Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 27 of 410
Found at i:6856896 original size:20 final size:20
Alignment explanation
Indices: 6856871--6856929 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
6856861 TAAATATGGT
6856871 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
6856891 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
6856911 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
6856930 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:6856911 original size:11 final size:11
Alignment explanation
Indices: 6856875--6856929 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
6856865 TATGGTATGT
6856875 ATGATATGCAC
1 ATGATATGCAC
* *
6856886 ATGAAATG--T
1 ATGATATGCAC
6856895 ATGATATGCAC
1 ATGATATGCAC
*
6856906 ATGATATG--T
1 ATGATATGCAC
6856915 ATGATATGCAC
1 ATGATATGCAC
6856926 ATGA
1 ATGA
6856930 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:6857007 original size:24 final size:24
Alignment explanation
Indices: 6856980--6857121 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
6856970 GAGGAAGTGA
6856980 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
6857004 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
6857028 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
6857051 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
6857074 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
6857098 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
6857122 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
22 22 0.20
24 77 0.70
25 11 0.10
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:6857072 original size:46 final size:47
Alignment explanation
Indices: 6856980--6857121 Score: 198
Period size: 46 Copynumber: 3.0 Consensus size: 47
6856970 GAGGAAGTGA
6856980 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
6857028 AAAAGGGCTTATGCCCCAGTTAT-AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
6857074 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
6857122 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
46 42 0.49
47 1 0.01
48 32 0.37
49 11 0.13
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:6857094 original size:70 final size:71
Alignment explanation
Indices: 6856981--6857122 Score: 216
Period size: 70 Copynumber: 2.0 Consensus size: 71
6856971 AGGAAGTGAA
*
6856981 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-C
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCTC
6857044 CAGTTAT
65 CAGTTAT
** * *
6857051 AAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTCC
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTCC
6857116 AGTTAT
66 AGTTAT
6857122 A
1 A
6857123 TGATAAAGCA
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
70 53 0.82
71 12 0.18
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (71 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTCC
AGTTAT
Found at i:6857348 original size:31 final size:31
Alignment explanation
Indices: 6857313--6857376 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
6857303 CGTTTACAGT
6857313 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
6857344 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
6857375 AA
1 AA
6857377 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:6864916 original size:25 final size:25
Alignment explanation
Indices: 6864887--6864934 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
6864877 TTATAATATG
* * *
6864887 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
6864912 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
6864935 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:6865003 original size:20 final size:20
Alignment explanation
Indices: 6864978--6865036 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
6864968 TAAATATGGT
6864978 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
6864998 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
6865018 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
6865037 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:6865018 original size:11 final size:11
Alignment explanation
Indices: 6864982--6865036 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
6864972 TATGGTATGT
6864982 ATGATATGCAC
1 ATGATATGCAC
* *
6864993 ATGAAATG--T
1 ATGATATGCAC
6865002 ATGATATGCAC
1 ATGATATGCAC
*
6865013 ATGATATG--T
1 ATGATATGCAC
6865022 ATGATATGCAC
1 ATGATATGCAC
6865033 ATGA
1 ATGA
6865037 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:6865131 original size:24 final size:24
Alignment explanation
Indices: 6865091--6865231 Score: 191
Period size: 23 Copynumber: 6.0 Consensus size: 24
6865081 GAAAAAGTGA
6865091 AAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
6865114 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
6865138 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
6865161 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
6865185 GAAAGGGCTTTTG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
6865208 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
6865232 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
23 52 0.48
24 48 0.44
25 8 0.07
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:6865165 original size:47 final size:46
Alignment explanation
Indices: 6865091--6865231 Score: 194
Period size: 47 Copynumber: 3.0 Consensus size: 46
6865081 GAAAAAGTGA
6865091 AAAAGGGCTTATGCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
6865138 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATG-CCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
6865185 GAAAGGGCTTTTGCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
6865232 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
46 8 0.09
47 58 0.67
48 20 0.23
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:6865457 original size:31 final size:31
Alignment explanation
Indices: 6865422--6865485 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
6865412 CGTTTACAGT
6865422 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
6865453 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
6865484 AA
1 AA
6865486 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:6867695 original size:2 final size:2
Alignment explanation
Indices: 6867688--6867733 Score: 67
Period size: 2 Copynumber: 23.5 Consensus size: 2
6867678 ACTGTTAAAC
* *
6867688 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT -T AT GT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6867729 AT AT A
1 AT AT A
6867734 GTTATTTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6868154 original size:12 final size:12
Alignment explanation
Indices: 6868137--6868162 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
6868127 AAAATAGGGC
6868137 TTTAGCGGCGTT
1 TTTAGCGGCGTT
6868149 TTTAGCGGCGTT
1 TTTAGCGGCGTT
6868161 TT
1 TT
6868163 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:6868261 original size:41 final size:40
Alignment explanation
Indices: 6868196--6868435 Score: 288
Period size: 41 Copynumber: 5.9 Consensus size: 40
6868186 TAAAACATAT
** * *
6868196 AGCAATAGCGGCG-TTTTACCAAAAACGCCACTAAAAATAG
1 AGCAATAGCGGCGCTTTT-GGAAAAACGCCGCTAAAAACAG
*
6868236 AGCAATAGCGGCG-TTTTAGTAAAAAACGCCGCTAAAAACAG
1 AGCAATAGCGGCGCTTTT-G-GAAAAACGCCGCTAAAAACAG
*
6868277 AG-AATTAGCGGCGCTTTTGGCAAAACGCCGCTAAAAACCAG
1 AGCAA-TAGCGGCGCTTTTGGAAAAACGCCGCTAAAAA-CAG
* *
6868318 AGCATTAGCGGCGCTTGTGGAAAAACGCCGCTAAAAATCAG
1 AGCAATAGCGGCGCTTTTGGAAAAACGCCGCTAAAAA-CAG
* *
6868359 AGCATTAGCGGCGCTTTTGGCAAAACGCCGCTAAAAACCAG
1 AGCAATAGCGGCGCTTTTGGAAAAACGCCGCTAAAAA-CAG
* *
6868400 AGCATTAGCGGCGCTTTTGGCAAAACGCCGCTAAAA
1 AGCAATAGCGGCGCTTTTGGAAAAACGCCGCTAAAA
6868436 GTCATATAAC
Statistics
Matches: 182, Mismatches: 13, Indels: 9
0.89 0.06 0.04
Matches are distributed among these distances:
40 36 0.20
41 141 0.77
42 5 0.03
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.17
Consensus pattern (40 bp):
AGCAATAGCGGCGCTTTTGGAAAAACGCCGCTAAAAACAG
Found at i:6868329 original size:82 final size:82
Alignment explanation
Indices: 6868217--6868435 Score: 320
Period size: 82 Copynumber: 2.7 Consensus size: 82
6868207 CGTTTTACCA
* * * *
6868217 AAAACGCCACTAAAAA-TAGAGCAATAGCGGCGTTTTAGTAAAAAACGCCGCTAAAAA-CAGAGA
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGTTTT-GTGAAAAACGCCGCTAAAAATCAGAGA
6868280 ATTAGCGGCGCTTTTGGC
65 ATTAGCGGCGCTTTTGGC
* *
6868298 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCG-CTTGTGGAAAAACGCCGCTAAAAATCAGAGC
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGTTTTGT-GAAAAACGCCGCTAAAAATCAGAGA
6868362 ATTAGCGGCGCTTTTGGC
65 ATTAGCGGCGCTTTTGGC
*
6868380 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTG-GCAAAACGCCGCTAAAA
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCG-TTTTGTGAAAAACGCCGCTAAAA
6868436 GTCATATAAC
Statistics
Matches: 125, Mismatches: 8, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
80 2 0.02
81 34 0.27
82 86 0.69
84 3 0.02
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (82 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGTTTTGTGAAAAACGCCGCTAAAAATCAGAGAA
TTAGCGGCGCTTTTGGC
Found at i:6868620 original size:21 final size:21
Alignment explanation
Indices: 6868596--6868676 Score: 81
Period size: 21 Copynumber: 3.7 Consensus size: 21
6868586 ATAGTTTATG
*
6868596 GTTTATGGTTTAAGATATATA
1 GTTTAGGGTTTAAGATATATA
* *
6868617 GTTTAGGGTTTAAGATTTTTGA
1 GTTTAGGGTTTAAGATATAT-A
* *
6868639 GTTAACTATGGTTTAAGATATATG
1 GTT---TAGGGTTTAAGATATATA
6868663 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
6868677 GTTTAGGAGT
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
21 27 0.56
22 4 0.08
24 3 0.06
25 14 0.29
ACGTcount: A:0.28, C:0.01, G:0.25, T:0.46
Consensus pattern (21 bp):
GTTTAGGGTTTAAGATATATA
Found at i:6868667 original size:46 final size:46
Alignment explanation
Indices: 6868599--6868692 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
6868589 GTTTATGGTT
**
6868599 TATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTTTGAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTAGGAGTTAAC
* *
