Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 124041150
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124041150
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 335 characters in sequence are not A, C, G, or T
File 270 of 410
Found at i:83433987 original size:31 final size:31
Alignment explanation
Indices: 83433952--83434053 Score: 107
Period size: 31 Copynumber: 3.1 Consensus size: 31
83433942 CCTTTTCATA
*
83433952 TTTCATATTTCATAATACTGGGCTGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
83433989 ATTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
83434021 TTTC-TAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAT-ATTTCATAATACTGGGCCGAAGCCT
83434052 TT
1 TT
83434054 ACTGCAAACG
Statistics
Matches: 61, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
30 1 0.02
31 30 0.49
32 1 0.02
33 1 0.02
37 1 0.02
38 27 0.44
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:83434335 original size:27 final size:27
Alignment explanation
Indices: 83434280--83434353 Score: 132
Period size: 27 Copynumber: 2.8 Consensus size: 27
83434270 TCTTTTTAAT
83434280 AACTGGGGCATAAGCCC-TTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTTCGGTA
83434306 AACTGGGGCATAAGCCCTTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTTCGGTA
*
83434333 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
83434354 GCACTTCCTC
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
26 17 0.37
27 29 0.63
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.28
Consensus pattern (27 bp):
AACTGGGGCATAAGCCCTTTTTCGGTA
Found at i:83434457 original size:20 final size:20
Alignment explanation
Indices: 83434402--83434468 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
83434392 TTATGAATAC
*
83434402 ATCATGTGCATATCACACAT
1 ATCATGTGCATATCATACAT
*
83434422 AACATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
83434442 ATCATGTGCATGTCATATCA-
1 ATCATGTGCATATCATA-CAT
83434462 ATCATGT
1 ATCATGT
83434469 ATATCAAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
20 40 0.95
21 2 0.05
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:83442120 original size:38 final size:38
Alignment explanation
Indices: 83442076--83442177 Score: 204
Period size: 38 Copynumber: 2.7 Consensus size: 38
83442066 ACATATACTA
83442076 GCCGAAGCCTTTTCATATTTCATATTTCATAATACTGG
1 GCCGAAGCCTTTTCATATTTCATATTTCATAATACTGG
83442114 GCCGAAGCCTTTTCATATTTCATATTTCATAATACTGG
1 GCCGAAGCCTTTTCATATTTCATATTTCATAATACTGG
83442152 GCCGAAGCCTTTTCATATTTCATATT
1 GCCGAAGCCTTTTCATATTTCATATT
83442178 ACTTGGCCGA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.25, C:0.22, G:0.13, T:0.40
Consensus pattern (38 bp):
GCCGAAGCCTTTTCATATTTCATATTTCATAATACTGG
Found at i:83442128 original size:31 final size:31
Alignment explanation
Indices: 83442093--83442194 Score: 123
Period size: 31 Copynumber: 3.1 Consensus size: 31
83442083 CCTTTTCATA
83442093 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
83442130 ATTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
* *
83442162 TTTCATATTTCATATTACTTGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
83442193 TT
1 TT
83442195 ACTGCAAACG
Statistics
Matches: 62, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
31 31 0.50
32 1 0.02
33 1 0.02
37 1 0.02
38 28 0.45
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:83442450 original size:26 final size:26
Alignment explanation
Indices: 83442421--83442493 Score: 137
Period size: 26 Copynumber: 2.8 Consensus size: 26
83442411 TCTTTTTAAT
83442421 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
83442447 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
83442473 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
83442494 GCACTTCCTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:83442569 original size:20 final size:20
Alignment explanation
Indices: 83442544--83442598 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
83442534 ATGAATACAT
*
83442544 CATGTGCATATCATACTTAA
1 CATGTGCATATCATACGTAA
* *
83442564 CATGTGCATATAATACGTAT
1 CATGTGCATATCATACGTAA
*
83442584 CATGTGCATGTCATA
1 CATGTGCATATCATA
83442599 TCAAACATGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.35
Consensus pattern (20 bp):
CATGTGCATATCATACGTAA
Found at i:83446461 original size:35 final size:35
Alignment explanation
Indices: 83446415--83446490 Score: 136
Period size: 35 Copynumber: 2.2 Consensus size: 35
83446405 ATGGTACTTC
83446415 TTATCGACTGACTCCAT-GATTAAGTAAATTGTGAA
1 TTATCGACTGACTCCATAG-TTAAGTAAATTGTGAA
83446450 TTATCGACTGACTCCATAGTTAAGTAAATTGTGAA
1 TTATCGACTGACTCCATAGTTAAGTAAATTGTGAA
83446485 TTATCG
1 TTATCG
83446491 GAACGATACT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
35 39 0.98
36 1 0.03
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (35 bp):
TTATCGACTGACTCCATAGTTAAGTAAATTGTGAA
Found at i:83447581 original size:6 final size:6
Alignment explanation
Indices: 83447570--83447673 Score: 58
Period size: 6 Copynumber: 17.3 Consensus size: 6
83447560 TTTTATTAGT
* * * *
83447570 TTAATA TTAATA TGAGATA TTAATT TTAAT- TTAATA TTCATCTA GATAATA
1 TTAATA TTAATA TTA-ATA TTAATA TTAATA TTAATA TT-A-ATA -TTAATA
* *
83447621 TT-TTA TTAAT- TTAATA TTAATA TGAAATA TTAA-A TTTAATA -TAATA
1 TTAATA TTAATA TTAATA TTAATA T-TAATA TTAATA -TTAATA TTAATA
83447667 -TAATA TT
1 TTAATA TT
83447674 TATACTATTT
Statistics
Matches: 76, Mismatches: 11, Indels: 22
0.70 0.10 0.20
Matches are distributed among these distances:
5 25 0.33
6 33 0.43
7 14 0.18
8 3 0.04
9 1 0.01
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (6 bp):
TTAATA
Found at i:83447598 original size:61 final size:61
Alignment explanation
Indices: 83447524--83447668 Score: 213
Period size: 61 Copynumber: 2.4 Consensus size: 61
83447514 TAATAAATTT
* *
83447524 AATATTTAATTTAATTTAATATAT-ATCTAGATAGTATTTTATTAGTTTAATATTAATATGA
1 AATA-TTAATTTAATTTAATATATCATCTAGATAATATTTTATTAATTTAATATTAATATGA
*
83447585 GATATTAATTTTAATTTAATAT-TCATCTAGATAATATTTTATTAATTTAATATTAATATGA
1 AATATTAA-TTTAATTTAATATATCATCTAGATAATATTTTATTAATTTAATATTAATATGA
*
83447646 AATATTAAATTTAATATAATATA
1 AATATT-AATTTAATTTAATATA
83447669 ATATTTATAC
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
60 5 0.07
61 68 0.91
62 2 0.03
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (61 bp):
AATATTAATTTAATTTAATATATCATCTAGATAATATTTTATTAATTTAATATTAATATGA
Found at i:83447638 original size:31 final size:30
Alignment explanation
Indices: 83447523--83447639 Score: 121
Period size: 31 Copynumber: 3.8 Consensus size: 30
83447513 TTAATAAATT
*
83447523 TAATATTTAATTTAATTTAATATATATCTAGA
1 TAATATTTTA-TTAATTTAATAT-TATCTAGA
* * *
83447555 TAGTATTTTATTAGTTTAATATTAATATGAGA
1 TAATATTTTATTAATTTAATATT-ATCT-AGA
* *
83447587 TATTA-ATT-TTAATTTAATATTCATCTAGA
1 TAATATTTTATTAATTTAATATT-ATCTAGA
83447616 TAATATTTTATTAATTTAATATTA
1 TAATATTTTATTAATTTAATATTA
83447640 ATATGAAATA
Statistics
Matches: 70, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
29 7 0.10
30 19 0.27
31 29 0.41
32 15 0.21
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (30 bp):
TAATATTTTATTAATTTAATATTATCTAGA
Found at i:83450565 original size:28 final size:29
Alignment explanation
Indices: 83450534--83450590 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
83450524 TAAAGAGGTT
*
83450534 TTTGACAAAAATGTCAATTAAGGA-TTAA
1 TTTGACAAAAATGTAAATTAAGGAGTTAA
* * *
83450562 TTTGAGAAAAGTGTAAATTGAGGAGTTAA
1 TTTGACAAAAATGTAAATTAAGGAGTTAA
83450591 ATTGTGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 20 0.83
29 4 0.17
ACGTcount: A:0.44, C:0.04, G:0.21, T:0.32
Consensus pattern (29 bp):
TTTGACAAAAATGTAAATTAAGGAGTTAA
Found at i:83450599 original size:29 final size:28
Alignment explanation
Indices: 83450535--83450599 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 28
83450525 AAAGAGGTTT
* * *
83450535 TTGACAAAAATGTCAATTAAGGATTAAT
1 TTGAGAAAAATGTAAATTAAGGATTAAA
* *
83450563 TTGAGAAAAGTGTAAATTGAGGAGTTAAA
1 TTGAGAAAAATGTAAATTAAGGA-TTAAA
*
83450592 TTGTGAAA
1 TTGAGAAA
83450600 TAAATGAAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 19 0.63
29 11 0.37
ACGTcount: A:0.45, C:0.03, G:0.22, T:0.31
Consensus pattern (28 bp):
TTGAGAAAAATGTAAATTAAGGATTAAA
Found at i:83454732 original size:30 final size:28
Alignment explanation
Indices: 83454691--83454775 Score: 98
Period size: 29 Copynumber: 2.9 Consensus size: 28
83454681 AAAAATCTTC
* * *
83454691 CAAACAACGAATAAATGCGATAAAATCA
1 CAAATAACGAATAATTGTGATAAAATCA
* *
83454719 CAAAATAACCGAATAATTGTGATAGAATTGA
1 C-AAATAA-CGAATAATTGTGATA-AAATCA
83454750 CAAATAACGAATAATTGTGATAAAAT
1 CAAATAACGAATAATTGTGATAAAAT
83454776 TGCCAGATCC
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
28 4 0.08
29 20 0.42
30 19 0.40
31 5 0.10
ACGTcount: A:0.53, C:0.12, G:0.13, T:0.22
Consensus pattern (28 bp):
CAAATAACGAATAATTGTGATAAAATCA
Found at i:83454764 original size:29 final size:30
Alignment explanation
Indices: 83454698--83454777 Score: 101
Period size: 30 Copynumber: 2.7 Consensus size: 30
83454688 TTCCAAACAA
* * *
83454698 CGAATAAATGCGATAAAA-TCACAAAATAAC
1 CGAATAATTGTGATAAAATTGAC-AAATAAC
*
83454728 CGAATAATTGTGATAGAATTGACAAATAA-
1 CGAATAATTGTGATAAAATTGACAAATAAC
83454757 CGAATAATTGTGATAAAATTG
1 CGAATAATTGTGATAAAATTG
83454778 CCAGATCCCC
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
29 20 0.45
30 21 0.48
31 3 0.07
ACGTcount: A:0.50, C:0.10, G:0.15, T:0.25
Consensus pattern (30 bp):
CGAATAATTGTGATAAAATTGACAAATAAC
Found at i:83454933 original size:39 final size:39
Alignment explanation
Indices: 83454877--83454954 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
83454867 CAACTATCAG
* *
83454877 AATAACCTACCCTAATGCACATGCAATATGTCATACAAT
1 AATAACCTACCCCAATGCACATGCAAGATGTCATACAAT
*
83454916 AATAACCTACCCCAATGCATATGCAAGATGTCATACAAT
1 AATAACCTACCCCAATGCACATGCAAGATGTCATACAAT
83454955 CTCATACATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.41, C:0.26, G:0.09, T:0.24
Consensus pattern (39 bp):
AATAACCTACCCCAATGCACATGCAAGATGTCATACAAT
Found at i:83465803 original size:3 final size:3
Alignment explanation
Indices: 83465795--83465836 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
83465785 CCTGACTTTC
83465795 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
83465837 TTAATTATCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:83468621 original size:13 final size:13
Alignment explanation
Indices: 83468605--83468637 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
83468595 TCGAGTTTGT
83468605 AATTATTAAATAA
1 AATTATTAAATAA
*
83468618 AATTATT-TATAA
