Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 268 of 410
Found at i:82722072 original size:93 final size:93
Alignment explanation
Indices: 82721962--82722132 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
82721952 GCCCCTAAGT
* *
82721962 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
82722027 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
82722055 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
82722120 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82722133 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82722129 original size:46 final size:46
Alignment explanation
Indices: 82721957--82722129 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
82721947 AACCCGCCCC
* * * *
82721957 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
82722003 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
82722051 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
82722096 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82722130 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:82726202 original size:40 final size:40
Alignment explanation
Indices: 82726141--82726391 Score: 382
Period size: 40 Copynumber: 6.3 Consensus size: 40
82726131 ATTCGGATTG
*
82726141 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* * *
82726180 ATATCTGGGCTAAGTCCCGAAGGCAATTGTGGGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
*
82726220 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
82726260 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
*
82726300 ATAACCGGGCTAAGTCCCGAAAGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* * *
82726340 ATAACCGGGCTAAGTCCTGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CT
*
82726380 ATATCC-GGCTAA
1 ATAACCGGGCTAA
82726392 ACCCTGAAGG
Statistics
Matches: 195, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 20 0.10
40 175 0.90
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
Found at i:82730074 original size:46 final size:46
Alignment explanation
Indices: 82729929--82730101 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
82729919 GGTTATTGTA
* * * **
82729929 AGCTAGTGTAAGACATGCCTGGGACATGCATCAGCCATA-ATATAAG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTAGACGT-AG
* *
82729975 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AG
1 AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTT-AGACGTAG
* * *
82730023 TGCTAGTGTAACACATGTCTGTGACATGCATCGGCCTTCAGACGTA-
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTT-AGACGTAG
*
82730069 AGCTAGTGTAAGACATGACTGGGACATGCATCG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCG
82730102 ACTACAAGAT
Statistics
Matches: 105, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
46 56 0.53
47 27 0.26
48 20 0.19
49 1 0.01
50 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.23
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTAGACGTAG
Found at i:82730189 original size:140 final size:140
Alignment explanation
Indices: 82729926--82730190 Score: 313
Period size: 140 Copynumber: 1.9 Consensus size: 140
82729916 ATGGGTTATT
* * *
82729926 GTAAGCTAGTGTAAGACATGCCTGGGACATGCATCAGCCATAATATAAGAGCCAGTGTAAGACCA
1 GTAAGCTAGTGTAAGACATGACTGGGACATGCATCAGACATAATAGAAGAGCCAGTGTAAGACCA
* * ** **
82729991 TGTCTGGGACATGGCATCGGCATTGAGACGAGTGCTAGTGTAACACATGTCTGTGACATGCATCG
66 TGTCTAGGACATGGCATAGGCACAGAGACGAGAACTAGTGTAACACATGTCTGTGACATGCATCG
82730056 GCCTTCAGAC
131 GCCTTCAGAC
* * * *
82730066 GTAAGCTAGTGTAAGACATGACTGGGACATGCATC-GAC-TACA-AGATGTGTCAGTGTAAGATC
1 GTAAGCTAGTGTAAGACATGACTGGGACATGCATCAGACATA-ATAGAAGAGCCAGTGTAAGACC
* * * *
82730128 ATGTCTAGGACATGGCATAGGCACAGATATACTAGAACTTGTGTAAGACCATGTCTG-GACATG
65 ATGTCTAGGACATGGCATAGGCACAG--AGACGAGAACTAGTGTAACA-CATGTCTGTGACATG
82730191 GCGTCGATGT
Statistics
Matches: 104, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
138 39 0.38
139 3 0.03
140 54 0.52
141 8 0.08
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (140 bp):
GTAAGCTAGTGTAAGACATGACTGGGACATGCATCAGACATAATAGAAGAGCCAGTGTAAGACCA
TGTCTAGGACATGGCATAGGCACAGAGACGAGAACTAGTGTAACACATGTCTGTGACATGCATCG
GCCTTCAGAC
Found at i:82734042 original size:39 final size:40
Alignment explanation
Indices: 82733999--82734108 Score: 143
Period size: 40 Copynumber: 2.8 Consensus size: 40
82733989 GAAATTTTAT
* * *
82733999 TCCGGGTTAAGA-CCGAAGGCAATTGTGCTAGTAGCTATA
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGCTAAA
* *
82734038 TCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTAAA
1 TCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAGCTAAA
*
82734078 TCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCAA
82734109 ATCGTGATAT
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
39 14 0.23
40 46 0.74
41 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGCTAAA
Found at i:82734121 original size:40 final size:39
Alignment explanation
Indices: 82733954--82734123 Score: 141
Period size: 40 Copynumber: 4.3 Consensus size: 39
82733944 AGAAATTGAA
* * *
82733954 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAATT
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
82733995 TTAT-TCCGGGTTAAGA-CCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
82734033 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
82734073 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
82734113 TGATATCCGGG
1 TGATATCCGGG
82734124 TAAAGTCCCG
Statistics
Matches: 103, Mismatches: 18, Indels: 17
0.75 0.13 0.12
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 4 0.04
39 21 0.20
40 68 0.66
41 4 0.04
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:82738090 original size:92 final size:92
Alignment explanation
Indices: 82737933--82738102 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 92
82737923 CCGCCCATAA
* *
82737933 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
82737998 GAGCTCGGATGCCTAGTTACATCTCTC
66 GAGCTCGGATGCCTAGTTACATCTCTC
*
82738025 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
*
82738089 CGAGTTCGGATGCC
65 CGAGCTCGGATGCC
82738103 CAAACATCCT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 8 0.11
92 65 0.89
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:82738098 original size:45 final size:44
Alignment explanation
Indices: 82737933--82738098 Score: 185
Period size: 45 Copynumber: 3.7 Consensus size: 44
82737923 CCGCCCATAA
* *
82737933 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-GCATCCATAGT
* *
82737978 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-T--C
1 GAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTGCATC-CATAGT
*
82738025 GAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTGCATCCAT-AGT
*
82738070 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
82738099 TGCCCAAACA
Statistics
Matches: 104, Mismatches: 7, Indels: 20
0.79 0.05 0.15
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 1 0.01
44 1 0.01
45 57 0.55
47 28 0.27
48 1 0.01
49 5 0.05
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTGCATCCATAGT
Found at i:82743499 original size:46 final size:45
Alignment explanation
Indices: 82743424--82743598 Score: 154
Period size: 46 Copynumber: 3.8 Consensus size: 45
82743414 TGTAACCCGC
* * * *
82743424 CCATAAGCGAACTTGGACTCAACTCAACGACCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
* * *
82743470 CCATGAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTAGCAT
* *** * * * *
82743516 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTTGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
*
82743563 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
82743599 ATGCCCAAAC
Statistics
Matches: 102, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 66 0.65
47 33 0.32
48 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTAGCAT
Found at i:82743590 original size:93 final size:93
Alignment explanation
Indices: 82743431--82743603 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
82743421 CGCCCATAAG
* * * *
82743431 CGAACTTGGACTCAACTCAACGACCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGACCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
82743496 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
** * *
82743524 CGAACTCGGACTCAACTCAACGAGTTTGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGACCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
82743589 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
82743604 CAAACATCCT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGACCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:82743618 original size:46 final size:46
Alignment explanation
Indices: 82743475--82743618 Score: 143
Period size: 46 Copynumber: 3.1 Consensus size: 46
82743465 CGCATCCATG
*
82743475 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--TACATC-CT
* * * * *
82743524 --CGAACTCGGACTCAACTCAACGAGTTTGGA--CATTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCC-T
* *
82743567 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
82743614 AGTGA
1 AGTGA
82743619 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 15
0.73 0.12 0.14
Matches are distributed among these distances:
42 1 0.01
43 6 0.08
45 2 0.03
46 33 0.43
47 28 0.37
48 6 0.08
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
Found at i:82751202 original size:40 final size:40
Alignment explanation
Indices: 82751157--82751286 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
82751147 CGGAATATAA
82751157 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
82751197 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
82751237 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
82751277 CCGGATATAA
1 CCGGATATAA
82751287 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:82751301 original size:40 final size:39
Alignment explanation
Indices: 82751173--82751323 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
82751163 ATAACCATGT
* * *
82751173 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
82751213 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
82751253 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
82751292 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
82751324 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:82751307 original size:80 final size:79
Alignment explanation
Indices: 82751157--82751323 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
82751147 CGGAATATAA
*
82751157 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