6868645 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTAGGAGTTAAC
6868691 TA
1 TA
6868693 GTATTTGAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.44
Consensus pattern (46 bp):
TATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTAGGAGTTAAC
Found at i:6869325 original size:23 final size:22
Alignment explanation
Indices: 6869266--6869326 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 22
6869256 ATATCCTATG
*
6869266 TATGTAATTGTATTTAAATTTT
1 TATGTAATTGTATTAAAATTTT
*
6869288 TAATTTATATT-TATTAAAATTTT
1 T-ATGTA-ATTGTATTAAAATTTT
6869311 ATATGTAATTGTATTA
1 -TATGTAATTGTATTA
6869327 GCATTTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
22 4 0.12
23 24 0.75
24 4 0.12
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (22 bp):
TATGTAATTGTATTAAAATTTT
Found at i:6872205 original size:12 final size:12
Alignment explanation
Indices: 6872188--6872212 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6872178 CTGCTACAAA
6872188 TTCATTAACTTC
1 TTCATTAACTTC
6872200 TTCATTAACTTC
1 TTCATTAACTTC
6872212 T
1 T
6872213 CTTCTTGACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (12 bp):
TTCATTAACTTC
Found at i:6874709 original size:43 final size:43
Alignment explanation
Indices: 6874641--6874786 Score: 220
Period size: 43 Copynumber: 3.4 Consensus size: 43
6874631 TTAATTTTTA
* *
6874641 TGACCTTTAGCGGCGTTTTTTGGAAAAGCGCCGCTAAAGGTCC
1 TGACCTTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCC
* * *
6874684 TGACCTTTGGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCC
1 TGACCTTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCC
* *
6874727 TGACCTTTGGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCA
1 TGACCTTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCC
*
6874770 GGACCTTTAGCGGCGTT
1 TGACCTTTAGCGGCGTT
6874787 GTTTTCAAAT
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 94 1.00
ACGTcount: A:0.20, C:0.22, G:0.32, T:0.26
Consensus pattern (43 bp):
TGACCTTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCC
Found at i:6874894 original size:31 final size:32
Alignment explanation
Indices: 6874835--6874895 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
6874825 TATAGTGACA
*
6874835 TTTTTGTGGCGCTTACAAAAACGCCGCTAATAG
1 TTTTAGTGGCGCTTA-AAAAACGCCGCTAATAG
*
6874868 TTTTAGTGGCGCTT-AAAAGCGCCGCTAA
1 TTTTAGTGGCGCTTAAAAAACGCCGCTAA
6874896 AGGCCTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 13 0.50
33 13 0.50
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (32 bp):
TTTTAGTGGCGCTTAAAAAACGCCGCTAATAG
Found at i:6876985 original size:27 final size:26
Alignment explanation
Indices: 6876948--6877062 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
6876938 AGCATGGCTG
* *
6876948 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
6876974 CCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGA-ACAGATAA-TGTGGCAGAGCCA
6877002 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
6877029 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
6877056 CCAGAAC
1 CCAGAAC
6877063 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:6877007 original size:54 final size:54
Alignment explanation
Indices: 6876948--6877062 Score: 178
Period size: 54 Copynumber: 2.1 Consensus size: 54
6876938 AGCATGGCTG
*
6876948 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATTGTGGCAGAGCCA
* * *
6877002 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAGCCA
6877056 CCAGAAC
1 CCAGAAC
6877063 GCTTCCTCCA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
54 38 0.68
55 18 0.32
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAGCCA
Found at i:6877226 original size:28 final size:25
Alignment explanation
Indices: 6877168--6877237 Score: 77
Period size: 25 Copynumber: 2.7 Consensus size: 25
6877158 TTAACCCTAC
* *
6877168 GGGTATAACGGTAATTTTGCACTAG
1 GGGTATAACAGTAATTTTCCACTAG
6877193 GGGTATAACAGTAATTTTCCATACATAG
1 GGGTATAACAGTAATTTTCC--AC-TAG
* *
6877221 GGGTATTATAGTAATTT
1 GGGTATAACAGTAATTT
6877238 AGCTACTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
25 18 0.47
27 2 0.05
28 18 0.47
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (25 bp):
GGGTATAACAGTAATTTTCCACTAG
Found at i:6878711 original size:26 final size:26
Alignment explanation
Indices: 6878673--6878782 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
6878663 CATGAAATTC
*
6878673 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
6878699 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
6878725 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
*
6878751 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
6878777 TTATCA
1 TTATCA
6878783 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:6882746 original size:27 final size:26
Alignment explanation
Indices: 6882709--6882823 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
6882699 AGCATCGCTG
* *
6882709 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
6882735 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
6882763 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
6882790 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
6882817 CCAGAAC
1 CCAGAAC
6882824 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:6882768 original size:54 final size:54
Alignment explanation
Indices: 6882709--6882823 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
6882699 AGCATCGCTG
*
6882709 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
6882763 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
6882817 CCAGAAC
1 CCAGAAC
6882824 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:6884479 original size:26 final size:26
Alignment explanation
Indices: 6884441--6884524 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
6884431 CATGAAATTC
* *
6884441 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
6884467 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
6884493 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
6884519 TTATCA
1 TTATCA
6884525 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:6885530 original size:23 final size:23
Alignment explanation
Indices: 6885473--6885533 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 23
6885463 ATACAATTAG
* *
6885473 ACATATAAATATATACAAAACAA
1 ACATATATATATATAAAAAACAA
** *
6885496 ATGTA-ATAATATATAAAAAATAA
1 ACATATAT-ATATATAAAAAACAA
6885519 ACATATATATATATA
1 ACATATATATATATA
6885534 TATATATCAA
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
22 1 0.03
23 26 0.90
24 2 0.07
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.30
Consensus pattern (23 bp):
ACATATATATATATAAAAAACAA
Found at i:6885861 original size:5 final size:5
Alignment explanation
Indices: 6885853--6885930 Score: 52
Period size: 5 Copynumber: 15.0 Consensus size: 5
6885843 ACTATATAGA
* * * * *
6885853 ATAAT ATAAT ATCAT ATAAT ATAAT AAAAAT TTAAT -TACAT ATAAT TTAAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT ATAAT ATA-AT ATAAT ATAAT
6885904 AGTAA- ATAAT AATAGAT ATAAT ATAAT
1 A-TAAT ATAAT -ATA-AT ATAAT ATAAT
6885931 GGACATTAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
4 5 0.09
5 36 0.62
6 15 0.26
7 2 0.03
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.37
Consensus pattern (5 bp):
ATAAT
Found at i:6885862 original size:26 final size:25
Alignment explanation
Indices: 6885815--6885930 Score: 85
Period size: 27 Copynumber: 4.4 Consensus size: 25
6885805 AGAAAATATT
6885815 TAAT-TAATAAAATATTAATAATACATA
1 TAATATAATAAAA-A-T-ATAATACATA
*
6885842 TACTAT-ATAGAATAATATAATATCATA
1 TAATATAATA-AA-AATATAATA-CATA
*
6885869 TAATATAATAAAAATTTAATTACATA
1 TAATATAATAAAAATATAA-TACATA
* *
6885895 TAATTTAA-AAGTAAATAATAATAGATA
1 TAATATAATAA--AAAT-ATAATACATA
6885922 TAATATAAT
1 TAATATAAT
6885931 GGACATTAAT
Statistics
Matches: 72, Mismatches: 7, Indels: 19
0.73 0.07 0.19
Matches are distributed among these distances:
25 2 0.03
26 23 0.32
27 36 0.50
28 10 0.14
29 1 0.01
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (25 bp):
TAATATAATAAAAATATAATACATA
Found at i:6888392 original size:206 final size:206
Alignment explanation
Indices: 6887824--6888496 Score: 1100
Period size: 206 Copynumber: 3.3 Consensus size: 206
6887814 TAAATCTGCT
* *
6887824 TCTTCGATTTGTTCCTTATAAACACAAGTATGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
1 TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
* ** * * * *
6887889 TCTGGAGGTTAGATCTGCTATGTATCTGCTCTTCGTCGAA-ATGGAGATGCCAGACTTTGATTTG
66 TCTGAAGGCCAGATCTACTATGTATCTGCTCTCCGTCGAATATGGAGACGCCAAACTTTGATTTG
* *
6887953 TTCTCTGACAATACAGAGATGCCAAAT-ATCTTAGATTTGCTTCATCGCAAACACGTGGAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCA
6888017 AATCAGCTATG
196 AATCAGCTATG
* *
6888028 TCTTTGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTCA-TATATACA
1 TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
*
6888092 TCTGAAGGCCAGATCTACTATGTATCTGCTCTCCGTCGAATATGGAGACGCCAAACTTCGATTTG
66 TCTGAAGGCCAGATCTACTATGTATCTGCTCTCCGTCGAATATGGAGACGCCAAACTTTGATTTG
* *
6888157 TTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTATCGTAAACACGTGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCA
6888222 AATCAGCTATG
196 AATCAGCTATG
* * * *
6888233 TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTTAGTAAAAACA
1 TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
* * *
6888298 TCTGAAGACCAGATCTACTATGTATCTGCTCTCCATTGAATATGGAGACGCCAAACTTTGATTTG
66 TCTGAAGGCCAGATCTACTATGTATCTGCTCTCCGTCGAATATGGAGACGCCAAACTTTGATTTG
*
6888363 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCA
6888428 AATCAGCTATG
196 AATCAGCTATG
6888439 TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTTGCTTCAG
1 TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATC-TGCTTCAG
6888497 CCAGATCTAC
Statistics
Matches: 433, Mismatches: 32, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
203 42 0.10
204 100 0.23
205 97 0.22
206 187 0.43
207 7 0.02
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (206 bp):
TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
TCTGAAGGCCAGATCTACTATGTATCTGCTCTCCGTCGAATATGGAGACGCCAAACTTTGATTTG
TTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCA
AATCAGCTATG
Found at i:6900336 original size:3 final size:3
Alignment explanation
Indices: 6900328--6900368 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
6900318 TAGGAAGCAT
*
6900328 ATA ATA AT- ATA ATA ATA TTA ATA ACTA A-A ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA
6900369 CATACATTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
2 4 0.12
3 26 0.79
4 3 0.09
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:6906598 original size:28 final size:27
Alignment explanation
Indices: 6906526--6906598 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 27
6906516 TATATTTAAG
* *
6906526 TTAAATAATATATTAAA-AATTTTTATA
1 TTAAATAATA-ATTAAATAATTATTACA
*
6906553 TTAAATAATAATTAAAATCATTATTACA
1 TTAAATAATAATT-AAATAATTATTACA
6906581 TTAAGATAATAATTAAAT
1 TTAA-ATAATAATTAAAT
6906599 GAGGTAAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
26 3 0.08
27 13 0.32
28 15 0.38
29 9 0.22
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.42
Consensus pattern (27 bp):
TTAAATAATAATTAAATAATTATTACA
Found at i:6908875 original size:18 final size:19
Alignment explanation
Indices: 6908849--6908888 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
6908839 GTTAAAAATG
6908849 TTTTAATTAT-TATTTGAA
1 TTTTAATTATATATTTGAA
*
6908867 TTTTTATTATAATATTTGAA
1 TTTTAATTAT-ATATTTGAA
6908887 TT
1 TT
6908889 GATAAGTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (19 bp):
TTTTAATTATATATTTGAA
Found at i:6911427 original size:25 final size:25
Alignment explanation
Indices: 6911370--6911456 Score: 86
Period size: 25 Copynumber: 3.3 Consensus size: 25
6911360 TTAAGAACAC
6911370 TTTATTTTTATTAATTTAGCTATTTTTAT
1 TTTATTTTTA-TAATTT---TATTTTTAT
6911399 TTTATTTTTATAATTTTATTTTTAGT
1 TTTATTTTTATAATTTTATTTTTA-T
* * *
6911425 TTAATTTTTA-CATTTTAATTTTTCT
1 TTTATTTTTATAATTTT-ATTTTTAT
6911450 TTTATTT
1 TTTATTT
6911457 GTTTCTGGTA
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
25 20 0.38
26 16 0.31
28 6 0.12
29 10 0.19
ACGTcount: A:0.23, C:0.03, G:0.02, T:0.71
Consensus pattern (25 bp):
TTTATTTTTATAATTTTATTTTTAT
Found at i:6911453 original size:26 final size:26
Alignment explanation
Indices: 6911390--6911453 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
6911380 TTAATTTAGC
6911390 TATTTTTATTTT-ATTTTTATAATTT
1 TATTTTTATTTTAATTTTTATAATTT
* *
6911415 TATTTTTAGTTTAATTTTTA-CATTT
1 TATTTTTATTTTAATTTTTATAATTT
*
6911440 TAATTTTTCTTTTA
1 T-ATTTTTATTTTA
6911454 TTTGTTTCTG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
25 16 0.48
26 17 0.52
ACGTcount: A:0.23, C:0.03, G:0.02, T:0.72
Consensus pattern (26 bp):
TATTTTTATTTTAATTTTTATAATTT
Found at i:6916106 original size:37 final size:36
Alignment explanation
Indices: 6916056--6916142 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
6916046 TACGAAGTCT
6916056 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
6916092 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
6916129 TCACCCGGAACATA
1 T-ACCCGG-ACATA
6916143 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:6916282 original size:49 final size:49
Alignment explanation
Indices: 6916211--6916581 Score: 555
Period size: 49 Copynumber: 7.4 Consensus size: 49
6916201 TTTACCACAT
* *
6916211 ATATATATACACTTTCATATTCATCACGTTGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* * *
6916260 ATATATATACATTTTCACATTCATCACATCGGTCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
6916309 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
6916358 ATATATATATA-TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
6916406 ATATATATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACAC
1 ------ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTAT--CAC
6916463 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
6916512 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACAC
1 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTAT--CAC
*
6916563 ATATATATACATTTTCACA
1 ATATATATACACTTTCACA
6916582 CTTGCACATT
Statistics
Matches: 300, Mismatches: 11, Indels: 20
0.91 0.03 0.06
Matches are distributed among these distances:
48 37 0.12
49 149 0.50
51 68 0.23
54 10 0.03
55 33 0.11
57 3 0.01
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.35
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:6918102 original size:2 final size:2
Alignment explanation
Indices: 6918095--6918122 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6918085 TTCATTATTA
6918095 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6918123 CTAAACACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6919424 original size:26 final size:26
Alignment explanation
Indices: 6919395--6919502 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
6919385 TGGTACAAAT
6919395 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
6919421 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
6919447 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
6919473 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
6919499 TGAT
1 TGAT
6919503 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:6922960 original size:40 final size:40
Alignment explanation
Indices: 6922911--6923153 Score: 159
Period size: 41 Copynumber: 6.0 Consensus size: 40
6922901 TTTTAAAATT
* *
6922911 CAGAGCAACAGCGGCGTTTTAAAAAAAACGCCGCTAAAAA
1 CAGAGCAACAGCGGCGCTTTATAAAAAACGCCGCTAAAAA
* *
6922951 CAGAGCAACAGCGACGTTTTAGTAAAAAACGCCGCT-AAAA
1 CAGAGCAACAGCGGCGCTTTA-TAAAAAACGCCGCTAAAAA
** * ** *
6922991 CAGAGCATTAGCGGCGCTTTCTGTAAAACGCCGCTAAAAGC
1 CAGAGCAACAGCGGCGCTTTATAAAAAACGCCGCTAAAA-A
** **** *
6923032 CAGAGCATTAGCGGCGCTTTGGGTAAAACGCCGCTAAAAGC
1 CAGAGCAACAGCGGCGCTTTATAAAAAACGCCGCTAAAA-A
* ** * **** *
6923073 CGGAGCATTAGCGACGCTTTGGGTAAAACGCCGCTAAAAGC
1 CAGAGCAACAGCGGCGCTTTATAAAAAACGCCGCTAAAA-A
**
6923114 CAGAGCATTAGCGGCGCTTTCAGT--AAAACGCCGCTAAAAA
1 CAGAGCAACAGCGGCGCTTT-A-TAAAAAACGCCGCTAAAAA
6923154 TCTCATAACC
Statistics
Matches: 179, Mismatches: 19, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 12 0.07
40 43 0.24
41 124 0.69
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.16
Consensus pattern (40 bp):
CAGAGCAACAGCGGCGCTTTATAAAAAACGCCGCTAAAAA
Found at i:6922978 original size:41 final size:39
Alignment explanation
Indices: 6922911--6922997 Score: 138
Period size: 40 Copynumber: 2.2 Consensus size: 39
6922901 TTTTAAAATT
*
6922911 CAGAGCAACAGCGGCGTTTTAAAAAAAACGCCGCTAAAAA
1 CAGAGCAACAGCGACGTTTTAAAAAAAACGCCGCT-AAAA
*
6922951 CAGAGCAACAGCGACGTTTTAGTAAAAAACGCCGCTAAAA
1 CAGAGCAACAGCGACGTTTTA-AAAAAAACGCCGCTAAAA
6922991 CAGAGCA
1 CAGAGCA
6922998 TTAGCGGCGC
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
40 31 0.70
41 13 0.30
ACGTcount: A:0.44, C:0.23, G:0.21, T:0.13
Consensus pattern (39 bp):
CAGAGCAACAGCGACGTTTTAAAAAAAACGCCGCTAAAA
Found at i:6923017 original size:41 final size:40
Alignment explanation
Indices: 6922935--6923152 Score: 269
Period size: 41 Copynumber: 5.4 Consensus size: 40
6922925 CGTTTTAAAA
* ** * **
6922935 AAAACGCCGCTAAAAACAGAGCAACAGCGACG-TTTTAGT
1 AAAACGCCGCTAAAACCAGAGCATTAGCGGCGCTTTCGGT
*
6922974 AAAAAACGCCGCTAAAA-CAGAGCATTAGCGGCGCTTTCTGT
1 --AAAACGCCGCTAAAACCAGAGCATTAGCGGCGCTTTCGGT
*
6923015 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTGGGT
1 AAAACGCCGCTAAAA-CCAGAGCATTAGCGGCGCTTTCGGT
* * *
6923056 AAAACGCCGCTAAAAGCCGGAGCATTAGCGACGCTTTGGGT
1 AAAACGCCGCTAAAA-CCAGAGCATTAGCGGCGCTTTCGGT
*
6923097 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCAGT
1 AAAACGCCGCTAAAA-CCAGAGCATTAGCGGCGCTTTCGGT
6923138 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
6923153 ATCTCATAAC
Statistics
Matches: 161, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
39 15 0.09
40 13 0.08
41 133 0.83
ACGTcount: A:0.34, C:0.25, G:0.24, T:0.17
Consensus pattern (40 bp):
AAAACGCCGCTAAAACCAGAGCATTAGCGGCGCTTTCGGT
Found at i:6924185 original size:15 final size:15
Alignment explanation
Indices: 6924165--6924196 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
6924155 TTTAATTTAG
*
6924165 AAGATAAATGTATAT
1 AAGATAAATATATAT
6924180 AAGATAAATATATAT
1 AAGATAAATATATAT
6924195 AA
1 AA
6924197 AATATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:6924235 original size:24 final size:24
Alignment explanation
Indices: 6924168--6924235 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
6924158 AATTTAGAAG
* *
6924168 ATAAATGTATATAAGATAAATATAT
1 ATAAATATATATATGA-AAATATAT
* *
6924193 ATAAA-ATATTATTTTAAAATATAT
1 ATAAATATA-TATATGAAAATATAT
6924217 ATAAATATATATATGAAAA
1 ATAAATATATATATGAAAA
6924236 ATGGTTTCGT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
24 23 0.66
25 12 0.34
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (24 bp):
ATAAATATATATATGAAAATATAT
Found at i:6928498 original size:288 final size:289
Alignment explanation
Indices: 6928095--6928797 Score: 1385
Period size: 289 Copynumber: 2.4 Consensus size: 289
6928085 CCAACCTTGT
6928095 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAA-CTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
6928159 GCAAGATATAAT-GATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
6928223 AAAGACTTGAAAAAAG-TCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
6928287 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAAATACTATT
196 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAAATACTATT
6928352 TTTTATATTAATAATGTTTGATTTTAATA
261 TTTTATATTAATAATGTTTGATTTTAATA
6928381 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
6928446 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
6928511 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
6928576 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAAATACTATT
196 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAAATACTATT
6928641 TTTTATATTAATAATGTTTGATTTTAATA
261 TTTTATATTAATAATGTTTGATTTTAATA
6928670 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
6928735 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
6928798 TCCATTTTAT
Statistics
Matches: 414, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
286 39 0.09
287 37 0.09
288 68 0.16
289 270 0.65