1 AATTATTAAATAA
83468630 AATTATTA
1 AATTATTA
83468638 TGTAGATGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
AATTATTAAATAA
Found at i:83479541 original size:144 final size:144
Alignment explanation
Indices: 83479353--83479642 Score: 562
Period size: 144 Copynumber: 2.0 Consensus size: 144
83479343 TCAAGTCCAT
83479353 TTGGGGAGATGTTTTGTCTTGGTCATCTGAGTGGATGACTCCCAAAAGATGAAGACATAGATGTG
1 TTGGGGAGATGTTTTGTCTTGGTCATCTGAGTGGATGACTCCCAAAAGATGAAGACATAGATGTG
83479418 ACTGACTGGACTGATAGTACATCAGATTGGACCTAAAAAAACCAAAGATGAATAGATCCTAAATC
66 ACTGACTGGACTGATAGTACATCAGATTGGACCTAAAAAAACCAAAGATGAATAGATCCTAAATC
83479483 TGTTTATGGATTTA
131 TGTTTATGGATTTA
*
83479497 TTGGGGAGATGTTTTGTCTTTGTCATCTGAGTGGATGACTCCCAAAAGATGAAGACATAGATGTG
1 TTGGGGAGATGTTTTGTCTTGGTCATCTGAGTGGATGACTCCCAAAAGATGAAGACATAGATGTG
*
83479562 ACTGACTGGACTGATAGTACATCAGATTGGACCTAACAAAACCAAAGATGAATAGATCCTAAATC
66 ACTGACTGGACTGATAGTACATCAGATTGGACCTAAAAAAACCAAAGATGAATAGATCCTAAATC
83479627 TGTTTATGGATTTA
131 TGTTTATGGATTTA
83479641 TT
1 TT
83479643 CACTTGTTAT
Statistics
Matches: 144, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
144 144 1.00
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (144 bp):
TTGGGGAGATGTTTTGTCTTGGTCATCTGAGTGGATGACTCCCAAAAGATGAAGACATAGATGTG
ACTGACTGGACTGATAGTACATCAGATTGGACCTAAAAAAACCAAAGATGAATAGATCCTAAATC
TGTTTATGGATTTA
Found at i:83481825 original size:13 final size:13
Alignment explanation
Indices: 83481807--83481835 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
83481797 AATCGAGCCA
83481807 TACCCACTGATTC
1 TACCCACTGATTC
83481820 TACCCACTGATTC
1 TACCCACTGATTC
83481833 TAC
1 TAC
83481836 TGAAAGTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.24, C:0.38, G:0.07, T:0.31
Consensus pattern (13 bp):
TACCCACTGATTC
Found at i:83481918 original size:50 final size:50
Alignment explanation
Indices: 83481852--83481949 Score: 178
Period size: 50 Copynumber: 2.0 Consensus size: 50
83481842 TATGCTCAAT
83481852 TGAGTCATACCCATTGATTCTACTAAAAGTATGCTCAAACGAGCAATACG
1 TGAGTCATACCCATTGATTCTACTAAAAGTATGCTCAAACGAGCAATACG
* *
83481902 TGAGTCATATCTATTGATTCTACTAAAAGTATGCTCAAACGAGCAATA
1 TGAGTCATACCCATTGATTCTACTAAAAGTATGCTCAAACGAGCAATA
83481950 TGTATTGAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (50 bp):
TGAGTCATACCCATTGATTCTACTAAAAGTATGCTCAAACGAGCAATACG
Found at i:83481975 original size:37 final size:37
Alignment explanation
Indices: 83481933--83482056 Score: 131
Period size: 37 Copynumber: 3.3 Consensus size: 37
83481923 ACTAAAAGTA
* *
83481933 TGCTCAAACGAGCAATATGTATTGAATATACTGAATT
1 TGCTCAAACGAGCAATGTCTATTGAATATACTGAATT
* * *
83481970 TGCTCAAACGAGCAATGCCTACTGAATATACTGAATG
1 TGCTCAAACGAGCAATGTCTATTGAATATACTGAATT
* * * * *
83482007 AGCTCAAAAGAGAAATGTCTATTGATTATACTAAATGTT
1 TGCTCAAACGAGCAATGTCTATTGAATATACTGAA--TT
*
83482046 TGCTTAAACGA
1 TGCTCAAACGA
83482057 ACATTATCCA
Statistics
Matches: 69, Mismatches: 16, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
37 60 0.87
39 9 0.13
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (37 bp):
TGCTCAAACGAGCAATGTCTATTGAATATACTGAATT
Found at i:83489126 original size:22 final size:24
Alignment explanation
Indices: 83489099--83489150 Score: 63
Period size: 22 Copynumber: 2.2 Consensus size: 24
83489089 TTTTTTTAAT
83489099 TTTTAAAAAAATATTT-AT-ATTA
1 TTTTAAAAAAATATTTAATAATTA
***
83489121 TTTTAATTTAATATTTAATAATTA
1 TTTTAAAAAAATATTTAATAATTA
83489145 TTTTAA
1 TTTTAA
83489151 TTTATTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 13 0.52
23 2 0.08
24 10 0.40
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (24 bp):
TTTTAAAAAAATATTTAATAATTA
Found at i:83489164 original size:21 final size:23
Alignment explanation
Indices: 83489117--83489164 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 23
83489107 AAATATTTAT
* *
83489117 ATTATTTTAATTTAATATTTAATA
1 ATTATTTTAATTT-ATATTAAAAA
83489141 ATTATTTTAA-TT-TATTAAAAA
1 ATTATTTTAATTTATATTAAAAA
83489162 ATT
1 ATT
83489165 TATATAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 10 0.45
23 2 0.09
24 10 0.45
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (23 bp):
ATTATTTTAATTTATATTAAAAA
Found at i:83492502 original size:7 final size:7
Alignment explanation
Indices: 83492490--83492527 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
83492480 ATCGATTCAT
83492490 ATATATA
1 ATATATA
83492497 ATATAT-
1 ATATATA
83492503 AT-TA-A
1 ATATATA
83492508 ATATATA
1 ATATATA
83492515 ATATATA
1 ATATATA
83492522 ATATAT
1 ATATAT
83492528 GCATGTTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
5 4 0.14
6 4 0.14
7 20 0.71
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
ATATATA
Found at i:83492527 original size:9 final size:9
Alignment explanation
Indices: 83492488--83492521 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
83492478 AAATCGATTC
83492488 ATATATATA
1 ATATATATA
83492497 ATATATATTA
1 ATATATA-TA
83492507 A-ATATATA
1 ATATATATA
83492515 ATATATA
1 ATATATA
83492522 ATATATGCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 3 0.13
9 17 0.74
10 3 0.13
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
ATATATATA
Found at i:83499070 original size:16 final size:16
Alignment explanation
Indices: 83499049--83499079 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83499039 GTAACACCCT
83499049 AAAAATCCCGAAATCC
1 AAAAATCCCGAAATCC
*
83499065 AAAAATCTCGAAATC
1 AAAAATCCCGAAATC
83499080 TTGAATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.26, G:0.06, T:0.16
Consensus pattern (16 bp):
AAAAATCCCGAAATCC
Found at i:83500315 original size:8 final size:8
Alignment explanation
Indices: 83500289--83500346 Score: 55
Period size: 8 Copynumber: 7.4 Consensus size: 8
83500279 ATGAATCGGC
83500289 AAAAGCCG
1 AAAAGCCG
* *
83500297 AAATGCTG
1 AAAAGCCG
83500305 AAAAGCCG
1 AAAAGCCG
*
83500313 AAAAGTCG
1 AAAAGCCG
*
83500321 -AAAGTCG
1 AAAAGCCG
*
83500328 AAAGGCCG
1 AAAAGCCG
*
83500336 AAAAGCTG
1 AAAAGCCG
83500344 AAA
1 AAA
83500347 GTTGGGCTAC
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
7 7 0.17
8 33 0.82
ACGTcount: A:0.48, C:0.17, G:0.26, T:0.09
Consensus pattern (8 bp):
AAAAGCCG
Found at i:83500335 original size:23 final size:23
Alignment explanation
Indices: 83500304--83500348 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
83500294 CCGAAATGCT
83500304 GAAAAGCCGAAAAG-TCGAAAGTC
1 GAAAAGCCGAAAAGCT-GAAAGTC
*
83500327 GAAAGGCCGAAAAGCTGAAAGT
1 GAAAAGCCGAAAAGCTGAAAGT
83500349 TGGGCTACGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.47, C:0.16, G:0.29, T:0.09
Consensus pattern (23 bp):
GAAAAGCCGAAAAGCTGAAAGTC
Found at i:83500475 original size:19 final size:19
Alignment explanation
Indices: 83500443--83500480 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
83500433 ACTTGGGTTG
*
83500443 AGAATTGGCAAAATGGGCC
1 AGAATAGGCAAAATGGGCC
*
83500462 AGAATAGGCTAAATGGGCC
1 AGAATAGGCAAAATGGGCC
83500481 TAATGGGCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.16, G:0.32, T:0.16
Consensus pattern (19 bp):
AGAATAGGCAAAATGGGCC
Found at i:83502681 original size:19 final size:21
Alignment explanation
Indices: 83502657--83502695 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
83502647 TAAAGTTATG
83502657 AAAATTGAT-GAAAA-ATTTT
1 AAAATTGATAGAAAATATTTT
*
83502676 AAAATTTATAGAAAATATTT
1 AAAATTGATAGAAAATATTT
83502696 GTTGTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 5 0.29
21 4 0.24
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (21 bp):
AAAATTGATAGAAAATATTTT
Found at i:83512078 original size:33 final size:33
Alignment explanation
Indices: 83512028--83512093 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
83512018 CTCGGTGTCA
*
83512028 GAAACTCGTTTTCAGAATACCGAAATAGCGTTT
1 GAAACTCATTTTCAGAATACCGAAATAGCGTTT
*
83512061 GAAACTCATTTTTAGAATACCGAAATAGCGTTT
1 GAAACTCATTTTCAGAATACCGAAATAGCGTTT
83512094 AAGAATTAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.32
Consensus pattern (33 bp):
GAAACTCATTTTCAGAATACCGAAATAGCGTTT
Found at i:83514168 original size:15 final size:16
Alignment explanation
Indices: 83514148--83514219 Score: 78
Period size: 15 Copynumber: 4.5 Consensus size: 16
83514138 TCTTGCTCTC
83514148 CCTTTCTTC-TTCTTT
1 CCTTTCTTCTTTCTTT
83514163 CCTTTC-TCTTTCTTT
1 CCTTTCTTCTTTCTTT
*
83514178 TCTTTCTTTCCTTTCTTT
1 CCTTTC-TT-CTTTCTTT
*
83514196 CTTTTC-TCTTTCTTT
1 CCTTTCTTCTTTCTTT
83514211 CCCTTTCTT
1 -CCTTTCTT
83514220 TCCCTCGTCC
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
14 2 0.04
15 25 0.53
16 6 0.13
17 2 0.04
18 12 0.26
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (16 bp):
CCTTTCTTCTTTCTTT
Found at i:83514189 original size:24 final size:23
Alignment explanation
Indices: 83514154--83514220 Score: 88
Period size: 22 Copynumber: 3.0 Consensus size: 23
83514144 TCTCCCTTTC
83514154 TTCTTCTTTCCTTTCTCTTTCTT
1 TTCTTCTTTCCTTTCTCTTTCTT
83514177 TTCTTTCTTTCC-TT-TCTTTCTT
1 TTC-TTCTTTCCTTTCTCTTTCTT
*
83514199 TTC-TCTTT-CTTTCCCTTTCTT
1 TTCTTCTTTCCTTTCTCTTTCTT
83514220 T
1 T
83514221 CCCTCGTCCT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
19 1 0.03
20 7 0.17
21 8 0.20
22 11 0.28
23 5 0.12
24 8 0.20
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (23 bp):
TTCTTCTTTCCTTTCTCTTTCTT
Found at i:83514237 original size:4 final size:4
Alignment explanation
Indices: 83514149--83514221 Score: 57
Period size: 4 Copynumber: 18.2 Consensus size: 4
83514139 CTTGCTCTCC
83514149 CTTT C-TT C-TT CTTT CCTTT C--T CTTT CTTTT CTTT CTTT CCTTT CTTT
1 CTTT CTTT CTTT CTTT -CTTT CTTT CTTT C-TTT CTTT CTTT -CTTT CTTT
*
83514196 CTTT -TCT CTTT CTTT CCCTTT CTTT C
1 CTTT CTTT CTTT CTTT --CTTT CTTT C
83514222 CCTCGTCCTC
Statistics
Matches: 58, Mismatches: 2, Indels: 18
0.74 0.03 0.23
Matches are distributed among these distances:
2 2 0.03
3 8 0.14
4 32 0.55
5 12 0.21
6 4 0.07
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (4 bp):
CTTT
Found at i:83514424 original size:17 final size:18
Alignment explanation
Indices: 83514386--83514426 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
83514376 CTCATTACTC
* *
83514386 TTTTATTCTTATTATTTA
1 TTTTATTCTAATTATCTA
83514404 -TTTATT-TAATTATCTA
1 TTTTATTCTAATTATCTA
83514420 TTTTATT
1 TTTTATT
83514427 ATCCATTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTATTCTAATTATCTA
Found at i:83516652 original size:36 final size:36
Alignment explanation
Indices: 83516612--83516684 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
83516602 TCAAGCATGA
*
83516612 TAAGTTGACTTTTGAGAATTAAAATTGCTAGGTTGT
1 TAAGTTAACTTTTGAGAATTAAAATTGCTAGGTTGT
