * * * *
82708703 CAGGTCGAGGGTATTTCAGTAATGTCACAAA-TCAGGGGTATTT
66 TAAACCAAGGGTATTTTAGTAATTTTACAAACT-AGGGGTATTT
* * *
82708746 TGATAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
1 TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
* *
82708811 TAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
66 TAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTT
* * * * * * *
82708854 TGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTG
1 TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
82708919 TAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTT
66 TAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTT
82708962 TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
82709025 GGTAAACTAA
Statistics
Matches: 238, Mismatches: 40, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
108 238 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (108 bp):
TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
TAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTT
Found at i:82709031 original size:27 final size:27
Alignment explanation
Indices: 82708638--82709024 Score: 443
Period size: 27 Copynumber: 14.3 Consensus size: 27
82708628 GAGGGTAAAA
* * *
82708638 TGGTAATTTTATAAATCAGGGGTACTT
1 TGGTAATTTTACAAACCAGGGGTATTT
** *
82708665 TGGTAATTTTACAAGTCGGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
*** ***
82708692 CAATAATTTTACAGGTC-GAGGGTATTT
1 TGGTAATTTTACAAACCAG-GGGTATTT
** * * *
82708719 CAGTAATGTCACAAATCAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
* *
82708746 TGATAATTTTACAAACTAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
*
82708773 TGATAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
* * *
82708800 TGGTAATTTTATAAACAAAGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
*
82708827 TAGTAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
* * * *
82708854 TGGTGATTTTATAAACCAAGGGTATTC
1 TGGTAATTTTACAAACCAGGGGTATTT
* *
82708881 TAGTAATTTTACAAACTAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
** *
82708908 TGGTAATTTTGTAAACCAAGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
* *
82708935 TAGTAATTTTACAAACTAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
82708962 TGGTAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
82708989 TGGTAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
82709016 TGGTAATTT
1 TGGTAATTT
82709025 GGTAAACTAA
Statistics
Matches: 306, Mismatches: 52, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 1 0.00
27 304 0.99
28 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
TGGTAATTTTACAAACCAGGGGTATTT
Found at i:82709032 original size:81 final size:81
Alignment explanation
Indices: 82708603--82709033 Score: 425
Period size: 81 Copynumber: 5.3 Consensus size: 81
82708593 TACCCTACAA
* * *** * * *
82708603 GGGTATTTTGGTAATTTTGTAAA-TTGAGGGTAAAATGGTAATTTTATAAATCAGGGGTACTTTG
1 GGGTATTTTGGTAATTTTATAAACTAG-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
** *
82708667 GTAATTTTACAAGTCGG
65 GTAATTTTACAAACCAG
*** * ** * ** * * *
82708684 GGGTATTTCAATAATTTTA-CAGGTCGAGGGTATTTCAGTAATGTCACAAATCAGGGGTATTTTG
1 GGGTATTTTGGTAATTTTATAAACTAG-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
* *
82708748 ATAATTTTACAAACTAG
65 GTAATTTTACAAACCAG
* * * * * * *
82708765 GGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
82708830 TAATTTTACAAACCAG
66 TAATTTTACAAACCAG
* * * * * *
82708846 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
** *
82708911 TAATTTTGTAAACCAA
66 TAATTTTACAAACCAG
* *
82708927 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
82708992 TAATTTTACAAACCAG
66 TAATTTTACAAACCAG
**
82709008 GGGTATTTTGGTAATTTGGTAAACTA
1 GGGTATTTTGGTAATTTTATAAACTA
82709034 AAGTATTCTA
Statistics
Matches: 281, Mismatches: 67, Indels: 4
0.80 0.19 0.01
Matches are distributed among these distances:
80 1 0.00
81 278 0.99
82 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
TAATTTTACAAACCAG
Found at i:82714521 original size:93 final size:93
Alignment explanation
Indices: 82714411--82714581 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
82714401 GCCCCTAAGT
* *
82714411 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
82714476 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
82714504 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
82714569 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82714582 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82714578 original size:46 final size:46
Alignment explanation
Indices: 82714406--82714578 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
82714396 AACCCGCCCC
* * * *
82714406 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
82714452 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
82714500 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
82714545 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82714579 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Done.