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (289 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAAATACTATT
TTTTATATTAATAATGTTTGATTTTAATA
Found at i:6929051 original size:15 final size:15
Alignment explanation
Indices: 6929007--6929062 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
6928997 AACGACATGT
*
6929007 ATATTACTTAATTAAA
1 ATATTATTTAATT-AA
6929023 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
6929036 ATATTATTTAATTAA
1 ATATTATTTAATTAA
6929051 ATATTATTTAAT
1 ATATTATTTAAT
6929063 CCCGCTACTT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
12 3 0.09
13 7 0.20
14 2 0.06
15 16 0.46
16 4 0.11
17 3 0.09
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:6929204 original size:9 final size:9
Alignment explanation
Indices: 6929167--6929436 Score: 188
Period size: 9 Copynumber: 29.6 Consensus size: 9
6929157 TATTTGATAT
*
6929167 CATAATTTA
1 CATAACTTA
*
6929176 TATAACTTA
1 CATAACTTA
* *
6929185 CAAAACGTA
1 CATAACTTA
6929194 CATAACTTA
1 CATAACTTA
6929203 CATAACTTA
1 CATAACTTA
*
6929212 TATAACTTA
1 CATAACTTA
6929221 CATAACTTA
1 CATAACTTA
* *
6929230 TATAACATA
1 CATAACTTA
*
6929239 TATAACTTA
1 CATAACTTA
6929248 CATAACTTA
1 CATAACTTA
* *
6929257 TATAACAT-
1 CATAACTTA
6929265 CATAACTTA
1 CATAACTTA
*
6929274 TATAACTTA
1 CATAACTTA
*
6929283 TATAACTTA
1 CATAACTTA
* *
6929292 GATAA-ATA
1 CATAACTTA
*
6929300 TATAACTTA
1 CATAACTTA
6929309 CATAACTTA
1 CATAACTTA
6929318 CATAATACTTA
1 CAT-A-ACTTA
* *
6929329 AATATATTTTATA
1 CATA-A--CT-TA
*
6929342 TCATAATTTA
1 -CATAACTTA
6929352 CATAACTTA
1 CATAACTTA
6929361 CATAACTTA
1 CATAACTTA
*
6929370 TATAACTTA
1 CATAACTTA
* *
6929379 GATAA-ATA
1 CATAACTTA
* *
6929387 TATAATTTA
1 CATAACTTA
*
6929396 CATAA-ATA
1 CATAACTTA
* * *
6929404 TATATCATA
1 CATAACTTA
*
6929413 TCATAAATTA
1 -CATAACTTA
6929423 CATAACTTA
1 CATAACTTA
6929432 CATAA
1 CATAA
6929437 TACTTAAATA
Statistics
Matches: 209, Mismatches: 41, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
8 23 0.11
9 159 0.76
10 11 0.05
11 9 0.04
12 1 0.00
13 3 0.01
14 3 0.01
ACGTcount: A:0.47, C:0.14, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:6929279 original size:71 final size:71
Alignment explanation
Indices: 6929194--6929436 Score: 256
Period size: 71 Copynumber: 3.3 Consensus size: 71
6929184 ACAAAACGTA
*
6929194 CATAACTTACATAACTTATATAACTTACATAACTTATATAACATATATAACTTACATAACTTATA
1 CATAACTTACATAACTTACATAACTTACATAACTTATATAACATATATAACTTACATAACTTATA
*
6929259 TAACAT
66 TAATAT
* * * * * *
6929265 CATAACTTATATAACTTATATAACTTAGATAA-ATATATAACTTACATAACTTACATAATACTTA
1 CATAACTTACATAACTTACATAACTTACATAACTTATATAACATATATAACTTACAT-A-ACTT-
6929329 AATATATTTTATAT
63 -ATATA----ATAT
* * * * *
6929343 CATAATTTACATAACTTACATAACTTATATAACTTAGATAA-ATATATAATTTACATAAATATAT
1 CATAACTTACATAACTTACATAACTTACATAACTTATATAACATATATAACTTACATAACT-TAT
*
6929407 ATCATAT
65 ATAATAT
*
6929414 CATAAATTACATAACTTACATAA
1 CATAACTTACATAACTTACATAA
6929437 TACTTAAATA
Statistics
Matches: 144, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
70 21 0.15
71 57 0.40
72 4 0.03
74 5 0.03
75 4 0.03
76 2 0.01
77 2 0.01
78 43 0.30
79 6 0.04
ACGTcount: A:0.47, C:0.14, G:0.01, T:0.38
Consensus pattern (71 bp):
CATAACTTACATAACTTACATAACTTACATAACTTATATAACATATATAACTTACATAACTTATA
TAATAT
Found at i:6935111 original size:21 final size:21
Alignment explanation
Indices: 6935078--6935128 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
6935068 ACAACTTAGA
*
6935078 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
6935099 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
6935120 GCAGAGGCA
1 GCAGAGGCA
6935129 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:6935569 original size:43 final size:43
Alignment explanation
Indices: 6935522--6935945 Score: 724
Period size: 43 Copynumber: 9.8 Consensus size: 43
6935512 GTAAAAAAAG
* * * *
6935522 CGCCGCTAAAAGCCTTGACGTTTAGCAGCGCTTTACGCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
6935565 CGCCGCTAAAAACCTTGACCTTTAGCGGCG-TTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
6935607 CGCCGCTAAAAAGCCTTGACGTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCT-AAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
6935651 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
6935694 CGTCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCT-AAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
6935738 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
6935781 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
6935824 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
6935867 CGCCGCTAAAAAGCCTTAACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCT-AAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
6935911 CGCCGCTAAAAGCCTTGACCTTTAACGGCGTTTTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT
6935946 TTCCAATAAA
Statistics
Matches: 363, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
42 17 0.05
43 243 0.67
44 103 0.28
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.24
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:6935725 original size:87 final size:87
Alignment explanation
Indices: 6935522--6935945 Score: 737
Period size: 87 Copynumber: 4.9 Consensus size: 87
6935512 GTAAAAAAAG
* * * * *
6935522 CGCCGCT-AAAAGCCTTGACGTTTAGCAGCGCTTTACGCACAAACGCCGCTAAAAACCTTGACCT
1 CGCCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCT
6935586 TTAGCGGCG-TTTTCCCACAAA
66 TTAGCGGCGCTTTTCCCACAAA
*
6935607 CGCCGCTAAAAAGCCTTGACGTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCT
1 CGCCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCT
6935672 TTAGCGGCGCTTTTCCCACAAA
66 TTAGCGGCGCTTTTCCCACAAA
*
6935694 CGTCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCT
1 CGCCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCT
6935759 TTAGCGGCGCTTTTCCCACAAA
66 TTAGCGGCGCTTTTCCCACAAA
6935781 CGCCGCT-AAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCT
1 CGCCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCT
6935845 TTAGCGGCGCTTTTCCCACAAA
66 TTAGCGGCGCTTTTCCCACAAA
*
6935867 CGCCGCTAAAAAGCCTTAACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCT
1 CGCCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCT
* *
6935932 TTAACGGCGTTTTT
66 TTAGCGGCGCTTTT
6935946 TTCCAATAAA
Statistics
Matches: 326, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
85 7 0.02
86 148 0.45
87 171 0.52
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.24
Consensus pattern (87 bp):
CGCCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCT
TTAGCGGCGCTTTTCCCACAAA
Found at i:6935794 original size:173 final size:173
Alignment explanation
Indices: 6935522--6935944 Score: 742
Period size: 173 Copynumber: 2.5 Consensus size: 173
6935512 GTAAAAAAAG
* * * * *
6935522 CGCCGCT-AAAAGCCTTGACGTTTAGCAGCGCTTTACGCACAAACGCCGCTAAAAACCTTGACCT
1 CGCCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCT
*
6935586 TTAGCGGCGTTTTCCCACAAACGCCGCTAAAAAGCCTTGACGTTTAGCGGCGCTTTTCCCACAAA
66 TTAGCGGCGTTTTCCCACAAACGCCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
6935651 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
131 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
6935694 CGTCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCT
1 CGCCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCT
6935759 TTAGCGGCGCTTTTCCCACAAACGCCGCT-AAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAA
66 TTAGCGGCG-TTTTCCCACAAACGCCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAA
6935823 ACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
130 ACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
6935867 CGCCGCTAAAAAGCCTTAACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCT
1 CGCCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCT
*
6935932 TTAACGGCGTTTT
66 TTAGCGGCGTTTT
6935945 TTTCCAATAA
Statistics
Matches: 239, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
172 10 0.04
173 210 0.88
174 19 0.08
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.24
Consensus pattern (173 bp):
CGCCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCT
TTAGCGGCGTTTTCCCACAAACGCCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:6936103 original size:17 final size:17
Alignment explanation
Indices: 6936081--6936131 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
6936071 TTATTTATGA
6936081 TGAATTATATTCACAAT
1 TGAATTATATTCACAAT
*
6936098 TGAATT-TA-T---GA-
1 TGAATTATATTCACAAT
6936109 TGAATTATATTCACAAT
1 TGAATTATATTCACAAT
6936126 TGAATT
1 TGAATT
6936132 CAATTCATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 12
0.65 0.05 0.30
Matches are distributed among these distances:
11 6 0.23
12 3 0.12
13 1 0.04
15 1 0.04
16 3 0.12
17 12 0.46
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (17 bp):
TGAATTATATTCACAAT
Found at i:6936113 original size:28 final size:28
Alignment explanation
Indices: 6936073--6936131 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
6936063 GTTTATCTTT
6936073 ATTTATGATGAATTATATTCACAATTGA
1 ATTTATGATGAATTATATTCACAATTGA
6936101 ATTTATGATGAATTATATTCACAATTGA
1 ATTTATGATGAATTATATTCACAATTGA
6936129 ATT
1 ATT
6936132 CAATTCATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (28 bp):
ATTTATGATGAATTATATTCACAATTGA
Found at i:6938162 original size:26 final size:26
Alignment explanation
Indices: 6938125--6938208 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
6938115 TGATACAAAT
* *
6938125 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6938151 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6938177 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
6938203 TGATAA
1 TGATAA
6938209 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:6939868 original size:27 final size:27
Alignment explanation
Indices: 6939827--6939966 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 27
6939817 GAGGAAGCGT
* *
6939827 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAATTATCTGA
*
6939854 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAATTATCTGA
* *
6939881 TCTGGTGGCTCTGCCACATTTATCTGT
1 TCTGGTGGCTCTGCCACAATTATCTGA
*