82751222 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
82751237 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
82751299 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
82751316 CCGGATAT
1 CCGGATAT
82751324 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:82759223 original size:40 final size:40
Alignment explanation
Indices: 82759178--82759307 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
82759168 CGGAATATAA
82759178 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
82759218 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
82759258 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
82759298 CCGGATATAA
1 CCGGATATAA
82759308 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:82759322 original size:40 final size:39
Alignment explanation
Indices: 82759194--82759344 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
82759184 ATAACCATGT
* * *
82759194 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
82759234 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
82759274 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
82759313 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
82759345 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:82759328 original size:80 final size:79
Alignment explanation
Indices: 82759178--82759344 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
82759168 CGGAATATAA
*
82759178 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
82759243 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
82759258 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
82759320 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
82759337 CCGGATAT
1 CCGGATAT
82759345 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:82763653 original size:43 final size:43
Alignment explanation
Indices: 82763586--82763754 Score: 182
Period size: 43 Copynumber: 4.0 Consensus size: 43
82763576 AAAGCTCGTA
* * * *
82763586 CAATGCC-ATATCCCAGATATGGTCTTATATGTTATCACATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT
* * * * * *
82763628 CTATGCCACTGTCCCAGACAGGGTCTTACACGAAATCGA-ATAA
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATC-ACATAT
* *
82763671 CGATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCA-AT
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT
*
82763713 ACAATGCCAATGTTCCAGACATGGTCTTACATGTAATCACAT
1 -CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
82763755 CTTGGTAACC
Statistics
Matches: 102, Mismatches: 20, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
42 7 0.07
43 94 0.92
44 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT
Found at i:82764291 original size:28 final size:29
Alignment explanation
Indices: 82764227--82764291 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
82764217 TTTTCATTTA
* *
82764227 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAATTTAACCCCTCAATTGACACT
* *
82764256 TTTCTCAATTTAATCCCT-AATTGACATT
1 TTTCTCAATTTAACCCCTCAATTGACACT
*
82764284 TTTGTCAA
1 TTTCTCAA
82764292 AAATCATTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 15 0.48
29 16 0.52
ACGTcount: A:0.29, C:0.25, G:0.03, T:0.43
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTCAATTGACACT
Found at i:82772326 original size:40 final size:39
Alignment explanation
Indices: 82772281--82772488 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
82772271 CGGAATACAA
*
82772281 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
82772321 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
82772361 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
82772401 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
82772441 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
82772481 CCGGATAT
1 CCGGATAT
82772489 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:82772421 original size:80 final size:80
Alignment explanation
Indices: 82772281--82772487 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
82772271 CGGAATACAA
* * *
82772281 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
82772345 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
82772361 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
82772425 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
82772441 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
82772488 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:82783012 original size:47 final size:47
Alignment explanation
Indices: 82782961--82783065 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
82782951 TAGTATTAAT
*
82782961 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
82783008 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
82783055 AATGTGATAAG
1 TATGTGATAAG
82783066 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:82785057 original size:38 final size:38
Alignment explanation
Indices: 82784955--82785059 Score: 113
Period size: 38 Copynumber: 2.8 Consensus size: 38
82784945 AATCCGAGTT
* * * *
82784955 TAAAGACCCGCTGACTATATGTAGAGATTATGTCCGGG
1 TAAAGACCCACTGGCTATATATAGAGATTATGTCCGGA
* * *
82784993 TAAAGACCCGA-TGGCTATGTACAGAGATTATGTCTGGA
1 TAAAGACCC-ACTGGCTATATATAGAGATTATGTCCGGA
* *
82785031 TTAAGACCCACTGGCTTTATATAGAGATT
1 TAAAGACCCACTGGCTATATATAGAGATT
82785060 TCATCCGAGC
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
37 1 0.02
38 53 0.98
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (38 bp):
TAAAGACCCACTGGCTATATATAGAGATTATGTCCGGA
Found at i:82785161 original size:39 final size:40
Alignment explanation
Indices: 82785087--82785355 Score: 417
Period size: 39 Copynumber: 6.9 Consensus size: 40
82785077 CTCGACGATG
*
82785087 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
82785127 ATCCGGGCTAAATCCCGAA-GGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
**
82785166 ATCCGGGCTAAATCCCGAA-GGCATTCGTGTTGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
82785205 AT-CGGGCTAAATCCCGAAGGGTATTCATGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
82785244 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
82785284 ATCCGGGCTAAAT-CCGAA-GGTATTCGTGCCGATGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
82785322 ATCCGGGCTAAGT-CCGAAGGGCATTCGTG-CGGTG
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTG
82785356 ATGTGTATTC
Statistics
Matches: 212, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
38 55 0.26
39 91 0.43
40 66 0.31
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
Found at i:82789810 original size:47 final size:47
Alignment explanation
Indices: 82789759--82789863 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
82789749 TAGTATTAAT
*
82789759 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
82789806 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
82789853 AATGTGATAAG
1 TATGTGATAAG
82789864 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:82792877 original size:13 final size:13
Alignment explanation
Indices: 82792859--82792884 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82792849 CAACTCAAAA
82792859 ATGTGATAAACAC
1 ATGTGATAAACAC
82792872 ATGTGATAAACAC
1 ATGTGATAAACAC
82792885 TCATAAAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.23
Consensus pattern (13 bp):
ATGTGATAAACAC
Found at i:82808921 original size:38 final size:39
Alignment explanation
Indices: 82808861--82808936 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 39
82808851 GTGTGGTCTG
82808861 CCCGTGTAAGGAGGTCCAGGCCATTTTGATTTCGTACTA
1 CCCGTGTAAGGAGGTCCAGGCCATTTTGATTTCGTACTA
82808900 CCCGTGTAAGG-GGTCCAGGCCATTTTGATTTCGTACT
1 CCCGTGTAAGGAGGTCCAGGCCATTTTGATTTCGTACT
82808937 TTGGCCAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
38 26 0.70
39 11 0.30
ACGTcount: A:0.18, C:0.24, G:0.26, T:0.32
Consensus pattern (39 bp):
CCCGTGTAAGGAGGTCCAGGCCATTTTGATTTCGTACTA
Found at i:82811603 original size:93 final size:93
Alignment explanation
Indices: 82811490--82811660 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
82811480 GCCCATAAGT
* * *
82811490 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGGCTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
82811555 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
82811583 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAG
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
82811648 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82811661 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82811657 original size:46 final size:46
Alignment explanation
Indices: 82811482--82811657 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
82811472 TGTAACCCGC
* * *
82811482 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
82811528 CCATAAGTGAACTCGGGCTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
* * *
82811578 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
82811621 CCATAAGTGAACTCGGACTCAACTCAGCGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82811658 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 28 0.25
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:82812111 original size:30 final size:30
Alignment explanation
Indices: 82812076--82812136 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
82812066 TCCTTAACTC
82812076 AAATTTTGGCAAAATTACAATTTTGCCCCT
1 AAATTTTGGCAAAATTACAATTTTGCCCCT
* * * *
82812106 AAATTTTTGCATATTTACATTTTTGCCCCT
1 AAATTTTGGCAAAATTACAATTTTGCCCCT
82812136 A
1 A
82812137 GGCTCGGGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.43
Consensus pattern (30 bp):
AAATTTTGGCAAAATTACAATTTTGCCCCT
Found at i:82826207 original size:40 final size:41
Alignment explanation
Indices: 82826089--82826207 Score: 116
Period size: 41 Copynumber: 2.8 Consensus size: 41
82826079 TTTAAAGATT
** **
82826089 AGCCGAAGCTATAATAATTTACGCACACTTAGTGCCATCTCATTT
1 AGCCGAAGCTAT-ACCATTT-CGCACACTTAGTG-CA-CTCATAC
* *
82826134 AACCGAAGCTAT-CTCAGTATCGCACACTTAGTGC-CTCATAC
1 AGCCGAAGCTATAC-CA-TTTCGCACACTTAGTGCACTCATAC
82826175 AGCCGAAGCTATACCATTTCGCACACTTAGTGC
1 AGCCGAAGCTATACCATTTCGCACACTTAGTGC
82826208 TAATTATAGT
Statistics
Matches: 63, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
40 16 0.25
41 18 0.29
42 1 0.02
43 1 0.02
44 14 0.22
45 13 0.21
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (41 bp):
AGCCGAAGCTATACCATTTCGCACACTTAGTGCACTCATAC
Found at i:82827753 original size:48 final size:48
Alignment explanation
Indices: 82827612--82827757 Score: 229
Period size: 48 Copynumber: 3.0 Consensus size: 48
82827602 ATATATACAC
* **