83516648 TAAGTTAACTTTTGAGAATTAAAATTGCTAGGTTGT
1 TAAGTTAACTTTTGAGAATTAAAATTGCTAGGTTGT
83516684 T
1 T
83516685 TACTTGAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.32, C:0.05, G:0.21, T:0.42
Consensus pattern (36 bp):
TAAGTTAACTTTTGAGAATTAAAATTGCTAGGTTGT
Found at i:83518922 original size:92 final size:93
Alignment explanation
Indices: 83518753--83518922 Score: 272
Period size: 92 Copynumber: 1.8 Consensus size: 93
83518743 GGATGGTTGA
*
83518753 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAGT
*
83518818 TAAGTTCGAGTTCGTGAGATGTAACTAG
66 TAAGTCCGAGTTCGTGAGATGTAACTAG
* *
83518846 GCATCCGAACT-GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCAGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCC-GAACTCGTTGAG
*
83518909 TTGAGTCCGAGTTC
65 TTAAGTCCGAGTTC
83518923 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
91 2 0.03
92 58 0.82
93 11 0.15
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAGT
TAAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:83518925 original size:46 final size:45
Alignment explanation
Indices: 83518757--83518927 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 45
83518747 GGTTGAGCAT
* *
83518757 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * *
83518802 TCCGAACTCGTTGAGTTAAGTTCGAGTTC-GTGA--GATG-TAACTAGG
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
83518847 CATCCGAACT-GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 ---CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
83518894 CCAGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
83518928 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 13, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 6 0.06
46 69 0.68
47 11 0.11
49 4 0.04
50 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:83525243 original size:40 final size:40
Alignment explanation
Indices: 83525051--83525236 Score: 205
Period size: 40 Copynumber: 4.7 Consensus size: 40
83525041 TCGAATGATG
* * * *
83525051 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGCCCCGAAGGCATTTGTGC-GAGTTACTAAA
* ** * *
83525091 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAG
1 TCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTAAA
* **
83525131 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
83525171 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
83525212 -CCGGGCTATGCCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCCGAAGGCATTTG
83525237 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
40 119 0.94
41 8 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:83525243 original size:80 final size:79
Alignment explanation
Indices: 83525104--83525259 Score: 190
Period size: 80 Copynumber: 2.0 Consensus size: 79
83525094 GGACTAAGAT
* * **
83525104 CCGAAGGCATTCGTGCGAGTTACTAAGTCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTCGTGCGAGTTACTAAGACCGGACTAAGACCCGAAGGCATTTGAACGAG-TAGCT
83525168 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* * * *
83525184 CCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTATGCCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTCGTGCGAGTTACTA-AGACCGGACTAAGACCCGAAGGCATTTGAACGAGTAGCT
*
83525248 ATATCCGGTTAA
65 AAATCCGGTTAA
83525260 ACTCCGAAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
79 8 0.12
80 56 0.86
81 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTTACTAAGACCGGACTAAGACCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:83532566 original size:38 final size:39
Alignment explanation
Indices: 83532484--83532665 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
83532474 AATGTTCGAG
83532484 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
83532523 TGATATCCGGGCTAAGCCCGAAGGCAATTG-GCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
83532561 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
83532600 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
83532640 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
83532666 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 38 0.30
39 50 0.40
40 38 0.30
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:83535906 original size:31 final size:32
Alignment explanation
Indices: 83535871--83535947 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 32
83535861 ATGATGCTAG
* *
83535871 AGATATTTTGA-TATTTTATAATTA-TTTAATT
1 AGATATTTT-ATTATTTTATAAATATTTTAATA
**
83535902 AGATA-AATATTATTTTATAAATATTTTAATA
1 AGATATTTTATTATTTTATAAATATTTTAATA
83535933 AGATATTTTATTATT
1 AGATATTTTATTATT
83535948 ATTTTATTAG
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
29 1 0.03
30 13 0.35
31 16 0.43
32 7 0.19
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (32 bp):
AGATATTTTATTATTTTATAAATATTTTAATA
Found at i:83535926 original size:11 final size:11
Alignment explanation
Indices: 83535912--83535954 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
83535902 AGATAAATAT
83535912 TATTTTATAAA
1 TATTTTATAAA
83535923 TATTTTAATAAGA
1 TATTTT-ATAA-A
* *
83535936 TATTTTATTAT
1 TATTTTATAAA
83535947 TATTTTAT
1 TATTTTAT
83535955 TAGTATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 14 0.50
12 7 0.25
13 7 0.25
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (11 bp):
TATTTTATAAA
Found at i:83538137 original size:46 final size:46
Alignment explanation
Indices: 83538085--83538222 Score: 240
Period size: 46 Copynumber: 3.0 Consensus size: 46
83538075 AGTGTGCTCT
83538085 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
83538131 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
83538177 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
83538223 ATGTCAAAGA
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 88 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:83540000 original size:27 final size:28
Alignment explanation
Indices: 83539943--83540012 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
83539933 AAACTTGTAC
*
83539943 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
83539971 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
83539998 AGCACTAGGTGTGCG
1 AGCACTAAGTGTGCG
83540013 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:83544777 original size:30 final size:30
Alignment explanation
Indices: 83544743--83544802 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
83544733 TATAAGACTT
83544743 AGACAAAATTGCACCATTCATAGAAGCATC
1 AGACAAAATTGCACCATTCATAGAAGCATC
83544773 AGACAAAATTGCACCATTCATAGAAGCATC
1 AGACAAAATTGCACCATTCATAGAAGCATC
83544803 TGTCATCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.23, G:0.13, T:0.20
Consensus pattern (30 bp):
AGACAAAATTGCACCATTCATAGAAGCATC
Found at i:83551223 original size:38 final size:39
Alignment explanation
Indices: 83551141--83551322 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
83551131 AATGTTCGAG
83551141 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
83551180 TGATATCCGGGCTAAGCCCGAAGGCAATTG-GCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
83551218 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
83551257 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
83551297 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
83551323 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 38 0.30
39 50 0.40
40 38 0.30
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:83557585 original size:40 final size:40
Alignment explanation
Indices: 83557461--83557612 Score: 159
Period size: 40 Copynumber: 3.8 Consensus size: 40
83557451 GGGCTAAGTC
* *
83557461 CCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT
1 CCGAAGGCATTTGTGC-GAGTTACTATATCCGGACTAAGAT
* *
83557501 CCGACGGCATTCGTGCGAGTTACTA-AGTCCGGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTATA-TCCGGACTAAGAT
* * *
83557541 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATG-T
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGAT
**
83557580 CCCGAAGGCATTTGAACGAG-TAGCTATATCCGG
1 -CCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
83557613 TTAAACTCCG
Statistics
Matches: 95, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
39 4 0.04
40 84 0.88
41 7 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGAT
Found at i:83559418 original size:48 final size:48
Alignment explanation
Indices: 83559347--83559471 Score: 144
Period size: 48 Copynumber: 2.6 Consensus size: 48
83559337 TCCACATATT
* * * * * * *
83559347 GATGCCATATCCCAAATATGGTCTTATACAAAG-TCTCATGTCAGTGTC
1 GATGCCATGTCCCAGACATGGTCTTACAC-AAGCTCACATATCAATGTC
**
83559395 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCACATATCAATGTC
*
83559443 GATGCCATGTCCCAGACATGCTCTTACAC
1 GATGCCATGTCCCAGACATGGTCTTACAC
83559472 TAGATCTCAT
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
47 1 0.02
48 65 0.98
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACAAGCTCACATATCAATGTC
Found at i:83566180 original size:25 final size:25
Alignment explanation
Indices: 83566147--83566199 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
83566137 CAAACTTCAT
83566147 TTTGGTAGTTTTGAAAGTGTAAATA
1 TTTGGTAGTTTTGAAAGTGTAAATA
*
83566172 TTTGGTAGTTTTGAAAGTGTAACTA
1 TTTGGTAGTTTTGAAAGTGTAAATA
83566197 TTT
1 TTT
83566200 TTAAGTATGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.28, C:0.02, G:0.23, T:0.47
Consensus pattern (25 bp):
TTTGGTAGTTTTGAAAGTGTAAATA
Found at i:83569614 original size:27 final size:27
Alignment explanation
Indices: 83569566--83569669 Score: 131
Period size: 27 Copynumber: 3.9 Consensus size: 27
83569556 GTGAGGCTGC
* * *
83569566 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
*
83569593 CAGATATTGTGGTAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
83569619 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
83569646 CAGATAATTGTGGCATAGCCACCA
1 CAGAT-ATTGTGGCAGAGCCACCA
83569670 AGACGCTTCC
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
26 8 0.12
27 58 0.85
28 2 0.03
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:83574503 original size:31 final size:32
Alignment explanation
Indices: 83574468--83574544 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 32
83574458 ATGATGCTAG
* *
83574468 AGATATTTTGA-TATTTTATAATTA-TTTAATT
1 AGATATTTT-ATTATTTTATAAATATTTTAATA
**
83574499 AGATA-AATATTATTTTATAAATATTTTAATA
1 AGATATTTTATTATTTTATAAATATTTTAATA
83574530 AGATATTTTATTATT
1 AGATATTTTATTATT
83574545 ATTTTATTAG
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
29 1 0.03
30 13 0.35
31 16 0.43
32 7 0.19
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (32 bp):
AGATATTTTATTATTTTATAAATATTTTAATA