6939908 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAATTATCTG-A
* * *
6939936 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAATTATCTGA
6939962 TCTGG
1 TCTGG
6939967 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
26 5 0.05
27 82 0.80
28 15 0.15
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAATTATCTGA
Found at i:6943473 original size:27 final size:27
Alignment explanation
Indices: 6943407--6943460 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
6943397 CATGATAGGG
6943407 TAGCCCAAATTAAAAGTGATCTAATTT
1 TAGCCCAAATTAAAAGTGATCTAATTT
6943434 TAGCCCAAATTAAAAGTGATCTAATTT
1 TAGCCCAAATTAAAAGTGATCTAATTT
6943461 AGTTAGAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.33
Consensus pattern (27 bp):
TAGCCCAAATTAAAAGTGATCTAATTT
Found at i:6943793 original size:25 final size:26
Alignment explanation
Indices: 6943765--6943822 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
6943755 TTTATTTCAT
*
6943765 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAACATAA
* * *
6943790 TAAATCAAATATATTTAGAAACATAA
1 TAAATAAAAAATATTTAAAAACATAA
6943816 -AAATAAA
1 TAAATAAA
6943823 TATTAAAACA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 16 0.59
26 11 0.41
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (26 bp):
TAAATAAAAAATATTTAAAAACATAA
Found at i:6943815 original size:26 final size:24
Alignment explanation
Indices: 6943777--6943825 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
6943767 AATAAAAAAT
*
6943777 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAAT-AAATATA
*
6943803 TTTAGAAACATAAAAATAAATAT
1 TTTAAAAACATAAAAATAAATAT
6943826 TAAAACAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 4 0.19
26 11 0.52
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (24 bp):
TTTAAAAACATAAAAATAAATATA
Found at i:6943845 original size:21 final size:22
Alignment explanation
Indices: 6943812--6943854 Score: 79
Period size: 21 Copynumber: 2.0 Consensus size: 22
6943802 ATTTAGAAAC
6943812 ATAAAAATAAATATTAAAACAA
1 ATAAAAATAAATATTAAAACAA
6943834 ATAAAAAT-AATATTAAAACAA
1 ATAAAAATAAATATTAAAACAA
6943855 TTCTTAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (22 bp):
ATAAAAATAAATATTAAAACAA
Found at i:6947023 original size:2 final size:2
Alignment explanation
Indices: 6947016--6947080 Score: 130
Period size: 2 Copynumber: 32.5 Consensus size: 2
6947006 AAAGAGATAA
6947016 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
6947058 TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG T
6947081 TTTCTCAACA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 63 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:6955423 original size:5 final size:5
Alignment explanation
Indices: 6955388--6955421 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
6955378 TATGCAATAG
*
6955388 TATTT TATTT TATTT TATTT TATTT TATTC TATT
1 TATTT TATTT TATTT TATTT TATTT TATTT TATT
6955422 CTGTTGATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (5 bp):
TATTT
Found at i:6956819 original size:16 final size:16
Alignment explanation
Indices: 6956798--6956842 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
6956788 TCACATCAAA
*
6956798 AAAAAATTTAAAAATT
1 AAAAAATTTAAAAAAT
*
6956814 AAAAAATCTAAAAAAT
1 AAAAAATTTAAAAAAT
6956830 AAATAAATTTAAA
1 AAA-AAATTTAAA
6956843 TAACTTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 17 0.68
17 8 0.32
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAAAATTTAAAAAAT
Found at i:6956819 original size:17 final size:17
Alignment explanation
Indices: 6956797--6956842 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
6956787 GTCACATCAA
6956797 AAAAAAATTT-AAAAAT
1 AAAAAAATTTAAAAAAT
* *
6956813 TAAAAAATCTAAAAAAT
1 AAAAAAATTTAAAAAAT
*
6956830 AAATAAATTTAAA
1 AAAAAAATTTAAA
6956843 TAACTTTTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAAAAATTTAAAAAAT
Found at i:6956995 original size:11 final size:11
Alignment explanation
Indices: 6956968--6956996 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
6956958 AGGAATTAAT
6956968 TTTTAAAATTA
1 TTTTAAAATTA
6956979 -TTTAAAATTA
1 TTTTAAAATTA
6956989 TTTTAAAA
1 TTTTAAAA
6956997 AATATCCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
TTTTAAAATTA
Found at i:6959487 original size:14 final size:14
Alignment explanation
Indices: 6959468--6959495 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6959458 ATAATAGTGC
6959468 AAGTAAACATGTAT
1 AAGTAAACATGTAT
6959482 AAGTAAACATGTAT
1 AAGTAAACATGTAT
6959496 CAGAATCCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (14 bp):
AAGTAAACATGTAT
Found at i:6965925 original size:13 final size:13
Alignment explanation
Indices: 6965898--6965941 Score: 63
Period size: 13 Copynumber: 3.3 Consensus size: 13
6965888 ATGCTAAAGC
6965898 TAAATTAATAA-AA
1 TAAA-TAATAATAA
6965911 TAAATAATAATAA
1 TAAATAATAATAA
6965924 TAAATAATAAATAA
1 TAAATAAT-AATAA
6965938 TAAA
1 TAAA
6965942 ATAAAATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
12 6 0.21
13 14 0.48
14 9 0.31
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
TAAATAATAATAA
Found at i:6965929 original size:7 final size:7
Alignment explanation
Indices: 6965909--6965941 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
6965899 AAATTAATAA
6965909 AATAAAT
1 AATAAAT
6965916 AAT-AAT
1 AATAAAT
6965922 AATAAAT
1 AATAAAT
6965929 AATAAAT
1 AATAAAT
6965936 AATAAA
1 AATAAA
6965942 ATAAAATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AATAAAT
Found at i:6965929 original size:10 final size:10
Alignment explanation
Indices: 6965904--6965940 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
6965894 AAGCTAAATT
6965904 AATAA-AATA
1 AATAATAATA
6965913 AATAATAAT-
1 AATAATAATA
6965922 AATAAATAATA
1 AAT-AATAATA
6965933 AATAATAA
1 AATAATAA
6965941 AATAAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
9 8 0.32
10 14 0.56
11 3 0.12
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (10 bp):
AATAATAATA
Found at i:6965949 original size:20 final size:20
Alignment explanation
Indices: 6965909--6965946 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
6965899 AAATTAATAA
6965909 AATAAATAATAATAATAAAT
1 AATAAATAATAATAATAAAT
6965929 AATAAATAATAA-AATAAA
1 AATAAATAATAATAATAAA
6965947 ATATTATCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (20 bp):
AATAAATAATAATAATAAAT
Found at i:6969406 original size:17 final size:17
Alignment explanation
Indices: 6969351--6969408 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 17
6969341 TTAAGGGTGG
*
6969351 TGGGTTGGTTGGTGGGTCT
1 TGGGTTGATT-GTGGGT-T
*
6969370 TGGGTTGATTTTGGGTT
1 TGGGTTGATTGTGGGTT
*
6969387 TGGGTTTA-TGTGGGTAT
1 TGGGTTGATTGTGGGT-T
6969404 TGGGT
1 TGGGT
6969409 ATGGTAAGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
16 6 0.18
17 14 0.41
18 5 0.15
19 9 0.26
ACGTcount: A:0.05, C:0.02, G:0.47, T:0.47
Consensus pattern (17 bp):
TGGGTTGATTGTGGGTT
Found at i:6969733 original size:10 final size:10
Alignment explanation
Indices: 6969718--6969743 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
6969708 TAAAAATTAT
6969718 ATAAATGAAA
1 ATAAATGAAA
6969728 ATAAATGAAA
1 ATAAATGAAA
6969738 ATAAAT
1 ATAAAT
6969744 TTAGGTTGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (10 bp):
ATAAATGAAA
Found at i:6972679 original size:44 final size:45
Alignment explanation
Indices: 6972589--6972717 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
6972579 GACAGAACGA
*
6972589 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
6972635 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
6972679 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
6972718 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:6978823 original size:44 final size:45
Alignment explanation
Indices: 6978733--6978861 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
6978723 GACAGAACGA
*
6978733 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
6978779 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
6978823 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
6978862 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:6985365 original size:6 final size:6
Alignment explanation
Indices: 6985345--6985384 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
6985335 CTAAATTAAT
*
6985345 AAAATA AATAATA AAAATA AAAATA AATAATA AAACTA AA
1 AAAATA AA-AATA AAAATA AAAATA AA-AATA AAAATA AA
6985385 TAAAATAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 19 0.61
7 12 0.39
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:6985367 original size:19 final size:19
Alignment explanation
Indices: 6985345--6985384 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
6985335 CTAAATTAAT
6985345 AAAATAAATAATAAAAATA
1 AAAATAAATAATAAAAATA
*
6985364 AAAATAAATAATAAAACTA
1 AAAATAAATAATAAAAATA
6985383 AA
1 AA
6985385 TAAAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.20
Consensus pattern (19 bp):
AAAATAAATAATAAAAATA
Found at i:6985385 original size:23 final size:19
Alignment explanation
Indices: 6985342--6985399 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 19
6985332 AAGCTAAATT
6985342 AATAAAATAAATAAT-AAA
1 AATAAAATAAATAATAAAA
6985360 AATAAAAATAAATAATAAAACTA
1 AAT-AAAATAAATAAT-AAA--A
6985383 AATAAAATAAAATAATA
1 AATAAAAT-AAATAATA
6985400 TCTTCTATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
18 3 0.09
19 12 0.35
21 2 0.06
22 6 0.18
23 11 0.32
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (19 bp):
AATAAAATAAATAATAAAA
Found at i:6985399 original size:13 final size:13
Alignment explanation
Indices: 6985336--6985399 Score: 60
Period size: 13 Copynumber: 4.8 Consensus size: 13
6985326 AAGCTAAAGC
*
6985336 TAAATTAATAAAA
1 TAAAATAATAAAA
6985349 T-AAATAATAAAAA
1 TAAAATAAT-AAAA
*
6985362 TAAAAATAA-ATAA
1 T-AAAATAATAAAA
6985375 TAAAACTAAATAAAA
1 TAAAA-T-AATAAAA
6985390 TAAAATAATA
1 TAAAATAATA
6985400 TCTTCTATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
12 10 0.24
13 15 0.36
14 3 0.07
15 14 0.33
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (13 bp):
TAAAATAATAAAA
Found at i:6993789 original size:6 final size:6
Alignment explanation