82827612 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** *
82827660 GGCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
82827708 ATCTCATACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
82827756 AT
1 AT
82827758 ATATCTTGTA
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 88 1.00
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.38
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:82830123 original size:23 final size:23
Alignment explanation
Indices: 82830091--82830134 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
82830081 AAAATTTCAC
* *
82830091 ACATGTAATTTCACATATAATAG
1 ACATGAAATTTAACATATAATAG
*
82830114 ACATGAAATTTAACATTTAAT
1 ACATGAAATTTAACATATAAT
82830135 TATTTTTGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (23 bp):
ACATGAAATTTAACATATAATAG
Found at i:82831108 original size:40 final size:40
Alignment explanation
Indices: 82831041--82831156 Score: 180
Period size: 40 Copynumber: 2.9 Consensus size: 40
82831031 TTTTGTCCCG
* * *
82831041 GCACGAATGC-CTTTGGGGCTTAGCCCGGATACATCACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACCA
*
82831080 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACCA
*
82831120 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATACAACA
82831157 TACTGAACTT
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 10 0.14
40 62 0.86
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (40 bp):
GCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACCA
Found at i:82833242 original size:48 final size:48
Alignment explanation
Indices: 82833091--82833246 Score: 231
Period size: 48 Copynumber: 3.2 Consensus size: 48
82833081 CGGCCACAAT
* *
82833091 ACATATACACATCCCATACATATTTCACATTAGCCATTTGGCTTTACC
1 ACATATACATATCTCATACATATTTCACATTAGCCATTTGGCTTTACC
* **
82833139 ACATATGCATGGCTCATACATATTTCACATTAGCCATTTGGCTTTACC
1 ACATATACATATCTCATACATATTTCACATTAGCCATTTGGCTTTACC
* * *
82833187 ACATATATATATCTCATACATATTTTACATTAGCCATTCGGCTTTACC
1 ACATATACATATCTCATACATATTTCACATTAGCCATTTGGCTTTACC
*
82833235 ACATATATATAT
1 ACATATACATAT
82833247 ATATATCTTG
Statistics
Matches: 97, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 97 1.00
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (48 bp):
ACATATACATATCTCATACATATTTCACATTAGCCATTTGGCTTTACC
Found at i:82834306 original size:13 final size:13
Alignment explanation
Indices: 82834288--82834317 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
82834278 TATTTCATCT
*
82834288 AAATAAATAAATA
1 AAATAAATAAAAA
82834301 AAATAAATAAAAA
1 AAATAAATAAAAA
82834314 AAAT
1 AAAT
82834318 TCCGATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAATAAATAAAAA
Found at i:82835621 original size:23 final size:23
Alignment explanation
Indices: 82835589--82835632 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
82835579 AAAATTTCAC
* *
82835589 ACATGTAATTTCACATATAATAG
1 ACATGAAATTTAACATATAATAG
*
82835612 ACATGAAATTTAACATTTAAT
1 ACATGAAATTTAACATATAAT
82835633 TATTTTTGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (23 bp):
ACATGAAATTTAACATATAATAG
Found at i:82853142 original size:93 final size:93
Alignment explanation
Indices: 82853030--82853201 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
82853020 GCCCATAAGT
* * *
82853030 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82853095 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
82853123 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82853188 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
82853202 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82853197 original size:46 final size:46
Alignment explanation
Indices: 82853022--82853197 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
82853012 TGTAACCCGC
* * *
82853022 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
82853068 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
82853118 -C-TCA-CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
82853161 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82853198 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:82857773 original size:40 final size:40
Alignment explanation
Indices: 82857678--82857809 Score: 178
Period size: 40 Copynumber: 3.3 Consensus size: 40
82857668 AGACTAAGAT
* * * *
82857678 CCGAAGGCATTTGTGCGGGTTAATAAATCTGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
82857717 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
* * *
82857757 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AACCCGGGTTAAGTC
82857797 CCGAAGGCATTTG
1 CCGAAGGCATTTG
82857810 AGCTAGTCGT
Statistics
Matches: 83, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.41
40 40 0.48
41 9 0.11
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
Found at i:82862079 original size:17 final size:18
Alignment explanation
Indices: 82862053--82862086 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
82862043 AATCTGTGTA
*
82862053 GGGCCTACAAG-CCCATT
1 GGGCCCACAAGACCCATT
82862070 GGGCCCACAAGACCCAT
1 GGGCCCACAAGACCCAT
82862087 CTAGGCCCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.26, C:0.38, G:0.24, T:0.12
Consensus pattern (18 bp):
GGGCCCACAAGACCCATT
Found at i:82867276 original size:41 final size:42
Alignment explanation
Indices: 82867145--82867295 Score: 198
Period size: 42 Copynumber: 3.6 Consensus size: 42
82867135 TAATAGTGAT
*
82867145 ATATCAGGCTTATTGCATAGCAGGCTTTGATGCCGGTGTATG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
* * **
82867187 ATATTAGGCTTATTGCCTAGCAGGATTTGATGCTTGTGTATG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
* *
82867229 ATATCAGGTTTATTGCCTAGTAGGCTTT-ATGCCGGTGTATTG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTA-TG
* *
82867271 A-ATCAGGTTTATTACCTAGCAGGCT
1 ATATCAGGCTTATTGCCTAGCAGGCT
82867296 CTATGTCAGT
Statistics
Matches: 95, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
41 31 0.33
42 64 0.67
ACGTcount: A:0.22, C:0.15, G:0.26, T:0.37
Consensus pattern (42 bp):
ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATG
Found at i:82867324 original size:83 final size:85
Alignment explanation
Indices: 82867138--82867293 Score: 198
Period size: 83 Copynumber: 1.9 Consensus size: 85
82867128 AACTTTGTAA
* *
82867138 TAGTG-AT-ATATCAGGC-TTATTGCATAGCAGGCTTTGATGCCGGTGTATGATATTAGGCTTAT
1 TAGTGTATGATATCAGGCTTTATTGCCTAGCAGGCTTTGATGCCGGTGTATGATATCAGGCTTAT
* *
82867200 TGCCTAGCAGGATTTGATGC
66 TACCTAGCAGGATCTGATGC
* * *
82867220 TTGTGTATGATATCAGG-TTTATTGCCTAGTAGGCTTT-ATGCCGGTGTATTGA-ATCAGGTTTA
1 TAGTGTATGATATCAGGCTTTATTGCCTAGCAGGCTTTGATGCCGGTGTA-TGATATCAGGCTTA
82867282 TTACCTAGCAGG
65 TTACCTAGCAGG
82867294 CTCTATGTCA
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
82 4 0.06
83 32 0.50
84 28 0.44
ACGTcount: A:0.22, C:0.14, G:0.26, T:0.37
Consensus pattern (85 bp):
TAGTGTATGATATCAGGCTTTATTGCCTAGCAGGCTTTGATGCCGGTGTATGATATCAGGCTTAT
TACCTAGCAGGATCTGATGC
Found at i:82869889 original size:33 final size:34
Alignment explanation
Indices: 82869843--82869924 Score: 103
Period size: 34 Copynumber: 2.4 Consensus size: 34
82869833 CTGATACTAG
*
82869843 AATGGGCTTAGGCCC-CACTGATACTATTACTGA
1 AATGGGCTAAGGCCCACACTGATACTATTACTGA
* * * *
82869876 AATGGGCTCAGGCCCAGACTGTTACTATTATTGA
1 AATGGGCTAAGGCCCACACTGATACTATTACTGA
*
82869910 AATGAGCTAAGGCCC
1 AATGGGCTAAGGCCC
82869925 TAACTGAGAC
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 14 0.33
34 28 0.67
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (34 bp):
AATGGGCTAAGGCCCACACTGATACTATTACTGA
Found at i:82874652 original size:22 final size:22
Alignment explanation
Indices: 82874624--82874682 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
82874614 CTTTAGTAGT
* *
82874624 AGGCACCGA-AGTGCGAATCGGA
1 AGGCACC-ATAGTGCAAATCAGA
82874646 AGGCACCATAGTGCAAATCAGA
1 AGGCACCATAGTGCAAATCAGA
*
82874668 AGGCACTATAGTGCA
1 AGGCACCATAGTGCA
82874683 GAACAATTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
21 1 0.03
22 32 0.97
ACGTcount: A:0.36, C:0.22, G:0.29, T:0.14
Consensus pattern (22 bp):
AGGCACCATAGTGCAAATCAGA
Found at i:82876977 original size:23 final size:23
Alignment explanation
Indices: 82876947--82876990 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
82876937 AATTTAGTAA
82876947 CTATAATAACTATCGTTATAGCC
1 CTATAATAACTATCGTTATAGCC
* *
82876970 CTATAATAATTATCTTTATAG
1 CTATAATAACTATCGTTATAG
82876991 AAATTTTACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.07, T:0.41
Consensus pattern (23 bp):
CTATAATAACTATCGTTATAGCC
Found at i:82886272 original size:27 final size:27
Alignment explanation
Indices: 82886234--82886290 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
82886224 CTGTGATAAT
82886234 TTTTTCATGTATTATATCATTTTATAC
1 TTTTTCATGTATTATATCATTTTATAC
82886261 TTTTTCATGTATTATATCATTTTATAC
1 TTTTTCATGTATTATATCATTTTATAC
82886288 TTT
1 TTT
82886291 ATATCTAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.25, C:0.11, G:0.04, T:0.61
Consensus pattern (27 bp):
TTTTTCATGTATTATATCATTTTATAC
Found at i:82889388 original size:43 final size:42
Alignment explanation
Indices: 82889340--82889508 Score: 137
Period size: 43 Copynumber: 4.0 Consensus size: 42
82889330 ATTACGAAGA
*
82889340 TGTGATTACATGTAAGACCATGTCTTGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGT-TGGGACATTGGCATTGTAT
** * *
82889383 TGTGATTATGTGTAAGACCATGTTTGGGACATTGGCGTCGTTAT
1 TGTGATTACATGTAAGACCATG-TTGGGACATTGGCATTG-TAT
* * * * **
82889427 T-AGATTTCGTGTAAGACCATGTTGGGACAGTGGCA-TCAAT
1 TGTGATTACATGTAAGACCATGTTGGGACATTGGCATTGTAT
* * * *
82889467 AAGTGATAACATGTAAGACCATATCTGGGATA-TGGCATTGTA
1 -TGTGATTACATGTAAGACCATGT-TGGGACATTGGCATTGTA
82889509 CAAGCTTTAT
Statistics
Matches: 98, Mismatches: 22, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
40 2 0.02
42 33 0.34
43 58 0.59
44 5 0.05
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.34
Consensus pattern (42 bp):
TGTGATTACATGTAAGACCATGTTGGGACATTGGCATTGTAT
Found at i:82890750 original size:96 final size:98
Alignment explanation
Indices: 82890569--82890810 Score: 276
Period size: 96 Copynumber: 2.5 Consensus size: 98
82890559 GATGTTAGGG
* ** *
82890569 TATATGTGAGCCAGTTTAAGACCATGTTTGGAACATGGCATCAACATTGTTATGAGAGCTGGTGT
1 TATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGT
* * *
82890634 AAGACCATGTCTAGGGCATGGCATTGGCCTC-A
66 AAAACCAAGTCTAGGGCATGGCATTGGCATCGA
* * * * *
82890666 -ATATGTGAGCCAGTGTAGGACCGTGTTTGGAACATGGCATCGGTATTGTTAT-ATGTGTTAGTG
1 TATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGA-GAGCTAGTG
*
82890729 TAAAACCAAGTCT-GGGACATGGCATTGTCATCGA