Found at i:83574523 original size:11 final size:11
Alignment explanation
Indices: 83574509--83574551 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
83574499 AGATAAATAT
83574509 TATTTTATAAA
1 TATTTTATAAA
83574520 TATTTTAATAAGA
1 TATTTT-ATAA-A
* *
83574533 TATTTTATTAT
1 TATTTTATAAA
83574544 TATTTTAT
1 TATTTTAT
83574552 TAGTATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 14 0.50
12 7 0.25
13 7 0.25
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (11 bp):
TATTTTATAAA
Found at i:83576737 original size:46 final size:46
Alignment explanation
Indices: 83576685--83576822 Score: 231
Period size: 46 Copynumber: 3.0 Consensus size: 46
83576675 AGTGTGCTCT
83576685 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
83576731 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
83576777 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACAATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
83576823 ATGTCAAAGA
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 87 1.00
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:83578599 original size:27 final size:28
Alignment explanation
Indices: 83578542--83578611 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
83578532 AAACTTGTAC
*
83578542 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
83578570 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
83578597 AGCACTAGGTGTGCG
1 AGCACTAAGTGTGCG
83578612 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:83587154 original size:27 final size:26
Alignment explanation
Indices: 83587076--83587154 Score: 60
Period size: 24 Copynumber: 3.2 Consensus size: 26
83587066 GAAACTCGCA
83587076 CCAAAGTGCCAATATCATGACCCAAAG
1 CCAAAGTGCCAATATCATG-CCCAAAG
* * * * *
83587103 CC-AACT--CAATGT-AT-CTCACAC
1 CCAAAGTGCCAATATCATGCCCAAAG
83587124 CCAAAGTGCCAATATCATGGCCCAAAG
1 CCAAAGTGCCAATATCAT-GCCCAAAG
83587151 CCAA
1 CCAA
83587155 CTAAATCTCA
Statistics
Matches: 36, Mismatches: 10, Indels: 12
0.62 0.17 0.21
Matches are distributed among these distances:
21 6 0.17
22 3 0.08
23 2 0.06
24 10 0.28
25 2 0.06
26 3 0.08
27 10 0.28
ACGTcount: A:0.38, C:0.33, G:0.13, T:0.16
Consensus pattern (26 bp):
CCAAAGTGCCAATATCATGCCCAAAG
Found at i:83596692 original size:43 final size:42
Alignment explanation
Indices: 83596551--83596706 Score: 138
Period size: 43 Copynumber: 3.6 Consensus size: 42
83596541 ATATTGTACA
* * *
83596551 ATGCCAACGTCCTAGACGTGGTCTTACAT-GTAATCACATGTCG
1 ATGCCAACGTCCCAGACATGGTCTTAC-TCG-AATCACATATCG
* * *
83596594 ATGCC-ACTATCCCAGACAGGGTCTTACACGAATCACA-ATTACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACTCGAATCACATA-T-CG
***
83596637 ATGCCTTTGTCCCAGACATGGTCTTACTCGAAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACTCG-AATCACATATCG
**
83596680 ATGCCAACGTCCCAGATGTGGTCTTAC
1 ATGCCAACGTCCCAGACATGGTCTTAC
83596707 ACAAGAACAC
Statistics
Matches: 90, Mismatches: 16, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
42 10 0.11
43 71 0.79
44 8 0.09
45 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACTCGAATCACATATCG
Found at i:83609221 original size:30 final size:29
Alignment explanation
Indices: 83609183--83609244 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 29
83609173 TAATTCAACA
83609183 ATTTCATTACTATGTGTTTAATATTTGAT
1 ATTTCATTACTATGTGTTTAATATTTGAT
83609212 ATTTCCATTACTATGTGTTTAATATTTGAT
1 ATTT-CATTACTATGTGTTTAATATTTGAT
83609242 ATT
1 ATT
83609245 ACAAGATACA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 4 0.12
30 28 0.88
ACGTcount: A:0.27, C:0.08, G:0.10, T:0.55
Consensus pattern (29 bp):
ATTTCATTACTATGTGTTTAATATTTGAT
Found at i:83609464 original size:48 final size:48
Alignment explanation
Indices: 83609393--83609568 Score: 255
Period size: 48 Copynumber: 3.7 Consensus size: 48
83609383 TGAGATCCAC
*
83609393 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAGCCAG
1 TGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGAGCCAG
* * *
83609441 TGTAAAACCATGTCT-GGAACATGGCATCGACGTTGATATGTGAGCCAG
1 TGTAAGACCATGTCTAGG-ACATGGCATCGGCATTGATATGTGAGCCAG
* * * * *
83609489 TGTAAGATCATATCTAGGACATGACATCGGCATTGATATGTGTGCTAG
1 TGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGAGCCAG
83609537 TGTAAGACCATGTCTAGGACATGGCATCGGCA
1 TGTAAGACCATGTCTAGGACATGGCATCGGCA
83609569 CTAACATGAG
Statistics
Matches: 112, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
47 2 0.02
48 108 0.96
49 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGAGCCAG
Found at i:83609598 original size:96 final size:96
Alignment explanation
Indices: 83609382--83609579 Score: 245
Period size: 96 Copynumber: 2.1 Consensus size: 96
83609372 ACCGTGAGTA
* * * * *
83609382 ATGAGATCCACTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGAGCCAGTGTAAA
1 ATGAGAGCCAGTGTAAGACCATATCTAGGACATGACATCGGCATTGATATGTGAGCCAGTGTAAA
** * *
83609447 ACCATGTCTGGAACATGGCATCGACGTTGAT
66 ACCATGTCTGGAACATGGCATCGACACTAAC
* * * * *
83609478 ATGTGAGCCAGTGTAAGATCATATCTAGGACATGACATCGGCATTGATATGTGTGCTAGTGTAAG
1 ATGAGAGCCAGTGTAAGACCATATCTAGGACATGACATCGGCATTGATATGTGAGCCAGTGTAAA
*
83609543 ACCATGTCTAGG-ACATGGCATCGGCACTAAC
66 ACCATGTCT-GGAACATGGCATCGACACTAAC
83609574 ATGAGA
1 ATGAGA
83609580 CTTCATAGAA
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
96 83 0.98
97 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (96 bp):
ATGAGAGCCAGTGTAAGACCATATCTAGGACATGACATCGGCATTGATATGTGAGCCAGTGTAAA
ACCATGTCTGGAACATGGCATCGACACTAAC
Found at i:83620063 original size:49 final size:49
Alignment explanation
Indices: 83620006--83620294 Score: 537
Period size: 49 Copynumber: 5.9 Consensus size: 49
83619996 ATGTATGAGA
83620006 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
83620055 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
83620104 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
83620153 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
83620202 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--G
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
83620249 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
83620295 TATATGTGTG
Statistics
Matches: 236, Mismatches: 4, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
47 45 0.19
49 191 0.81
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:83620066 original size:27 final size:27
Alignment explanation
Indices: 83620035--83620117 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
83620025 CTAATGGCCG
83620035 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* *** ***
83620062 ATGTGAT-AAGGCCTAA-TG-GCCGA-
1 ATGTGATGAATGTGAAAGTGTGTATAT
83620085 -TGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
83620111 ATGTGAT
1 ATGTGAT
83620118 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:83620360 original size:48 final size:47
Alignment explanation
Indices: 83620286--83620485 Score: 285
Period size: 48 Copynumber: 4.2 Consensus size: 47
83620276 CGATGTGATG
* * * *
83620286 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAA-ATATATATGATATGTATATGTGGTAAAGCCGAATGGCT
*
83620334 AATGTGAAACATATATAAGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAA-ATATATATGATATGTATATGTGGTAAAGCCGAATGGCT
83620382 AATGTG-AAATATATGAGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAAATATAT-A-TGATATGTATATGTGGTAAAGCCGAATGGCT
* *
83620430 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAA-ATATATATGATATGTATATGTGGTAAAGCCGAATGGCT
83620478 AATGTGAA
1 AATGTGAA
83620486 TGTTGTAACA
Statistics
Matches: 139, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
46 6 0.04
47 3 0.02
48 123 0.88
49 2 0.01
50 5 0.04
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (47 bp):
AATGTGAAAATATATATGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:83620386 original size:96 final size:96
Alignment explanation
Indices: 83620286--83620485 Score: 337
Period size: 96 Copynumber: 2.1 Consensus size: 96
83620276 CGATGTGATG
* *
83620286 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATA
1 AATGTGAAATATATGAGTGATATGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATA
83620351 AGATATGTATATGTGGTAAAGCCGAATGGCT
66 AGATATGTATATGTGGTAAAGCCGAATGGCT
* * * *
83620382 AATGTGAAATATATGAGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
1 AATGTGAAATATATGAGTGATATGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATA
*
83620447 TGATATGTATATGTGGTAAAGCCGAATGGCT
66 AGATATGTATATGTGGTAAAGCCGAATGGCT
83620478 AATGTGAA
1 AATGTGAA
83620486 TGTTGTAACA
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 97 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (96 bp):
AATGTGAAATATATGAGTGATATGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATA
AGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:83620579 original size:37 final size:37
Alignment explanation
Indices: 83620525--83620652 Score: 229
Period size: 37 Copynumber: 3.4 Consensus size: 37
83620515 AACTTGGAAA
*
83620525 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
83620563 TATGTCCGGGTAAGACCTGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
83620600 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
83620637 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
83620653 TTCGTAATAA
Statistics
Matches: 87, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
37 83 0.95
38 4 0.05
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:83622643 original size:24 final size:24
Alignment explanation
Indices: 83622611--83622673 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
83622601 AATCTCAAAT
83622611 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
83622635 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
83622659 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
83622674 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:83630735 original size:57 final size:57
Alignment explanation
Indices: 83630670--83630807 Score: 213
Period size: 57 Copynumber: 2.4 Consensus size: 57
83630660 ATACAATTAA
* * ** *
83630670 GATTTAGCCTGGACTAGTAATCTTAATTAAGCTCTTCTGACCATATGTTACATAAAG
1 GATTTAGCCTGGACTGGTAATCCTAATTAAGCTCTTCTGACCATACATTACACAAAG
*
83630727 GATTTAGCCTGGACTGGTAATCCTAATTAAGCTCTTCTGAGCATACATTACACAAAG
1 GATTTAGCCTGGACTGGTAATCCTAATTAAGCTCTTCTGACCATACATTACACAAAG
*
83630784 GATTTAGCCTAGACTGGTAATCCT
1 GATTTAGCCTGGACTGGTAATCCT
83630808 GAAATTCGAT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 74 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (57 bp):
GATTTAGCCTGGACTGGTAATCCTAATTAAGCTCTTCTGACCATACATTACACAAAG
Found at i:83631662 original size:13 final size:13
Alignment explanation