Indices: 6993778--6993821 Score: 52
Period size: 6 Copynumber: 7.0 Consensus size: 6
6993768 ATTTAGACAT
* *
6993778 TTTTTA TTTTTA TTTTAATA TTTTTA TTTTTA ATTTAA TTTTTA
1 TTTTTA TTTTTA TTTT--TA TTTTTA TTTTTA TTTTTA TTTTTA
6993822 CATTCTAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
6 26 0.81
8 6 0.19
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (6 bp):
TTTTTA
Found at i:6993792 original size:21 final size:22
Alignment explanation
Indices: 6993765--6993814 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 22
6993755 TTTATTTCTA
6993765 TTAATTTAGACAT-TTTTTATTT
1 TTAATTTAGA-ATATTTTTATTT
*
6993787 TT-ATTT-TAATATTTTTATTT
1 TTAATTTAGAATATTTTTATTT
6993807 TTAATTTA
1 TTAATTTA
6993815 ATTTTTACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 2 0.08
20 12 0.50
21 8 0.33
22 2 0.08
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (22 bp):
TTAATTTAGAATATTTTTATTT
Found at i:6993803 original size:20 final size:19
Alignment explanation
Indices: 6993776--6993820 Score: 72
Period size: 20 Copynumber: 2.3 Consensus size: 19
6993766 TAATTTAGAC
*
6993776 ATTTTTTATTTTTATTTTA
1 ATTTTTTATTTTTAATTTA
6993795 ATATTTTTATTTTTAATTTA
1 AT-TTTTTATTTTTAATTTA
6993815 ATTTTT
1 ATTTTT
6993821 ACATTCTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 6 0.25
20 18 0.75
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (19 bp):
ATTTTTTATTTTTAATTTA
Found at i:6993820 original size:13 final size:14
Alignment explanation
Indices: 6993803--6993834 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
6993793 TAATATTTTT
6993803 ATTTTTA-ATT-TA
1 ATTTTTACATTCTA
6993815 ATTTTTACATTCTA
1 ATTTTTACATTCTA
6993829 ATTTTT
1 ATTTTT
6993835 CGTTTGTTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 3 0.17
14 8 0.44
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (14 bp):
ATTTTTACATTCTA
Found at i:6994572 original size:99 final size:98
Alignment explanation
Indices: 6994401--6994696 Score: 486
Period size: 99 Copynumber: 3.0 Consensus size: 98
6994391 TTGAAGTACT
* * *
6994401 TCCCATCAGCTAAAATAGTTAAGTTAAGAAACAACATCTCTTCTTTTTCACAATTTGATATGGAG
1 TCCCACCAGCTAAAATAGTTAAGTTGAGAAACAACATCTCTTCTTTTTCTCAATTTGATATGGAG
6994466 ACATTATACGATGCATGAGAGAGATTTAAGGATC
66 ACATTATA-GATGCATGAGAGAGATTTAAGGATC
* *
6994500 TCCCACCAGCTAAAATAATTAAGTTGAGAAACAACATCTCTTCTTTTTCTCAAATTGATATGGAG
1 TCCCACCAGCTAAAATAGTTAAGTTGAGAAACAACATCTCTTCTTTTTCTCAATTTGATATGGAG
*
6994565 ACATTATATGATACATGAGAGAGATTTAAGGATC
66 ACATTATA-GATGCATGAGAGAGATTTAAGGATC
* *
6994599 TCTCACCAACTAAAATAGTTAAGTTGAGAAACAACATCTCTTCTTTTTCTCAATTTGATATGGAG
1 TCCCACCAGCTAAAATAGTTAAGTTGAGAAACAACATCTCTTCTTTTTCTCAATTTGATATGGAG
*
6994664 ACATTAT-GATGCATGAGAGAAATTTAAGGATC
66 ACATTATAGATGCATGAGAGAGATTTAAGGATC
6994696 T
1 T
6994697 TTTGAGAATG
Statistics
Matches: 184, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
97 24 0.13
99 160 0.87
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (98 bp):
TCCCACCAGCTAAAATAGTTAAGTTGAGAAACAACATCTCTTCTTTTTCTCAATTTGATATGGAG
ACATTATAGATGCATGAGAGAGATTTAAGGATC
Found at i:6996127 original size:20 final size:20
Alignment explanation
Indices: 6996097--6996165 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
6996087 GATCGAGCCA
*
6996097 CCAGCAATGCAGATAAACTG
1 CCAGTAATGCAGATAAACTG
* *
6996117 TCAGTAATGCA-AAAAAGCTG
1 CCAGTAATGCAGATAAA-CTG
* *
6996137 CCAGTATTTCAGATAAACTG
1 CCAGTAATGCAGATAAACTG
6996157 CCAGTAATG
1 CCAGTAATG
6996166 TGGTTAAGCC
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
19 4 0.11
20 30 0.79
21 4 0.11
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (20 bp):
CCAGTAATGCAGATAAACTG
Found at i:7000766 original size:16 final size:15
Alignment explanation
Indices: 7000743--7000776 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
7000733 CCATTAATAT
*
7000743 TTAATTATTATTTTA
1 TTAATTATTACTTTA
7000758 TTAAGTTATTACTTTA
1 TTAA-TTATTACTTTA
7000774 TTA
1 TTA
7000777 TTAGTATTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (15 bp):
TTAATTATTACTTTA
Found at i:7002531 original size:69 final size:69
Alignment explanation
Indices: 7002456--7002594 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
7002446 TAATTTTACT
7002456 ATCTCTTTGTCTTATTTATTTTTATCTTATTTAGATTCGCTTATGATTCCGGTTTTCACTATTCT
1 ATCTCTTTGTCTTATTTATTTTTATCTTATTTAGATTCGCTTATGATTCCGGTTTTCACTATTCT
7002521 GGCG
66 GGCG
*
7002525 ATCTCTTTGTCTTATTTATTTTTGTCTTATTTAGATTCGCTTATGATTCCGGTTTTCACTATTCT
1 ATCTCTTTGTCTTATTTATTTTTATCTTATTTAGATTCGCTTATGATTCCGGTTTTCACTATTCT
7002590 GGCG
66 GGCG
7002594 A
1 A
7002595 ACTCATCCAA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.16, C:0.17, G:0.14, T:0.53
Consensus pattern (69 bp):
ATCTCTTTGTCTTATTTATTTTTATCTTATTTAGATTCGCTTATGATTCCGGTTTTCACTATTCT
GGCG
Found at i:7012386 original size:17 final size:15
Alignment explanation
Indices: 7012361--7012399 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
7012351 AGAATGTAAG
*
7012361 AAAACAGAATGAGAAA
1 AAAAAAGAAT-AGAAA
7012377 CAAAAAAGAATAGAAA
1 -AAAAAAGAATAGAAA
7012393 AAAAAAG
1 AAAAAAG
7012400 GAAAGTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.33
16 5 0.24
17 9 0.43
ACGTcount: A:0.74, C:0.05, G:0.15, T:0.05
Consensus pattern (15 bp):
AAAAAAGAATAGAAA
Found at i:7012397 original size:16 final size:17
Alignment explanation
Indices: 7012361--7012398 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
7012351 AGAATGTAAG
* *
7012361 AAAACAGAATGAGAAAC
1 AAAAAAGAATGAGAAAA
7012378 AAAAAAGAAT-AGAAAA
1 AAAAAAGAATGAGAAAA
7012394 AAAAA
1 AAAAA
7012399 GGAAAGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.76, C:0.05, G:0.13, T:0.05
Consensus pattern (17 bp):
AAAAAAGAATGAGAAAA
Found at i:7013284 original size:18 final size:17
Alignment explanation
Indices: 7013252--7013290 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
7013242 TAAGAAACCA
*
7013252 AATTATATAATAATTAT
1 AATTATAAAATAATTAT
*
7013269 AATTATAAACATAATTCT
1 AATTATAAA-ATAATTAT
7013287 AATT
1 AATT
7013291 TGAAAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTATAAAATAATTAT
Found at i:7014055 original size:33 final size:33
Alignment explanation
Indices: 7014018--7014087 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 33
7014008 TAAATGCAAC
7014018 TTAACAAGCAAATATCTCT-AAATAATAACAAAA
1 TTAACAA-CAAATATCTCTAAAATAATAACAAAA
* *
7014051 TT---AACAAATGTCTTTAAAATAATAACAAAA
1 TTAACAACAAATATCTCTAAAATAATAACAAAA
7014081 TTAACAA
1 TTAACAA
7014088 TAAAATAGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
29 9 0.29
30 18 0.58
33 4 0.13
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (33 bp):
TTAACAACAAATATCTCTAAAATAATAACAAAA
Found at i:7014059 original size:29 final size:30
Alignment explanation
Indices: 7014026--7014087 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
7014016 ACTTAACAAG
7014026 CAAATATCTCT-AAATAATAACAAAATTAA
1 CAAATATCTCTAAAATAATAACAAAATTAA
* *
7014055 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATATCTCTAAAATAATAACAAAATTAA
7014085 CAA
1 CAA
7014088 TAAAATAGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.30
30 21 0.70
ACGTcount: A:0.58, C:0.13, G:0.02, T:0.27
Consensus pattern (30 bp):
CAAATATCTCTAAAATAATAACAAAATTAA
Found at i:7015685 original size:29 final size:30
Alignment explanation
Indices: 7015652--7015714 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 30
7015642 CATTAGTGAA
*
7015652 TAAATTTA-AAGATTAAACCATATTACCTT
1 TAAATTCACAAGATTAAACCATATTACCTT
* **
7015681 TAAA-TCACCATTTTAAACCATATTACCTT
1 TAAATTCACAAGATTAAACCATATTACCTT
7015710 TAAAT
1 TAAAT
7015715 CACCATTTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
28 2 0.07
29 26 0.93
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.38
Consensus pattern (30 bp):
TAAATTCACAAGATTAAACCATATTACCTT
Found at i:7015715 original size:29 final size:29
Alignment explanation
Indices: 7015664--7015722 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
7015654 AATTTAAAGA
7015664 TTAAACCATATTACCTTTAAATCACCATT
1 TTAAACCATATTACCTTTAAATCACCATT
7015693 TTAAACCATATTACCTTTAAATCACCATT
1 TTAAACCATATTACCTTTAAATCACCATT
7015722 T
1 T
7015723 CTCTTTGACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.37, C:0.24, G:0.00, T:0.39
Consensus pattern (29 bp):
TTAAACCATATTACCTTTAAATCACCATT
Found at i:7021793 original size:43 final size:43
Alignment explanation
Indices: 7021721--7021830 Score: 134
Period size: 43 Copynumber: 2.6 Consensus size: 43
7021711 TGAAAAAAAT
* * *
7021721 GCCAC-AAAAGATCAAGATTTTTAGTGACGTTTG-TGAAGAAAGC
1 GCCACTAAAAG-TCATGGTTTTTAGCGACGTTTGTTG-AGAAAGC
* *
7021764 GTCACTAAAAGTCATGGTTTTTAGCGACGTTTGTTGGGAAAGC
1 GCCACTAAAAGTCATGGTTTTTAGCGACGTTTGTTGAGAAAGC
*
7021807 GCCACTAAAAGTCATGGCTTTTAG
1 GCCACTAAAAGTCATGGTTTTTAG
7021831 TTGCGTTACT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
43 51 0.88
44 7 0.12
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (43 bp):
GCCACTAAAAGTCATGGTTTTTAGCGACGTTTGTTGAGAAAGC
Found at i:7022631 original size:13 final size:14
Alignment explanation
Indices: 7022605--7022633 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7022595 ACTAACGATG
7022605 AATTAAACCATTAT
1 AATTAAACCATTAT
7022619 AATTAAA-CATTAT
1 AATTAAACCATTAT
7022632 AA
1 AA
7022634 ATATTTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:7027697 original size:9 final size:9
Alignment explanation
Indices: 7027679--7028162 Score: 141
Period size: 9 Copynumber: 53.7 Consensus size: 9
7027669 TAAGTATAAT
7027679 TAAGTTATG
1 TAAGTTATG
*
7027688 TAAGTCATG
1 TAAGTTATG
7027697 T-A-TTATG
1 TAAGTTATG
7027704 TAAGTTATG
1 TAAGTTATG
*
7027713 TAAATTATG
1 TAAGTTATG
7027722 TAAGTTATG
1 TAAGTTATG
* *
7027731 -AATTTTGATCTT
1 TAA-GTT-A--TG
*
7027743 TAAATTATG
1 TAAGTTATG
*
7027752 TAAGTCATG
1 TAAGTTATG
7027761 T-A-TTATG
1 TAAGTTATG
7027768 TAAGTTATG
1 TAAGTTATG
7027777 T-A-TTATG
1 TAAGTTATG
7027784 TAAGTTATG
1 TAAGTTATG
*
7027793 TAAATTATG
1 TAAGTTATG
7027802 TAAGTTATG
1 TAAGTTATG
*
7027811 -AA-TTTTG
1 TAAGTTATG
** **
7027818 -ATCTTTAAA
1 TA-AGTTATG
*
7027827 TTA-TTATG
1 TAAGTTATG
7027835 TAAGTTATG
1 TAAGTTATG
7027844 T-A-TTATG
1 TAAGTTATG
7027851 TAAGTTATG
1 TAAGTTATG
* * *