65 TAAAACCAAGTCTAGGG-CATGGCATTGGCATCGA
* * * * *
82890763 TGTATGAGAGCCAATGTAAGACCATGTTCGGGACATGGCATCGGCATT
1 TATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
82890811 TTACCCTTTT
Statistics
Matches: 120, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
95 4 0.03
96 76 0.63
97 1 0.01
98 39 0.32
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (98 bp):
TATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGT
AAAACCAAGTCTAGGGCATGGCATTGGCATCGA
Found at i:82909459 original size:43 final size:44
Alignment explanation
Indices: 82909411--82909534 Score: 162
Period size: 43 Copynumber: 2.9 Consensus size: 44
82909401 ATTACCGAGA
* *
82909411 TGTGATTACATGTATGACCATGTCTGGGACATTGGCAT-TTTAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATATTTAT
* *
82909454 TGTGATTACGTGTAAGACCATGTCTAGGACATTAGCATATTTAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATATTTAT
* * * *
82909498 T-CGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCAT
82909535 CGATAAGTGA
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
43 64 0.91
44 6 0.09
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.35
Consensus pattern (44 bp):
TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATATTTAT
Found at i:82923342 original size:40 final size:40
Alignment explanation
Indices: 82923165--82923347 Score: 153
Period size: 40 Copynumber: 4.6 Consensus size: 40
82923155 TTCGAATGAT
* * * *
82923165 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGGCTATGTCCCGAAGGCATTCGTGC-GAGTTACTAA
** * * *
82923205 ATCCGGAATAAGAT-CCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGGCTATG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* * * * *
82923245 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGGCTATG-TCCCGAAGGCATTCGTGCGAGTTACTAA
*
82923285 ATCCGGG-T-TGTCCCGAAGGCATTCGTGCGAGTTACTGTA
1 ATCCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACT-AA
82923324 A-CCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTATGTCCCGAAGGCATT
82923348 TGAATGTGTA
Statistics
Matches: 118, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
37 1 0.01
38 27 0.23
39 4 0.03
40 80 0.68
41 6 0.05
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:82926902 original size:27 final size:27
Alignment explanation
Indices: 82926862--82926943 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
82926852 ACTAGCAAAT
* *
82926862 ACTAGCTCGTCAAATAGACTGGCGAAC
1 ACTAGCTCGCCAAATAGATTGGCGAAC
* ** * * *
82926889 TCTAGCTTTCCAAACAGATTAGCGAGC
1 ACTAGCTCGCCAAATAGATTGGCGAAC
82926916 ACTAGCTCGCCAAATAGATTGGCGAAC
1 ACTAGCTCGCCAAATAGATTGGCGAAC
82926943 A
1 A
82926944 TGATTTCAAT
Statistics
Matches: 41, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.21
Consensus pattern (27 bp):
ACTAGCTCGCCAAATAGATTGGCGAAC
Found at i:82929509 original size:9 final size:11
Alignment explanation
Indices: 82929487--82929512 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
82929477 CTTGACAAAA
82929487 ATAACAATTAT
1 ATAACAATTAT
82929498 ATAACAATTAT
1 ATAACAATTAT
82929509 ATAA
1 ATAA
82929513 TATTGCATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.35
Consensus pattern (11 bp):
ATAACAATTAT
Found at i:82930124 original size:11 final size:11
Alignment explanation
Indices: 82930108--82930231 Score: 54
Period size: 11 Copynumber: 12.1 Consensus size: 11
82930098 AGAATTAATC
82930108 AAATTAATATT
1 AAATTAATATT
82930119 AAATTAATA--
1 AAATTAATATT
*
82930128 AAA-TATTATCT
1 AAATTAATAT-T
** *
82930139 TGATGAATATT
1 AAATTAATATT
82930150 AAATTAA-ATT
1 AAATTAATATT
* *
82930160 TAA-T-ATATC
1 AAATTAATATT
*
82930169 ATATTAATATT
1 AAATTAATATT
82930180 AAATTAATA--
1 AAATTAATATT
*
82930189 AAA-TATTATCT
1 AAATTAATAT-T
* *
82930200 ATATAAATATT
1 AAATTAATATT
82930211 AAATT--TATT
1 AAATTAATATT
*
82930220 AAAATAATATT
1 AAATTAATATT
82930231 A
1 A
82930232 TCTTTGAAAA
Statistics
Matches: 79, Mismatches: 21, Indels: 26
0.63 0.17 0.21
Matches are distributed among these distances:
8 9 0.11
9 18 0.23
10 6 0.08
11 38 0.48
12 8 0.10
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (11 bp):
AAATTAATATT
Found at i:82930151 original size:31 final size:30
Alignment explanation
Indices: 82930113--82930225 Score: 129
Period size: 31 Copynumber: 3.7 Consensus size: 30
82930103 TAATCAAATT
*
82930113 AATATTAAATTAATAAAATATTATCTTGATG
1 AATATTAAATTAATAAAATATTATCTT-ATA
** * *
82930144 AATATTAAATTAAATTTAATA-TATCATATT
1 AATATTAAATT-AATAAAATATTATCTTATA
82930174 AATATTAAATTAATAAAATATTATCTATATA
1 AATATTAAATTAATAAAATATTATCT-TATA
*
82930205 AATATTAAATTTATTAAAATA
1 AATATTAAA-TTAATAAAATA
82930226 ATATTATCTT
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
29 7 0.10
30 17 0.25
31 28 0.41
32 17 0.25
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (30 bp):
AATATTAAATTAATAAAATATTATCTTATA
Found at i:82935199 original size:43 final size:42
Alignment explanation
Indices: 82935137--82935258 Score: 165
Period size: 43 Copynumber: 2.9 Consensus size: 42
82935127 TATTGTACCA
*
82935137 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
* * * *
82935179 ATGCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTACATGTAA-TCTCATATCG
*
82935222 ATGTCATATCCCAGATATGGTCTTACATGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
82935259 GTAACCCTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 33 0.49
43 35 0.51
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
Found at i:82940273 original size:27 final size:26
Alignment explanation
Indices: 82940229--82940280 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
82940219 CTCGCTGCAA
*
82940229 TCTGGTGGCCTCGCCACACATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
82940256 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
82940281 GCAGCCTCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.29, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:82941405 original size:19 final size:20
Alignment explanation
Indices: 82941362--82941417 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
82941352 ATTGGGTCTT
82941362 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
82941382 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
* *
82941401 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
82941418 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:82945730 original size:27 final size:27
Alignment explanation
Indices: 82945700--82946057 Score: 285
Period size: 27 Copynumber: 13.3 Consensus size: 27
82945690 TAGATTGGAC
* **
82945700 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* * * *
82945727 TACCCTCGATTAGCAAAATTATCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* *
82945754 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* *
82945781 TATCCC-TGATTTGTAAAA-TATCGAAA
1 TA-CCCTTGATTTGTAAAATTACCAAAA
** * *
82945807 TACCCTTGACCTGTAAAATTATCGAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
** * * * *
82945834 TATGCTCGACTTGTAAAATTATCGAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
**
82945861 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* * * *
82945888 TACCCCTGATTTGGAAAATTATCGAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* *
82945915 TACCCTTGATTTGGAAAATGACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* * *
82945942 TACCCCTAATTTAG-AAAATTACCGAAA
1 TACCCTTGATTT-GTAAAATTACCAAAA
*
82945969 TACCCTTGATTTGGAAAATTA-CAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* **
82945995 GTA-CCTCTAATTTACAAAATTACCAAAA
1 -TACCCT-TGATTTGTAAAATTACCAAAA
* * *
82946023 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
*
82946050 CACCCTTG
1 TACCCTTG
82946058 TAGGGTGAAA
Statistics
Matches: 269, Mismatches: 53, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
25 3 0.01
26 26 0.10
27 228 0.85
28 12 0.04
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
TACCCTTGATTTGTAAAATTACCAAAA
Found at i:82945765 original size:54 final size:56
Alignment explanation
Indices: 82945700--82946055 Score: 326
Period size: 54 Copynumber: 6.6 Consensus size: 56
82945690 TAGATTGGAC
* ** *
82945700 TACCCTTGGTTTACAAAATTACCAAAATACCCTC-GA-TTAGCAAAATTATCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTCTGATTTAGCAAAATTATCGAAA
* * * *
82945754 TACCCCTGGTTTGTAAAATTACCAAAATATCC-CTGATTT-GTAAAA-TATCGAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTCTGATTTAGCAAAATTATCGAAA
** * * ** * *
82945807 TACCCTTGACCTGTAAAATTATCGAAATATGCTC-GACTT-GTAAAATTATCGAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTCTGATTTAGCAAAATTATCGAAA
** *
82945861 TACCCTCAATTTGTAAAATTACCAAAATACCC-CTGATTT-GGAAAATTATCGAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTCTGATTTAGCAAAATTATCGAAA
* * * *
82945915 TACCCTTGATTTGGAAAATGACCAAAATACCC-CTAATTTAG-AAAATTACCGAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTCTGATTTAGCAAAATTATCGAAA
* * * *
82945969 TACCCTTGATTTGGAAAATTA-CAAAAGTA-CCTCTAATTTA-CAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA-TACCCTCTGATTTAGCAAAATTATCGAAA
* * * *
82946023 TACCCTTGGTTTGTAGATTTACCAAAACACCCT
1 TACCCTTGATTTGTAAAATTACCAAAATACCCT
82946056 TGTAGGGTGA
Statistics
Matches: 254, Mismatches: 37, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
53 51 0.20
54 192 0.76
55 11 0.04
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.30
Consensus pattern (56 bp):
TACCCTTGATTTGTAAAATTACCAAAATACCCTCTGATTTAGCAAAATTATCGAAA
Found at i:82946215 original size:27 final size:27
Alignment explanation
Indices: 82946185--82946236 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
82946175 ATGACTTCCA
82946185 AAAATTA-AAGAAATACCATTGGTTTGC
1 AAAATTACAA-AAATACCATTGGTTTGC
* *
82946212 AAAATTACCAAAATACCCTTGGTTT
1 AAAATTACAAAAATACCATTGGTTT
82946237 ATAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (27 bp):
AAAATTACAAAAATACCATTGGTTTGC
Found at i:82946329 original size:202 final size:202
Alignment explanation
Indices: 82946009--82946382 Score: 712
Period size: 202 Copynumber: 1.9 Consensus size: 202
82945999 CTCTAATTTA
*
82946009 CAAAATTACCAAAATACCCTTGGTTTGTAGATTTACCAAAACACCCTTGTAGGGTGAAATGACTA
1 CAAAATTACCAAAATACCCTTGGTTTATAGATTTACCAAAACACCCTTGTAGGGTGAAATGACTA
82946074 AAATACCCCTAATAGGTAAAAAGACCGTTCTGCCCCTCTAGGGTATATGACTCACTGATAATACA
66 AAATACCCCTAATAGGTAAAAAGACCGTTCTGCCCCTCTAGGGTATATGACTCACTGATAATACA
*
82946139 ATTTGATTGATTTGACTATGTTTTGACTGAGAATGTATGACTTCCAAAAATTAAAGAAATACCAT
131 ATTTGATTGATTTGACTATGTTTTGACTGAAAATGTATGACTTCCAAAAATTAAAGAAATACCAT
82946204 TGGTTTG
196 TGGTTTG
82946211 CAAAATTACCAAAATACCCTTGGTTTATAGATTTACCAAAACACCCTTGTAGGGTGAAATGACTA