Indices: 83631644--83631669 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83631634 GGCACACGAG
83631644 CATGTGTCTAGAC
1 CATGTGTCTAGAC
83631657 CATGTGTCTAGAC
1 CATGTGTCTAGAC
83631670 GGTATGGTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
CATGTGTCTAGAC
Found at i:83640605 original size:19 final size:20
Alignment explanation
Indices: 83640564--83640611 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 20
83640554 ACTAAAATGT
*
83640564 AAAATTGTGAAAATTGATGA
1 AAAATTGTGAAAATTGATAA
* *
83640584 AAAATTTTG-AAATTTATAA
1 AAAATTGTGAAAATTGATAA
*
83640603 AAAAATGTG
1 AAAATTGTG
83640612 TTGCAAATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.52, C:0.00, G:0.15, T:0.33
Consensus pattern (20 bp):
AAAATTGTGAAAATTGATAA
Found at i:83641338 original size:57 final size:57
Alignment explanation
Indices: 83641202--83641339 Score: 224
Period size: 57 Copynumber: 2.4 Consensus size: 57
83641192 TGATACAATT
* *
83641202 AGGATTTAGCCT-GCACTGGCAATCCTAATTAAGCTCTTCTGAGCATACGTTACATAA
1 AGGATTTAGCCTAG-ACTGGTAATCCTAATTAAGCTCTTCTAAGCATACGTTACATAA
* *
83641259 AGGATTTAGCCTAGACTAGTAATCCTAATTAAGCTCTTTTAAGCATACGTTACATAA
1 AGGATTTAGCCTAGACTGGTAATCCTAATTAAGCTCTTCTAAGCATACGTTACATAA
83641316 AGGATTTAGCCTAGACTGGTAATC
1 AGGATTTAGCCTAGACTGGTAATC
83641340 TTGAAATTTC
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
57 74 0.99
58 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (57 bp):
AGGATTTAGCCTAGACTGGTAATCCTAATTAAGCTCTTCTAAGCATACGTTACATAA
Found at i:83642403 original size:113 final size:113
Alignment explanation
Indices: 83642205--83642436 Score: 376
Period size: 113 Copynumber: 2.1 Consensus size: 113
83642195 CATGGGCAGA
* * * * *
83642205 CACACGGGCGTGTGTCTAGATCGTGTGTGACACACAGTCTAGTACATGGTCGTGTGGTTAGGCCG
1 CACACGAGCATGTGTCTAGATCGTGTGTGACACACAGTATAGTACATGGGCATGTGGTTAGGCCG
*
83642270 TGTGTCCCCTACACCTTAAATTTGAGAAACAGAATGCTAAGAATTGAG
66 TGTGTCCCCTACACCTTAAATTTGAGAAACAGAATGCAAAGAATTGAG
*
83642318 CACACGAGCATGTGTCTAGA-CTGTGTGTGACACACAGTATGGTACATGGGCATGTGGTTAGGCC
1 CACACGAGCATGTGTCTAGATC-GTGTGTGACACACAGTATAGTACATGGGCATGTGGTTAGGCC
*
83642382 GTGTGTCCCCTACACCTTAAATTTGAGAAATAGAATGCAAAGAATTGAG
65 GTGTGTCCCCTACACCTTAAATTTGAGAAACAGAATGCAAAGAATTGAG
83642431 CACACG
1 CACACG
83642437 GATAGAAACA
Statistics
Matches: 110, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
112 1 0.01
113 109 0.99
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (113 bp):
CACACGAGCATGTGTCTAGATCGTGTGTGACACACAGTATAGTACATGGGCATGTGGTTAGGCCG
TGTGTCCCCTACACCTTAAATTTGAGAAACAGAATGCAAAGAATTGAG
Found at i:83643076 original size:36 final size:35
Alignment explanation
Indices: 83643036--83643105 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
83643026 TGTGAAAGAG
** *
83643036 AATATATGGGTATGTTATTCATGCCATGTGACAGTA
1 AATATATCAGTATGTT-TTCATACCATGTGACAGTA
*
83643072 AATATGTCAGTATGTTTTCATACCATGTGACAGT
1 AATATATCAGTATGTTTTCATACCATGTGACAGT
83643106 GATTATAATG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
35 17 0.57
36 13 0.43
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (35 bp):
AATATATCAGTATGTTTTCATACCATGTGACAGTA
Found at i:83646018 original size:20 final size:20
Alignment explanation
Indices: 83645995--83646106 Score: 66
Period size: 20 Copynumber: 5.5 Consensus size: 20
83645985 ACTTCGGTAT
**
83645995 CCCTGTTTGCACTTTGGTGC
1 CCCTGTTTGCACTTCAGTGC
* *
83646015 CCCT-TTATACACTTCAGTGT
1 CCCTGTT-TGCACTTCAGTGC
** * * * *
83646035 CTTTATTTGCGCTACGGTGC
1 CCCTGTTTGCACTTCAGTGC
*
83646055 CCCTGTTTGCACGTT-TGTGC
1 CCCTGTTTGCAC-TTCAGTGC
* *
83646075 CCCTATCTGCACTTCAGTGC
1 CCCTGTTTGCACTTCAGTGC
83646095 CCCTGTTATGCA
1 CCCTGTT-TGCA
83646107 TCTATGATGC
Statistics
Matches: 65, Mismatches: 22, Indels: 9
0.68 0.23 0.09
Matches are distributed among these distances:
19 4 0.06
20 54 0.83
21 7 0.11
ACGTcount: A:0.12, C:0.31, G:0.20, T:0.38
Consensus pattern (20 bp):
CCCTGTTTGCACTTCAGTGC
Found at i:83647632 original size:98 final size:98
Alignment explanation
Indices: 83647470--83647708 Score: 345
Period size: 98 Copynumber: 2.4 Consensus size: 98
83647460 CGTGGCACAA
* * * * *
83647470 AGCCATCGATAACAGGTCTATAATC-AGCACGAAGCCCACAATATCGATATGAAGCCCACAATAA
1 AGCCATTGATAACGGGTCTATAATCGA-CATGAAGCCTACAATATCGATACGAAGCCCACAATAA
** * *
83647534 CGGCACACAGCCTTCGGTAACATGATCGGCACTT
65 CGGCACACAGCCTTCACTAACATGATCAGCACTC
*
83647568 AGCCATTGATAACGGGTCTATAATCGACATGAAGCCTACAATATCGGTACGAAGCCCACAATAAC
1 AGCCATTGATAACGGGTCTATAATCGACATGAAGCCTACAATATCGATACGAAGCCCACAATAAC
83647633 GGCACACAGCCTTCACTAACATGATCAGCACTC
66 GGCACACAGCCTTCACTAACATGATCAGCACTC
* * *
83647666 AGCCATTGATAACGGGTATATAATTGGCATGAAGCCTACAATA
1 AGCCATTGATAACGGGTCTATAATCGACATGAAGCCTACAATA
83647709 ACGGCACATA
Statistics
Matches: 127, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
98 126 0.99
99 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.20
Consensus pattern (98 bp):
AGCCATTGATAACGGGTCTATAATCGACATGAAGCCTACAATATCGATACGAAGCCCACAATAAC
GGCACACAGCCTTCACTAACATGATCAGCACTC
Found at i:83647815 original size:26 final size:27
Alignment explanation
Indices: 83647775--83647837 Score: 101
Period size: 27 Copynumber: 2.3 Consensus size: 27
83647765 TAGACAAAGT
83647775 CACCAGATACAGATA-TTGTGGCAGAGC
1 CACCAGA-ACAGATATTTGTGGCAGAGC
*
83647802 CACCAGAACAGATATTTGTGGCATAGC
1 CACCAGAACAGATATTTGTGGCAGAGC
83647829 CACCAGAAC
1 CACCAGAAC
83647838 GCTTCCTCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
26 7 0.21
27 27 0.79
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.17
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGAGC
Found at i:83648091 original size:27 final size:27
Alignment explanation
Indices: 83648061--83648367 Score: 263
Period size: 27 Copynumber: 11.0 Consensus size: 27
83648051 GGGGTAAAAT
* * * *
83648061 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
83648088 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
83648115 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
83648142 GGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
83648169 GGTAGAATTCAGTAATTCTACCCTACAGGGGTATTTC
1 ----G------GTAATTCTACCCTACAGGGGTATTTC
* * *
83648206 AGTAATTCTACCCTACAGAGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
83648233 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
83648260 GGTATTTTTACTCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
83648287 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *
83648314 GGTATTTCTACCTTACAAGGCTATTTA
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
83648341 AGTAATTTTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
83648368 AATAATTTTG
Statistics
Matches: 231, Mismatches: 39, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
27 206 0.89
31 1 0.00
37 24 0.10
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:83648229 original size:64 final size:64
Alignment explanation
Indices: 83648112--83648231 Score: 186
Period size: 64 Copynumber: 1.9 Consensus size: 64
83648102 ACAGGGGTAT
* * * * *
83648112 TTCAATAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTCGGTAGAA
1 TTCAATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGAGGTATTTCGGTAGAA
*
83648176 TTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGAGGTATTT
1 TTCAATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGAGGTATTT
83648232 TAGTAATTCT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 50 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (64 bp):
TTCAATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGAGGTATTTCGGTAGAA
Found at i:83648244 original size:91 final size:91
Alignment explanation
Indices: 83648089--83648263 Score: 296
Period size: 91 Copynumber: 1.9 Consensus size: 91
83648079 GGGTATCTCG
* * *
83648089 GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGAGGTATTTCAGTAATTCTACC
*
83648154 TTATAGGGGTATTTCGGTAGAATTCA
66 CTATAGGGGTATTTCGGTAGAATTCA
* *
83648180 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGAGGTATTTTAGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGAGGTATTTCAGTAATTCTACC
83648245 CTATAGGGGTATTTCGGTA
66 CTATAGGGGTATTTCGGTA
83648264 TTTTTACTCT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
91 78 1.00
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.36
Consensus pattern (91 bp):
GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGAGGTATTTCAGTAATTCTACC
CTATAGGGGTATTTCGGTAGAATTCA
Found at i:83648400 original size:27 final size:27
Alignment explanation
Indices: 83648370--83648444 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
83648360 GGTATTTCAA
83648370 TAATTTTGTAAATCGAGGGTAAAATGG
1 TAATTTTGTAAATCGAGGGTAAAATGG
* ***
83648397 TAATTCTGTAAATCGAGGGTACTTTGG
1 TAATTTTGTAAATCGAGGGTAAAATGG
** *
83648424 TAATTTTACAAGTCGAGGGTA
1 TAATTTTGTAAATCGAGGGTA
83648445 TTTTAGTAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.32, C:0.08, G:0.25, T:0.35
Consensus pattern (27 bp):
TAATTTTGTAAATCGAGGGTAAAATGG
Found at i:83648445 original size:81 final size:81
Alignment explanation
Indices: 83648359--83648551 Score: 203
Period size: 81 Copynumber: 2.4 Consensus size: 81
83648349 TACCCTACAG
* ** * *
83648359 AGGTATTTCAATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAA-TCGAGGGTACTTT-
1 AGGTATTTCAGTAATTTTACAAATCGAGGGTAAAATAGTAATTCTGCAAACT-GAGGGTA-TTTC
*
83648422 GGTAATTTTACAAGTCGA
64 GGTAATTTTACAAATCGA
* * * *** * *
83648440 GGGTATTTTAGTAATTTTACAAATTGAGGGTATTTTAGTAATTTTGCAAACTGAGGGTATTTCTG
1 AGGTATTTCAGTAATTTTACAAATCGAGGGTAAAATAGTAATTCTGCAAACTGAGGGTATTTCGG
*
83648505 TAATTTTACAAATTGA
66 TAATTTTACAAATCGA
*
83648521 AGGTATTTCAGTAATTTTAC-AATCGACGGTA
1 AGGTATTTCAGTAATTTTACAAATCGAGGGTA
83648552 TTTCGGTAAT
Statistics
Matches: 91, Mismatches: 19, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
80 12 0.13
81 78 0.86
82 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (81 bp):
AGGTATTTCAGTAATTTTACAAATCGAGGGTAAAATAGTAATTCTGCAAACTGAGGGTATTTCGG
TAATTTTACAAATCGA
Found at i:83648453 original size:27 final size:26
Alignment explanation
Indices: 83648380--83648700 Score: 247
Period size: 27 Copynumber: 12.1 Consensus size: 26
83648370 TAATTTTGTA
***
83648380 AATCGAGGGTAAAATGGTAATTCTGTA-
1 AATCGAGGGTATTTTGGTAATT-T-TAC
*
83648407 AATCGAGGGTACTTTGGTAATTTTAC
1 AATCGAGGGTATTTTGGTAATTTTAC
*
83648433 AAGTCGAGGGTATTTTAGTAATTTTAC
1 AA-TCGAGGGTATTTTGGTAATTTTAC
* * *
83648460 AAATTGAGGGTATTTTAGTAATTTTGC
1 -AATCGAGGGTATTTTGGTAATTTTAC
*
83648487 AAACTGAGGGTATTTCT-GTAATTTTAC
1 AATC-GAGGGTATTT-TGGTAATTTTAC
* * **
83648514 AAATTGAAGGTATTTCAGTAATTTTAC
1 -AATCGAGGGTATTTTGGTAATTTTAC
* *