7027860 AAATTTGATCTT
1 TAAGTT-A--TG
*
7027872 TAAATTATTATG
1 T-AA--GTTATG
7027884 TAAGTTATG
1 TAAGTTATG
*
7027893 TAAATTATG
1 TAAGTTATG
*
7027902 TAACTTATG
1 TAAGTTATG
* * *
7027911 AAATTTGATCTT
1 TAAGTT-A--TG
*
7027923 TAAATTATG
1 TAAGTTATG
7027932 TAAGTTATG
1 TAAGTTATG
*
7027941 -AAATT-TG
1 TAAGTTATG
* *
7027948 -AACTTTAAG
1 TAA-GTTATG
*
7027957 TTA-TTATG
1 TAAGTTATG
7027965 TAAGTTATG
1 TAAGTTATG
*
7027974 TAAATTATG
1 TAAGTTATG
*
7027983 TAACTTATG
1 TAAGTTATG
* * * *
7027992 AAATTTGGTCTT
1 TAA---GTTATG
*
7028004 TAAATTATG
1 TAAGTTATG
7028013 TAAGTTATG
1 TAAGTTATG
*
7028022 T-A-TCATG
1 TAAGTTATG
7028029 TAAGTTATG
1 TAAGTTATG
* * *
7028038 AAATTTGATCTC
1 TAAGTT-A--TG
*
7028050 TAAATTATG
1 TAAGTTATG
*
7028059 TAAGTCATG
1 TAAGTTATG
7028068 T-A-TTATG
1 TAAGTTATG
*
7028075 TAAGTTAAG
1 TAAGTTATG
*
7028084 TAAATTATG
1 TAAGTTATG
*
7028093 TGAGTTATG
1 TAAGTTATG
* * *
7028102 AAATTTGAACTT
1 TAAGTT--A-TG
*
7028114 TAAATTATG
1 TAAGTTATG
7028123 TAAGTTATG
1 TAAGTTATG
7028132 T-A-TTATG
1 TAAGTTATG
*
7028139 TAAATTATG
1 TAAGTTATG
*
7028148 TAAATTATG
1 TAAGTTATG
*
7028157 TGAGTT
1 TAAGTT
7028163 GCTAGTGAAC
Statistics
Matches: 346, Mismatches: 84, Indels: 90
0.67 0.16 0.17
Matches are distributed among these distances:
7 47 0.14
8 35 0.10
9 220 0.64
10 6 0.02
11 6 0.02
12 25 0.07
13 4 0.01
14 1 0.00
15 2 0.01
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:7027704 original size:16 final size:16
Alignment explanation
Indices: 7027683--7028149 Score: 161
Period size: 16 Copynumber: 29.0 Consensus size: 16
7027673 TATAATTAAG
*
7027683 TTATGTAAGTCATGTA
1 TTATGTAAGTTATGTA
7027699 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGT--A
*
7027717 TTATGTAAGTTATGAA
1 TTATGTAAGTTATGTA
* ** **
7027733 TTTTG-ATCTT-TAAA
1 TTATGTAAGTTATGTA
*
7027747 TTATGTAAGTCATGTA
1 TTATGTAAGTTATGTA
7027763 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
7027779 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGT--A
*
7027797 TTATGTAAGTTATGAA
1 TTATGTAAGTTATGTA
* **
7027813 TTTTG-ATCTTTAAAT-TA
1 TTATGTA-AGTT--ATGTA
7027830 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
*
7027846 TTATGTAAGTTATGAAA
1 TTATGTAAGTTATG-TA
**
7027863 TT-TG-ATCTTTAAAT-TA
1 TTATGTA-AGTT--ATGTA
7027879 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGT--A
* *
7027897 TTATGTAACTTATGAAA
1 TTATGTAAGTTATG-TA
** **
7027914 TT-TG-ATCTT-TAAA
1 TTATGTAAGTTATGTA
*
7027927 TTATGTAAGTTATGAAA
1 TTATGTAAGTTATG-TA
* *
7027944 TT-TG-AACTTTAAGTTA
1 TTATGTAA-GTTATG-TA
7027960 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGT--A
* *
7027978 TTATGTAACTTATGAAA
1 TTATGTAAGTTATG-TA
* **
7027995 TT-TG---GTCTTTAAA
1 TTATGTAAGT-TATGTA
7028008 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
* *
7028024 TCATGTAAGTTATGAAA
1 TTATGTAAGTTATG-TA
* **
7028041 TT-TG--A-TCTCTAAA
1 TTATGTAAGT-TATGTA
*
7028054 TTATGTAAGTCATGTA
1 TTATGTAAGTTATGTA
*
7028070 TTATGTAAGTTAAGTAAA
1 TTATGTAAGTTATGT--A
* *
7028088 TTATGTGAGTTATGAAA
1 TTATGTAAGTTATG-TA
* **
7028105 TT-TG-AACTT-TAAA
1 TTATGTAAGTTATGTA
7028118 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
*
7028134 TTATGTAAATTATGTA
1 TTATGTAAGTTATGTA
7028150 AATTATGTGA
Statistics
Matches: 334, Mismatches: 69, Indels: 96
0.67 0.14 0.19
Matches are distributed among these distances:
13 18 0.05
14 22 0.07
15 27 0.08
16 150 0.45
17 38 0.11
18 79 0.24
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.46
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:7027816 original size:80 final size:82
Alignment explanation
Indices: 7027683--7027859 Score: 313
Period size: 80 Copynumber: 2.2 Consensus size: 82
7027673 TATAATTAAG
*
7027683 TTATGTAAGTCATGTATTATGTAAGTTATGTAAATTATGTAAGTTATGAATTTTGATCTTT-AA-
1 TTATGTAAGTTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATGAATTTTGATCTTTAAAT
7027746 ATTATGTAAGTCATGTA
66 ATTATGTAAGTCATGTA
7027763 TTATGTAAGTTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATGAATTTTGATCTTTAAAT
1 TTATGTAAGTTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATGAATTTTGATCTTTAAA-
*
7027828 TATTATGTAAGTTATGTA
65 TATTATGTAAGTCATGTA
7027846 TTATGTAAGTTATG
1 TTATGTAAGTTATG
7027860 AAATTTGATC
Statistics
Matches: 92, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
80 60 0.65
81 2 0.02
83 30 0.33
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.48
Consensus pattern (82 bp):
TTATGTAAGTTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATGAATTTTGATCTTTAAAT
ATTATGTAAGTCATGTA
Found at i:7027841 original size:51 final size:51
Alignment explanation
Indices: 7027777--7027945 Score: 278
Period size: 49 Copynumber: 3.4 Consensus size: 51
7027767 GTAAGTTATG
*
7027777 TATTATGTAAGTTATGTAAATTATGTAAGTTATGAATTTTGATCTTTAAAT
1 TATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAAAT
7027828 TATTATGTAAGTTATGT--ATTATGTAAGTTATGAAATTTGATCTTTAAAT
1 TATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAAAT
*
7027877 TATTATGTAAGTTATGTAAATTATGTAACTTATGAAATTTGATCTTT-AA-
1 TATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAAAT
7027926 -ATTATGTAAGTTATG-AAATT
1 TATTATGTAAGTTATGTAAATT
7027946 TGAACTTTAA
Statistics
Matches: 114, Mismatches: 2, Indels: 8
0.92 0.02 0.06
Matches are distributed among these distances:
47 5 0.04
48 15 0.13
49 48 0.42
50 2 0.02
51 44 0.39
ACGTcount: A:0.36, C:0.02, G:0.14, T:0.48
Consensus pattern (51 bp):
TATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAAAT
Found at i:7027927 original size:30 final size:30
Alignment explanation
Indices: 7027893--7028131 Score: 166
Period size: 30 Copynumber: 7.6 Consensus size: 30
7027883 GTAAGTTATG
* *
7027893 TAAATTATGTAACTTATGAAATTTGATCTT
1 TAAATTATGTAAGTTATGAAATTTGAACTT
7027923 TAAATTATGTAAGTTATGAAATTTGAACTT
1 TAAATTATGTAAGTTATGAAATTTGAACTT
7027953 TAAGTTATTATGTAAGTTATGTAAATTATGTAACTT
1 TAA---ATTATGTAAGTTATG-AAATT-TG-AACTT
* *
7027989 ATGAAATT-TG---GTCT-TTAAATTATGTAAGTT
1 -T-AAATTATGTAAGT-TATGAAATT-TG-AACTT
** * * *
7028019 ATGTATCATGTAAGTTATGAAATTTGATCTC
1 -TAAATTATGTAAGTTATGAAATTTGAACTT
* * *
7028050 TAAATTATGTAAGTCATG-TATTATGTAAGTT
1 TAAATTATGTAAGTTATGAAATT-TG-AACTT
*
7028081 AAGTAAATTATGTGAGTTATGAAATTTGAACTT
1 ---TAAATTATGTAAGTTATGAAATTTGAACTT
7028114 TAAATTATGTAAGTTATG
1 TAAATTATGTAAGTTATG
7028132 TATTATGTAA
Statistics
Matches: 165, Mismatches: 24, Indels: 40
0.72 0.10 0.17
Matches are distributed among these distances:
29 5 0.03
30 81 0.49
31 7 0.04
32 4 0.02
33 27 0.16
34 25 0.15
35 8 0.05
36 5 0.03
37 1 0.01
38 2 0.01
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.44
Consensus pattern (30 bp):
TAAATTATGTAAGTTATGAAATTTGAACTT
Found at i:7027942 original size:81 final size:81
Alignment explanation
Indices: 7027845--7028021 Score: 327
Period size: 81 Copynumber: 2.2 Consensus size: 81
7027835 TAAGTTATGT
*
7027845 ATTATGTAAGTTATGAAATTTGATCTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
7027910 GAAATTTGATCTTTAA
66 GAAATTTGATCTTTAA
*
7027926 ATTATGTAAGTTATGAAATTTGAACTTTAAGTTATTATGTAAGTTATGTAAATTATGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
*
7027991 GAAATTTGGTCTTTAA
66 GAAATTTGATCTTTAA
7028007 ATTATGTAAGTTATG
1 ATTATGTAAGTTATG
7028022 TATCATGTAA
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
81 93 1.00
ACGTcount: A:0.36, C:0.03, G:0.14, T:0.46
Consensus pattern (81 bp):
ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
GAAATTTGATCTTTAA
Found at i:7028043 original size:46 final size:46
Alignment explanation
Indices: 7027926--7028081 Score: 213
Period size: 46 Copynumber: 3.3 Consensus size: 46
7027916 TGATCTTTAA
*
7027926 ATTATGTAAGTTATGAAATTTGAACTTTAAGTTATTATGTAAGTTATGT
1 ATTATGTAAGTTATGAAATTTGATCTTTAA---ATTATGTAAGTTATGT
* *
7027975 AAATTATGTAACTTATGAAATTTGGTCTTTAAATTATGTAAGTTATGT
1 --ATTATGTAAGTTATGAAATTTGATCTTTAAATTATGTAAGTTATGT
* * *
7028023 ATCATGTAAGTTATGAAATTTGATCTCTAAATTATGTAAGTCATGT
1 ATTATGTAAGTTATGAAATTTGATCTTTAAATTATGTAAGTTATGT
7028069 ATTATGTAAGTTA
1 ATTATGTAAGTTA
7028082 AGTAAATTAT
Statistics
Matches: 96, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
46 53 0.55
48 16 0.17
51 27 0.28
ACGTcount: A:0.35, C:0.04, G:0.15, T:0.45
Consensus pattern (46 bp):
ATTATGTAAGTTATGAAATTTGATCTTTAAATTATGTAAGTTATGT
Found at i:7028093 original size:34 final size:33
Alignment explanation
Indices: 7028050--7028162 Score: 117
Period size: 34 Copynumber: 3.5 Consensus size: 33
7028040 ATTTGATCTC
* *
7028050 TAAATTATGTAAGTCATGTATTATGTAAGTTAAG
1 TAAATTATGTAAGTTATGTATTATGTAAATT-AG
* * *
7028084 TAAATTATGTGAGTTATGAAATT-TG-AACTT--
1 TAAATTATGTAAGTTATG-TATTATGTAAATTAG
7028114 TAAATTATGTAAGTTATGTATTATGTAAATTATG
1 TAAATTATGTAAGTTATGTATTATGTAAATTA-G
*
7028148 TAAATTATGTGAGTT
1 TAAATTATGTAAGTT
7028163 GCTAGTGAAC
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
29 3 0.05
30 19 0.29
31 4 0.06
33 4 0.06
34 32 0.49
35 3 0.05
ACGTcount: A:0.37, C:0.02, G:0.17, T:0.44
Consensus pattern (33 bp):
TAAATTATGTAAGTTATGTATTATGTAAATTAG
Found at i:7028201 original size:17 final size:17
Alignment explanation
Indices: 7028181--7028214 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7028171 ACTTGAAAAA
7028181 ATATATTACTTATGAAT
1 ATATATTACTTATGAAT
*
7028198 ATATATTACTTTTGAAT
1 ATATATTACTTATGAAT
7028215 TAGAAACATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (17 bp):
ATATATTACTTATGAAT
Found at i:7029678 original size:14 final size:15
Alignment explanation
Indices: 7029653--7029686 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
7029643 TTAATATACA
7029653 ATATAGTTTTACTTC
1 ATATAGTTTTACTTC
7029668 ATATA-TTTTACTTC
1 ATATAGTTTTACTTC
7029682 ATATA
1 ATATA
7029687 ATTATTATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.74
15 5 0.26
ACGTcount: A:0.32, C:0.12, G:0.03, T:0.53
Consensus pattern (15 bp):
ATATAGTTTTACTTC
Found at i:7031411 original size:27 final size:27
Alignment explanation
Indices: 7031363--7031521 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
7031353 ACGAGGCTGC
* *
7031363 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
7031390 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
7031416 CAGATATATATGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