1 CAAAATTACCAAAATACCCTTGGTTTATAGATTTACCAAAACACCCTTGTAGGGTGAAATGACTA
*
82946276 AAATACCCCTAATAGGTAAAAAGACCGTTCTGCCCTTCTAGGGTATATGACTCACTGATAATACA
66 AAATACCCCTAATAGGTAAAAAGACCGTTCTGCCCCTCTAGGGTATATGACTCACTGATAATACA
*
82946341 ATTTGATTGATTTGGCTATGTTTTGACTGAAAATGTATGACT
131 ATTTGATTGATTTGACTATGTTTTGACTGAAAATGTATGACT
82946383 GTGATTGAAC
Statistics
Matches: 168, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
202 168 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (202 bp):
CAAAATTACCAAAATACCCTTGGTTTATAGATTTACCAAAACACCCTTGTAGGGTGAAATGACTA
AAATACCCCTAATAGGTAAAAAGACCGTTCTGCCCCTCTAGGGTATATGACTCACTGATAATACA
ATTTGATTGATTTGACTATGTTTTGACTGAAAATGTATGACTTCCAAAAATTAAAGAAATACCAT
TGGTTTG
Found at i:82946542 original size:41 final size:41
Alignment explanation
Indices: 82946497--82946619 Score: 142
Period size: 41 Copynumber: 3.0 Consensus size: 41
82946487 GGAGGAAGAA
* * *
82946497 ATTGAGGATTCCATGGTTGCCTGACAACCGTGGATCCACAG
1 ATTGAGGATTCCATGGTTGCTTGACGACCATGGATCCACAG
* *
82946538 ATTGATGA-TCGCATGGTTGCTTGACGATCATGGATCCACCA-
1 ATTGAGGATTC-CATGGTTGCTTGACGACCATGGATCCA-CAG
* * *
82946579 ATTAAGGATCCCATGGTTGCTTGACGACTATGGATCCACAG
1 ATTGAGGATTCCATGGTTGCTTGACGACCATGGATCCACAG
82946620 GTGGCTTTTA
Statistics
Matches: 68, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
40 4 0.06
41 61 0.90
42 3 0.04
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (41 bp):
ATTGAGGATTCCATGGTTGCTTGACGACCATGGATCCACAG
Found at i:82947753 original size:2 final size:2
Alignment explanation
Indices: 82947746--82947783 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
82947736 AGTATAGTTG
* *
82947746 AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82947784 TCGGCCATCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Found at i:82948430 original size:28 final size:27
Alignment explanation
Indices: 82948394--82948459 Score: 98
Period size: 26 Copynumber: 2.4 Consensus size: 27
82948384 TAAGTGTGCG
*
82948394 GGCAATAAGTGTTCACGGTTGTGAGATT
1 GGCACTAAGTGTT-ACGGTTGTGAGATT
*
82948422 GGCACTAAGTG-TGCGGTTGTGAGATT
1 GGCACTAAGTGTTACGGTTGTGAGATT
82948448 GGCACTAAGTGT
1 GGCACTAAGTGT
82948460 GCGGGCTTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
26 24 0.69
27 1 0.03
28 10 0.29
ACGTcount: A:0.23, C:0.12, G:0.35, T:0.30
Consensus pattern (27 bp):
GGCACTAAGTGTTACGGTTGTGAGATT
Found at i:82948445 original size:26 final size:26
Alignment explanation
Indices: 82948409--82948463 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
82948399 TAAGTGTTCA
82948409 CGGTTGTGAGATTGGCACTAAGTGTG
1 CGGTTGTGAGATTGGCACTAAGTGTG
82948435 CGGTTGTGAGATTGGCACTAAGTGTG
1 CGGTTGTGAGATTGGCACTAAGTGTG
82948461 CGG
1 CGG
82948464 GCTTGAAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.18, C:0.13, G:0.40, T:0.29
Consensus pattern (26 bp):
CGGTTGTGAGATTGGCACTAAGTGTG
Found at i:82948489 original size:29 final size:29
Alignment explanation
Indices: 82948421--82948520 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
82948411 GTTGTGAGAT
** *
82948421 TGGCACTAAGTGTGCG-GTTGTGAG-A-T
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
* *
82948447 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
82948476 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
82948505 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
82948521 TGGTTGATTA
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
26 16 0.26
27 1 0.02
28 9 0.15
29 36 0.58
ACGTcount: A:0.24, C:0.15, G:0.34, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:82957195 original size:40 final size:40
Alignment explanation
Indices: 82957140--82957269 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
82957130 AACATTGGAA
82957140 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
82957180 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
82957219 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
82957260 CTATATCCGG
1 ATATATCCGG
82957270 TTAAATCCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:82965283 original size:40 final size:40
Alignment explanation
Indices: 82965238--82965404 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
82965228 CGGAATATAA
82965238 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
82965278 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
82965318 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
82965358 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
82965397 CCGGATAT
1 CCGGATAT
82965405 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 14 0.13
40 90 0.87
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:82967675 original size:29 final size:29
Alignment explanation
Indices: 82967641--82967715 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 29
82967631 TACTCGATTT
* * *
82967641 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
82967670 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
82967699 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
82967716 TATTTCCAGC
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.24, C:0.36, G:0.19, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:82967756 original size:27 final size:28
Alignment explanation
Indices: 82967700--82967797 Score: 164
Period size: 27 Copynumber: 3.5 Consensus size: 28
82967690 CTTCGAGCTC
82967700 GCACACTTAGTGCCATTATTTCCAGCAT
1 GCACACTTAGTGCCATTATTTCCAGCAT
*
82967728 GCACACTCAGTGCCATT-TTTCCAGCAT
1 GCACACTTAGTGCCATTATTTCCAGCAT
82967755 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCAT-TATTTCCAGCAT
82967784 GCACAC-TAGTGCCA
1 GCACACTTAGTGCCA
82967798 ATCTCGTCAC
Statistics
Matches: 66, Mismatches: 2, Indels: 4
0.92 0.03 0.06
Matches are distributed among these distances:
27 25 0.38
28 25 0.38
29 16 0.24
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.29
Consensus pattern (28 bp):
GCACACTTAGTGCCATTATTTCCAGCAT
Found at i:82970720 original size:39 final size:40
Alignment explanation
Indices: 82970662--82970866 Score: 186
Period size: 39 Copynumber: 5.2 Consensus size: 40
82970652 CGGAATACAA
* *
82970662 CCGGATATAACCACATGCACGAATGCC-TCGGGTCTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
82970701 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
*
82970741 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* * * * *
82970781 TCGGAT-TAGTC-ACTAGCA-TAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTTGCACGAA-TGCCTTCGGGTCTTAGC
* * * ** * *
82970820 CCGGATTTAACTACTAGCATAAATGTCTTC-GGACTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
82970859 CCGGATAT
1 CCGGATAT
82970867 CATTTAATTG
Statistics
Matches: 138, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
38 2 0.01
39 67 0.49
40 67 0.49
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:82970744 original size:40 final size:39
Alignment explanation
Indices: 82970662--82970866 Score: 191
Period size: 40 Copynumber: 5.2 Consensus size: 39
82970652 CGGAATACAA
* *
82970662 CCGGATATAACCACATGCACGAATGCC-TCGGGTCTTAGC
1 CCGGATATAA-CACTTGCACAAATGCCTTCGGGTCTTAGC
* *
82970701 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
* *
82970741 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * * *
82970781 TCGGAT-TAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
82970820 CCGGATTTAACTACTAGCATAAATGTCTTC-GGACTTAGC
1 CCGGATATAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
82970859 CCGGATAT
1 CCGGATAT
82970867 CATTTAATTG
Statistics
Matches: 138, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
38 1 0.01
39 67 0.49
40 70 0.51
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:82970807 original size:79 final size:79
Alignment explanation
Indices: 82970662--82970830 Score: 216
Period size: 79 Copynumber: 2.1 Consensus size: 79
82970652 CGGAATACAA
* * *
82970662 CCGGATATAACCACATGCACGAATGCCTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATGC
1 CCGGATTTAACAACATGCACGAATGCCTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATGC
*
82970727 CTTCGGGTATTAGC
66 CTTCGGGTATTAAC
* * * * *
82970741 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCTCGGATTAG-TC-ACTAGCATAATT
1 CCGGATTTAACAACATGCACGAATGCC-TCGGGTCTTAGCCCGGA-TAGAACGACTAGCACAAAT
*
82970804 GCCTTCGGGTCTTAAC
64 GCCTTCGGGTATTAAC
82970820 CCGGATTTAAC
1 CCGGATTTAAC
82970831 TACTAGCATA
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 58 0.74
80 17 0.22
81 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATTTAACAACATGCACGAATGCCTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATGC
CTTCGGGTATTAAC
Found at i:82970850 original size:79 final size:81
Alignment explanation
Indices: 82970678--82970864 Score: 213
Period size: 79 Copynumber: 2.4 Consensus size: 81
82970668 ATAACCACAT
* * *
82970678 GCACGAATGCC-TCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAATGCCTTCGGGTATTAAC
*
82970741 CCGGATTTAACAACTT
66 CCGGATTTAACAACTA
* * * * * *
82970757 GCACGAATGCCTTCGGGTCTTAGCTCGGATTAG-TC-ACTAGCATAATTGCCTTCGGGTCTTAAC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAATGCCTTCGGGTATTAAC
*
82970820 CCGGATTTAACTACTA
66 CCGGATTTAACAACTA
* * *
82970836 GCATAAATGTCTTC-GGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
82970865 ATCATTTAAT
Statistics
Matches: 92, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
78 13 0.14
79 59 0.64
80 17 0.18
81 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (81 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAATGCCTTCGGGTATTAAC
CCGGATTTAACAACTA
Found at i:82978677 original size:40 final size:39
Alignment explanation
Indices: 82978632--82978839 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
82978622 CGGAATACAA
*
82978632 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
82978672 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
82978712 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
82978752 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * *
82978792 CCGGATATAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
82978832 CCGGATAT
1 CCGGATAT
82978840 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:82978779 original size:80 final size:81
Alignment explanation
Indices: 82978632--82978837 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
82978622 CGGAATACAA
* * *
82978632 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
82978696 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * * *
82978712 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
82978775 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