83648541 AATCGACGGTATTTCGGTAATTTTAC
1 AATCGAGGGTATTTTGGTAATTTTAC
* *
83648567 AAATCGAGGATATTTGGGTAATTTATA-
1 -AATCGAGGGTATTTTGGTAATTT-TAC
* * *
83648594 AA-CTGGGGGTACTTTGGTAATTTTGC
1 AATC-GAGGGTATTTTGGTAATTTTAC
* * *
83648620 AAACTGAGGGTATTTCGATAATTTTAC
1 AATC-GAGGGTATTTTGGTAATTTTAC
* *
83648647 AATCGACGGTATTTTGG-AATTTTATA
1 AATCGAGGGTATTTTGGTAATTTTA-C
* * *
83648673 AACCGGGGGTACTTTGGTAATTTTAC
1 AATCGAGGGTATTTTGGTAATTTTAC
83648699 AA
1 AA
83648701 CTGGGGGTAT
Statistics
Matches: 240, Mismatches: 40, Indels: 29
0.78 0.13 0.09
Matches are distributed among these distances:
25 11 0.05
26 72 0.30
27 150 0.62
28 7 0.03
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (26 bp):
AATCGAGGGTATTTTGGTAATTTTAC
Found at i:83648581 original size:53 final size:53
Alignment explanation
Indices: 83648406--83648722 Score: 256
Period size: 53 Copynumber: 6.0 Consensus size: 53
83648396 GTAATTCTGT
* **
83648406 AAATCGAGGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-TCGAGGGTATTTCGGTAATTTTAC
* * * * *
83648460 AAATTGAGGGTATTTTAGTAATTTTGCAAACTGAGGGTATTTCTGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAATC-GAGGGTATTTCGGTAATTTTAC
* * *
83648514 AAATTGAAGGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGGTAATTTTAC
* ** * *
83648567 AAATCGAGGATATTTGGGTAATTTATA-AA-CTGGGGGTACTTT-GGTAATTTTGC
1 AAATCGAGGGTATTTCAGTAATTT-TACAATC-GAGGGTA-TTTCGGTAATTTTAC
* * *
83648620 AAA-CTGAGGGTATTTC-GATAATTTTACAATCGACGGTATTTTGG-AATTTTAT
1 AAATC-GAGGGTATTTCAG-TAATTTTACAATCGAGGGTATTTCGGTAATTTTAC
* * * * **
83648672 AAACCGGGGGTACTTT-GGTAATTTTACAA-CTGGGGGTATTTCATTAATTTT
1 AAATCGAGGGTA-TTTCAGTAATTTTACAATC-GAGGGTATTTCGGTAATTTT
83648723 GTAAACTAAA
Statistics
Matches: 216, Mismatches: 32, Indels: 31
0.77 0.11 0.11
Matches are distributed among these distances:
51 1 0.00
52 42 0.19
53 98 0.45
54 75 0.35
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (53 bp):
AAATCGAGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGGTAATTTTAC
Found at i:83651188 original size:98 final size:98
Alignment explanation
Indices: 83651026--83651256 Score: 345
Period size: 98 Copynumber: 2.4 Consensus size: 98
83651016 AAAGCCATCG
* * *
83651026 ATAACGGGTCTATAATCGGCACGAAGCCCACAATATTGATACGAAGCCCACAATAACTACACACA
1 ATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACGAAGCCCACAATAACGACACACA
83651091 ACCTTCAGTAACATGATCGACACCCAGCCATTA
66 ACCTTCAGTAACATGATCGACACCCAGCCATTA
**
83651124 ATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACGAAGCCCACAATAACGGTACACA
1 ATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACGAAGCCCACAATAACGACACACA
* * * * *
83651189 GCCTTCAGTAACATGATTGGCACTCAGCCATTG
66 ACCTTCAGTAACATGATCGACACCCAGCCATTA
** *
83651222 ATAATAGGTCTATAATTGGCACGAAGCCTACAATA
1 ATAACGGGTCTATAATCGGCACGAAGCCTACAATA
83651257 ACGACACACA
Statistics
Matches: 120, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
98 120 1.00
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.20
Consensus pattern (98 bp):
ATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACGAAGCCCACAATAACGACACACA
ACCTTCAGTAACATGATCGACACCCAGCCATTA
Found at i:83651386 original size:27 final size:26
Alignment explanation
Indices: 83651307--83651389 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 26
83651297 TCGATCGGTC
* * * * *
83651307 AACAGATATTATGACAAAGTCACCAAA
1 AACAGATATTGTGGCAGAGCCACC-AG
83651334 AACAGATATTGTGGCAGAGCCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
* *
83651360 AACAGATATTTTGGGCATAGCCACCAG
1 AACAGATATTGT-GGCAGAGCCACCAG
83651387 AAC
1 AAC
83651390 GCTTCCTCCA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 12 0.25
27 36 0.75
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.18
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:83651643 original size:27 final size:27
Alignment explanation
Indices: 83651613--83651946 Score: 227
Period size: 27 Copynumber: 12.0 Consensus size: 27
83651603 GGGGTAAAAT
* * *
83651613 GGTAATTTTACCTCACAAGGGTATCTC
1 GGTAATTCTACCTCACAGGGGTATTTC
83651640 GGTAATTCTACC-CTACAGGGGTATTTC
1 GGTAATTCTACCTC-ACAGGGGTATTTC
* * *
83651667 AGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCTCACAGGGGTATTTC
* *
83651694 GGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCTCACAGGGGTATTTC
*
83651721 GGTAGAATTCAGTAATTCTACCCTACAGGGGTATTTC
1 GGT--AATTC--T-A--C--CTC-ACAGGGGTATTTC
* *
83651758 AGTAATTCAACCAT-ACAGGGGTATTTC
1 GGTAATTCTACC-TCACAGGGGTATTTC
* *
83651785 AGTAATTCAACCAT-ACAGGGGTATTTC
1 GGTAATTCTACC-TCACAGGGGTATTTC
* *
83651812 AGTAATTCTACCAT-ACAGGGGTATGTC
1 GGTAATTCTACC-TCACAGGGGTATTTC
**
83651839 GGT-ATTCCTACC-CTACAAAGGTATTTC
1 GGTAATT-CTACCTC-ACAGGGGTATTTC
* *
83651866 GGTATTTCTACC-CTACAAGGGTATTTC
1 GGTAATTCTACCTC-ACAGGGGTATTTC
* * * *
83651893 GGTATTTCTACC-CTACAAGGCTATTTA
1 GGTAATTCTACCTC-ACAGGGGTATTTC
83651920 GGTAATTCTACC-CTACAGGGGTATTTC
1 GGTAATTCTACCTC-ACAGGGGTATTTC
83651947 AATAATTTTG
Statistics
Matches: 263, Mismatches: 27, Indels: 34
0.81 0.08 0.10
Matches are distributed among these distances:
26 4 0.02
27 226 0.86
28 3 0.01
29 5 0.02
30 1 0.00
31 1 0.00
32 2 0.01
34 1 0.00
35 5 0.02
36 1 0.00
37 14 0.05
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCTCACAGGGGTATTTC
Found at i:83651805 original size:91 final size:91
Alignment explanation
Indices: 83651641--83651811 Score: 279
Period size: 91 Copynumber: 1.9 Consensus size: 91
83651631 GGGTATCTCG
* * * * *
83651641 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTATAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCAACCATACAGGGGTATTTCAGTAATTCAACC
* *
83651706 TTATAGGGGTATTTCGGTAGAATTCA
66 ATACAGGGGTATTTCGGTAGAATTCA
83651732 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCAACCATACAGGGGTATTTCAGTAATTCAACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCAACCATACAGGGGTATTTCAGTAATTCAACC
83651797 ATACAGGGGTATTTC
66 ATACAGGGGTATTTC
83651812 AGTAATTCTA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
91 73 1.00
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (91 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTCAACCATACAGGGGTATTTCAGTAATTCAACC
ATACAGGGGTATTTCGGTAGAATTCA
Found at i:83651822 original size:118 final size:118
Alignment explanation
Indices: 83651614--83651842 Score: 325
Period size: 118 Copynumber: 1.9 Consensus size: 118
83651604 GGGTAAAATG
* * * * *
83651614 GTAATTTTACCTCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
1 GTAATTCTACCTCACAAGGGTATCTCAGTAATTCAACCATACAGGGGTATTTCAGTAATTCAACC
* * * * * *
83651679 TTATAGGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTCGGTAGAATTCA
66 ATACAGGGGTATTTCAGTAATTCTACCATACAGGGGTATGTCGGTAGAATTCA
* *
83651732 GTAATTCTACC-CTACAGGGGTATTTCAGTAATTCAACCATACAGGGGTATTTCAGTAATTCAAC
1 GTAATTCTACCTC-ACAAGGGTATCTCAGTAATTCAACCATACAGGGGTATTTCAGTAATTCAAC
83651796 CATACAGGGGTATTTCAGTAATTCTACCATACAGGGGTATGTCGGTA
65 CATACAGGGGTATTTCAGTAATTCTACCATACAGGGGTATGTCGGTA
83651843 TTCCTACCCT
Statistics
Matches: 97, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
117 1 0.01
118 96 0.99
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34
Consensus pattern (118 bp):
GTAATTCTACCTCACAAGGGTATCTCAGTAATTCAACCATACAGGGGTATTTCAGTAATTCAACC
ATACAGGGGTATTTCAGTAATTCTACCATACAGGGGTATGTCGGTAGAATTCA
Found at i:83651952 original size:27 final size:27
Alignment explanation
Indices: 83651728--83651953 Score: 267
Period size: 27 Copynumber: 8.4 Consensus size: 27
83651718 TTCGGTAGAA
83651728 TTCAGTAATTCTACCCTACAGGGGTAT
1 TTCAGTAATTCTACCCTACAGGGGTAT
* *
83651755 TTCAGTAATTCAACCATACAGGGGTAT
1 TTCAGTAATTCTACCCTACAGGGGTAT
* *
83651782 TTCAGTAATTCAACCATACAGGGGTAT
1 TTCAGTAATTCTACCCTACAGGGGTAT
*
83651809 TTCAGTAATTCTACCATACAGGGGTAT
1 TTCAGTAATTCTACCCTACAGGGGTAT
* * **
83651836 GTCGGT-ATTCCTACCCTACAAAGGTAT
1 TTCAGTAATT-CTACCCTACAGGGGTAT
* * *
83651863 TTCGGTATTTCTACCCTACAAGGGTAT
1 TTCAGTAATTCTACCCTACAGGGGTAT
* * * *
83651890 TTCGGTATTTCTACCCTACAAGGCTAT
1 TTCAGTAATTCTACCCTACAGGGGTAT
83651917 TT-AGGTAATTCTACCCTACAGGGGTAT
1 TTCA-GTAATTCTACCCTACAGGGGTAT
*
83651944 TTCAATAATT
1 TTCAGTAATT
83651954 TTGTAAATCG
Statistics
Matches: 178, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.02
27 172 0.97
28 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (27 bp):
TTCAGTAATTCTACCCTACAGGGGTAT
Found at i:83652031 original size:27 final size:27
Alignment explanation
Indices: 83652001--83652364 Score: 411
Period size: 27 Copynumber: 13.6 Consensus size: 27
83651991 GGGTACTGTG
*
83652001 GTAATTTTACAAGTCGAGGGTATTTTA
1 GTAATTTTACAAATCGAGGGTATTTTA
*
83652028 GTAATTTTACAAATTGAGGGTATTTTA
1 GTAATTTTACAAATCGAGGGTATTTTA
**
83652055 GTAATTTTGTAAA-CTGAGGGTATTTT-
1 GTAATTTTACAAATC-GAGGGTATTTTA
* *
83652081 GATAATTTTACAAATCAAGGGTATTTCA
1 G-TAATTTTACAAATCGAGGGTATTTTA
* **
83652109 GTAATTTTAC-AATCGATGGTATTTCG
1 GTAATTTTACAAATCGAGGGTATTTTA
* *
83652135 GTAATTTTACAAATTGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTTA
* *
83652162 GTAATTTTAC-AATCGACGGTA-TTTC
1 GTAATTTTACAAATCGAGGGTATTTTA
* * **
83652187 GATAATTTTACAAATCAAGGATATTTGG
1 G-TAATTTTACAAATCGAGGGTATTTTA
* * * *
83652215 GTAATTTTATAAACCG-GGGTACTTTG
1 GTAATTTTACAAATCGAGGGTATTTTA
*
83652241 GTAATTTTACAAGTCGAGGGTATTTTA
1 GTAATTTTACAAATCGAGGGTATTTTA
*
83652268 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTTA
* *
83652295 GTAATTTTGCAAA-CTGAGGGTATTTCA
1 GTAATTTTACAAATC-GAGGGTATTTTA
83652322 GTAATTTTACAAATCGAGGGTATTTTA
1 GTAATTTTACAAATCGAGGGTATTTTA
83652349 GTAATTTTAC-AATCGA
1 GTAATTTTACAAATCGA
83652365 CGGTTGTCAC
Statistics
Matches: 286, Mismatches: 40, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
25 3 0.01
26 69 0.24
27 208 0.73
28 6 0.02
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAGGGTATTTTA
Found at i:83652074 original size:54 final size:54
Alignment explanation
Indices: 83652001--83652364 Score: 370
Period size: 53 Copynumber: 6.8 Consensus size: 54
83651991 GGGTACTGTG
* * *
83652001 GTAATTTTAC-AAGTCGAGGGTATTTTAGTAATTTTACAAATTGAGGGTATTTTA
1 GTAATTTTACAAACT-GAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTCA
** *
83652055 GTAATTTTGTAAACTGAGGGTATTTT-GATAATTTTACAAATCAAGGGTATTTCA
1 GTAATTTTACAAACTGAGGGTATTTTAG-TAATTTTACAAATCGAGGGTATTTCA
* * ** *
83652109 GTAATTTTACAATC-GATGGTATTTCGGTAATTTTACAAATTGAGGGTATTTCA
1 GTAATTTTACAAACTGAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTCA
* * * * * **
83652162 GTAATTTTACAATC-GACGGTA-TTTCGATAATTTTACAAATCAAGGATATTTGG
1 GTAATTTTACAAACTGAGGGTATTTTAG-TAATTTTACAAATCGAGGGTATTTCA
* * * * * *
83652215 GTAATTTTATAAACCG-GGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTA
1 GTAATTTTACAAACTGAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTCA
* *
83652268 GTAATTTTACAAA-TCGAGGGTATTTCAGTAATTTTGCAAA-CTGAGGGTATTTCA
1 GTAATTTTACAAACT-GAGGGTATTTTAGTAATTTTACAAATC-GAGGGTATTTCA
83652322 GTAATTTTACAAA-TCGAGGGTATTTTAGTAATTTTAC-AATCGA
1 GTAATTTTACAAACT-GAGGGTATTTTAGTAATTTTACAAATCGA
83652365 CGGTTGTCAC
Statistics
Matches: 260, Mismatches: 40, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
52 3 0.01
53 130 0.50
54 124 0.48
55 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
GTAATTTTACAAACTGAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTCA
Found at i:83654090 original size:40 final size:41
Alignment explanation
Indices: 83654001--83654150 Score: 221
Period size: 41 Copynumber: 3.7 Consensus size: 41
83653991 CGCTGACTCA
* *
83654001 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
83654042 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
83654082 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
83654123 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
83654151 TAAACCCCGA
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 32 0.34
41 62 0.66
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:83658113 original size:2 final size:2
Alignment explanation
Indices: 83658106--83658142 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
83658096 TCGATCGGAG
83658106 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
83658143 GAGTACGCAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:83658210 original size:29 final size:29
Alignment explanation
Indices: 83658176--83658336 Score: 103
Period size: 29 Copynumber: 5.6 Consensus size: 29
83658166 TACTTGATTT
* * *
83658176 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
83658205 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
83658234 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
83658263 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
83658292 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
83658321 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
83658337 ATCTCGTCAC
Statistics
Matches: 118, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
29 118 1.00
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:83658268 original size:58 final size:59
Alignment explanation
Indices: 83658175--83658336 Score: 204
Period size: 58 Copynumber: 2.8 Consensus size: 59
83658165 ATACTTGATT
** * ** * * *
83658175 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
* *
83658233 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
83658292 T-GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
83658337 ATCTCGTCAC
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
57 4 0.04
58 87 0.95
59 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
Found at i:83664651 original size:29 final size:29
Alignment explanation
Indices: 83664618--83664749 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
83664608 GTGACGAGAT
83664618 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
83664647 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
83664676 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
83664705 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
83664734 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
83664750 GGCTTAAATC
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:83671275 original size:19 final size:18
Alignment explanation
Indices: 83671250--83671297 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 18
83671240 AAAGAAATGA
*
83671250 AAAAAAAAAAGAGAATATG
1 AAAAAAAAAAGAGAA-AAG
*
83671269 AAGAAAAACAA-AGAAAAG
1 AA-AAAAAAAAGAGAAAAG
83671287 AAAAAAAAAAG
1 AAAAAAAAAAG
83671298 TGTTCATTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
17 7 0.29
18 4 0.17
19 6 0.25
20 7 0.29
ACGTcount: A:0.79, C:0.02, G:0.15, T:0.04
Consensus pattern (18 bp):
AAAAAAAAAAGAGAAAAG
Found at i:83672548 original size:29 final size:29
Alignment explanation
Indices: 83672447--83672540 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
83672437 GTGACGAGAT
83672447 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
83672476 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
83672505 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
83672534 CGGCACT
1 TGGCACT
83672541 GGGTGTGCGA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:83672565 original size:58 final size:58
Alignment explanation
Indices: 83672443--83672577 Score: 166
Period size: 58 Copynumber: 2.3 Consensus size: 58
83672433 TACGGTGACG
* * *
83672443 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
83672500 ATATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
83672558 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
83672578 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
57 3 0.05
58 62 0.94
59 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:83675453 original size:40 final size:40
Alignment explanation
Indices: 83675345--83675554 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
83675335 CGGGATTTAA
* * * * *
83675345 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
83675385 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83675425 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83675465 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83675505 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83675545 CCGGATATAT
1 CCGGATATAT
83675555 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:83683588 original size:40 final size:40
Alignment explanation
Indices: 83683480--83683689 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
83683470 CGGGATTTAA
* * * * *
83683480 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
83683520 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83683560 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83683600 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83683640 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
83683680 CCGGATATAT
1 CCGGATATAT
83683690 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:83686603 original size:53 final size:53
Alignment explanation
Indices: 83686522--83686624 Score: 179
Period size: 53 Copynumber: 1.9 Consensus size: 53
83686512 ACACATTTTT
*
83686522 GTTTCTCCAGAATGAAAAGTAAAAGAACTATCGTGAGCTTTGCGAAGTATTTC
1 GTTTCTCCAGAATGAAAAGCAAAAGAACTATCGTGAGCTTTGCGAAGTATTTC
* *
83686575 GTTTCTCCAGAATGCAAAGCAAACGAACTATCGTGAGCTTTGCGAAGTAT
1 GTTTCTCCAGAATGAAAAGCAAAAGAACTATCGTGAGCTTTGCGAAGTAT
83686625 CAACTCTTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (53 bp):
GTTTCTCCAGAATGAAAAGCAAAAGAACTATCGTGAGCTTTGCGAAGTATTTC
Found at i:83687765 original size:55 final size:55
Alignment explanation
Indices: 83687691--83687801 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
83687681 GTTGAAAAGT
83687691 ATGATTCATGAGATCCATGAATGTCGCAGAAGTGTTAGTCAACCCAAAAGGCATC
1 ATGATTCATGAGATCCATGAATGTCGCAGAAGTGTTAGTCAACCCAAAAGGCATC
83687746 ATGATTCATGAGATCCATGAATGTCGCAGAAGTGTTAGTCAACCCAAAAGGCATC
1 ATGATTCATGAGATCCATGAATGTCGCAGAAGTGTTAGTCAACCCAAAAGGCATC
83687801 A
1 A
83687802 CAAAAAATTC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (55 bp):
ATGATTCATGAGATCCATGAATGTCGCAGAAGTGTTAGTCAACCCAAAAGGCATC
Found at i:83694097 original size:36 final size:36
Alignment explanation
Indices: 83694048--83694118 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
83694038 GTACTGATAT
* *
83694048 GGTTGCACAGGTCGCATAAGAAGATTGTGGACCTAA
1 GGTTGCACAGGTCGCACAAGAAGACTGTGGACCTAA
* *
83694084 GGTTGCACGGGTCGCACAAGACGACTGTGGACCTA
1 GGTTGCACAGGTCGCACAAGAAGACTGTGGACCTA
83694119 CTGATGGCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.27, C:0.21, G:0.32, T:0.20
Consensus pattern (36 bp):
GGTTGCACAGGTCGCACAAGAAGACTGTGGACCTAA
Found at i:83694143 original size:20 final size:20
Alignment explanation
Indices: 83694120--83694268 Score: 217
Period size: 20 Copynumber: 7.5 Consensus size: 20
83694110 GTGGACCTAC
*
83694120 TGATGGCTTTGTGCCGCTAT
1 TGATGGCTTTGTGCCACTAT
83694140 TGATGGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCACTAT
**
83694160 TGACAGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCACTAT
* *
83694180 TGATGGCTTTGTGCTACTAC
1 TGATGGCTTTGTGCCACTAT
* *
83694200 TGATGGCTTTGTACCGCTAT
1 TGATGGCTTTGTGCCACTAT
*
83694220 TGATGGCTTTGTGGCACTAT
1 TGATGGCTTTGTGCCACTAT
*
83694240 TGATGGCTTTGTGCCGCTAT
1 TGATGGCTTTGTGCCACTAT
83694260 TGATGGCTT
1 TGATGGCTT
83694269 CGTGTTGCTA
Statistics
Matches: 113, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 113 1.00
ACGTcount: A:0.14, C:0.19, G:0.27, T:0.40
Consensus pattern (20 bp):
TGATGGCTTTGTGCCACTAT
Found at i:83694278 original size:20 final size:20
Alignment explanation
Indices: 83694120--83694294 Score: 215
Period size: 20 Copynumber: 8.8 Consensus size: 20
83694110 GTGGACCTAC
83694120 TGATGGCTTTGTGCCGCTAT
1 TGATGGCTTTGTGCCGCTAT
*
83694140 TGATGGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCGCTAT
** *
83694160 TGACAGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCGCTAT
** *
83694180 TGATGGCTTTGTGCTACTAC
1 TGATGGCTTTGTGCCGCTAT
*
83694200 TGATGGCTTTGTACCGCTAT
1 TGATGGCTTTGTGCCGCTAT
* *
83694220 TGATGGCTTTGTGGCACTAT
1 TGATGGCTTTGTGCCGCTAT
83694240 TGATGGCTTTGTGCCGCTAT
1 TGATGGCTTTGTGCCGCTAT
* ** *
83694260 TGATGGCTTCGTGTTGCTAC
1 TGATGGCTTTGTGCCGCTAT
*
83694280 TCATGGCTTTGTGCC
1 TGATGGCTTTGTGCC
83694295 ATATACTGAT
Statistics
Matches: 131, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 131 1.00
ACGTcount: A:0.13, C:0.21, G:0.27, T:0.39
Consensus pattern (20 bp):
TGATGGCTTTGTGCCGCTAT
Found at i:83694286 original size:40 final size:40
Alignment explanation
Indices: 83694116--83694294 Score: 241
Period size: 40 Copynumber: 4.5 Consensus size: 40
83694106 GACTGTGGAC
83694116 CTACTGATGGCTTTGTGCCGCTATTGATGGCTTTGTGCCA
1 CTACTGATGGCTTTGTGCCGCTATTGATGGCTTTGTGCCA
* ** * *
83694156 CTATTGACAGCTTTGTGCCACTATTGATGGCTTTGTGCTA
1 CTACTGATGGCTTTGTGCCGCTATTGATGGCTTTGTGCCA
* *
83694196 CTACTGATGGCTTTGTACCGCTATTGATGGCTTTGTGGCA
1 CTACTGATGGCTTTGTGCCGCTATTGATGGCTTTGTGCCA
* * ***
83694236 CTATTGATGGCTTTGTGCCGCTATTGATGGCTTCGTGTTG
1 CTACTGATGGCTTTGTGCCGCTATTGATGGCTTTGTGCCA
*
83694276 CTACTCATGGCTTTGTGCC
1 CTACTGATGGCTTTGTGCC
83694295 ATATACTGAT
Statistics
Matches: 119, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 119 1.00
ACGTcount: A:0.13, C:0.21, G:0.26, T:0.39
Consensus pattern (40 bp):
CTACTGATGGCTTTGTGCCGCTATTGATGGCTTTGTGCCA
Found at i:83694338 original size:26 final size:27
Alignment explanation