7031443 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
7031470 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
7031497 CAGATAATTGTAGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
7031522 GACGCTTCCT
Statistics
Matches: 114, Mismatches: 10, Indels: 16
0.81 0.07 0.11
Matches are distributed among these distances:
26 10 0.09
27 99 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:7031522 original size:54 final size:54
Alignment explanation
Indices: 7031381--7031524 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
7031371 GTGACGAAGT
* *
7031381 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATATGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATATGGCAGAGC
*
7031435 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATATGGCAGAGC
*
7031489 CACCAGATCAGATAATTGTAGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
7031525 GCTTCCTCCA
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 5 0.06
54 80 0.94
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATATGGCAGAGC
Found at i:7033986 original size:37 final size:37
Alignment explanation
Indices: 7033936--7034053 Score: 182
Period size: 37 Copynumber: 3.2 Consensus size: 37
7033926 CTATGCAGCA
*
7033936 GATGCACGGGGCGAAGGCAATGGAGGAGATGGGTTGC
1 GATGCACGGGGCGAAGGCGATGGAGGAGATGGGTTGC
* *
7033973 GATGCACGGGGCGAAGGCGATGGAGGGGATGGTTTGC
1 GATGCACGGGGCGAAGGCGATGGAGGAGATGGGTTGC
* *
7034010 GATGCACGGGGAGAAGGCGATGAAGGAGATGGGTTGC
1 GATGCACGGGGCGAAGGCGATGGAGGAGATGGGTTGC
*
7034047 AATGCAC
1 GATGCAC
7034054 AGGGAGATTT
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.25, C:0.14, G:0.47, T:0.14
Consensus pattern (37 bp):
GATGCACGGGGCGAAGGCGATGGAGGAGATGGGTTGC
Found at i:7034031 original size:18 final size:18
Alignment explanation
Indices: 7033971--7034031 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
7033961 GAGATGGGTT
*
7033971 GCGATGCACGGGGCGAAG
1 GCGATGCACGGGGAGAAG
* ***
7033989 GCGATGGA-GGGGATGGTTT
1 GCGATGCACGGGGA--GAAG
7034008 GCGATGCACGGGGAGAAG
1 GCGATGCACGGGGAGAAG
7034026 GCGATG
1 GCGATG
7034032 AAGGAGATGG
Statistics
Matches: 31, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
17 4 0.13
18 14 0.45
19 8 0.26
20 5 0.16
ACGTcount: A:0.21, C:0.15, G:0.51, T:0.13
Consensus pattern (18 bp):
GCGATGCACGGGGAGAAG
Found at i:7034964 original size:14 final size:14
Alignment explanation
Indices: 7034945--7034979 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7034935 AAAATTATAG
7034945 CCTAAACCCAAAAT
1 CCTAAACCCAAAAT
*
7034959 CCTAAACCTAAAAT
1 CCTAAACCCAAAAT
*
7034973 CATAAAC
1 CCTAAAC
7034980 ACTAAACCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.51, C:0.31, G:0.00, T:0.17
Consensus pattern (14 bp):
CCTAAACCCAAAAT
Found at i:7037678 original size:15 final size:14
Alignment explanation
Indices: 7037658--7037706 Score: 57
Period size: 15 Copynumber: 3.6 Consensus size: 14
7037648 TTAAAATACG
7037658 ATTAAATTATTTATT
1 ATTAAATTATTT-TT
*
7037673 ATTAAATTATATTT
1 ATTAAATTATTTTT
*
7037687 AAT-AA-TATTTTT
1 ATTAAATTATTTTT
7037699 ATTAAATT
1 ATTAAATT
7037707 TTAATGACAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
12 8 0.29
13 4 0.14
14 5 0.18
15 11 0.39
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTAAATTATTTTT
Found at i:7037687 original size:52 final size:57
Alignment explanation
Indices: 7037545--7037691 Score: 153
Period size: 58 Copynumber: 2.6 Consensus size: 57
7037535 TACAATTTAA
* * * **
7037545 AAATTATAAAGTTATTTATT-AATTCATAATTTAATAATAATTATATTAAGAATATTATT
1 AAATTATATA-TTACTTATTAAATT-AT-ATTTAATAAAAATTATATTAAGAATACGATT
* *
7037604 AAATTATATATTATCTTATTAAATTGTATTTAATAAAAATTATGTTAA-AATACGATT
1 AAATTATATATTA-CTTATTAAATTATATTTAATAAAAATTATATTAAGAATACGATT
7037661 AAA-T-TAT-TTA-TTATTAAATTATATTTAATAA
1 AAATTATATATTACTTATTAAATTATATTTAATAA
7037692 TATTTTTATT
Statistics
Matches: 78, Mismatches: 8, Indels: 11
0.80 0.08 0.11
Matches are distributed among these distances:
52 20 0.26
54 3 0.04
55 3 0.04
56 1 0.01
57 10 0.13
58 22 0.28
59 15 0.19
60 4 0.05
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (57 bp):
AAATTATATATTACTTATTAAATTATATTTAATAAAAATTATATTAAGAATACGATT
Found at i:7037704 original size:52 final size:56
Alignment explanation
Indices: 7037545--7037704 Score: 159
Period size: 52 Copynumber: 2.9 Consensus size: 56
7037535 TACAATTTAA
* * **
7037545 AAATTATAAAGTTATTTATT-AATTCATAATTTAATAATAATTATATTAAGAATATTATT
1 AAATTATATA-TTACTTATTAAATT-AT-ATTTAATAATAATTATATTAA-AATACGATT
* * *
7037604 AAATTATATATTATCTTATTAAATTGTATTTAATAAAAATTATGTTAAAATACGATT
1 AAATTATATATTA-CTTATTAAATTATATTTAATAATAATTATATTAAAATACGATT
* *
7037661 AAA-T-TAT-TTA-TTATTAAATTATATTTAATAATATTTTTATTAAA
1 AAATTATATATTACTTATTAAATTATATTTAATAATAATTATATTAAA
7037705 TTTTAATGAC
Statistics
Matches: 87, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
52 29 0.33
54 3 0.03
55 3 0.03
56 1 0.01
57 10 0.11
58 22 0.25
59 15 0.17
60 4 0.05
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (56 bp):
AAATTATATATTACTTATTAAATTATATTTAATAATAATTATATTAAAATACGATT
Found at i:7041120 original size:43 final size:43
Alignment explanation
Indices: 7041000--7041308 Score: 196
Period size: 43 Copynumber: 7.2 Consensus size: 43
7040990 AATATCAAGA
** * *
7041000 CTTTTAGCGGCGTTTGTGAGAAAAGCGCAGCTAAAAGTCATGG
1 CTTTTAGCAACGTTTGTGCGAAAAGCGCCGCTAAAAGTCATGG
*** * * *
7041043 -TTTGTAGTGTCATTTATGAGAAAAGCGCCGCTAAAAGTGC-TGG
1 CTTT-TAGCAACGTTTGTGCGAAAAGCGCCGCTAAAAGT-CATGG
* *
7041086 CTTTTAGCAACGTTTGTGAC-AAAAACGCCTCTAAAAGTCATGG
1 CTTTTAGCAACGTTTGTG-CGAAAAGCGCCGCTAAAAGTCATGG
** *
7041129 CTTTTAGCGGCGTTTGTGCGAAAAGCGCCGCTAAAAGTCATAG
1 CTTTTAGCAACGTTTGTGCGAAAAGCGCCGCTAAAAGTCATGG
*** ** * * *
7041172 CTTTTAGTGGCGTTTGTTG-GGGAAGTGCCACTAAAAGTCATGA
1 CTTTTAGCAACGTTTG-TGCGAAAAGCGCCGCTAAAAGTCATGG
*** * * * **
7041215 CTTTTAGCGGTGTTTGTGAGAAAAGCGCCGTTAAAAGCCATAA
1 CTTTTAGCAACGTTTGTGCGAAAAGCGCCGCTAAAAGTCATGG
*** * * **
7041258 CTTTTAGTGGCTCTTTTTG-GGGAAGCGCCGCTAAAAGTCATGG
1 CTTTTAGCAAC-GTTTGTGCGAAAAGCGCCGCTAAAAGTCATGG
7041301 CTTTTAGC
1 CTTTTAGC
7041309 GGCTTTTTTT
Statistics
Matches: 212, Mismatches: 45, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
42 7 0.03
43 194 0.92
44 11 0.05
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (43 bp):
CTTTTAGCAACGTTTGTGCGAAAAGCGCCGCTAAAAGTCATGG
Found at i:7041175 original size:86 final size:86
Alignment explanation
Indices: 7041000--7041311 Score: 310
Period size: 86 Copynumber: 3.6 Consensus size: 86
7040990 AATATCAAGA
* * * *
7041000 CTTTTAGCGGCGTTTGTGAGAAAAGCG-CAGCTAAAAGTCATGG-TTTGTAGTGTCATTTATGAG
1 CTTTTAGCGGCGTTTGTGAGAAAAGCGCCA-CTAAAAGTCATGGCTTT-TAGCGGCGTTTGTGAG
*
7041063 AAAAGCGCCGCTAAAAGTGC-TGG
64 AAAAGCGCCGCTAAAAGT-CATAG
** * * * *
7041086 CTTTTAGCAACGTTTGTGACAAAAACGCCTCTAAAAGTCATGGCTTTTAGCGGCGTTTGTGCGAA
1 CTTTTAGCGGCGTTTGTGAGAAAAGCGCCACTAAAAGTCATGGCTTTTAGCGGCGTTTGTGAGAA
7041151 AAGCGCCGCTAAAAGTCATAG
66 AAGCGCCGCTAAAAGTCATAG
* ** * * *
7041172 CTTTTAGTGGCGTTTGTTG-GGGAAGTGCCACTAAAAGTCATGACTTTTAGCGGTGTTTGTGAGA
1 CTTTTAGCGGCGTTTG-TGAGAAAAGCGCCACTAAAAGTCATGGCTTTTAGCGGCGTTTGTGAGA
* * *
7041236 AAAGCGCCGTTAAAAGCCATAA
65 AAAGCGCCGCTAAAAGTCATAG
* * * ** *
7041258 CTTTTAGTGGCTCTTTTTG-GGGAAGCGCCGCTAAAAGTCATGGCTTTTAGCGGC
1 CTTTTAGCGGC-GTTTGTGAGAAAAGCGCCACTAAAAGTCATGGCTTTTAGCGGC
7041312 TTTTTTTGGG
Statistics
Matches: 189, Mismatches: 32, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
85 1 0.01
86 179 0.95
87 9 0.05
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (86 bp):
CTTTTAGCGGCGTTTGTGAGAAAAGCGCCACTAAAAGTCATGGCTTTTAGCGGCGTTTGTGAGAA
AAGCGCCGCTAAAAGTCATAG
Found at i:7041207 original size:129 final size:126
Alignment explanation
Indices: 7040999--7041350 Score: 321
Period size: 129 Copynumber: 2.7 Consensus size: 126
7040989 AAATATCAAG
* * * * *
7040999 ACTTTTAGCGGCGTTTGTGAGAAAAGCGCAGCTAAAAGTCATGGTTTGTAGTGTCATTTATGAGA
1 ACTTTTAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAAGTCATGCTTT-TAGTGGCATTTTTG-GG
* * * *
7041064 AAAGCGCCGCTAAAAGTGC-TGGCTTTTAGCAACGTTTGTGACAAAAACGCC-TCTAAAAGTCAT
63 GAAGCGCCACTAAAAGT-CATGACTTTTAGCAACGTTTGTGACAAAAACGCCGT-TAAAAGCCAT
*
7041127 G
126 A
* *
7041128 GCTTTTAGCGGCGTTTGTGCGAAAAGCGCCGCTAAAAGTCATAGCTTTTAGTGGCGTTTGTTGGG
1 ACTTTTAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAAGTCAT-GCTTTTAGTGGCATTT-TTGGG
* *** * *
7041193 GAAGTGCCACTAAAAGTCATGACTTTTAGCGGTGTTTGTGAGAAAAGCGCCGTTAAAAGCCATA
63 GAAGCGCCACTAAAAGTCATGACTTTTAGCAACGTTTGTGACAAAAACGCCGTTAAAAGCCATA
* * * ** * *
7041257 ACTTTTAGTGGCTCTTTTTGGGGAAGCGCCGCTAAAAGTCATGGCTTTTAGCGGCTTTTTTTGGG
1 ACTTTTAGCGGC-GTTTGTGGAAAAGCGCCGCTAAAAGTCAT-GCTTTTAGTGGC-ATTTTTGGG
* ** * *
7041322 GAAGCTCCGTTAAAAGCCATAACTTTTAG
63 GAAGCGCCACTAAAAGTCATGACTTTTAG
7041351 TGGCGCTTTT
Statistics
Matches: 183, Mismatches: 34, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
128 1 0.01
129 167 0.91
130 15 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (126 bp):
ACTTTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAAGTCATGCTTTTAGTGGCATTTTTGGGGAA
GCGCCACTAAAAGTCATGACTTTTAGCAACGTTTGTGACAAAAACGCCGTTAAAAGCCATA
Found at i:7041318 original size:43 final size:43
Alignment explanation
Indices: 7041111--7041337 Score: 217
Period size: 43 Copynumber: 5.3 Consensus size: 43
7041101 GTGACAAAAA
* * **
7041111 CGCCTCTAAAAGTCATGGCTTTTAGCGGC-GTTTGTGCGAAAAG
1 CGCCGCTAAAAGTCATGGCTTTTAGCGGCTGTTTTTG-GGGAAG
* *
7041154 CGCCGCTAAAAGTCATAGCTTTTAGTGGC-GTTTGTTGGGGAAG
1 CGCCGCTAAAAGTCATGGCTTTTAGCGGCTGTTT-TTGGGGAAG
* * * * **
7041197 TGCCACTAAAAGTCATGACTTTTAGCGG-TGTTTGTGAGAAAAG
1 CGCCGCTAAAAGTCATGGCTTTTAGCGGCTGTTTTTG-GGGAAG
* * ** * *
7041240 CGCCGTTAAAAGCCATAACTTTTAGTGGCTCTTTTTGGGGAAG
1 CGCCGCTAAAAGTCATGGCTTTTAGCGGCTGTTTTTGGGGAAG
*
7041283 CGCCGCTAAAAGTCATGGCTTTTAGCGGCTTTTTTTGGGGAAG
1 CGCCGCTAAAAGTCATGGCTTTTAGCGGCTGTTTTTGGGGAAG
* *
7041326 CTCCGTTAAAAG
1 CGCCGCTAAAAG
7041338 CCATAACTTT
Statistics
Matches: 148, Mismatches: 32, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
42 2 0.01
43 138 0.93
44 8 0.05
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (43 bp):
CGCCGCTAAAAGTCATGGCTTTTAGCGGCTGTTTTTGGGGAAG
Done.