82978792 CCGGATATAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
82978838 ATCATTTAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 103 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:83012366 original size:12 final size:12
Alignment explanation
Indices: 83012349--83012374 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
83012339 AATCACTAGC
83012349 ACTCCACATTAT
1 ACTCCACATTAT
83012361 ACTCCACATTAT
1 ACTCCACATTAT
83012373 AC
1 AC
83012375 ATTTCAAGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.31
Consensus pattern (12 bp):
ACTCCACATTAT
Found at i:83015935 original size:46 final size:46
Alignment explanation
Indices: 83015795--83015935 Score: 155
Period size: 46 Copynumber: 3.0 Consensus size: 46
83015785 GCCCATAAGC
*
83015795 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT--T
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--TACATC-CTAGT
* * *
83015842 GAACTCGGACTCAACTCAACGAGTTCGGA--CATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCC-T-AGT
* *
83015888 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCTAGT
83015934 GA
1 GA
83015936 CATGTCACTT
Statistics
Matches: 79, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.01
43 6 0.08
45 2 0.03
46 35 0.44
47 29 0.37
48 6 0.08
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCTAGT
Found at i:83020621 original size:29 final size:29
Alignment explanation
Indices: 83020588--83020661 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
83020578 CCTTCGAGCT
83020588 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
83020617 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
83020646 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
83020662 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:83020622 original size:58 final size:58
Alignment explanation
Indices: 83020529--83020661 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
83020519 ATACTCGATT
* * * * *
83020529 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
83020587 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
83020645 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
83020662 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:83026504 original size:40 final size:39
Alignment explanation
Indices: 83026339--83026522 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
83026329 AAATTGAATG
* * *
83026339 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
83026379 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
83026419 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
83026459 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
83026498 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
83026523 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:83026547 original size:80 final size:81
Alignment explanation
Indices: 83026379--83026567 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
83026369 GCTGGAAATT
* * * *
83026379 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
83026444 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
83026460 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
83026523 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
83026539 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
83026568 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:83034598 original size:40 final size:39
Alignment explanation
Indices: 83034433--83034616 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
83034423 AAATTGAATG
* * *
83034433 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
83034473 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
83034513 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
83034553 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
83034592 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
83034617 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:83034641 original size:80 final size:81
Alignment explanation
Indices: 83034473--83034661 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
83034463 GCTGGAAATT
* * * *
83034473 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
83034538 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
83034554 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
83034617 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
83034633 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
83034662 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:83036654 original size:38 final size:38
Alignment explanation
Indices: 83036567--83036732 Score: 224
Period size: 38 Copynumber: 4.3 Consensus size: 38
83036557 AAACCCAAAC
* * * *
83036567 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGAT
* *
83036607 ATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
83036645 ATAATACCAGCACGAAGCCTGCGGGATTTAACCAGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* *
83036683 ATATTACCAGCACGAAGCCTGCGGGATTTAACACGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
83036721 ATAATTCCAGCA
1 ATAATACCAGCA
83036733 TATAGCCTGT
Statistics
Matches: 112, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
38 87 0.78
39 3 0.03
40 22 0.20
ACGTcount: A:0.34, C:0.25, G:0.21, T:0.20
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:83059582 original size:20 final size:19
Alignment explanation
Indices: 83059541--83059588 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
83059531 AAAGGTGAGT
*
83059541 AGAGGGGA-AAAGGGAAAG
1 AGAGGGGAGAAAAGGAAAG
*
83059559 AGAGGGGAGAAAATGAAAG
1 AGAGGGGAGAAAAGGAAAG
*
83059578 AAGAGTGGAGA
1 -AGAGGGGAGA
83059589 GTTTAGGGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 8 0.32
19 8 0.32
20 9 0.36
ACGTcount: A:0.50, C:0.00, G:0.46, T:0.04
Consensus pattern (19 bp):
AGAGGGGAGAAAAGGAAAG
Found at i:83063237 original size:27 final size:27
Alignment explanation
Indices: 83063207--83063689 Score: 611
Period size: 27 Copynumber: 17.9 Consensus size: 27
83063197 GTACTCCCGA
83063207 TTTACAGAATTACCGTTTTACCCTCAG
1 TTTACAGAATTACCGTTTTACCCTCAG
* *
83063234 TTTATAGAATTACTGTTTTACCCTC-G
1 TTTACAGAATTACCGTTTTACCCTCAG
83063260 ATTTACAGAATTACCGTTTTACCCTCAG
1 -TTTACAGAATTACCGTTTTACCCTCAG
83063288 TTTACAGAATTACCGTTTTACCCTC-G
1 TTTACAGAATTACCGTTTTACCCTCAG
*
83063314 ATTTACAGAATTACTGTTTTACCCTCAG
1 -TTTACAGAATTACCGTTTTACCCTCAG
* * * *
83063342 TTTACAGAAGTACTGTTTTACCTTCAA
1 TTTACAGAATTACCGTTTTACCCTCAG
*
83063369 TTCACAGAATTACCGTTTTACCCTCAG
1 TTTACAGAATTACCGTTTTACCCTCAG
*
83063396 TTTACAGAATTACCTTTTTACCCTCAG
1 TTTACAGAATTACCGTTTTACCCTCAG
83063423 TTTACAGAATTACCGTTTTACCCTC-G
1 TTTACAGAATTACCGTTTTACCCTCAG
*
83063449 ATTTACAAAATTACCGTTTTACCCTCAG
1 -TTTACAGAATTACCGTTTTACCCTCAG
*
83063477 TTTACAGAATTACTGTTTTACCCTC-G
1 TTTACAGAATTACCGTTTTACCCTCAG
*
83063503 ATTTATAGAATTACCGTTTTACCCTCAG
1 -TTTACAGAATTACCGTTTTACCCTCAG
**
83063531 TTTACAGAATTATTGTTTTACCCTC-G
1 TTTACAGAATTACCGTTTTACCCTCAG
* *
83063557 ATTTACAGAATTACAGTTTTACCCTCAA
1 -TTTACAGAATTACCGTTTTACCCTCAG
** * * *
83063585 TTTGTAAAATTATCGTTTTACCCT-TG
1 TTTACAGAATTACCGTTTTACCCTCAG
* * *
83063611 ATTTACAAAATTACTGGTTTACCCTCAG
1 -TTTACAGAATTACCGTTTTACCCTCAG
* * *
83063639 TTTACAAAATTATCGTTTTACCCT-TG
1 TTTACAGAATTACCGTTTTACCCTCAG
83063665 ATTTACAGAATTACCGTTTTACCCT
1 -TTTACAGAATTACCGTTTTACCCT
83063690 TGATTGTGAA
Statistics
Matches: 397, Mismatches: 46, Indels: 26
0.85 0.10 0.06
Matches are distributed among these distances:
26 6 0.02
27 386 0.97
28 5 0.01
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
TTTACAGAATTACCGTTTTACCCTCAG
Found at i:83063729 original size:27 final size:27
Alignment explanation
Indices: 83063699--83063894 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
83063689 TTGATTGTGA
*
83063699 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
83063726 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
83063753 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
83063780 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
83063807 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
83063834 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
83063861 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
83063888 AATTACC
1 AATTACC
83063895 ATTTTGCCCC
Statistics
Matches: 144, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:83063767 original size:54 final size:54
Alignment explanation
Indices: 83063699--83063895 Score: 279
Period size: 54 Copynumber: 3.6 Consensus size: 54
83063689 TTGATTGTGA
* * * *
83063699 AATTACTGAAATACCCCTGTAGGGTAGAATTTCCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* *
83063753 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
*
83063807 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* * * *
83063861 AATTACCGAGATACCCTTGTGGGGTAAAATTACCA
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCA
83063896 TTTTGCCCCT
Statistics
Matches: 127, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 126 0.99
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
Found at i:83064131 original size:27 final size:26
Alignment explanation
Indices: 83064093--83064175 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
83064083 TGGAGGAAGC
83064093 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
83064120 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* ** * *
83064146 GTATTTGGTAACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
83064173 GTT
1 GTT
83064176 GACCGATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 10 0.20
27 40 0.80
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:83064291 original size:22 final size:22
Alignment explanation
Indices: 83064263--83064321 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
83064253 CCCGTTATTA
83064263 ATGGCTTTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * * *
83064285 ATGGCTTTATGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
83064307 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
83064322 ACGTATTTAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:83064500 original size:27 final size:27
Alignment explanation
Indices: 83064446--83064503 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
83064436 TATTTTGTTA
* * *
83064446 GGTGGGTTTGCCACATTATCTGATTCT
1 GGTGGCTTTGCCACAATAACTGATTCT
83064473 GGTGGCTTTGCCACAATAACTG-TATCT
1 GGTGGCTTTGCCACAATAACTGAT-TCT
83064500 GGTG
1 GGTG
83064504 ACTCTGTCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.17, C:0.19, G:0.28, T:0.36
Consensus pattern (27 bp):
GGTGGCTTTGCCACAATAACTGATTCT