Indices: 83694285--83694344 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 27
83694275 GCTACTCATG
*
83694285 GCTTTGTGCCATATACTGATACTGGCA
1 GCTTTGTGCCATATACTGATACTAGCA
*
83694312 GCTTTGCTG-CAT-TACTGTTACTAGCA
1 GCTTTG-TGCCATATACTGATACTAGCA
83694338 GCTTTGT
1 GCTTTGT
83694345 TACGATATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 1 0.03
26 18 0.60
27 9 0.30
28 2 0.07
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (27 bp):
GCTTTGTGCCATATACTGATACTAGCA
Found at i:83702992 original size:40 final size:40
Alignment explanation
Indices: 83702933--83703153 Score: 347
Period size: 40 Copynumber: 5.5 Consensus size: 40
83702923 CATTTGAATG
*
83702933 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
83702973 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
83703013 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
83703053 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
83703093 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
83703133 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
83703154 AAACTTGGGT
Statistics
Matches: 169, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.07
40 156 0.92
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:83711108 original size:40 final size:40
Alignment explanation
Indices: 83710998--83711217 Score: 338
Period size: 40 Copynumber: 5.5 Consensus size: 40
83710988 CATTTGAATG
*
83710998 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
83711038 ATATCCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
83711077 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
83711117 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
83711157 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
83711197 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
83711218 AAACTTGGGT
Statistics
Matches: 167, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 51 0.31
40 115 0.69
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:83711180 original size:80 final size:80
Alignment explanation
Indices: 83710998--83711217 Score: 338
Period size: 79 Copynumber: 2.8 Consensus size: 80
83710988 CATTTGAATG
*
83710998 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGA-CCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
*
83711062 TTTGTGCGAGTTGTT
66 TTTGTGCGAGTTGCT
83711077 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
83711142 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * * * * *
83711157 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGA-CCCGAAG
83711218 AAACTTGGGT
Statistics
Matches: 131, Mismatches: 8, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
78 1 0.01
79 67 0.51
80 63 0.48
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:83716683 original size:39 final size:39
Alignment explanation
Indices: 83716629--83716724 Score: 131
Period size: 39 Copynumber: 2.5 Consensus size: 39
83716619 GGATGATAAC
* * *
83716629 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
1 CGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
83716668 CGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTAGCTATAT
1 CGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTAGCTATAT
* *
83716707 CCGGCTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
83716725 TACTTGGTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
38 2 0.04
39 49 0.96
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTAGCTATAT
Found at i:83724505 original size:40 final size:40
Alignment explanation
Indices: 83724450--83724633 Score: 264
Period size: 40 Copynumber: 4.6 Consensus size: 40
83724440 TTCGAATTAA
* *
83724450 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
83724490 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
83724530 CCGGGCTAAGTCCCAAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
83724570 CCGGGCTAAGTCCCGAAGGCAGTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
83724610 CC-GGCTAAATCCCGAAGGTATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
83724634 GTTTGGGAAT
Statistics
Matches: 131, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 21 0.16
40 110 0.84
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:83726235 original size:42 final size:42
Alignment explanation
Indices: 83726114--83726268 Score: 195
Period size: 42 Copynumber: 3.7 Consensus size: 42
83726104 TACCGTACCA
* ** * *
83726114 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACACATAATCTCATATCG
* * * *
83726156 ATGCCAATAGCCCAGCTATGGTCTTACTCGA-AGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACAC-ATAATCTCATATCG
*
83726199 ATGCCATATCCCAGATATGGTCTTACGCATAATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACATAATCTCATATCG
83726241 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
83726269 GTAGTCTAAG
Statistics
Matches: 96, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
41 1 0.01
42 63 0.66
43 32 0.33
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACATAATCTCATATCG
Found at i:83730101 original size:96 final size:96
Alignment explanation
Indices: 83729985--83730159 Score: 262
Period size: 96 Copynumber: 1.8 Consensus size: 96
83729975 TTTGATCCAA
* * * *
83729985 TGTAAGACCATGTTTGGAACATGGCCTCAGCACTGTTATGA-GAGCTAGTGTAAGACCATGTCTG
1 TGTAAGACCATGTTTGGAACATGGCATCAGCACTGTTAT-ATGAGCCAGTATAAAACCATGTCTG
83730049 GGACATGGCATCGGCCTCGATATGTAAGCCAG
65 GGACATGGCATCGGCCTCGATATGTAAGCCAG
* * *
83730081 TGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTGTATGAGCCAGTATAAAACCATGTCTGG
1 TGTAAGACCATGTTTGGAACATGGCATCAGCACTGTTATATGAGCCAGTATAAAACCATGTCTGG
*
83730146 GATATGGCATCGGC
66 GACATGGCATCGGC
83730160 ATCTCACCCT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
95 1 0.01
96 69 0.99
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (96 bp):
TGTAAGACCATGTTTGGAACATGGCATCAGCACTGTTATATGAGCCAGTATAAAACCATGTCTGG
GACATGGCATCGGCCTCGATATGTAAGCCAG
Found at i:83730109 original size:48 final size:48
Alignment explanation
Indices: 83729922--83730162 Score: 195
Period size: 48 Copynumber: 5.0 Consensus size: 48
83729912 GATACTAGGG
* * *
83729922 CGATATGTGAA-CCAATGTAAGACCATGTTTGGAACATGACATTGGCAT
1 CGATATGT-AAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT
* * * * * * * * *
83729970 TGTTGTTTGATCCAATGTAAGACCATGTTTGGAACATGGCCTCAGCA-
1 CGATATGTAAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT
* * * * *
83730017 CTGTTATG-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
1 C-GATATGTA-AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT
83730066 CGATATGTAAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT
1 CGATATGTAAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT
* * * * * *
83730114 TG-T-TGTATGAGCCAGTATAAAACCATGTCTGGGATATGGCATCGGCAT
1 CGATATGTA--AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT
83730162 C
1 C
83730163 TCACCCTTTT
Statistics
Matches: 153, Mismatches: 33, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
46 4 0.03
47 2 0.01
48 145 0.95
49 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (48 bp):
CGATATGTAAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT
Found at i:83738671 original size:48 final size:48
Alignment explanation
Indices: 83738600--83738882 Score: 268
Period size: 48 Copynumber: 5.9 Consensus size: 48
83738590 GGGCGATATG
*
83738600 TGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGTTGTA
1 TGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGTTATA
* * *
83738648 TGAGCCAATGTAAGACCATGTTTGGAACATGGCCTCAACATTGTTATGA
1 TGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGTTAT-A
* * * * * * *
83738697 -GAGCTAGTGTAAGACCATGTTTGGGACATGGTATCGGCCTTGATATG
1 TGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGTTATA
* * * *
83738744 TGAGCCAGTGTAAGACCATGTTTGGAACGTAGCATCAGTATTGTTGTA
1 TGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGTTATA
* * * * * * *
83738792 TGAGCCAATATGACACCATGTCTAGG-ACATGGCATC-GACACTGATATA
1 TGAGCCAGTGTAAGACCATGT-TTGGAACATGGCATCAG-CATTGTTATA
**
83738840 TGAGAACCAGTGTAAGACCATG-TCCGAGACATGGCATCAGCAT
1 TGAG--CCAGTGTAAGACCATGTTTGGA-ACATGGCATCAGCAT
83738883 CTTACCCTTT
Statistics
Matches: 183, Mismatches: 43, Indels: 16
0.76 0.18 0.07
Matches are distributed among these distances:
47 1 0.01
48 153 0.84
49 4 0.02
50 24 0.13
51 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (48 bp):
TGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGTTATA
Found at i:83750137 original size:43 final size:43
Alignment explanation
Indices: 83750050--83750216 Score: 155
Period size: 43 Copynumber: 3.9 Consensus size: 43
83750040 AGCTTTTACA
* * * ** *
83750050 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATTG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCACATAATG
* *
83750092 ATGCCGATAG-CCCA-ACTATGGTCTTACACGAAATTA-ATTAATG
1 ATGCCAAT-GTCCCAGAC-ATGGTCTTACACGAAATCACA-TAATG
* *
83750135 ATGCCAATGTCCCAGACATGGTCTTCCACGTAATCACATAATG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCACATAATG
* *
83750178 ATGCCAATGTCCTAGACATGGTTTTACAC-ATAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGA-AATCACAT
83750217 CTCGTTAATC
Statistics
Matches: 102, Mismatches: 15, Indels: 15
0.77 0.11 0.11
Matches are distributed among these distances:
42 8 0.08
43 91 0.89
44 3 0.03
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCACATAATG
Found at i:83755235 original size:27 final size:28
Alignment explanation
Indices: 83755178--83755247 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
83755168 AAACTTGTAC
*
83755178 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
83755206 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
83755233 AGCACTAGGTGTGCG
1 AGCACTAAGTGTGCG
83755248 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:83757340 original size:42 final size:42
Alignment explanation
Indices: 83757217--83757382 Score: 172
Period size: 42 Copynumber: 3.9 Consensus size: 42
83757207 AGTACCGTAC
* * * *
83757217 CAATGTCATATCCCAGATATCGTCTTACATATAATCTCGTAT
1 CAATGCCATATCCCAGATATGGTCTTACACATAATCTCATAT
* * * * * *
83757259 CGATGCCAATAGCCTAGCTATGGTCTTACTCGA-AGTCTCATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACAC-ATAATCTCATAT
83757302 CAATGCCATATCCCAGATATGGTCTTACACATAATCTCATAT
1 CAATGCCATATCCCAGATATGGTCTTACACATAATCTCATAT
** * * *
83757344 TGATGCCATAACCCAGTTATGGTCTTACACATAGTCTCA
1 CAATGCCATATCCCAGATATGGTCTTACACATAATCTCA
83757383 GTAACCCTAA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
41 1 0.01
42 67 0.67
43 31 0.31
44 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACACATAATCTCATAT
Done.