Found at i:83064654 original size:6 final size:6
Alignment explanation
Indices: 83064645--83064819 Score: 164
Period size: 6 Copynumber: 28.8 Consensus size: 6
83064635 TTGCATTCAC
* *
83064645 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
83064694 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTA
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
83064743 ATTCTG ATTCTG ATTCTG GTTCTG -TTACTA ATAT-TG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG
83064791 ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
83064820 CATTTTGGTT
Statistics
Matches: 140, Mismatches: 15, Indels: 28
0.77 0.08 0.15
Matches are distributed among these distances:
5 9 0.06
6 120 0.86
7 8 0.06
8 3 0.02
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:83064758 original size:73 final size:73
Alignment explanation
Indices: 83064645--83064808 Score: 285
Period size: 73 Copynumber: 2.2 Consensus size: 73
83064635 TTGCATTCAC
*
83064645 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
83064710 TGATTCTG
66 TGATTCTG
* *
83064718 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGGTTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
83064783 TGATTCTG
66 TGATTCTG
83064791 ATTCTG-TTACTGATTCTG
1 ATTCTGATT-CTGATTCTG
83064809 ATTCTGATTC
Statistics
Matches: 87, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
72 2 0.02
73 85 0.98
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.48
Consensus pattern (73 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTG
Found at i:83064837 original size:30 final size:30
Alignment explanation
Indices: 83064712--83064840 Score: 154
Period size: 30 Copynumber: 4.3 Consensus size: 30
83064702 ACTGATTCTG
*
83064712 ATTCTGATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGATTCTGTTACC-A
* *
83064743 ATTCTGATTCTGATTCTGGTTCTGTTACTA
1 ATTCTGATTCTGATTCTGATTCTGTTACCA
**
83064773 ATAT-TGATTCTGATTCTGATTCTGTTACTG
1 AT-TCTGATTCTGATTCTGATTCTGTTACCA
* *
83064803 ATTCTGATTCTGATTCTCATTTTGGTT-CCA
1 ATTCTGATTCTGATTCTGATTCT-GTTACCA
83064833 ATTCTGAT
1 ATTCTGAT
83064841 AATGTTTCTT
Statistics
Matches: 86, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
29 1 0.01
30 55 0.64
31 30 0.35
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGATTCTGTTACCA
Found at i:83067634 original size:20 final size:20
Alignment explanation
Indices: 83067605--83067643 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
83067595 TAAGGGCATG
*
83067605 GGCGTGTCCCAAGCCACACT
1 GGCGTATCCCAAGCCACACT
83067625 GGCGTATCCCAAGCCACAC
1 GGCGTATCCCAAGCCACAC
83067644 GGGTGTGTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.41, G:0.23, T:0.13
Consensus pattern (20 bp):
GGCGTATCCCAAGCCACACT
Found at i:83068611 original size:43 final size:43
Alignment explanation
Indices: 83068481--83068645 Score: 183
Period size: 43 Copynumber: 3.8 Consensus size: 43
83068471 TTCTGGTATG
* *
83068481 TGATTACATGTAAGACCACGCCTGGGACATTGGCATCGAT-TT
1 TGATTTCATGTAAGACCACGTCTGGGACATTGGCATCGATATT
* ** * *
83068523 GAGATTTACATGTAAGACCATTTCTGGGACATCGACATCG-TATT
1 -TGATTT-CATGTAAGACCACGTCTGGGACATTGGCATCGATATT
* *
83068567 TGATTTCGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATT
1 TGATTTCATGTAAGACCAC-GTCTGGGACATTGGCATCGATATT
* *
83068610 TGATTACATGTAAGACCACATCTGGGACATTGGCAT
1 TGATTTCATGTAAGACCACGTCTGGGACATTGGCAT
83068646 TATACTAGTT
Statistics
Matches: 99, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
42 25 0.25
43 44 0.44
44 30 0.30
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (43 bp):
TGATTTCATGTAAGACCACGTCTGGGACATTGGCATCGATATT
Found at i:83072800 original size:37 final size:37
Alignment explanation
Indices: 83072750--83072877 Score: 229
Period size: 37 Copynumber: 3.4 Consensus size: 37
83072740 TTATTACGAA
*
83072750 GTCTTACCTGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
83072787 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
83072824 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
83072861 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
83072878 TTTCCAAGTT
Statistics
Matches: 88, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
37 83 0.94
38 5 0.06
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:83073020 original size:49 final size:49
Alignment explanation
Indices: 83072964--83073152 Score: 346
Period size: 49 Copynumber: 3.9 Consensus size: 49
83072954 CACACATATA
83072964 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
83073013 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
*
83073060 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
*
83073109 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
83073153 CATCTCATAC
Statistics
Matches: 137, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
47 46 0.34
49 91 0.66
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
Found at i:83073071 original size:96 final size:96
Alignment explanation
Indices: 83072964--83073154 Score: 364
Period size: 96 Copynumber: 2.0 Consensus size: 96
83072954 CACACATATA
83072964 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
83073029 TCGGCCATTAGGCCTTATCACATATATACAC
66 TCGGCCATTAGGCCTTATCACATATATACAC
*
83073060 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
83073125 TTGGCCATTAGGCCTTATCACATATATACA
66 TCGGCCATTAGGCCTTATCACATATATACA
83073155 TCTCATACAT
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 93 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (96 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACAC
Found at i:83076893 original size:40 final size:40
Alignment explanation
Indices: 83076844--83077104 Score: 253
Period size: 40 Copynumber: 6.5 Consensus size: 40
83076834 CCAGCATGAT
* *
83076844 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
83076884 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
83076924 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
83076964 TGCTCTTCGGAATTTAG-CCGGATATAACCACAAGCAC-AA
1 TGCTCTTCGGGACTTAGCCCGGATAT-ATCACTAGCACGAA
* * * * * *
83077003 TTGC-CTTCGGGTCTTAACCCGGGTATAACAACTCGCACAAA
1 -TGCTCTTCGGGACTTAGCCCGGATATATC-ACTAGCACGAA
* **
83077044 TGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
*
83077084 TGC-CTTCGGGACTCAGCCCGG
1 TGCTCTTCGGGACTTAGCCCGG
83077105 GTATCATTCA
Statistics
Matches: 190, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
39 21 0.11
40 166 0.87
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:83081113 original size:12 final size:12
Alignment explanation
Indices: 83081097--83081136 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
83081087 CCTTAATTTC
*
83081097 CTCCTCAAATCC
1 CTCCTCAAATCA
83081109 CTCCTCAAATCA
1 CTCCTCAAATCA
83081121 CTCCTCAAATCA
1 CTCCTCAAATCA
83081133 CTCC
1 CTCC
83081137 AATTGATCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.28, C:0.47, G:0.00, T:0.25
Consensus pattern (12 bp):
CTCCTCAAATCA
Found at i:83093163 original size:29 final size:29
Alignment explanation
Indices: 83093129--83093347 Score: 95
Period size: 29 Copynumber: 7.6 Consensus size: 29
83093119 TACTCGATTT
* * *
83093129 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
83093158 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
83093187 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * *** * *
83093216 TGCACACTCAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
83093245 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
83093274 TGCACACTTAGTGCCATA-AATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
83093303 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
83093332 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
83093348 ATCTCGTCAC
Statistics
Matches: 166, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
28 1 0.01
29 164 0.99
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:83093221 original size:58 final size:58
Alignment explanation
Indices: 83093188--83093347 Score: 284
Period size: 58 Copynumber: 2.8 Consensus size: 58
83093178 CTTCGAGCTC
**
83093188 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATAAATTTCCAGCAT
*
83093246 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATAAATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATAAATTTCCAGCAT
*
83093304 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
1 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCA
83093348 ATCTCGTCAC
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 99 1.00
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (58 bp):
GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATAAATTTCCAGCAT
Found at i:83093250 original size:87 final size:87
Alignment explanation
Indices: 83093167--83093347 Score: 283
Period size: 87 Copynumber: 2.1 Consensus size: 87
83093157 CCGCACACAC
* * *
83093167 AGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCC
1 AGTGCCATACACTTCCAGCAT-GCACACTTAGTGCCATAAATTTCCAGCATGCACACTCAGTGCC
*
83093231 ATATTTTTCCAGCATGCACACTT
65 ATATATTTCCAGCATGCACACTT
* * *
83093254 AGTGCCATATATTTCCAGCATGCACACTTAGTGCCATAAATTTCCAGCATGCACACTTAGTGCCA
1 AGTGCCATACACTTCCAGCATGCACACTTAGTGCCATAAATTTCCAGCATGCACACTCAGTGCCA
83093319 TATATTTCCAGCATGCACACTT
66 TATATTTCCAGCATGCACACTT
83093341 AGTGCCA
1 AGTGCCA
83093348 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
87 85 0.99
88 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.29
Consensus pattern (87 bp):
AGTGCCATACACTTCCAGCATGCACACTTAGTGCCATAAATTTCCAGCATGCACACTCAGTGCCA
TATATTTCCAGCATGCACACTT
Found at i:83096044 original size:40 final size:40
Alignment explanation
Indices: 83095977--83096128 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
83095967 AAATTGAATG
* * * * *
83095977 ATATCCGGGCTAAGCCCCAAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
83096017 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
83096057 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
83096097 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
83096129 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 87 0.95
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:83096142 original size:40 final size:40
Alignment explanation
Indices: 83096015--83096144 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
83096005 ATGCTGGAAA
* * *
83096015 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
83096055 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
83096095 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
83096135 TTATATCCGG
1 TTATATCCGG
83096145 TTATATTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:83104008 original size:38 final size:39
Alignment explanation
Indices: 83103957--83104065 Score: 141
Period size: 38 Copynumber: 2.8 Consensus size: 39
83103947 CTGGAAATTA
* *
83103957 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGT-GGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAGGC
**
83103995 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGT-AGGC
*
83104035 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
83104066 ACGTGGTTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
37 3 0.05
38 29 0.47
40 28 0.45
41 2 0.03
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAGGC
Found at i:83104079 original size:40 final size:40
Alignment explanation
Indices: 83103954--83104081 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
83103944 ATGCTGGAAA
* * *
83103954 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
83103994 --CTATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
83104032 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
83104072 TTATATCCGG
1 TTATATCCGG
83104082 TTATATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
38 31 0.42
39 1 0.01
40 42 0.57
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:83110106 original size:80 final size:80
Alignment explanation
Indices: 83110022--83110170 Score: 192
Period size: 80 Copynumber: 1.9 Consensus size: 80
83110012 TATGGTAACC
* * * *
83110022 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
83110086 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * *
83110102 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
83110167 CCGG
66 CCGG
83110171 TATAATTTCC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.02
80 57 0.98
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:83110112 original size:40 final size:39
Alignment explanation
Indices: 83110063--83110170 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 39
83110053 ATCACGATTT
** *
83110063 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* *
83110103 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
*
83110143 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
83110171 TATAATTTCC
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 2 0.03
40 58 0.97
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:83113422 original size:27 final size:27
Alignment explanation
Indices: 83113392--83113663 Score: 231
Period size: 27 Copynumber: 10.3 Consensus size: 27
83113382 TTAGTTTACC
83113392 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
83113419 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
83113446 AAATTACC-AAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** *
83113472 AAATTACTAAAATACCATTTGTTATG--
1 AAATTACCAAAATACCCCTGGTT-TGTA
83113498 AAATTACC--AATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
83113523 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
83113550 AAATTACCAAAATACCCCTGATTTG--
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
83113575 AAATTACTGAAATA-CCCTCGAG-CTGTA
1 AAATTACCAAAATACCCCT-G-GTTTGTA
*** **
83113602 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* * *
83113629 AAATTACCAAACTACCCCTGATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
83113656 GAATTACC
1 AAATTACC
83113664 GTTTTACCCT
Statistics
Matches: 198, Mismatches: 35, Indels: 24
0.77 0.14 0.09
Matches are distributed among these distances:
23 2 0.01
24 14 0.07
25 22 0.11
26 28 0.14
27 126 0.64
28 6 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:83113602 original size:52 final size:51
Alignment explanation
Indices: 83113392--83113607 Score: 224
Period size: 52 Copynumber: 4.1 Consensus size: 51
83113382 TTAGTTTACC
*
83113392 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTAGTT-TACA
1 AAATTACC-AAATACCCCTGGTTTG-AAAATTACTAAAATACCCTTAGTTGT--A
* * * *
83113446 AAATTACCAAATACCCCTGGTTTGTAAAATTACTAAAATACCATTTGTTATG
1 AAATTACCAAATACCCCTGGTTTG-AAAATTACTAAAATACCCTTAGTTGTA
*
83113498 AAATTACC-AATACCCCTGGTTTGTAAAATTA-TCAAAATACCCCTAGTTTGTA
1 AAATTACCAAATACCCCTGGTTTG-AAAATTACT-AAAATACCCTTAG-TTGTA
* * * *
83113550 AAATTACCAAAATACCCCTGATTTG-AAATTACTGAAATACCCTCGAGCTGTA
1 AAATTACC-AAATACCCCTGGTTTGAAAATTACTAAAATACCCT-TAGTTGTA
83113602 AAATTA
1 AAATTA
83113608 TTGAAATACC
Statistics
Matches: 141, Mismatches: 14, Indels: 16
0.82 0.08 0.09
Matches are distributed among these distances:
50 1 0.01
51 33 0.23
52 43 0.30
53 41 0.29
54 23 0.16
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (51 bp):
AAATTACCAAATACCCCTGGTTTGAAAATTACTAAAATACCCTTAGTTGTA
Found at i:83113606 original size:104 final size:104
Alignment explanation
Indices: 83113392--83113647 Score: 284
Period size: 104 Copynumber: 2.4 Consensus size: 104
83113382 TTAGTTTACC
*
83113392 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTAGTTTACAAAATTACCAAA
1 AAATTACC-AAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACCAAA
* ** * *
83113457 TACCCCTGGTTTGTAAAATTACTAAAATACCATTTGTTATG
65 TACCCCTGATTTG-AAAATTACTAAAATACCATGAGCTATA
* **
83113498 AAATTACC-AATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 AAATTACCAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACC-AAA
* * *
83113562 TACCCCTGATTTG-AAATTACTGAAATACCCTCGAGCTGTA
65 TACCCCTGATTTGAAAATTACTAAAATACCAT-GAGCTATA
** ** *
83113602 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAACTACCCCT
1 AAATTA-CCAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCCT
83113648 GATTTATAGA
Statistics
Matches: 127, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
103 16 0.13
104 57 0.45
105 19 0.15
106 35 0.28
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (104 bp):
AAATTACCAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAT
ACCCCTGATTTGAAAATTACTAAAATACCATGAGCTATA
Found at i:83113698 original size:27 final size:27
Alignment explanation
Indices: 83113392--83113702 Score: 106
Period size: 27 Copynumber: 11.7 Consensus size: 27
83113382 TTAGTTTACC
* * * * *
83113392 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTATCGAAATACCCTTGATTTATA
* * *
83113419 AAATTACCAAAATACCCTT-AGTTTACA
1 AAATTATCGAAATACCCTTGA-TTTATA
* * * *
83113446 AAATTA-CCAAATACCCCTGGTTTGTA
1 AAATTATCGAAATACCCTTGATTTATA
* * *
83113472 AAATTA-CTAAAATACCATT--TGTTATG
1 AAATTATC-GAAATACCCTTGAT-TTATA
* * * *
83113498 AAATTA-C-CAATACCCCTGGTTTGTA
1 AAATTATCGAAATACCCTTGATTTATA
* * *
83113523 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTATCGAAATACCCTTGA-TTTATA
* * * *
83113550 AAATTACCAAAATACCCCTGA-TT-TG
1 AAATTATCGAAATACCCTTGATTTATA
* ** *
83113575 AAATTA-CTGAAATACCCTCGAGCTGTA
1 AAATTATC-GAAATACCCTTGATTTATA
* * * *
83113602 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTATCGAAATACCCTTGATTTATA
* *
83113629 AAATTA-CCAAACTACCCCTGATTTATA
1 AAATTATCGAAA-TACCCTTGATTTATA
* * *** *
83113656 GAATTACCGTTTTACCCTTGATTTACA
1 AAATTATCGAAATACCCTTGATTTATA
83113683 AAATTATCGAAATACCCTTG
1 AAATTATCGAAATACCCTTG
83113703 TAGGTAGAAA
Statistics
Matches: 219, Mismatches: 49, Indels: 32
0.73 0.16 0.11
Matches are distributed among these distances:
24 8 0.04
25 27 0.12
26 39 0.18
27 143 0.65
28 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTATCGAAATACCCTTGATTTATA
Found at i:83113713 original size:27 final size:28
Alignment explanation
Indices: 83113683--83113930 Score: 279
Period size: 27 Copynumber: 9.3 Consensus size: 28
83113673 TTGATTTACA
*
83113683 AAATTATCGAAATACCCTTGTA-GGTAG
1 AAATTACCGAAATACCCTTGTAGGGTAG
83113710 AAA-TACCGAAATACCCTTGTAGGGTAG
1 AAATTACCGAAATACCCTTGTAGGGTAG
* *
83113737 AAA-TACCGAAATACCCCTATAGGGTAG
1 AAATTACCGAAATACCCTTGTAGGGTAG
*
83113764 AAA-TACCGAAATACCCCTGTAGGGTAG
1 AAATTACCGAAATACCCTTGTAGGGTAG
**
83113791 -AATTACTAAAATACCCTT-TAGGGTAG
1 AAATTACCGAAATACCCTTGTAGGGTAG
*
83113817 -AATTACCGGAATACCCTTGTAGGGTAG
1 AAATTACCGAAATACCCTTGTAGGGTAG
* *
83113844 AAA-TATCGAAATACCCCTGTAGGGTAG
1 AAATTACCGAAATACCCTTGTAGGGTAG
** * *
83113871 -AATTACTAAAATACCCCTATAGGGTAG
1 AAATTACCGAAATACCCTTGTAGGGTAG
*
83113898 -AATTACCGAGATACCCTTGT-GGGT--
1 AAATTACCGAAATACCCTTGTAGGGTAG
83113922 AAATTACCG
1 AAATTACCG
83113931 TTTTACCCTA
Statistics
Matches: 193, Mismatches: 22, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
25 8 0.04
26 48 0.25
27 135 0.70
28 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (28 bp):
AAATTACCGAAATACCCTTGTAGGGTAG
Found at i:83113912 original size:107 final size:108
Alignment explanation
Indices: 83113684--83113930 Score: 358
Period size: 107 Copynumber: 2.3 Consensus size: 108
83113674 TGATTTACAA
* *
83113684 AATTATCGAAATACCCTTGTA-GGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
* *
83113748 TACCCCTATAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
66 TACCCCTATAGGGTAGAAATACCAAAATACCCCTATAGGGTAG
** * *
83113791 AATTACTAAAATACCCTT-TAGGGTAGAATTACCGGAATACCCTTGTAGGGTAGAAATATCGAAA
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
* * *
83113855 TACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAG
66 TACCCCTATAGGGTAGAAATACCAAAATACCCCTATAGGGTAG
*
83113898 AATTACCGAGATACCCTTGT-GGGTA-AATTACCG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACCG
83113931 TTTTACCCTA
Statistics
Matches: 124, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
106 10 0.08
107 113 0.91
108 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (108 bp):
AATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
TACCCCTATAGGGTAGAAATACCAAAATACCCCTATAGGGTAG
Found at i:83113922 original size:80 final size:81
Alignment explanation
Indices: 83113687--83113922 Score: 327
Period size: 80 Copynumber: 3.0 Consensus size: 81
83113677 TTTACAAAAT
* * ** * * * *
83113687 TATCGAAATACCCTTGTA-GGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCGAAATAC
1 TATCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAGATAC
* *
83113751 CCCTATAGGGTAGAAA
66 CCTTGTAGGGTAGAAA
* *
83113767 TACCGAAATACCCCTGTAGGGTAGAATTACTAAAATA-CCCTTTAGGGTAGAATTACCG-GAATA
1 TATCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAG-ATA
83113830 CCCTTGTAGGGTAGAAA
65 CCCTTGTAGGGTAGAAA
83113847 TATCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAGATAC
1 TATCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAGATAC
83113912 CCTTGT-GGGTA
66 CCTTGTAGGGTA
83113923 AATTACCGTT
Statistics
Matches: 139, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
80 93 0.67
81 45 0.32
82 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (81 bp):
TATCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAGATAC
CCTTGTAGGGTAGAAA
Done.